BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645064|ref|NP_207234.1| hypothetical protein
[Helicobacter pylori 26695]
(121 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobact... 30 0.015
ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99] 28 0.096
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 27 0.21
ref|NP_223053.1| ALPHA-KETOGLUTARATE PERMEASE [Helicobacter... 25 0.62
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 25 0.81
ref|NP_223783.1| putative [Helicobacter pylori J99] 25 0.81
ref|NP_222991.1| putative [Helicobacter pylori J99] 25 0.81
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 24 1.1
ref|NP_222772.1| putative [Helicobacter pylori J99] 24 1.1
ref|NP_223285.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE [Heli... 24 1.4
ref|NP_223790.1| putative [Helicobacter pylori J99] 23 2.4
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 23 3.1
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 23 3.1
ref|NP_223957.1| 50S RIBOSOMAL PROTEIN L3 [Helicobacter pyl... 23 3.1
ref|NP_223787.1| putative [Helicobacter pylori J99] 23 3.1
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 23 3.1
ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 23 3.1
ref|NP_224153.1| putative [Helicobacter pylori J99] 22 5.3
ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Heli... 22 5.3
ref|NP_223645.1| putative [Helicobacter pylori J99] 22 5.3
ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter p... 22 5.3
ref|NP_222962.1| putative [Helicobacter pylori J99] 22 5.3
ref|NP_222846.1| putative [Helicobacter pylori J99] 22 5.3
ref|NP_224061.1| putative Inner membrane protein [Helicobac... 22 6.9
ref|NP_223982.1| PHOSPHOGLYCERATE KINASE [Helicobacter pylo... 22 6.9
ref|NP_223405.1| putative [Helicobacter pylori J99] 22 6.9
ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter... 22 6.9
ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pyl... 21 9.0
ref|NP_223223.1| BETA-KETOACYL-ACP SYNTHASE I [Helicobacter... 21 9.0
ref|NP_222912.1| putative [Helicobacter pylori J99] 21 9.0
>ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobacter pylori J99]
Length = 352
Score = 30.4 bits (67), Expect = 0.015
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 7 SSMREKLSQLKARQQKQEMPANLSIIHALRATQEGFED------------DGVMRNYDLL 54
SS+ ++ +L A E+ +++ + L Q E+ +G+ N +LL
Sbjct: 9 SSILKRYDELTALLSSVEVVSDIKKLTELSKEQSSIEEISVASKEYLSVLEGIKENKELL 68
Query: 55 ESQFKENLTKEDRELLESPKPNLE 78
E + L KE+ ++LE K LE
Sbjct: 69 EDKELSELAKEELKILEIQKSELE 92
Score = 26.2 bits (56), Expect = 0.28
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 7 SSMREKLSQLKARQQKQEMPANLSIIHALRATQEGFEDDGVMRNYDLLESQFKENLT--- 63
S + EKLS + R E+ A LS + + ++ E + + + KE L+
Sbjct: 2 SILAEKLSSILKRYD--ELTALLSSVEVVSDIKKLTELSKEQSSIEEISVASKEYLSVLE 59
Query: 64 --KEDRELLESPKPNLEKLQELKIRLLEKNGIFKPPKQ 99
KE++ELLE + + +ELKI ++K+ + KQ
Sbjct: 60 GIKENKELLEDKELSELAKEELKILEIQKSELETAIKQ 97
>ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99]
Length = 451
Score = 27.7 bits (60), Expect = 0.096
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 60 ENLTKEDRELLESPKPNLEKLQ 81
+NL KE +E+LE +PN +K Q
Sbjct: 428 KNLPKEQQEILEKMRPNAQKTQ 449
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 26.6 bits (57), Expect = 0.21
