BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645067|ref|NP_207237.1| hypothetical protein
[Helicobacter pylori 26695]
(366 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223639.1| putative [Helicobacter pylori J99] 231 3e-62
ref|NP_222756.1| DNA transformation competancy [Helicobacte... 145 2e-36
ref|NP_223025.1| putative [Helicobacter pylori J99] 40 7e-05
ref|NP_223197.1| cag island protein [Helicobacter pylori J99] 35 0.002
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 35 0.003
ref|NP_223642.1| putative [Helicobacter pylori J99] 33 0.012
ref|NP_223610.1| putative [Helicobacter pylori J99] 32 0.020
ref|NP_223990.1| putative [Helicobacter pylori J99] 32 0.026
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 31 0.044
ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter p... 30 0.13
ref|NP_223731.1| putative [Helicobacter pylori J99] 29 0.17
ref|NP_222772.1| putative [Helicobacter pylori J99] 29 0.22
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 28 0.29
ref|NP_223889.1| putative [Helicobacter pylori J99] 28 0.37
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 28 0.49
ref|NP_222977.1| putative [Helicobacter pylori J99] 28 0.49
ref|NP_223620.1| putative [Helicobacter pylori J99] 27 0.64
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 27 0.64
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 27 0.64
ref|NP_223761.1| putative [Helicobacter pylori J99] 27 0.83
ref|NP_223415.1| putative [Helicobacter pylori J99] 27 0.83
ref|NP_223618.1| putative [Helicobacter pylori J99] 26 1.4
ref|NP_223560.1| putative [Helicobacter pylori J99] 26 1.4
ref|NP_222963.1| putative [Helicobacter pylori J99] 26 1.4
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 26 1.4
ref|NP_222782.1| putative [Helicobacter pylori J99] 26 1.4
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 26 1.4
ref|NP_224123.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 26 1.9
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 26 1.9
ref|NP_223770.1| putative [Helicobacter pylori J99] 26 1.9
ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 25 2.4
ref|NP_223695.1| PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN [... 25 2.4
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 25 3.2
ref|NP_223668.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Heli... 25 3.2
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 25 3.2
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 25 3.2
ref|NP_223139.1| putative [Helicobacter pylori J99] 25 3.2
ref|NP_223334.1| putative [Helicobacter pylori J99] 25 4.1
ref|NP_224181.1| putative [Helicobacter pylori J99] 24 5.4
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 24 5.4
ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobact... 24 5.4
ref|NP_223176.1| putative [Helicobacter pylori J99] 24 5.4
ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori ... 24 5.4
ref|NP_222774.1| putative [Helicobacter pylori J99] 24 5.4
ref|NP_222827.1| putative [Helicobacter pylori J99] 24 7.1
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 23 9.2
ref|NP_223534.1| putative [Helicobacter pylori J99] 23 9.2
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 23 9.2
>ref|NP_223639.1| putative [Helicobacter pylori J99]
Length = 328
Score = 231 bits (588), Expect = 3e-62
Identities = 124/260 (47%), Positives = 175/260 (66%), Gaps = 5/260 (1%)
Query: 96 KEFVEEPVIETEKKETSQNEPIQEKKERIFKNFFSRIGFDKS--IAPTMLFEEVRDASVI 153
K EE + E K + + + Q +E+ F ++G K + TMLF+EV++A V+
Sbjct: 34 KAINEEELEEQVKAKAKEQQKTQ--REKTLNGFLKKVGLKKRDMLQSTMLFDEVKEADVL 91
Query: 154 YHLEKKLGDYIFYVACFFFGTTALLIILLTILLPLKQKEPYLVQFSNNKENFALVQKADS 213
+ E+K+GD+IF A FFF + I++ LLPLK+K PYLV FSN +NFA+VQ+AD
Sbjct: 92 FQAERKIGDWIFSSAVFFFALALIEAIIIVCLLPLKEKVPYLVTFSNATQNFAIVQRADK 151
