BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645069|ref|NP_207239.1| VirB4 homolog [Helicobacter
pylori 26695]
(807 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 485 e-138
ref|NP_223635.1| DNA transfer protein [Helicobacter pylori ... 387 e-109
ref|NP_223636.1| DNA transfer protein [Helicobacter pylori ... 103 1e-23
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 95 6e-21
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 40 3e-04
ref|NP_222801.1| putative [Helicobacter pylori J99] 30 0.24
ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacte... 29 0.54
ref|NP_223388.1| putative [Helicobacter pylori J99] 28 0.92
ref|NP_223191.1| cag island protein, DNA transfer protein [... 28 0.92
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 28 1.2
ref|NP_223645.1| putative [Helicobacter pylori J99] 28 1.2
ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter ... 27 1.6
ref|NP_224033.1| FLAGELLUM-SPECIFIC ATP SYNTHASE [Helicobac... 27 1.6
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 27 1.6
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 27 1.6
ref|NP_223263.1| 8-amino-7-oxononanoate synthase [Helicobac... 27 2.0
ref|NP_223192.1| cag island protein, DNA transfer protein [... 27 2.0
ref|NP_223056.1| transketolase [Helicobacter pylori J99] 27 2.0
ref|NP_222847.1| putative [Helicobacter pylori J99] 27 2.7
ref|NP_223490.1| putative [Helicobacter pylori J99] 26 3.5
ref|NP_223401.1| putative [Helicobacter pylori J99] 26 3.5
ref|NP_223085.1| HOLLIDAY JUNCTION DNA HELICASE RUVB [Helic... 26 3.5
ref|NP_222785.1| UREASE ACCESSORY PROTEIN [Helicobacter pyl... 26 3.5
ref|NP_222783.1| putative [Helicobacter pylori J99] 26 3.5
ref|NP_222772.1| putative [Helicobacter pylori J99] 26 3.5
ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 26 4.6
ref|NP_224181.1| putative [Helicobacter pylori J99] 25 6.0
ref|NP_224153.1| putative [Helicobacter pylori J99] 25 6.0
ref|NP_223810.1| glucose-6-phosphate isomerase [Helicobacte... 25 6.0
ref|NP_223117.1| putative [Helicobacter pylori J99] 25 6.0
ref|NP_222993.1| putative [Helicobacter pylori J99] 25 6.0
ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter ... 25 7.8
ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE ... 25 7.8
ref|NP_223761.1| putative [Helicobacter pylori J99] 25 7.8
ref|NP_223748.1| putative lipopolysaccharide biosynthesis p... 25 7.8
ref|NP_223579.1| stress protein [Helicobacter pylori J99] 25 7.8
ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobac... 25 7.8
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 25 7.8
ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Heli... 25 7.8
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 25 7.8
ref|NP_222756.1| DNA transformation competancy [Helicobacte... 25 7.8
ref|NP_222738.1| putative [Helicobacter pylori J99] 25 7.8
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 485 bits (1249), Expect = e-138
Identities = 289/808 (35%), Positives = 466/808 (56%), Gaps = 45/808 (5%)
Query: 3 EKIFNSLCSLVPKRYNMKEETNIVGIYNEHYLLSEKSNLVGALKLEGISYLSLDDKEIAQ 62
+K+ N ++PK Y+M EE NI+G+Y+EH+LL++ NLVG L+LEG+SY L +++
Sbjct: 11 QKVSNYFLGVLPKSYSMSEENNILGLYDEHFLLTKNENLVGILRLEGVSYTHLSTEQLQD 70
Query: 63 KFNERILALNEIVDGVHFKIVVKRRKIFMHHEYTQEEISNPFALE-VINLWEQGVEDVYQ 121
F ER +AL+ + + V ++VVKRRKI +Y Q S+ L+ ++N +E ++VY+
Sbjct: 71 LFTERQMALDSL-EKVVARLVVKRRKI----DYKQSIQSDSQYLQAILNQFEN--KEVYE 123
Query: 122 NFYYLIFETKNDSIKGYLERFKKKITTNELENIQENNRQDEVKYQENYFIGFDNFNLLDK 181
N Y+L+ E+ + S+ G LE KK EN + D + Y K