Identities = 20/76 (26%), Positives = 35/76 (45%), Gaps = 10/76 (13%)
Query: 6 NSSMREKLSQLKARQQ--KQEMPANLSIIHALRATQEGFEDDGVMRNYDLLESQFKENLT 63
N +++E + K R+ K+E P L I + A+ N+D E+ N
Sbjct: 259 NPTLKEPKQETKEREPTLKKETPTTLKPIMPISASNT--------ENHDKTENHKTPNHP 310
Query: 64 KEDRELLESPKPNLEK 79
++ +L ESP+ N +K
Sbjct: 311 IKEDDLQESPQENPQK 326
>ref|NP_223053.1| ALPHA-KETOGLUTARATE PERMEASE [Helicobacter pylori J99]
Length = 437
Score = 25.0 bits (53), Expect = 0.62
Identities = 15/58 (25%), Positives = 27/58 (45%), Gaps = 2/58 (3%)
Query: 54 LESQFKENLTKE--DRELLESPKPNLEKLQELKIRLLEKNGIFKPPKQKSQISLVFGM 109
L S F N+ +E D E K N+ +E I+ ++ + + K + +VFG+
Sbjct: 201 LLSLFLRNIMEETMDNEATPQKKTNVNNTKETHIKETQRGSLKELLNHKKALMIVFGL 258
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 24.6 bits (52), Expect = 0.81
Identities = 20/58 (34%), Positives = 29/58 (49%), Gaps = 13/58 (22%)
Query: 48 MRNYDL--LESQFKENLTKEDRELLE-----------SPKPNLEKLQELKIRLLEKNG 92
+ N DL L ++ K+ L K ++E L+ +PK LEK +E LLEK G
Sbjct: 803 LENLDLSPLIARLKKQLEKLEKEKLKLNLHNENFVKNAPKSVLEKARESLKTLLEKEG 860
>ref|NP_223783.1| putative [Helicobacter pylori J99]
Length = 290
Score = 24.6 bits (52), Expect = 0.81
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 6 NSSMREKLSQLKAR------QQKQEMPANLSIIHAL--RATQEGFEDDGVMRNYDLLESQ 57
N+ + EK++ A+ ++KQE+ N I L R T++ D + N+D +
Sbjct: 177 NALLEEKITSGHAKVLVGLEEEKQELILNSIIGQKLSVRQTEDLARDFKINANFDNKKHG 236
Query: 58 FKENLTKEDRELLESPKPNLEKLQELKIRLLEKNGIFK 95
FK+ T + LE +L +LK L K + +
Sbjct: 237 FKQTQTLIAEDELERFNQSLWDRYKLKAALKGKKIVLR 274
>ref|NP_222991.1| putative [Helicobacter pylori J99]
Length = 418
Score = 24.6 bits (52), Expect = 0.81
Identities = 11/19 (57%), Positives = 13/19 (67%)
Query: 53 LLESQFKENLTKEDRELLE 71
+LE + N TK DRELLE
Sbjct: 255 MLERMNRRNRTKSDRELLE 273
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 24.3 bits (51), Expect = 1.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 46 GVMRNYDLLESQFKENLTKEDRELLESPKPNLEKLQELKIRLLEK 90
G+ Y LE++ +E + L P P E L+ KI LLEK
Sbjct: 70 GLREFYQALENK-QETIIIAPISALLHPLPKKELLESFKITLLEK 113
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 24.3 bits (51), Expect = 1.1
Identities = 20/67 (29%), Positives = 34/67 (49%), Gaps = 11/67 (16%)
Query: 10 REKLSQLKARQQKQEMPANLSIIHALRATQEGFEDDGV--MRNYDLLESQFKENLTKEDR 67
+E L++ K QKQ ++ L+ +++ E++ +R + L +ENLTKE
Sbjct: 60 KENLTKEKTELQKQ--------VNELKNSKQVLENEKADWLREKENLTKD-RENLTKEKT 110
Query: 68 ELLESPK 74
EL E K
Sbjct: 111 ELTEKNK 117
Score = 21.2 bits (43), Expect = 9.0
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 4/18 (22%)
Query: 59 KENLTKEDRELLESPKPN 76
KENLTKE R+ KPN
Sbjct: 207 KENLTKESRQ----RKPN 220
>ref|NP_223285.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE [Helicobacter pylori J99]
Length = 449
Score = 23.9 bits (50), Expect = 1.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 69 LLESPKPNLEKLQELKIRLLEKNGI 93
+LE+PK L+ LQ+ KI + GI
Sbjct: 1 MLETPKVLLKNLQDCKIHFIGIGGI 25
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 23.1 bits (48), Expect = 2.4
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 58 FKENLTKEDRELL---ESPKPNLEKLQELKIRLLEKNGIFKPPKQ 99
F++N+ K + + E+ +L+ +QE RL E N F P+Q
Sbjct: 19 FRKNMGKTETTIFVDWENLLADLKAIQETDERLKESNFNFNNPEQ 63