Query: 214 SITANKALIRSLVGAYVLNRESITHIEQHEKMRQNTIKEQSSNEVWYEFEKLIAHYDSIY 273
SI AN+AL+R LV +YV NRE+I+ I++ ++ TI+ QS+ EVW FEKL+++ SIY
Sbjct: 152 SIRANQALVRQLVASYVNNRENISSIKEQNEIAHETIRLQSAFEVWDFFEKLVSYEHSIY 211
Query: 274 TNPLLTRKVKIANIYL-DKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKKQEINFDSM 332
TN LTRK+ I NI L K A I+I L+H +LES KRY+++M+FEF+ EI+ S+
Sbjct: 212 TNINLTRKISIINIALISKTQANIEISAQLFHKEKLESEKRYRIIMTFEFEPIEIDTKSV 271
Query: 333 SLNPTGFMVTSYDVTEIAIV 352
LNPTGF+VT YDVTEIAI+
Sbjct: 272 PLNPTGFIVTGYDVTEIAIL 291
>ref|NP_222756.1| DNA transformation competancy [Helicobacter pylori J99]
Length = 247
Score = 145 bits (365), Expect = 2e-36
Identities = 81/209 (38%), Positives = 124/209 (58%), Gaps = 6/209 (2%)
Query: 149 DASVIYHLEKKLGDYIFYVACFFFGTTALLIILLTILLPLKQKEPYLVQFSNNKENFALV 208
D ++ LE+ + + +L I+L +LPL++ E + V F N +++A++
Sbjct: 38 DMQSVFRLERNRLKIAYRLLGLMSFIALVLAIVLISILPLQKTEHHFVDFLNQDKHYAII 97
Query: 209 QKADSSITANKALIRSLVGAYVLNRESITHIEQHEKMRQNTIKEQSSNEVWYEFEKLIAH 268
Q+AD SI++N+AL RSL+GAYVLNRESI I+ +K R ++ QSS++VW FE LI
Sbjct: 98 QRADKSISSNEALARSLIGAYVLNRESINRID--DKSRYELVRLQSSSKVWQRFEDLIKA 155
Query: 269 YDSIYTNPLLTRKVKIANIYL----DKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKK 324
+SIY L R+V I NI + + +A + I L + +L KRYK+V+S+ F
Sbjct: 156 QNSIYVQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDT 215
Query: 325 QEINFDSMSLNPTGFMVTSYDVTEIAIVN 353
+ ++ SM NPTGF +T Y +TEIA N
Sbjct: 216 PDFDYASMPKNPTGFKITRYSITEIAPTN 244
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 40.4 bits (93), Expect = 7e-05
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 18/132 (13%)
Query: 6 EVLEQFHGGLKNL-ELQTKRRMGLWGDPKENEEQTL-FLEEIENELKQLENKENLKADNN 63
E+LE L+NL +L+ + + NEEQ L L E E E + E +E +K +
Sbjct: 132 EILETNWDELENLGDLEALAK-----EEPNNEEQLLPTLNEQEGETPKEEAQEEVKKEEV 186
Query: 64 TEFKEE-----NQDTKENQPNDLFSLPLPTQTTING------IKEFVEEPVIETEKKETS 112
E +EE Q+ EN ++ TQ ++ KE + +ET K+ET
Sbjct: 187 KEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELETPKEETQ 246
Query: 113 QNEPIQEKKERI 124
+ EPI+E+ + I
Sbjct: 247 EQEPIKEETQEI 258
Score = 33.9 bits (76), Expect = 0.007
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Query: 19 ELQTKRRMGLWGDPKENEEQTLFLEEIEN--------ELKQLEN--KENLKADNNTEFKE 68
EL+T + +P + E Q + E+ E EL+ ++ KE + N+ E K+
Sbjct: 237 ELETPKEETQEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKK 296
Query: 69 ENQDTKEN--QPNDLFS--LPLPTQTTINGIKEFVEEPVIETEK-KETSQNEPIQEKKE 122
E Q+T+EN P D+ + L +P + + E + +E E+ ET Q + IQE ++
Sbjct: 297 ETQETQENTETPQDIETQELEIPKEEETQEVAEKTQVQGLEKEEIAETPQEKEIQETQD 355
Score = 31.2 bits (69), Expect = 0.044
Identities = 24/93 (25%), Positives = 43/93 (45%), Gaps = 3/93 (3%)
Query: 38 QTLFLEEIENELKQLENKENLKADNNTEFKEENQDTKENQPNDLFSLPLPTQTTINGI-K 96
Q L E EN Q KE + NTE ++ + + P + + + +T + G+ K
Sbjct: 279 QELVKEIQENSNDQENKKETQETQENTETPQDIETQELEIPKEEETQEVAEKTQVQGLEK 338
Query: 97 EFVEEPVIETEKKETSQNEP--IQEKKERIFKN 127
E + E E E +ET P ++ + E++ +N
Sbjct: 339 EEIAETPQEKEIQETQDETPQELEAQDEKLQEN 371
Score = 28.5 bits (62), Expect = 0.29
Identities = 22/93 (23%), Positives = 40/93 (42%), Gaps = 2/93 (2%)
Query: 34 ENEEQTLFLEEIENELKQLENKENLKADNNTEFKEEN--QDTKENQPNDLFSLPLPTQTT 91
E +E + EE E+ + + L+ + E +E Q+T++ P +L + Q
Sbjct: 312 ETQELEIPKEEETQEVAEKTQVQGLEKEEIAETPQEKEIQETQDETPQELEAQDEKLQEN 371
Query: 92 INGIKEFVEEPVIETEKKETSQNEPIQEKKERI 124
E ++E + KET Q E ++ E I
Sbjct: 372 ETPKDESMQESAQNLQDKETPQEETQEDHYESI 404
>ref|NP_223197.1| cag island protein [Helicobacter pylori J99]
Length = 252
Score = 35.4 bits (80), Expect = 0.002
Identities = 29/175 (16%), Positives = 78/175 (44%), Gaps = 7/175 (4%)
Query: 182 LTILLPLKQKEPYLVQFSNNKENFALVQKADS-SITANKALIRSLVGAYV--LNRESITH 238
+ +++PLK+ + ++ F +V+++D+ I ++A++ S +V L S
Sbjct: 53 IVMMMPLKKTDIFVYGIDRYTGEFKIVKRSDARQIVNSEAVVDSATSKFVSLLFGYSKNS 112
