BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645070|ref|NP_207240.1| hypothetical protein
[Helicobacter pylori 26695]
(88 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222736.1| putative [Helicobacter pylori J99] 50 6e-09
ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 25 0.21
ref|NP_222852.1| putative [Helicobacter pylori J99] 25 0.28
ref|NP_223125.1| amino acid permease [Helicobacter pylori J99] 24 0.48
ref|NP_224054.1| putative [Helicobacter pylori J99] 24 0.62
ref|NP_223899.1| NADH oxidoreductase I [Helicobacter pylori... 22 2.4
ref|NP_224165.1| NA(+)/H(+) ANTIPORTER 1 [Helicobacter pylo... 22 3.1
ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter p... 21 4.1
ref|NP_222945.1| GLUTAMYL TRNA REDUCTASE [Helicobacter pylo... 20 6.9
ref|NP_223133.1| TYPE I RESTRICTION ENZYME (SPECIFICITY SUB... 20 9.0
>ref|NP_222736.1| putative [Helicobacter pylori J99]
Length = 87
Score = 50.4 bits (119), Expect = 6e-09
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 11/83 (13%)
Query: 12 NIREISKRETFLGLNLDSWIVS----FLMSAW--LLSFQPLYAMGLMASCVFIFYILEFF 65
N+REIS +E FL LN S+++S F++ W LLS LY +G +A +F +LEFF
Sbjct: 10 NLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLY-LGFLA----LFSVLEFF 64
Query: 66 DEDITAILHALFTLRTGARNYYA 88
DEDI I+ A ++T + Y A
Sbjct: 65 DEDIADIIIAKSKIKTKTKCYRA 87
>ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 358
Score = 25.4 bits (54), Expect = 0.21
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 22 FLGLNLDSWIVSFLMSAWLLSFQPLY------AMGLMASCVFIFYILEFFD 66
FLG + S + L A LL+ Q A+ L++S +F+F++L F D
Sbjct: 154 FLGFFIFSLFLGELNHAALLNLQGQLLWFKSKALWLISSLLFLFFVLAFVD 204
>ref|NP_222852.1| putative [Helicobacter pylori J99]
Length = 482
Score = 25.0 bits (53), Expect = 0.28
Identities = 12/27 (44%), Positives = 16/27 (58%)
Query: 56 VFIFYILEFFDEDITAILHALFTLRTG 82
V +FY+ +F ITA + ALF L G
Sbjct: 376 VALFYLSHYFFASITAHVSALFALFVG 402
>ref|NP_223125.1| amino acid permease [Helicobacter pylori J99]
Length = 475
Score = 24.3 bits (51), Expect = 0.48
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 12/57 (21%)
Query: 23 LGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFIFYILEFFDEDITAILHALFTL 79
+G+ + W V+ + W++S C+ + ++L FF I A F+L
Sbjct: 117 IGMLMQRWFVNIPIHYWVIS------------CIALVFLLNFFSVKIFAEGEFFFSL 161
Score = 23.9 bits (50), Expect = 0.62
Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 6 VCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSF--QPLYAMG-LMASCVFIFYIL 62
V +E I I + +R F+ + + W++S + +LL+F ++A G S + + ++
Sbjct: 110 VALEYIAIGMLMQR-WFVNIPIHYWVISCIALVFLLNFFSVKIFAEGEFFFSLIKVLAVI 168
Query: 63 EFFDEDITAILHALF 77
F + I++ ++
Sbjct: 169 AFISIGVIGIIYQIY 183
>ref|NP_224054.1| putative [Helicobacter pylori J99]
Length = 274
Score = 23.9 bits (50), Expect = 0.62
Identities = 11/36 (30%), Positives = 18/36 (49%)
Query: 36 MSAWLLSFQPLYAMGLMASCVFIFYILEFFDEDITA 71
M W LS + LY MG + F+I ++ + T+
Sbjct: 123 MFDWRLSLKELYTMGSLVGADTNFFISQYKSANATS 158
>ref|NP_223899.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 133
Score = 21.9 bits (45), Expect = 2.4
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 36 MSAWLLSFQPLYAMGLMASCVFIFYI 61
M W + F+ L GL+ F+F++
Sbjct: 87 MFPWAIDFKKLGLFGLVEMLGFVFFL 112
>ref|NP_224165.1| NA(+)/H(+) ANTIPORTER 1 [Helicobacter pylori J99]
Length = 438
Score = 21.6 bits (44), Expect = 3.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 22 FLGLNLDSWIVSFLMSAWLL 41
F+G +L +WI LM+ + L
Sbjct: 63 FIGFSLHNWIDDVLMALFFL 82
>ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter pylori J99]
Length = 383
Score = 21.2 bits (43), Expect = 4.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 23 LGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFIFYIL 62
LG++L I ++L+ + LSF +++ L + IF I+
Sbjct: 79 LGVSLLKRIFAYLLILYTLSFILTFSLNLEPIFMVIFPII 118
>ref|NP_222945.1| GLUTAMYL TRNA REDUCTASE [Helicobacter pylori J99]
Length = 449
Score = 20.4 bits (41), Expect = 6.9
Identities = 8/23 (34%), Positives = 12/23 (51%)
Query: 63 EFFDEDITAILHALFTLRTGARN 85
+F +D+T +LH F RN
Sbjct: 144 KFCSKDLTRLLHFAFKCAAKVRN 166
>ref|NP_223133.1| TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT) [Helicobacter
pylori J99]
Length = 409
Score = 20.0 bits (40), Expect = 9.0
Identities = 5/16 (31%), Positives = 14/16 (87%)
Query: 57 FIFYILEFFDEDITAI 72
F++Y+L+++ ++I+ I
Sbjct: 111 FLYYLLKYYKDNISNI 126
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.334 0.143 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,481
Number of Sequences: 1491
Number of extensions: 2761
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 11
length of query: 88
length of database: 494,079
effective HSP length: 64
effective length of query: 24
effective length of database: 398,655
effective search space: 9567720
effective search space used: 9567720
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 40 (20.0 bits)