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 22.7 bits (47), Expect = 3.1
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 45 DGVMRNYDLLESQFKENLTKEDRELLESPKPNLEKLQELKIRLLEKNGIFKPPKQKS 101
DG+ N +L+ + K ED+++L K LE L+ L KN ++ + K+
Sbjct: 682 DGLKINESVLKKELKNATDLEDKQIL---KTALEWLEAKNKALKMKNKAYEELELKA 735
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 22.7 bits (47), Expect = 3.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 78 EKLQELKIRLLEKNGIFKPPKQKSQISLVFGMNAL 112
E L+ LK + +EK ++ P ++ L G N L
Sbjct: 594 EVLENLKDKGVEKISVYMPAISNDRLCLELGSNLL 628
>ref|NP_223957.1| 50S RIBOSOMAL PROTEIN L3 [Helicobacter pylori J99]
Length = 191
Score = 22.7 bits (47), Expect = 3.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 16 LKARQQKQEMPANLSIIHALRATQEGFEDDG 46
LKA QQK+ +LS + L+ + F+ G
Sbjct: 72 LKASQQKELGDLDLSALETLKRVKASFKTKG 102
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 22.7 bits (47), Expect = 3.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 63 TKEDRELLESPKPNLEKLQELKIRLLEKNGIFKPPKQKSQ 102
T E+ E +ES K ++ K E KI+ + K+K +
Sbjct: 116 TNENLEKIESKKESINKENEKKIKNEASLQVLTQKKEKEE 155
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE [Helicobacter
pylori J99]
Length = 469
Score = 22.7 bits (47), Expect = 3.1
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 59 KENLTKEDRELLESPKPNLEKLQELKIRLLEKNGIFKPPKQKSQISLV 106
K+ + K++ E PK E + +I + EKN + K+K +V
Sbjct: 202 KKEIPKKEIPKKEIPKKEAENESKNQIFIAEKNDTWIKTKRKKHKKIV 249
>ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 550
Score = 22.7 bits (47), Expect = 3.1
Identities = 14/39 (35%), Positives = 21/39 (52%)
Query: 52 DLLESQFKENLTKEDRELLESPKPNLEKLQELKIRLLEK 90
+LL + KE+L+ E LE KP + + L LLE+
Sbjct: 498 ELLLAPTKESLSVLYEEQLEFLKPQIAACKRLSALLLEQ 536
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 21.9 bits (45), Expect = 5.3
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 52 DLLESQFKENLTKEDRELLESPKPNLEKLQELKIRLLEKNGIFKPPK 98
D+LE F L+ + +EL +++L K RL EK + PK
Sbjct: 167 DILEKDF---LSYQHKELEHKKNQIIKRLNAQKERLKEKLEKLEDPK 210
>ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
Length = 331
Score = 21.9 bits (45), Expect = 5.3
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 59 KENLTKEDRELLESPKPNLEKLQELKIRLLEKNGIFKPPKQKSQISL 105
KE + LLE P N + +++ +FK KQKSQ SL
Sbjct: 202 KERKAYIKKSLLE-PSLNAWISDDYRLKYFNGAYLFKKDKQKSQNSL 247
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 21.9 bits (45), Expect = 5.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 68 ELLESPKPNLEKLQELKIRLLEKN 91
ELL +P+ +E+L+E ++ EKN
Sbjct: 1449 ELLSNPRGIIEELKEEELVNAEKN 1472
>ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
Length = 594
Score = 21.9 bits (45), Expect = 5.3
Identities = 19/75 (25%), Positives = 30/75 (39%), Gaps = 4/75 (5%)
Query: 32 IHALRATQEGFEDDGVMRNYDLLESQFKENLTKEDRELLESPKPNLEKLQELKIRLLEKN 91
IH+L GF+ D M+ + Q L E L L++LQE K
Sbjct: 286 IHSLN----GFDTDEAMKQAIINHYQSHLPLMPEQILLSACSNETLKELQEFISHQYSKK 341
Query: 92 GIFKPPKQKSQISLV 106
PK+ +++L+
Sbjct: 342 IALSIPKKGDKLALI 356
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 21.9 bits (45), Expect = 5.3
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 7 SSMREKLSQLKARQQK----QEMPANLSIIHALRATQEGFEDDGVMRNYDLLESQFKENL 62
+ ++E L QL ++Q Q A L + ++ E D ++N E FK