Query: 239 IEQHEKMRQNTIKEQSSNEVWYEFEKLIAHY-DSIYTNPLLTRKV---KIANIYLDKDLA 294
+ + + F + I + D + +++ + K+ N L +
Sbjct: 113 LRDRKDQLMQYCDVSFQTQAMRMFNENIRQFVDKVRAEAIISSNIQREKVKNSPLTRLTF 172
Query: 295 YIDIEVSLYHSGELESLKRYKVVMSFEFKKQEINFDSMSLNPTGFMVTSYDVTEI 349
+I I+++ E + + +V + ++F + + +++ +NP GF V +T++
Sbjct: 173 FITIKITPDTMENYEYITKKQVTIYYDFARGNSSQENLIINPFGFKVFDIQITDL 227
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 35.0 bits (79), Expect = 0.003
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 20 LQTKRRMGLWGDPKENEEQTLFLEEIENELKQLENKENLKADNNTEFKEENQDTKENQPN 79
L+TK+ + DPKE EEQ LE+ E E K E + + D + KEE + N N
Sbjct: 126 LKTKKLIVDAPDPKELEEQKKALEK-EKEAK--EQAQKAQKDKREKRKEERAKNRANLEN 182
Query: 80 DLFSLPLPTQTTINGIKEFVEEPVIETEKKETSQNEPIQEKKERIFKNFFSRI 132
++ P + N + + E + + + E Q E +++ +E+ N +I
Sbjct: 183 LTNAMSNPQNLSNN---KNLSELIKQQRENELDQMERLEDMQEQAQANALKQI 232
Score = 23.9 bits (50), Expect = 7.1
Identities = 27/143 (18%), Positives = 54/143 (36%), Gaps = 5/143 (3%)
Query: 3 KRSEVLEQFHGGLKNLELQTKRRMGLWGDPKENEEQTLFLEEIENELKQLENKENLKADN 62
KR E + L+NL L + +E L ++ ENEL Q+E E+++
Sbjct: 168 KRKEERAKNRANLENLTNAMSNPQNLSNNKNLSE---LIKQQRENELDQMERLEDMQEQA 224
Query: 63 NTEFKEENQDTKENQPNDLFSLPLPTQTTINGIK--EFVEEPVIETEKKETSQNEPIQEK 120
++ ++ + Q + + +I K + E+ IE +++ + +
Sbjct: 225 QANALKQIEELNKKQAEEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVR 284
Query: 121 KERIFKNFFSRIGFDKSIAPTML 143
+ F RI + A L
Sbjct: 285 TNKALYQFILRIAQKDNFASAYL 307
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 33.1 bits (74), Expect = 0.012
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 5 SEVLEQFHGGLKNLELQT-------KRRMGLWGDPKENEEQTLFLEEIENELKQLENKEN 57
SE+L+ F L+NLE Q KR G W + ++N+E + + + +L ++
Sbjct: 94 SELLDAFTSSLENLEKQKINPIREQKRESG-WQNNEDNKENSELEKAFKKDLSFSQSNPI 152
Query: 58 L--KADNNTEFKEENQDTKENQPND 80
K + + E KEE ++KE +P +
Sbjct: 153 PLDKKETSKEEKEEELESKEKEPKE 177
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 32.3 bits (72), Expect = 0.020
Identities = 29/101 (28%), Positives = 45/101 (43%), Gaps = 7/101 (6%)
Query: 34 ENEEQTLFLEE-IENELKQLENKENLKADNNTEFKEENQDTKENQPNDLFSLPLPTQTTI 92
E E ++L +EE I E N+E N + K E Q+ + + +L L L + +
Sbjct: 87 ERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEVLKKEMLELEKLALELENLV 146
Query: 93 -NGIKEFVEEPVIETEKKETSQNEPIQEKKERIFKNFFSRI 132
N +K E I +KK E + EK E +F+ RI
Sbjct: 147 ENEVKNIKETQQIIFKKK-----EELVEKTEPKIYSFYERI 182
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 32.0 bits (71), Expect = 0.026
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 194 YLVQFSNNKENFALVQKADSSITANKALIRSL-------VGAYVLNRESITHIEQHEKMR 246
Y + E+F T NK L R+L +G +VLNRES+ H EK++
Sbjct: 892 YSPHYRKRYEDFLKADYPKILFTNNKDLFRALSLLGIELIGLHVLNRESLNH--SFEKLK 949
Query: 247 QNTIKEQSSNE 257
TI E E
Sbjct: 950 DPTIGESYYKE 960
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 31.2 bits (69), Expect = 0.044
Identities = 20/87 (22%), Positives = 42/87 (47%), Gaps = 2/87 (2%)
Query: 42 LEEIENELKQLENKENLKADNNTEFKEENQDTKENQPNDLFSLPLPTQTTINGIKEFVEE 101
+ E++ + ++++ EN+K + N +T+ N + PTQ+ I E +++
Sbjct: 195 ISEVKKQEQEIKRHENIKRRTGFRVIKRNDETENETENSVTESKKPTQSAA-AIFEDIKK 253
Query: 102 PVIETEKKETSQ-NEPIQEKKERIFKN 127
E +K+ET + +P + K KN
Sbjct: 254 EWQEKDKQETKKTKKPSKPKATPTAKN 280
Score = 30.8 bits (68), Expect = 0.058
Identities = 39/177 (22%), Positives = 67/177 (37%), Gaps = 31/177 (17%)
Query: 16 KNLELQTKRRMGLWGDPKENEEQTLFLEEIENELKQLENKENLK------------ADNN 63
+N E + + + K + E+I+ E ++ + +E K A NN
Sbjct: 222 RNDETENETENSVTESKKPTQSAAAIFEDIKKEWQEKDKQETKKTKKPSKPKATPTAKNN 281
Query: 64 TEFKEENQDTKENQPNDLFS--------LPLPTQTTINGIKEFVE-----EPVIETEKKE 110
K + D ++ + ND++ L Q +N +E E + ++K
Sbjct: 282 KSHKIDFSDVRDFKGNDIYDDETDEILLFDLHEQDNLNKEEEEKEARQNINDRVRVQRKN 341
Query: 111 TSQNE---PIQEKKERIFKNFFSRIGFDKSIAPTMLFEEVRDASVIYHLEKKLGDYI 164
NE Q KK+R+F+N S+ +IA + EEVR L D I