Sbjct: 124 NQYFLVLESTH-SLHGVLEHKKKSFMHANRENFK-----DILSY---------------K 162
Query: 182 SKILYSIINNVKNMLSGLFVEKIDANSLLNFYAEYINGVPSEYT-FARGRLHDGMINSDV 240
+ L + +++ L + +++ +LNFYAEYING G L D I S +
Sbjct: 163 AHFLQETLKSLEIQLKNYAPKLLNSKEVLNFYAEYINGFELPLKPLVGGYLSDSYIASSI 222
Query: 241 HFKKDFFTHIHNGKEIFKRFISIKTYDIDKIVSTALSSVLHLSLEFDVILNIDNIPKAKA 300
F+KD+F ++ + R I IK Y+ ++I S A+ ++L+ D+I +I+ + K
Sbjct: 223 TFEKDYFIQESFNQKTYNRLIGIKAYESERITSIAVGALLYQETPLDIIFSIEPMSVNKT 282
Query: 301 EKRIETKRKRANKS-IRVEIDELNDMIKTDRVLMQEISLNILVHAKTKTDLDSACIEITN 359
++ + K + + ++ E+ E +++KT R+ MQ+ +LN+L+ A + DLD+ I
Sbjct: 283 LSFLKERAKFSMSNLVKNELLEYQELVKTKRLSMQKFALNVLIKAPSLEDLDAQTSLILG 342
Query: 360 LLKQKGIVSTQESIGMLPMFFSFFPNRNRLNFRKRLLSSQNIASLIILEKQNCGFSRNSW 419
LL ++ +V E+ G+ +FSFFP R LN R R L+S+ +A L++ E+QN GF NSW
Sbjct: 343 LLFKENLVGVIETFGLKGGYFSFFPERIHLNHRLRFLTSKALACLMVFERQNLGFKANSW 402
Query: 420 GDRHLTIFRNQDKSPYLFNFHAYEAKRKN----DMVSGHTIIFGGTGAGKTTLIEFLITN 475
G+ L++F+N D SP+LFNFH E N V+GHT++ G TG+GK+TLI +L+ +
Sbjct: 403 GNSPLSVFKNLDYSPFLFNFHNQEVSHNNAKEIARVNGHTLVIGATGSGKSTLISYLMMS 462
Query: 476 CFKYEDLSILALDRNNGMRVMTEFLDGQYNDSNDFYINPFSLKDTSANCTFLVSWLAFML 535
KY+++ +LA DR G+ TEF G Y+D F INPF L+ N FL S+ ML
Sbjct: 463 ALKYQNMRLLAFDRMQGLYSFTEFFKGHYHDGQSFSINPFCLEPNLQNLEFLQSFFLSML 522
Query: 536 NIDEDTKDEKEKKTLSALSKTIRVCYNNITKQGGAIFKLRDFKDTLEIDYLDSKDI-LEK 594
++ ++D++ + ++A+S I+ Y + + F L DFK+TL+ + + LE
Sbjct: 523 DL-APSRDKEALEDMNAISGAIKSLYETLYPKD---FSLLDFKETLKRTSSNQLGLSLEP 578
Query: 595 ESSKDLYKHSTDCLDFAKKLSVIDMDALSSSKKDFNLAVLYLFYKVMNRAKLENKPFYIF 654
+ L+ D + L+VI++DA++ + KD L YLFYK++ ++ + F +F
Sbjct: 579 YLNNPLFNALNDAFNSNAFLNVINLDAITQNPKDLGLLAYYLFYKILEESRKNDSGFLVF 638
Query: 655 IDEAKSVIENPIMLAKIKDTLAQARKLNGVLTLAFQDINQLDGVEGAKSIIENAAQVILY 714
+DE KS +EN ++ KI + QARK NGV+ LA QDI QL GV+ A S + N +ILY
Sbjct: 639 LDEFKSYVENDLLNTKINALITQARKANGVVVLALQDIYQLSGVKNAHSFLSNMGTLILY 698
Query: 715 PTNNFEKLE-SYGILLSPIEKSFLNKTPLNARQVLVKNLLTQSSVFLEINLEKLNSTSKK 773
P N +L+ ++ + LS E SFL TPL ARQVLVKNL SS ++++LE L
Sbjct: 699 PQKNARELKHNFNVPLSETEISFLENTPLYARQVLVKNLGNGSSNMIDVSLEGLGC---- 754
Query: 774 FLRAYNSSASSVFELETLKKDNPKDYKE 801
+L+ +NS +S V +++ L+KD P +++E
Sbjct: 755 YLKIFNSDSSHVNKVKALQKDYPTEWRE 782
>ref|NP_223635.1| DNA transfer protein [Helicobacter pylori J99]
Length = 475
Score = 387 bits (994), Expect = e-109
Identities = 207/463 (44%), Positives = 292/463 (62%), Gaps = 7/463 (1%)
Query: 204 IDANSLLNFYAEYINGVPSEYTFARGRLHDGMINSDVHFKKDFFTHIHNGKEIFKRFISI 263
+ ++ LLN YAEY NG ++ + + RL DG I S ++FKKD F H +NG E FKRFI++
Sbjct: 13 LSSDDLLNLYAEYCNGHYCDFKYKQRRLSDGNIQSHLYFKKDHFIHDYNGIETFKRFIAV 72
Query: 264 KTYDIDKIVSTALSSVLHLSLEFDVILNIDNIPKAKAEKRIETKRKRANKSIRVEIDELN 323
K YD+D I S ALS++L D++L I+ + K +A I ++KR+ I+ L
Sbjct: 73 KAYDVDNITSLALSNLLCEKFNLDILLTIEAMDKERALFFIRERKKRSKDISYQNIEYLE 132
Query: 324 DMIKTDRVLMQEISLNILVHAKTKTDLDSACIEITNLLKQKGIVSTQESIGMLPMFFSFF 383
M+ TDR +Q++SL+I+V A +K +LD I + N LK++G + ESI M P+FFSFF
Sbjct: 133 QMVSTDRAQIQKVSLSIMVFANSKKELDKKSIIVYNTLKKEGFSAVLESINMRPIFFSFF 192
Query: 384 PNRNRLNFRKRLLSSQNIASLIILEKQNCGFSRNSWGDRHLTIFRNQDKSPYLFNFHAYE 443
P RN LN R R +SQNIASLI+ EK GF NSWGD +++F+NQ+ S + FNF A +
Sbjct: 193 PERNFLNSRLRPQTSQNIASLIMFEKYQEGFKENSWGDCPVSVFKNQNGSAHFFNFQAKQ 252
Query: 444 AKRKNDMVSGHTIIFGGTGAGKTTLIEFLITNCFKYEDLSILALDRNNGMRVMTEFLDGQ 503
K KND V GHT+I G TG+GK+T I FLI N D+S++ALDR NG+ +MT+F +GQ
Sbjct: 253 GKDKNDNVVGHTMIIGSTGSGKSTFISFLIANLLTKYDMSVVALDRMNGLEIMTDFFEGQ 312
Query: 504 YNDSN---DFYINPFSLKDTSANCTFLVSWLAFMLNIDEDTKDEKEKKTLSALSKTIRVC 560
YN +N FYINPFSLKD+ N FL +W+ FMLNID D ++++ K ++ K IR