Sbjct: 35 AELKEDLRQLSEKEQSLRILQTENARLLDEKSDLLNKKEKEIDEKLKNLAAKEEAFKTLQ 94
Query: 63 TKEDRELLESPKPNLEKLQELK 84
T+E + L + N L+E+K
Sbjct: 95 TEEKKRLKNLIEENEGILREIK 116
>ref|NP_222846.1| putative [Helicobacter pylori J99]
Length = 211
Score = 21.9 bits (45), Expect = 5.3
Identities = 14/47 (29%), Positives = 24/47 (50%), Gaps = 1/47 (2%)
Query: 33 HALRATQEGFEDDGVMRNYDLLESQFKENLTKEDRELLESPKPNLEK 79
HA++ + + + DL+E ++K EL+ES K NLE+
Sbjct: 17 HAIQGANPIYRNIIKVEFEDLVE-EYKHFQVLNKAELIESAKENLEQ 62
>ref|NP_224061.1| putative Inner membrane protein [Helicobacter pylori J99]
Length = 549
Score = 21.6 bits (44), Expect = 6.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 53 LLESQFKENLTKEDRELLESPKPNLEKLQELKIRLLEKNG 92
++ Q + L + +EL E K +KLQ ++L +K+G
Sbjct: 378 MVSMQKLKELAPKMKELQEKYKGEPQKLQAHMMQLYKKHG 417
>ref|NP_223982.1| PHOSPHOGLYCERATE KINASE [Helicobacter pylori J99]
Length = 402
Score = 21.6 bits (44), Expect = 6.9
Identities = 14/46 (30%), Positives = 23/46 (49%), Gaps = 1/46 (2%)
Query: 51 YDLLESQFKENLTKEDRELLESPKPNLEKLQELKIRLLEKNGIFKP 96
YD+ +S ++ L + ELL+S K K+ L I + + I P
Sbjct: 239 YDVQDSSVEDALINDALELLQSAKEKKVKVY-LPIDAVTTDDILNP 283
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 21.6 bits (44), Expect = 6.9
Identities = 17/84 (20%), Positives = 37/84 (43%), Gaps = 1/84 (1%)
Query: 8 SMREKLSQLKARQQKQEMPANLSIIHALRATQEGFEDDGVMRNYDLLESQFKENLTKEDR 67
S EK ++A + K + S+I + + + +N +L Q + +
Sbjct: 157 SQEEKKLNVQALEVKSSIQKISSVIDEQKTRESTLKSLQTEQNKLILSMQKDYAIYNQRL 216
Query: 68 ELLESPKPNLEKLQELKIRLLEKN 91
LLE + NL L + ++ ++++N
Sbjct: 217 SLLEKERQNLNALLK-RLNIIKQN 239
>ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter pylori J99]
Length = 435
Score = 21.6 bits (44), Expect = 6.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 57 QFKENLTKEDRELLESPKPNLEKLQELKIRLL 88
++++ +ELL+SP L+++K R+L
Sbjct: 116 EYEDEAIMRLKELLKSPNFTQNALEKVKTRML 147
>ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pylori J99]
Length = 486
Score = 21.2 bits (43), Expect = 9.0
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 77 LEKLQELKIRLLEKNGIFKPPKQKSQISLVFGMNALVPLGTIKT 120
+E+ QEL +++ E+ I K + ++ N GT+ T
Sbjct: 412 VEEAQELHLKVNEERRIHKQNGSIEEAEIIVAKNRNGATGTVYT 455
>ref|NP_223223.1| BETA-KETOACYL-ACP SYNTHASE I [Helicobacter pylori J99]
Length = 412
Score = 21.2 bits (43), Expect = 9.0
Identities = 7/15 (46%), Positives = 12/15 (79%)
Query: 34 ALRATQEGFEDDGVM 48
AL+AT+E +D G++
Sbjct: 76 ALKATREAMKDSGIL 90
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 21.2 bits (43), Expect = 9.0
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 62 LTKEDRELLESPKPNLEKLQELKIRLLEKNGIFKPPKQK 100
+TKE +LL + + + +LKIR+ N K P++K
Sbjct: 554 ITKEFNKLLAIVQDSPQDSYQLKIRVRHNN---KLPREK 589
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.133 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,477
Number of Sequences: 1491
Number of extensions: 5636
Number of successful extensions: 44
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 35
length of query: 121
length of database: 494,079
effective HSP length: 67
effective length of query: 54
effective length of database: 394,182
effective search space: 21285828
effective search space used: 21285828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)