Sbjct: 342 PWMNEAGIKRQSKKKRVFRNDNSQKVIQSAIA---IPEEVRVYEFAQKANLNLADVI 395
>ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter pylori J99]
Length = 567
Score = 29.6 bits (65), Expect = 0.13
Identities = 19/78 (24%), Positives = 31/78 (39%)
Query: 52 LENKENLKADNNTEFKEENQDTKENQPNDLFSLPLPTQTTINGIKEFVEEPVIETEKKET 111
++ K L N+ + + EN + NDL L L +N + E + P + E
Sbjct: 193 IDEKNRLFLQNDDKNRSENVMIVDLLRNDLSRLALKNSVKVNQLFEIISLPSVYQMISEI 252
Query: 112 SQNEPIQEKKERIFKNFF 129
P++ IFK F
Sbjct: 253 EAQLPLKTSLFEIFKALF 270
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 29.3 bits (64), Expect = 0.17
Identities = 31/131 (23%), Positives = 53/131 (39%), Gaps = 13/131 (9%)
Query: 36 EEQTLFLEEIENELKQLENKENLKADNNTEFKEENQDTK-----------ENQPNDLFSL 84
E + L+ ++ + K+L A NN + + + + K +N N SL
Sbjct: 61 ESRLKSLKGMDKDAKELVGISKSYAHNNEKDRSDFERFKSRLDKAIDSFNQNLDNGAASL 120
Query: 85 PLPTQTTINGIKEFVEEPVIETEKKETSQNEPIQEKKERIFKNFFSR--IGFDKSIAPTM 142
LP+ I+ K + +KE+ QN Q KK+ N ++ DK+
Sbjct: 121 KLPSDIDIDDTKALEKFSKSLESEKESIQNSLHQWKKQLAETNHLNKEYNTLDKTRLNAQ 180
Query: 143 LFEEVRDASVI 153
F++V D S I
Sbjct: 181 KFQDVHDTSKI 191
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 28.9 bits (63), Expect = 0.22
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 23/110 (20%)
Query: 33 KENEEQTLFLEEIENELKQLEN--------KENLKADNNTEFKEENQDTKEN-------- 76
KE E + E++N + LEN KENL D KE+ + T++N
Sbjct: 65 KEKTELQKQVNELKNSKQVLENEKADWLREKENLTKDRENLTKEKTELTEKNKVLTTEKE 124
Query: 77 ----QPNDLFSLPLPTQTTINGIKEFVEEPVIETEKKE-TSQNEPIQEKK 121
+ +L +Q +N +K + V+E EK + T++N ++ K
Sbjct: 125 RLATEKENLTKEKTESQKQVNELKN--SKQVLENEKADLTNENTKLKTDK 172
Score = 28.1 bits (61), Expect = 0.37
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 33 KENEEQTLFLEEIENELKQLENKENLKADNNTEFKEENQD-TKENQPNDLFSLPLPTQTT 91
KE E + E++N + LEN++ + NT+ K + D T++NQ L +
Sbjct: 135 KEKTESQKQVNELKNSKQVLENEKADLTNENTKLKTDKTDLTEKNQ--RLTTEKTELNNK 192
Query: 92 INGIKEFVEEPVIETEK--KETSQNEP 116
I G+ E + E KE+ Q +P
Sbjct: 193 ITGLATEKERLAADKENLTKESRQRKP 219
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 28.5 bits (62), Expect = 0.29
Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 27/106 (25%)
Query: 43 EEIENELKQLENKENLKADNNTEFKEENQDTKENQPNDLFSLPLPT--QTTINGIK---- 96
E EN + KE KE D N PN+ L +PT TT+N +
Sbjct: 174 EGFENTPSDSQKKETNNDKEKENLKENPIDENHNTPNEESFLAIPTPYNTTLNNSEPQEG 233
Query: 97 ---------------------EFVEEPVIETEKKETSQNEPIQEKK 121
+ + P ++ K+ET + EP +K+
Sbjct: 234 LVQISPHPPTHYTIYPKRNRFDDLTNPTLKEPKQETKEREPTLKKE 279
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 28.1 bits (61), Expect = 0.37
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 43 EEIENELKQLENKENLKADNNTEFKEE-NQDTKENQPNDLFSLPLPTQTTINGIKEFVEE 101
+EI+ E+KQ E K+ +K + E K+E Q+TK+ Q + P Q +++ ++ +
Sbjct: 92 QEIKQEIKQ-EIKQEIKQEIKQEIKQEIKQETKQEQEKE----NKPKQNSVSPVQNDQKT 146
Query: 102 P 102
P
Sbjct: 147 P 147
Score = 25.0 bits (53), Expect = 3.2
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 33 KENEEQTLFLEEIENELKQLENKENLKADNNTEFKEENQDTKENQPNDLFSLPLPTQTTI 92
K++ + +E+ E E + +A+ T E+N TK+ P PL T T
Sbjct: 39 KDSAPMSPNVEKSETERQNSTFSPKEEANATTTATEQNP-TKDTVP------PLDTATQK 91
Query: 93 NGIKEFVEEPVIETEKKETSQ---------NEPIQEKKERIFKNFFSRIGFDKSIAPTML 143
IK+ +++ + + K+E Q + QEK+ + +N S + D+ T L
Sbjct: 92 QEIKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTPTTPL 151
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 27.7 bits (60), Expect = 0.49
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 48 ELKQLENKENLKADNNTEFKEENQDTKENQPNDLFSLPLPTQTTINGIKEFVEEPVIETE 107
ELK+ K+N N T + + Q K ++L +L T I+ +++++ E + +TE
Sbjct: 273 ELKEANKKQNEATINYTTLENKIQSVKVKTHDNLGAL-----THISALEDYIVEKITKTE 327
Query: 108 KKETSQNEPIQEKKE 122
+ + + ++KE
Sbjct: 328 IRFLNGFNLLLDQKE 342
>ref|NP_222977.1| putative [Helicobacter pylori J99]
Length = 327