Sbjct: 313 YNTANTDGGFYINPFSLKDSEENRQFLANWIKFMLNIDSD--NQQDNKASQSIDKVIRDT 370
Query: 561 YNNITKQGGAIFKLRDFKDTLEIDYLDSKDILEKESSKDLYKHSTDCLDFAKK-LSVIDM 619
YN + Q I L + L D +IL+ + K +K+ DCLDF+ LSVI+M
Sbjct: 371 YNYMGDQKNQI-NLLEIAKNLGSSEQDFNEILKSQGEKIYFKNFQDCLDFSNSPLSVINM 429
Query: 620 DALSSSKKDFNLAVLYLFYKVMNRAKLENKPFYIFIDEAKSVI 662
DA ++ KK L +YLF+K+ AK NKPF+ + + K+ +
Sbjct: 430 DAFANDKKLMGLIAMYLFHKLFFEAKEHNKPFFYSLMKLKTTL 472
>ref|NP_223636.1| DNA transfer protein [Helicobacter pylori J99]
Length = 140
Score = 103 bits (258), Expect = 1e-23
Identities = 54/106 (50%), Positives = 79/106 (73%), Gaps = 2/106 (1%)
Query: 664 NPIMLAKIKDTLAQARKLNGVLTLAFQDINQLD--GVEGAKSIIENAAQVILYPTNNFEK 721
+PIM A I + LAQARK+NG L +AFQ I+Q+ G++ AKS+I N +QVI+YPT + ++
Sbjct: 2 HPIMFAYIANALAQARKINGTLCMAFQKISQVKELGIDKAKSLIGNLSQVIIYPTKDTDE 61
Query: 722 LESYGILLSPIEKSFLNKTPLNARQVLVKNLLTQSSVFLEINLEKL 767
L G+ LS E +FL+ T + ARQVLVKN++T +S F+EI+L+K+
Sbjct: 62 LIECGVPLSDSEINFLHNTDMRARQVLVKNIVTNASAFIEIDLKKI 107
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 95.1 bits (235), Expect = 6e-21
Identities = 184/872 (21%), Positives = 338/872 (38%), Gaps = 122/872 (13%)
Query: 4 KIFNSLCSLVPKR-------YNMKEETNIVGIYNEHY------------LLSEKSNLVGA 44
K F S+ S+ P + N E +V N + +L+ +L+G
Sbjct: 127 KAFMSIFSMKPSKEMANDIHLNPNREDRLVSAANSYLANNYECFLDDGVILTNNYSLLGT 186
Query: 45 LKLEGISYLSLDDKEIAQKFNERILALNEIVDGVHFKIVVKRRKIFMH---HEYTQEEIS 101
+KL GI +L+ K++ + L+ + V V K + H + +E +
Sbjct: 187 IKLGGIDFLTTSKKDLIE--------LHASIYSVFRNFVTPEFKFYFHTVKKKIVIDETN 238
Query: 102 NPFALEVINLW------EQGVEDVYQNFYYLIFE-----TKNDSIKGYLERFKKKITTNE 150
+ L N + +Q E Y +YL E T N+ + KK N
Sbjct: 239 RDYGLIFSNDFMRAYNEKQKRESFYDISFYLTIEQDLLDTLNEPVMN-----KKHFADNN 293
Query: 151 LENIQE------NNRQDEVKYQENYFIGFDNFNLLDKSK--ILYSIINNVKNMLSGLFVE 202
E Q N +D ++ E + L + +K I+YS N L G+
Sbjct: 294 FEEFQRIIRAKLENFKDRIELIEELLSKYHPTRLKEYTKDGIIYSKQCEFYNFLVGMNEA 353
Query: 203 KIDANSLLNFYAEYINGVPSEYTFARGRLHDGMINSDVHFKKDFFTHIHNGKEIFKRFIS 262
N + E ++G E FA H ++N D+ K +F+ I EI +
Sbjct: 354 PFICNRKDLYLKEKMHGGVKEVYFANK--HGKILNDDLSEK--YFSAI----EISEYAPK 405
Query: 263 IKTYDIDKIVSTALSSVLHLSLEFDVILNIDNIPKAKAEKRIETKR---KRANKSIRVEI 319
++ DKI + L F + N K + ++R +K + +
Sbjct: 406 SQSDLFDKI------NALDSEFIFMHAYSPKNSQVLKDKLAFTSRRIIISGGSKEQGMTL 459
Query: 320 DELNDMIKTDRVLMQEISLNILVHAKTKTDLDSACIEITNLLKQKGIVSTQESIGMLPMF 379
L++++ + + ++++ A + + + E + L KG ++ + M F
Sbjct: 460 GCLSELVGNGDITLGSYGNSLVLFADSFEKMKQSVKECVSSLNAKGFLANAATFSMENYF 519
Query: 380 FSFFPNRNRLNFRKRLLSSQNIASLIILEKQNCGFSR--NSWGDRHLTIFRNQDKSPYLF 437
F+ + L F + +S N A I + + N+WG+ +T+ +++ SP+
Sbjct: 520 FAKHCSFITLPFIFDV-TSNNFADFIAMRAMSFDGKEDNNAWGNSVMTL-KSEINSPFYL 577
Query: 438 NFHAYEAKRKNDMVSGHTIIFGGTGAGKTTLIEFLITNCFKY------------EDLSIL 485
NFH +GHT+I G TG+GKT + + ++ + L+++
Sbjct: 578 NFHM--PTDFGSASAGHTLILGSTGSGKTVFMSMTLNAMGQFAYNFPANISKDKQKLTMV 635
Query: 486 ALDRNNGMRVMTEFLDGQYND---SNDFYINPFS----LKDTSAN------CTFLVSWLA 532
+D++ G + G+Y D +NPF+ ++ T+A +V L
Sbjct: 636 YMDKDYGAYGNIVAMGGEYVKIELGTDTGLNPFAWAACVQKTNATMEQKQTAISVVKELV 695
Query: 533 FMLNIDEDTKDEKEKKTLSAL--SKTIRVCYNN-ITKQGGAIFKLRDFKDTLEIDYLDSK 589
L D KDE +L S T+ N IT + + + D+ D
Sbjct: 696 KNLATKSDEKDENGNSISFSLADSNTLAAAVTNLITGDMNLDYPITQLINAFGKDHNDPN 755
Query: 590 DILEK-----ESSKDLYK-----HSTDCLDFAKKLSVIDMDALSSSKKDFNLAVLYLFYK 639
++ + +S+ ++ +TD LDF+K + +D + + YLF +
Sbjct: 756 GLVARLAPFCKSTNGEFQWLFDNKATDRLDFSKTIIGVDGSSFLDNNDVSPFICFYLFAR 815
Query: 640 VMNRAKLENKPFYIFIDEAKSVIENPIMLAKIKDTLAQARKLNGVLTLAFQDINQLDGVE 699
+ ++ + F + IDEA + +P + ++D L ARK N ++ LA Q I L