Score = 27.7 bits (60), Expect = 0.49
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 34 ENEEQTLFLEEIENELKQLENKENLKA--DNNTEFKEENQDTKENQPNDLFSLPLPTQTT 91
+NE LFL EI+ ++ LE L + DN+ + E+ E N +PL
Sbjct: 205 DNEAVDLFLSEIQEDIDSLEEAIGLDSSKDNSEKITEDAYSLIEGMTN----IPLIADVL 260
Query: 92 INGIK--------EFVEEPVI 104
G++ +FVE+ V+
Sbjct: 261 QEGLRGVYHSREIDFVEKVVV 281
>ref|NP_223620.1| putative [Helicobacter pylori J99]
Length = 93
Score = 27.3 bits (59), Expect = 0.64
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 147 VRDASVIYHLEKKLGDYIFYVACFFFGTTALLI 179
++DA + Y EK D+ FYV C+ + ++LL+
Sbjct: 12 LKDALIDYLFEKGFDDF-FYVECYKYAASSLLL 43
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 27.3 bits (59), Expect = 0.64
Identities = 25/81 (30%), Positives = 35/81 (42%), Gaps = 9/81 (11%)
Query: 32 PKENEEQTLFLEEIENEL---KQLENKENLKADNNTEFKEENQDTKENQPNDLFSLPLPT 88
PK E T ++E E + K L+ KEN D + E ++TKE QP + P
Sbjct: 503 PKLTTETTAEMQEKETKEAVGKALQTKEN---DTKEVQENETKETKEAQPKE---APTAL 556
Query: 89 QTTINGIKEFVEEPVIETEKK 109
Q + +EE E E K
Sbjct: 557 QEFMANHSNLIEEIKSEFEIK 577
Score = 26.6 bits (57), Expect = 1.1
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 49 LKQLENKENLKADNNTEFKEENQDTKENQ-PNDLFSLPLPTQTTINGIKEFVEEPVIETE 107
L +++ KE LK + E + T NQ P+ ++ P + I+ E + + E
Sbjct: 326 LLKMKFKEALKLKALDDAIVELEQTPFNQSPSISYNAPKQEPKSTERIEG--REKLEKRE 383
Query: 108 KKETSQNEPIQEKKERIFKNFFSRIGFDKSIAPTMLFEEVRDASVIYHLEKKLGDY 163
+ ET Q P+ K+RIF N F ++ T+++E + ++ + D+
Sbjct: 384 RIETPQT-PMLSAKDRIFHNLFKQV-------QTLVYERNYELGAVFEKNIRFIDF 431
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 27.3 bits (59), Expect = 0.64
Identities = 33/164 (20%), Positives = 69/164 (41%), Gaps = 19/164 (11%)
Query: 5 SEVLEQFHGGLKNLELQTKRRMGLWGDPKENEEQTLFLEEIENELKQLENKENLKADNNT 64
+E E +G L + + R++ D K Q L+E +L + +++EN + T
Sbjct: 75 NETSESSNGSLADKLFKKARKLV---DDKRPFTQQKSLDEETQKLNEEDDQENNEHQEET 131
Query: 65 EF----KEENQDTKENQPNDLFSLPLPTQTTINGIKEFVEEPVIETEKKETSQNEPIQEK 120
+ E ++ T+++ P DL + T N ++ ++E TE + + P +
Sbjct: 132 QTDLIDDETSEKTQQDSPQDLSN---EEATEANHFEDLLKE---STESSDNHLDNPTESS 185
Query: 121 KERI-----FKNFFSRIGFDKSIAPTMLFEEVRDASVIYHLEKK 159
+ K ++ FD+ P + ++ D +I +KK
Sbjct: 186 DNHLDNPTETKTQETKTHFDED-KPEEITDDSNDQEIIKGSKKK 228
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 26.9 bits (58), Expect = 0.83
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 19/132 (14%)
Query: 3 KRSEVLEQFHGGLKNLELQTKRRMGLWGDPKENEEQTLFLEEIENELKQLENKENLKADN 62
+RS ++ F KNLEL K + K +EE+ N +KQ + KA +
Sbjct: 25 ERSHLISDFS---KNLELSAK-------NSKFTNNTLKIIEELNNGVKQASEEIKEKAFD 74
Query: 63 NTEFKEENQDTKENQPNDLFSLPLPTQTTI----NGIKEFVEEPVIETEKK---ETSQNE 115
+ K N+ KE N +P + I N + + E + + KK E + N+
Sbjct: 75 FSNEKLTNEQIKELLNN--AKIPTSGRDAITFGTNNLNPEMVEFLHKNNKKMIIEKASNK 132
Query: 116 PIQEKKERIFKN 127
++ K+ FK+
Sbjct: 133 ELELLKDANFKH 144
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 26.9 bits (58), Expect = 0.83
Identities = 32/137 (23%), Positives = 62/137 (44%), Gaps = 15/137 (10%)
Query: 2 SKRSEVLEQFHGGLKNLELQT---KRRMGLWGDPKENEEQTLFLEE----IENELKQLEN 54
S+ ++ +Q+ KNL+LQT K+ L +++E F+ + +E E K+LE
Sbjct: 66 SQECKLQQQYEN--KNLQLQTHFDKKEAHLKHLEAQHKE---FVRDEKRYLEKEKKELEK 120
Query: 55 KENLKADNNTEFKEENQDTKENQPNDLFSLPLPTQTTINGIKEFVEEPV---IETEKKET 111
+ + FK++ KE Q L ++ T + IK + E + +E +K
Sbjct: 121 ERQILEQERENFKKQRAICKEAQAKALDAMLNYMAYTKDEIKSMILEQLEEELEAQKSAL 180
Query: 112 SQNEPIQEKKERIFKNF 128
+ + K+E K++
Sbjct: 181 IRRYEKEAKEEGKKKSY 197
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 26.2 bits (56), Expect = 1.4
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 40 LFLEEIENELKQLENKENLKADNNTEFKEENQDTKENQPNDLFSLPLPTQTTINGIKEFV 99
LF E +EN LK L+++ L+ + + Q KE NDL + IN + +
Sbjct: 274 LFNECLENSLKGLKDRCELEITHKKQEIALAQKEKEKHLNDLEDQKQILENKINALSDLE 333
Query: 100 EE 101
++
Sbjct: 334 QQ 335
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 26.2 bits (56), Expect = 1.4
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 32 PKENEEQTLFLEEIENELKQLENKENLKADNNTEFKEENQDTKENQPND 80
P E EE+T E +N+ K E + ++ NT+ ++ D K P +
Sbjct: 341 PLEKEEKTK--EISDNKEKAKETNSSAQSVQNTQASDKTSDNKSTTPKE 387
>ref|NP_222963.1| putative [Helicobacter pylori J99]
Length = 351
Score = 26.2 bits (56), Expect = 1.4
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 67 KEENQDTKENQPNDLFSLPLPTQ 89
KEEN++ K NQ ND ++ P Q
Sbjct: 71 KEENEENKINQANDSYAQKSPFQ 93
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 26.2 bits (56), Expect = 1.4
Identities = 18/74 (24%), Positives = 35/74 (46%), Gaps = 5/74 (6%)
Query: 46 ENELKQLENKENLKADNNTEFKEENQDTKENQPNDLFSLPLPTQTTINGIKEFVEEPVIE 105
E K+ + + +A + KE N++ K N+ + +T + +KE +EP+
Sbjct: 8 EKAPKRAKQEAKTEATQENKAKESNKENKNNKAKE--GKIKEAKTKESKVKETAKEPI-- 63
Query: 106 TEKKETSQNEPIQE 119
K+ S NE ++E
Sbjct: 64 -PVKKLSFNEALEE 76
Score = 24.3 bits (51), Expect = 5.4
Identities = 17/58 (29%), Positives = 29/58 (49%), Gaps = 2/58 (3%)
Query: 32 PKENEEQTLFLEEIENELKQLENKENLKADNNTEFKEENQDTKENQPNDLFSLPLPTQ 89
PK +++ EN+ K+ NKEN K + E K + TKE++ + P+P +
Sbjct: 11 PKRAKQEAKTEATQENKAKE-SNKEN-KNNKAKEGKIKEAKTKESKVKETAKEPIPVK 66
>ref|NP_222782.1| putative [Helicobacter pylori J99]
Length = 117
Score = 26.2 bits (56), Expect = 1.4
Identities = 14/46 (30%), Positives = 25/46 (53%)
Query: 30 GDPKENEEQTLFLEEIENELKQLENKENLKADNNTEFKEENQDTKE 75
G +++ Q L E +EN LK + ENL+ + E ++ N+ +E
Sbjct: 26 GAMQDDLGQKLKSEALENMLKIAHDLENLEQETQYEMRKINEQLEE 71
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 26.2 bits (56), Expect = 1.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 51 QLENKENLKAD-------NNTEFKEENQDTKENQ 77
Q EN+EN+ + NN KEE ++TKE +
Sbjct: 170 QKENQENMSENAPKDAQKNNKPLKEEKEETKEKE 203
>ref|NP_224123.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 879
Score = 25.8 bits (55), Expect = 1.9
Identities = 16/58 (27%), Positives = 22/58 (37%)
Query: 30 GDPKENEEQTLFLEEIENELKQLENKENLKADNNTEFKEENQDTKENQPNDLFSLPLP 87
G P E + NE + NL DN+T N + ++ ND S P P
Sbjct: 228 GTPSEVNSVLAKINGYINETDSISVSYNLTRDNSTRLLRPNTTSALSKANDPGSQPAP 285
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 25.8 bits (55), Expect = 1.9
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 15/92 (16%)
Query: 32 PKENEEQTLFLEEIENELKQLENKENLKADNNTEFKEENQDTKENQPNDLFSLPLPTQTT 91
PKE ++ EE + E + E K K + K + + E +P P P
Sbjct: 73 PKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPKPEPKPK-----PEPK--- 124
Query: 92 INGIKEFVEEPVIETEKKETSQNEPIQEKKER 123
VEEP E K+E + E +E KE+
Sbjct: 125 -------VEEPKKEEPKEEPKKEEAKEEAKEK 149
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 25.8 bits (55), Expect = 1.9
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 15/75 (20%)
Query: 195 LVQFSNNKENFA-LVQKADSSITANKAL--------------IRSLVGAYVLNRESITHI 239
L Q N +NF+ ++ K S + AN I+ L A + ES+ +
Sbjct: 33 LKQLQVNSKNFSNILTKIHSQVEANTLSQEGLRSVYEGQANKIKDLNNAILSQEESLRAL 92
Query: 240 EQHEKMRQNTIKEQS 254
+ ++++ NT+K+QS
Sbjct: 93 KASQEVQANTLKQQS 107
>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 649
Score = 25.4 bits (54), Expect = 2.4
Identities = 13/41 (31%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 39 TLFLEEIENELKQLENKENLKADNNTEFKEENQDTKENQPN 79
TL+ +++E E+K L N+ + N T K EN + N
Sbjct: 228 TLYFKDLEEEVKSLFNENEI---NGTLIKSENYQALNSLKN 265
>ref|NP_223695.1| PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN [Helicobacter pylori J99]
Length = 328
Score = 25.4 bits (54), Expect = 2.4
Identities = 19/84 (22%), Positives = 37/84 (43%), Gaps = 12/84 (14%)
Query: 234 ESITHIEQHEKMRQNTIKEQS------------SNEVWYEFEKLIAHYDSIYTNPLLTRK 281
E +T+ ++ E+ R N + ++ + E F K I HY + +K
Sbjct: 9 EKVTNSKELEEARLNALGKKGVFADKFNQLKNLNGEEKNAFAKEIHHYKQAFEKAFELKK 68
Query: 282 VKIANIYLDKDLAYIDIEVSLYHS 305