Sbjct: 816 IQEA--MDGRRFVLDIDEAWKYLGDPKVAYFVRDMLKTARKRNAIVRLATQSITDLLACP 873
Query: 700 GAKSIIENAAQVILYPTNNFEKLESYGILLSPIEKSFLNKTPLNARQVLVKNLLTQSSVF 759
A +I E I + N+ L Y L + EK F T R++L K SV
Sbjct: 874 IADTIREQCPTKI-FLRNDGGNLSDYQRLANVTEKEFEIITKGLDRKILYKQ-DGSPSVI 931
Query: 760 LEINLEKLNSTSKKFLRAYNSSASSVFELETL 791
NL + K++L+ ++ V E++ +
Sbjct: 932 ASFNLRGI---PKEYLKILSTDTVFVKEIDKI 960
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 39.7 bits (91), Expect = 3e-04
Identities = 57/236 (24%), Positives = 100/236 (42%), Gaps = 35/236 (14%)
Query: 100 ISNPFALEVINL-WEQGVEDVYQNFYY----LIFETKNDSIK---------GYLERFKKK 145
I+N AL++ L +E+ +E +N Y L+F+ KN+ K G+L F KK
Sbjct: 361 ITNQDALKLYQLIFERTIESQGKNAIYDKQDLLFKIKNEYFKCSVKGLKSAGFLAMFSKK 420
Query: 146 ITTNELENIQENNRQDEVKYQENYFIGFDNFNLLDKSKILYSII--NNVKNMLSGLFVEK 203
ELEN + N+ +D + ++N ++L + ++ S I N FV+
Sbjct: 421 ----ELENDESNDDKDNKEKEQNAQFNLKIDDVLSLNDLVLSTIKRNAPSAYKEADFVKL 476
Query: 204 IDANSLLNFYAEYINGVPSEYTFARGRLHDGMINSDVHFKKDFFTHIHNGKEIFKRFISI 263
++ + G PS Y L S KK T H GK + + F +
Sbjct: 477 LENKGI---------GRPSTYASYLPTLVKREYISISQDKKHIITPTHKGKRVVEVFENA 527
Query: 264 KTYDIDKIVSTALSSVLHLSLE-----FDVILNIDN-IPKAKAEKRIETKRKRANK 313
+ ID + + VL +E D I N+++ PK + +R + + K +++
Sbjct: 528 YQFIIDLTYTKQMEEVLDEIVENKSSYVDFISNLNSKCPKIEKLERNDDEIKPSSE 583
>ref|NP_222801.1| putative [Helicobacter pylori J99]
Length = 450
Score = 30.0 bits (66), Expect = 0.24
Identities = 33/120 (27%), Positives = 54/120 (44%), Gaps = 15/120 (12%)
Query: 34 LLSEKSNLVGALKLEGISYLSLDDKEIAQKFNERILALNEIVDGVHFKIVVKRRKIFMHH 93
++ ++ L A K+ I LSL+D E A F E +++D K+ + +KI H
Sbjct: 346 IIGKRKFLKDAQKI--IPTLSLEDLEYAHGFGE---VRPQVLDRTKRKLELGEKKICTHK 400
Query: 94 EYTQEEISNPFALEVINLWEQGVEDVYQNFYYLIFETKNDSIKGYLERFKKKITTNELEN 153
T +P A + + + D + YL +S + LERF K ++ ELEN
Sbjct: 401 GITFNMTPSPGATSCL---QNALVDSQEIAAYL-----GESFE--LERFYKDLSPEELEN 450
>ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacter pylori J99]
Length = 469
Score = 28.9 bits (63), Expect = 0.54
Identities = 15/35 (42%), Positives = 20/35 (56%), Gaps = 1/35 (2%)
Query: 453 GHTIIFGGTGAGKTTLIEFLITN-CFKYEDLSILA 486
G +FGG G GKT +I LI N +K+ S+ A
Sbjct: 149 GKVGLFGGAGVGKTVIIMELIHNVAYKHNGYSVFA 183
>ref|NP_223388.1| putative [Helicobacter pylori J99]
Length = 192
Score = 28.1 bits (61), Expect = 0.92
Identities = 16/31 (51%), Positives = 20/31 (63%), Gaps = 1/31 (3%)
Query: 443 EAKRKNDMVSGHTIIF-GGTGAGKTTLIEFL 472
E+ + N+ TI F G TGAGK+TLIE L
Sbjct: 56 ESLKNNEEWENFTIAFYGETGAGKSTLIECL 86
>ref|NP_223191.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 748
Score = 28.1 bits (61), Expect = 0.92
Identities = 50/231 (21%), Positives = 90/231 (38%), Gaps = 40/231 (17%)
Query: 526 FLVSWLAFMLN-IDEDT--------------KDEKEKKTLSALSKTIRVCYNNITKQGGA 570
F + +A +N IDEDT +++K L ALS R +NN GGA
Sbjct: 401 FFIGSMASGINLIDEDTNMEKVVSLMEFFGGEEDKSGDNLRALSPATRNMWNNFKTMGGA 460
Query: 571 IFKLRDFKDTLEIDYLDSKDILEKESSKDLYKHSTDCLDFAK-KLSVIDMDALSSSKKDF 629
+ + + + + + S + DF + ++ + + +++ K+
Sbjct: 461 KETYSSVQGVYTSAFAPYNNAMIRNFT------SANDFDFRRLRIDAVSIGVIANPKEST 514
Query: 630 NLA-VLYLFYKVMNRAKLENKPFYIFIDEAKSVIENPIMLAKIKDTLAQA----RKLNGV 684
+ +L LF+ VM + L + ++ + L +T +A + N
Sbjct: 515 IVGPILELFFNVMIYSNLILPIHDPQCKRSCLMLMDEFTLCGYLETFVKAVGIMAEYNMR 574
Query: 685 LTLAFQDINQLD-------GVEGAKSIIENAAQVILYPTNN------FEKL 722
FQ QL+ G GAK+I++N + + Y NN FEKL
Sbjct: 575 PAFVFQSKAQLENDPPLGYGRNGAKTILDNLSLNMYYGINNDNYYEHFEKL 625
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 27.7 bits (60), Expect = 1.2
Identities = 34/149 (22%), Positives = 56/149 (36%), Gaps = 30/149 (20%)