I + L++ L I+VSL+++
Sbjct: 69 KAIMELELEERLKKEKIDVSLFNA 92
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 25.0 bits (53), Expect = 3.2
Identities = 19/78 (24%), Positives = 36/78 (45%), Gaps = 10/78 (12%)
Query: 33 KENEEQTLFLEEIENELKQL--ENKENLKADNNTEF---KEENQDTKENQPNDLFSLPLP 87
KENE +EE+ +L+ + +N E K + T+ KE ++ KE ++ + P
Sbjct: 115 KENE-----IEEVVKKLQAITSQNLEGAKETSGTKEAPEKEVKKENKEKAKEEVKANKTP 169
Query: 88 TQTTINGIKEFVEEPVIE 105
T + +EP ++
Sbjct: 170 TTENLTSDNPLADEPDLD 187
Score = 24.3 bits (51), Expect = 5.4
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 31 DPKENEEQTLFLEEIENELKQLENKENLKADNNTEFKEENQDTKENQPNDLFSLPLPTQT 90
D + + + EE+E E+++L NK +AD +++ +D + +P + T
Sbjct: 182 DEPDLDYANMSAEEVEAEIERLLNKRQ-EADKERRAQKKQED--QAKPKQEVAPAKETPK 238
Query: 91 TINGIKEFVEEPVIETEKKETSQNE 115
T E + P ET+ K + E
Sbjct: 239 TETPKTETRKVPKAETKAKAKADTE 263
>ref|NP_223668.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
Length = 357
Score = 25.0 bits (53), Expect = 3.2
Identities = 15/67 (22%), Positives = 31/67 (45%), Gaps = 5/67 (7%)
Query: 288 YLDKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKKQEINFDSMSLNPTGFMVTSYDVT 347
Y++K+ + + L + L+S K F FKK + N + + GF+ + ++
Sbjct: 231 YIEKEFLQVPLNAWLSDTKRLKSFKG-----RFVFKKAKNNTTQKTCSLKGFIAKIFKLS 285
Query: 348 EIAIVNY 354
I + +Y
Sbjct: 286 NIDVKSY 292
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 25.0 bits (53), Expect = 3.2
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
Query: 35 NEEQTLFLEEIENELKQLENKENLKADNNTEFKEENQDTKENQPNDLFSLPLP---TQTT 91
NEE+ LEE++N +K + + K+ ++ K++ + +P+P T
Sbjct: 431 NEEEVKTLEEVKNIIKTPKPLQ----------KDLKKNAKKHTIKTQYCVPIPYIERLKT 480
Query: 92 INGIKEFVEEPVIETEKKETSQNEPIQEKKE 122
+G+++ + + KK+ N PI+E KE
Sbjct: 481 TDGLEK--HQKGLNNTKKQIQAN-PIEEIKE 508
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 25.0 bits (53), Expect = 3.2
Identities = 21/66 (31%), Positives = 36/66 (53%), Gaps = 13/66 (19%)
Query: 33 KENEEQTLFLEEIENE-------LKQLENKENLKADNNTEFKEENQDTKENQPNDLFSLP 85
+E E+ L E+ + E LK LEN++ LKA E K++N TK+ + + +P
Sbjct: 299 EEEREKKLLAEKEKQETELAKYKLKDLENQKKLKA-LEAELKKKN--TKKPR---VVEVP 352
Query: 86 LPTQTT 91
+P +T+
Sbjct: 353 IPPKTS 358
>ref|NP_223139.1| putative [Helicobacter pylori J99]
Length = 162
Score = 25.0 bits (53), Expect = 3.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 100 EEPVIETEKKETSQNEPIQEKKERIFKNFFSR 131
EEP+ + KK+ +++ + KE +F N +R
Sbjct: 122 EEPIAQEPKKDERESKEWLDSKEALFSNSKNR 153
>ref|NP_223334.1| putative [Helicobacter pylori J99]
Length = 263
Score = 24.6 bits (52), Expect = 4.1
Identities = 15/63 (23%), Positives = 29/63 (45%)
Query: 18 LELQTKRRMGLWGDPKENEEQTLFLEEIENELKQLENKENLKADNNTEFKEENQDTKENQ 77
+E++ R+ + +++ Q + + EI N+LKQ E N N ++ DT +
Sbjct: 201 VEIEEHRKNITFDHYRQSSAQNIKINEIANDLKQGEVVSNKLIANTLITQKAPSDTSHDD 260
Query: 78 PND 80
D
Sbjct: 261 DLD 263
>ref|NP_224181.1| putative [Helicobacter pylori J99]
Length = 367
Score = 24.3 bits (51), Expect = 5.4
Identities = 19/54 (35%), Positives = 27/54 (49%), Gaps = 11/54 (20%)
Query: 18 LELQTKRRMGL--WGDPK---------ENEEQTLFLEEIENELKQLENKENLKA 60
LE KR + L WG K +N + LF++EIE+ L + +E LKA
Sbjct: 241 LEESPKRLLNLFGWGFIKFFIMVSILIDNRVKYLFIDEIESGLHHTKMQEFLKA 294
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 24.3 bits (51), Expect = 5.4
Identities = 13/38 (34%), Positives = 19/38 (49%)
Query: 41 FLEEIENELKQLENKENLKADNNTEFKEENQDTKENQP 78
F EE E+E ++E L D N K ++ K N+P
Sbjct: 803 FSEEREHESVTYRHEEALDEDLNVAVKAFSKTPKRNEP 840
Score = 23.5 bits (49), Expect = 9.2
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 203 ENFALVQKADSSITANKALIRSLVGAYVLNRESITHIEQHE--------KMRQNTIKEQS 254
E+FA+ ++A I + L+G VLN I ++ E + N +K +S
Sbjct: 72 ESFAITREASKRILKMRHFDVQLIGGMVLNDGKIAEMKTGEGKTLVATLAVALNAMKGES 131
Query: 255 SNEVWYEFEKLIAHYDSIYTNPL 277
V +AH DS PL
Sbjct: 132 VYVV--TVNDYLAHRDSKEMEPL 152
>ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobacter pylori J99]
Length = 414
Score = 24.3 bits (51), Expect = 5.4
Identities = 18/65 (27%), Positives = 29/65 (43%), Gaps = 3/65 (4%)
Query: 46 ENELKQLENKENLKADNNTEFKEENQDTKENQPNDLFSLPLPTQTTINGIKEFVEEPVIE 105
E L QL+ +E DNN ++E + + + FS + + +K F P IE
Sbjct: 154 EGFLFQLDGRE---LDNNELYEETRKIILNLEKHHEFSKDFYYEKALKILKSFKNPPAIE 210
Query: 106 TEKKE 110
+KE
Sbjct: 211 FLEKE 215
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 24.3 bits (51), Expect = 5.4
Identities = 27/101 (26%), Positives = 45/101 (43%), Gaps = 11/101 (10%)
Query: 22 TKRRMGLWGDPKENEEQTLFLEEIENELKQLE-NKENLKADNNTEFKEENQDTKENQPND 80
TK+ M KE++E+ +E E K LE +K N K + +E NQ++ N+P+
Sbjct: 315 TKKAMEFEEREKEHDERDE--KETEERRKALEMDKGNEKVNAKENEREINQES-ANEPSS 371
Query: 81 LFSLPLPTQTTINGIKEFVEEPVIETEKKETSQNEPIQEKK 121
+ L + +KE KKE + +EK+
Sbjct: 372 ENNATLKDTENTSVLKE-------SAAKKEAPKPSSKEEKR 405
>ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori J99]
Length = 773
Score = 24.3 bits (51), Expect = 5.4
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 12/49 (24%)
Query: 34 ENEEQTLFLEEIENELKQLENKENLKADNNTEFKEENQDTKENQPNDLF 82
EN++ FLEE+EN K+ N + K E PNDL+
Sbjct: 684 ENKDILAFLEEVENYAKKGANIQRYKG------------LGEMNPNDLW 720
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 24.3 bits (51), Expect = 5.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 33 KENEEQTLFLEEIENELKQLENKEN 57
KEN+ T L+++E+ K LEN N
Sbjct: 209 KENQRLTDKLKQLESAQKSLENTNN 233
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 23.9 bits (50), Expect = 7.1
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 21/139 (15%)
Query: 40 LFLEEIENEL----------KQLENKENLKADNNTEFKEENQDTKENQPNDLFSLPLPTQ 89
LFLE E ++ E +K FKE + +++P +L PTQ
Sbjct: 421 LFLEFFEKDIFNTPYKLEVINATEGGARIKGTKEMPFKEVCEKIDKSKPKPPINLIYPTQ 480
Query: 90 T----TINGIKEFVEEPVIETEKKETSQNEPIQEKKERIFKNFFSRIG--FDKSIAPTML 143
+ + K+ EE + +K+T E + E F ++ +K+ +
Sbjct: 481 SEQAKNLKIAKKKCEEIIKYANEKKTQVEEAFLKVAE-----FLEKVEKLHEKNKLEELD 535
Query: 144 FEEVRDASVIYHLEKKLGD 162
FEE+ + S K+L D
Sbjct: 536 FEELENLSAEIDNVKELFD 554
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 23.5 bits (49), Expect = 9.2
Identities = 13/32 (40%), Positives = 18/32 (55%)
Query: 41 FLEEIENELKQLENKENLKADNNTEFKEENQD 72
F E+ EL++LEN N K EF EE+ +
Sbjct: 645 FFEKETKELEELENALNEKEALLDEFIEEHSN 676
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 23.5 bits (49), Expect = 9.2
Identities = 31/148 (20%), Positives = 59/148 (38%), Gaps = 21/148 (14%)
Query: 34 ENEEQTLFLEEIENELKQLENKENLKADNNTEFKEENQDTKENQPNDLFSLPLPTQTTIN 93
+N + F E EL+QLE +E + T ++ + K N F + + ++
Sbjct: 47 KNSAKDDFSEAFGGELQQLEEEEYYEKKELTLYQTHDIKIKSNAYKRFFEVKV--DEDLS 104
Query: 94 GIKEFVEEPVIETEKKETSQNEPIQEKKER------IFKNFFSRIGFDKSIAPTMLFEEV 147
I+ ++E I + +E Q E KER +F++F + ++E +
Sbjct: 105 KIEIILDECFIVLDTEEYYQ-EMFAYIKERLAFEGVVFRHF------------SQMYENL 151
Query: 148 RDASVIYHLEKKLGDYIFYVACFFFGTT 175
+ Y E + +I Y + F T
Sbjct: 152 KTELRKYQKEAQNKRFILYASPTFIPNT 179
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 23.5 bits (49), Expect = 9.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 15 LKNLELQTKRRMGLWGDPKENEEQTLFLEEIENELKQLENKENLK 59
L+N+E G+ +PK + E I N L+ +EN +NL+
Sbjct: 112 LQNIEKIVMLSGGVASNPKLAQALEKMQEPITNPLELVENLKNLE 156
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.134 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,966
Number of Sequences: 1491
Number of extensions: 20623
Number of successful extensions: 167
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 73
length of query: 366
length of database: 494,079
effective HSP length: 79
effective length of query: 287
effective length of database: 376,290
effective search space: 107995230
effective search space used: 107995230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)