Query: 461 TGAGKTTLIEFLITNCFK--YEDL-------SILALDRNNGMRVMTEFLDGQYNDSNDFY 511
TG+GKT ++ LI C+K Y++ SIL + N T+ + +Y S +
Sbjct: 6 TGSGKTLVMAGLILECYKQGYQNFIFFVNSASILEKTKLN----FTDSVSSKYLFSENIN 61
Query: 512 INPFSLKDTSANCTFLVSWLAFMLNIDEDTKDEKEKKTLSALSKTIRVCYNNITKQGGAI 571
IN + + S N +E ++ TI+ ++ T+
Sbjct: 62 INDENTEIKSIN-----------------NLNESHNNAINIYFSTIQGLFSLFTRAKENA 104
Query: 572 FKLRDFKDTLEIDYLDSKDILEKESSKDL 600
L D KD + D L E+ K L
Sbjct: 105 ITLEDLKDQKLVFLADEAHHLNTETKKKL 133
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 27.7 bits (60), Expect = 1.2
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 546 EKKTLSALSKTIRVCYNNITKQ-GGAIFKLRDFKDTLEIDYLDSKDILEKE 595
E+K + ++KT+ N++TKQ G +K + L + DSKD EKE
Sbjct: 1378 EQKRMGLVNKTLIAVPNHLTKQWGDEFYKAYPNANVLVV---DSKDTTEKE 1425
Score = 27.3 bits (59), Expect = 1.6
Identities = 27/111 (24%), Positives = 48/111 (42%), Gaps = 13/111 (11%)
Query: 690 QDINQLDGVEGAKSIIENAAQVILYPTNNFEKLESYGILLSPIEKSFLNKTPLNARQVLV 749
Q++ L+ ++ + II ++ LY N E + I + +E L + + ++
Sbjct: 2073 QELKDLETLQRSV-IIPTHTEIKLYDLKNEESKDYELIKVKEVEP--LKENASMSEELTH 2129
Query: 750 KNLLTQSSVFLEINLEKLNSTSKKFLRAYNSSASSVFELETLKKDNPKDYK 800
K L Q+ E N EKL++ K+F L TL + +DYK
Sbjct: 2130 KKLKEQNKQIAEQNKEKLDAIKKQF----------ASNLNTLFVNEEEDYK 2170
>ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter pylori J99]
Length = 533
Score = 27.3 bits (59), Expect = 1.6
Identities = 19/66 (28%), Positives = 33/66 (49%), Gaps = 1/66 (1%)
Query: 152 ENIQENNRQDEVKYQENYFIGFDNFNLLDKSKILYSIINNVKNMLSGLFVEKIDANSLLN 211
+NI + ++++ E + FD NL +KS +L S + KN L ++K + SL
Sbjct: 431 DNIVAAHFGEDLEEIEGFLERFDKANLKEKSLMLES-LKKSKNTAIALELKKKEKKSLKK 489
Query: 212 FYAEYI 217
Y E +
Sbjct: 490 VYKEEV 495
>ref|NP_224033.1| FLAGELLUM-SPECIFIC ATP SYNTHASE [Helicobacter pylori J99]
Length = 434
Score = 27.3 bits (59), Expect = 1.6
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 457 IFGGTGAGKTTLIEFLITNCFKYEDLSILALDRNNGMRVMTEFLD 501
IF G+G GK+TL+ + C + ++AL G R + EF++
Sbjct: 162 IFAGSGVGKSTLMGMITRGCL--APIKVIALIGERG-REIPEFIE 203
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 27.3 bits (59), Expect = 1.6
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 692 INQLDGVEGAKSIIENAAQVILYPTNNFEKLESYGILLSPIEKSFLNKTPL 742
I + GVEG + EN+AQ ++FE ++Y + EK KTPL
Sbjct: 98 ITRFFGVEGLMHVRENSAQ------SSFESADTYLNITLNDEKKLSLKTPL 142
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 27.3 bits (59), Expect = 1.6
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 683 GVLTLAFQDINQLDGVEGAKSIIENAAQVILYPTNNFEKLESYGILLSPIEKSFLN---- 738
G+L L++ ++ D +++ L N +EK+ YGI + + SF N
Sbjct: 1772 GILNLSYMNLFGGDKKASVYDVLQAQNIDGLRGNNGYEKIRFYGIQIEKADYSFNNGVHS 1831
Query: 739 ---KTPLNARQVLVKNL 752
PLN + + + L
Sbjct: 1832 WSFTNPLNTTETITETL 1848
>ref|NP_223263.1| 8-amino-7-oxononanoate synthase [Helicobacter pylori J99]
Length = 373
Score = 26.9 bits (58), Expect = 2.0
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 5 IFNSLCSLVPKRYNMKEETNIVGIYNEHYLLSEKSNLVGALKLEGIS 51
IF +L P + E N + N Y L EK LVGA++ +S
Sbjct: 290 IFETLGVRTPTGFFTLEFENNPALLNAQYFLKEKGFLVGAIRPPTVS 336
>ref|NP_223192.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 330
Score = 26.9 bits (58), Expect = 2.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 441 AYEAKRKNDMVSGHTIIFGGTGAGKTTLIEFLI 473
A A + + + I+ GGTG+GKTT I+ ++
Sbjct: 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIM 192
>ref|NP_223056.1| transketolase [Helicobacter pylori J99]
Length = 641
Score = 26.9 bits (58), Expect = 2.0
Identities = 15/43 (34%), Positives = 27/43 (61%), Gaps = 1/43 (2%)
Query: 30 NEHYLLSEKSNL-VGALKLEGISYLSLDDKEIAQKFNERILAL 71
NE +++S K+ + +K+ GIS +L +K ++ K E+I AL
Sbjct: 283 NESFIISPKNKMHFEEVKVRGISLEALWEKSLSPKTKEKIHAL 325
>ref|NP_222847.1| putative [Helicobacter pylori J99]
Length = 481
Score = 26.6 bits (57), Expect = 2.7
Identities = 21/64 (32%), Positives = 31/64 (47%), Gaps = 3/64 (4%)
Query: 17 YNMKEETNIVGIYNEHYLLSEKSNLVGALKLEGISYLSLDDKE-IAQKFNERILALNEIV 75
YN+ +E NI I + + SE+ L LK +GI D E I Q NE ++ +V
Sbjct: 99 YNLAKEKNIKRILKQKSMASEEIGLNHYLKEKGIQAQETDLGELIIQLINEH--PVHIVV 156
Query: 76 DGVH 79
+H
Sbjct: 157 PAIH 160
>ref|NP_223490.1| putative [Helicobacter pylori J99]
Length = 296
Score = 26.2 bits (56), Expect = 3.5
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 580 TLEIDYLDSKDILEKESSKDLYKHSTDCLDFAKKLSVIDMD 620
T+E LD+ +I + L KHSTD LD K ID+D
Sbjct: 238 TIENKALDTMEI--SKCQMVLKKHSTDKLDSQHKAISIDLD 276
>ref|NP_223401.1| putative [Helicobacter pylori J99]
Length = 419
Score = 26.2 bits (56), Expect = 3.5
Identities = 23/117 (19%), Positives = 48/117 (40%), Gaps = 4/117 (3%)
Query: 42 VGALKLEGISYLSLDDKEIAQKFNERILALNEIVDGVHFKIVVKRRKIFMHHEYTQEEIS 101
VGA+K D E QK+ +I+A N + D ++V+ + + E +S
Sbjct: 185 VGAVKNRLFVEFFDKDLEDGQKYRYQIIAENFMGDKSRPSVIVEGKTKDLPKEIANVRVS 244
Query: 102 NPFALEVINLWEQGVEDVYQNFYYLIFETKNDSIKGYLERFKKKITTNELENIQENN 158
++ W++ E+ + +ND K + T+ ++ I+++N
Sbjct: 245 QNLTRQIELSWDKSPEEDVIAYRIYASNNRNDKYK----FIAQTTNTSYVDKIEKDN 297
>ref|NP_223085.1| HOLLIDAY JUNCTION DNA HELICASE RUVB [Helicobacter pylori J99]
Length = 336
Score = 26.2 bits (56), Expect = 3.5
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 400 NIASLIILEKQNCGFSRNSWGDRHLTIFRNQDKSPYLFNFHAYEAKRKNDMVSGHTIIFG 459
N+ +L Q N W D F Q+K AK++ + + H + FG
Sbjct: 7 NLETLDFETSQEVSLRPNLWED-----FIGQEKIKSNLQISICAAKKRQESLD-HMLFFG 60
Query: 460 GTGAGKTTL 468
G GKT++
Sbjct: 61 PPGLGKTSI 69
>ref|NP_222785.1| UREASE ACCESSORY PROTEIN [Helicobacter pylori J99]
Length = 199
Score = 26.2 bits (56), Expect = 3.5
Identities = 12/32 (37%), Positives = 19/32 (58%)
Query: 457 IFGGTGAGKTTLIEFLITNCFKYEDLSILALD 488
+ G G+GKT LIE L + K D++++ D
Sbjct: 6 VCGPVGSGKTALIEALTRHMSKDYDMAVITND 37
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 26.2 bits (56), Expect = 3.5
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 454 HTIIFGGTGAGKTTLIEFLITNCFKY---EDLSILALDRNNGM 493
HT+I +G+GK+ + LI N Y +++ + LD G+
Sbjct: 345 HTLICDHSGSGKSNFLHVLIQNLAFYYDPDEVQLFLLDYKEGV 387
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 26.2 bits (56), Expect = 3.5
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 ERFKKKITTNELEN---IQENNRQDEVKYQENYFIGFDNFNLLDKSKILYSIINNVKNML 196
E+ + + NEL+N + EN + D EN + D +L +K++ L + + N +
Sbjct: 136 EKTESQKQVNELKNSKQVLENEKADLTN--ENTKLKTDKTDLTEKNQRLTTEKTELNNKI 193
Query: 197 SGLFVEK 203
+GL EK
Sbjct: 194 TGLATEK 200
Score = 25.4 bits (54), Expect = 6.0
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 129 ETKNDSIKG--YLERFKKKITTNELENIQENNR---QDEVKYQENYFIGFDNFNLLDKSK 183
E D++K + E+ K T EL ++EN + E +EN + D NL +
Sbjct: 11 ENPKDALKSTNFHEKHTKPTETTEL--VEENKALTTEKERLERENKNLTADKENLTKEKT 68
Query: 184 ILYSIINNVKNMLSGLFVEKID 205
L +N +KN L EK D
Sbjct: 69 ELQKQVNELKNSKQVLENEKAD 90
>ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 742
Score = 25.8 bits (55), Expect = 4.6
Identities = 22/71 (30%), Positives = 36/71 (49%), Gaps = 4/71 (5%)
Query: 260 FISIKTYDIDKIVSTALSSVLHLSLEFDVILNI-DNIPKAKAEKRIETK--RKRANKSIR 316
F ++ D ++IVS L + L+LE VIL + K A+K +T + K I
Sbjct: 636 FNALSLEDFERIVSVELDKLKALALEQGVILKFHKEVVKCIAQKSYQTTLGAREIKKIIH 695
Query: 317 VEI-DELNDMI 326
EI +L+D++
Sbjct: 696 NEIKTQLSDIL 706
>ref|NP_224181.1| putative [Helicobacter pylori J99]
Length = 367
Score = 25.4 bits (54), Expect = 6.0
Identities = 13/47 (27%), Positives = 26/47 (54%)
Query: 635 YLFYKVMNRAKLENKPFYIFIDEAKSVIENPIMLAKIKDTLAQARKL 681
++ + +M ++N+ Y+FIDE +S + + M +K A+KL
Sbjct: 256 FIKFFIMVSILIDNRVKYLFIDEIESGLHHTKMQEFLKALFKLAQKL 302
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 25.4 bits (54), Expect = 6.0
Identities = 10/30 (33%), Positives = 18/30 (59%)
Query: 599 DLYKHSTDCLDFAKKLSVIDMDALSSSKKD 628
++Y+H + LDF L +++ D LS K+
Sbjct: 151 NIYEHQEEDLDFKGLLDILEKDFLSYQHKE 180
>ref|NP_223810.1| glucose-6-phosphate isomerase [Helicobacter pylori J99]
Length = 545
Score = 25.4 bits (54), Expect = 6.0
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 719 FEKLESYGILLSPIEKSFLNKTPLNARQVLVKNLLTQSSVFLEINLEKLNSTSKK----- 773
F +LES + S K+ LN T L L K+ + + EK+N+T K+
Sbjct: 38 FVQLESLSLDYS---KNRLNDTTLKLLFELAKDCSLKEKIEAMFKGEKINTTEKRAVLHT 94
Query: 774 FLRAYNSSASSVFELETLK 792
LR+ N + + +E LK
Sbjct: 95 ALRSLNDAEILLDNMEVLK 113
>ref|NP_223117.1| putative [Helicobacter pylori J99]
Length = 391
Score = 25.4 bits (54), Expect = 6.0
Identities = 32/161 (19%), Positives = 58/161 (35%), Gaps = 32/161 (19%)
Query: 454 HTIIFGGTGAGKTTLIEFLITNC-----------FKYEDLSILALDRNNGMRVMTEFLDG 502
H +G G GKT+L + + + FK EDL + + N + F+D
Sbjct: 39 HAFFYGPPGVGKTSLAQIIARSLKRPILSFNATDFKLEDLRLKLKNYQNTLLKPVVFIDE 98
Query: 503 QY--NDSNDFYINPF-----------SLKDTSANCTFLVSWLAFMLNIDEDTKDEKEK-- 547
+ N + ++ P S +D + + + + +F + K + ++
Sbjct: 99 THRLNKTQQEFLLPIMEKNRALILGASTQDPNYSLSHAIRSRSFTFELTPLKKSDLDRLC 158
Query: 548 -KTLSALSKTIR-----VCYNNITKQGGAIFKLRDFKDTLE 582
K L+ L K I NN A+ L D +E
Sbjct: 159 DKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIE 199
>ref|NP_222993.1| putative [Helicobacter pylori J99]
Length = 172
Score = 25.4 bits (54), Expect = 6.0
Identities = 15/53 (28%), Positives = 25/53 (46%), Gaps = 6/53 (11%)
Query: 111 LWEQGVEDVYQNFYYLIFETKNDSIKGYLERFKKKITTNELENIQENNRQDEV 163
L+++ + NFY K + LERFKK+ + ELE + + D +
Sbjct: 76 LFQKDPQSYMDNFY------KEVGLDAQLERFKKEGSLEELEFLLDYKYSDSI 122
>ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter pylori J99]
Length = 389
Score = 25.0 bits (53), Expect = 7.8
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 647 ENKPFYIFIDEAKSVIENPIMLAKIKDTLAQARKLNGVL 685
++K ++ ++ KSV++ ++L + + Q KL G+L
Sbjct: 311 QDKDAFLVLEILKSVVKKVLILELHNERIIQLEKLKGIL 349
>ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99]
Length = 688
Score = 25.0 bits (53), Expect = 7.8
Identities = 16/53 (30%), Positives = 25/53 (46%), Gaps = 6/53 (11%)
Query: 65 NERILAL------NEIVDGVHFKIVVKRRKIFMHHEYTQEEISNPFALEVINL 111
NER+L L +EI+ G+ + +R +F E + F+LE I L
Sbjct: 242 NERLLDLLKNQYFDEIIKGIESSALSERENVFKEVAKKISEAHSEFSLEEIEL 294
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 25.0 bits (53), Expect = 7.8
Identities = 18/70 (25%), Positives = 35/70 (49%), Gaps = 1/70 (1%)
Query: 127 IFET-KNDSIKGYLERFKKKITTNELENIQENNRQDEVKYQENYFIGFDNFNLLDKSKIL 185
+FE K+D+IK L+ FK T ++ + + +D Y +++ N + + +L
Sbjct: 706 LFEALKSDNIKKGLKEFKIADVTKDMFDPKSKEFKDIDIYDFTHYLLMVNREPNENNPVL 765
Query: 186 YSIINNVKNM 195
+I VK+M
Sbjct: 766 KRLIQAVKDM 775
>ref|NP_223748.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 393
Score = 25.0 bits (53), Expect = 7.8
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 708 AAQVILYPTNNFEKLESYGILLSPIEKSFLN--KTPLNARQVLVKNLLTQSSVFLEINLE 765
AA +P E+ ++ L + ++ FL+ + P NAR+ L K ++ I L+
Sbjct: 307 AAYHYYFPLWKAEEQIAHDALKTFLKHYFLHIHEIPQNARRRLFKYCIS-------IPLK 359
Query: 766 KLNSTSKKFLRAYNSSASSVFELETLKKDNPKDY 799
S + KFL+ + + +L+ LKK+ +++
Sbjct: 360 SFISKTLKFLKLHALVKKILIQLKLLKKNQSQNF 393
>ref|NP_223579.1| stress protein [Helicobacter pylori J99]
Length = 310
Score = 25.0 bits (53), Expect = 7.8
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 174 DNFNLLDKSKILYSIINNVKNMLSGLFVEKIDANSLLNFYAE-YINGVPSEYTFARG 229
D + L+D SK+L S N + +L L E + L+F + YI P FA G
Sbjct: 86 DEYKLIDPSKVLSSKENQIHRLLLELLEE-----AKLHFEPKLYIINAPYMNAFASG 137
>ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 676
Score = 25.0 bits (53), Expect = 7.8
Identities = 13/39 (33%), Positives = 20/39 (50%), Gaps = 4/39 (10%)
Query: 451 VSGHTIIFGGTGAGKTTLIE----FLITNCFKYEDLSIL 485
+ GH +I G GKT+ I L+ N K E++ +L
Sbjct: 18 LQGHNLIIASAGTGKTSTIVGRILHLLNNGIKPEEILLL 56
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 25.0 bits (53), Expect = 7.8
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 131 KNDSIKGYLERFKKKITTNELENIQENNRQDEVK---YQENYFIGFD-NFNLLDKSKILY 186
K++ + Y + + + E +NI E NR +E K + ++ F G + NF+ + +I+
Sbjct: 765 KDEEVHAYFQNYIHQKREEEFQNIIEENRLNEEKAYSFMQHAFSGGEINFSGTEFPEIIE 824
Query: 187 SIINNVKNMLSGLFVEKIDANSLLNFYAEY 216
++ V++ A SL F+ +
Sbjct: 825 EKVSRFDKNSRYQEVKERVAASLSRFFHRF 854
>ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Helicobacter pylori J99]
Length = 474
Score = 25.0 bits (53), Expect = 7.8
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 294 NIPKAKAEKRIETKRKRANKSIRVEIDELNDMIKTDRVLMQE-ISLNILVHAKTKTDLDS 352
++PKA + E K + ++ E +++ +R M+E NI + + DL+
Sbjct: 85 DLPKAYQISQFEVPIVSDGK-LEIDTKEGAKIVRIERAHMEEDAGKNIHEGSYSLVDLNR 143
Query: 353 ACIEITNLLKQKGIVSTQESIGML 376
AC + ++ + + +++E+I L
Sbjct: 144 ACTPLLEIVSKPDMKNSEEAIAYL 167
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 25.0 bits (53), Expect = 7.8
Identities = 22/81 (27%), Positives = 39/81 (47%), Gaps = 8/81 (9%)
Query: 277 SSVLHLSLEFDVILNIDNIPKAKAEKRIETKRKRANKSIRVEIDELNDMIKTDRVLM--- 333
S+ L + LE+ + ++ + + +KR E KR+R ++ + LN +RV+M
Sbjct: 304 SAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRE----LIKQENLNTTAYINRVMMASN 359
Query: 334 -QEISLNILVHAKTKTDLDSA 353
Q I+ + K K LD A
Sbjct: 360 EQIINKEKIREEKQKIILDQA 380
>ref|NP_222756.1| DNA transformation competancy [Helicobacter pylori J99]
Length = 247
Score = 25.0 bits (53), Expect = 7.8
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 372 SIGMLPMFFSFFPNRNRLNFRKRLLSSQNIASLII---------LEKQNCGFSRNSWGDR 422
S+ L M F RNRL RLL + +L++ L+K F D+
Sbjct: 33 SVNDLDMQSVFRLERNRLKIAYRLLGLMSFIALVLAIVLISILPLQKTEHHFVDFLNQDK 92
Query: 423 HLTIFRNQDKS 433
H I + DKS
Sbjct: 93 HYAIIQRADKS 103
>ref|NP_222738.1| putative [Helicobacter pylori J99]
Length = 469
Score = 25.0 bits (53), Expect = 7.8
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 138 YLERFKKKITTNELENIQENNRQDEVKYQENYFIGFDNFNLLDKSKILYSIINNVKNMLS 197
Y E +K I E+++ +++N E E I + ++ LDK + ++N + LS
Sbjct: 157 YYEEVQKAI--KEIDSSKKHNINMERSRAEVSEILNNTYSNLDKYEAYQGLLNPAVSYLS 214
Query: 198 GLF 200
GLF
Sbjct: 215 GLF 217
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.137 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 893,603
Number of Sequences: 1491
Number of extensions: 45131
Number of successful extensions: 249
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 57
length of query: 807
length of database: 494,079
effective HSP length: 85
effective length of query: 722
effective length of database: 367,344
effective search space: 265222368
effective search space used: 265222368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)