BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645071|ref|NP_207241.1| hypothetical protein
[Helicobacter pylori 26695]
(100 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222735.1| putative [Helicobacter pylori J99] 31 0.006
ref|NP_224074.1| putative [Helicobacter pylori J99] 24 0.94
ref|NP_223168.1| putative transporter [Helicobacter pylori ... 23 1.6
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 23 2.1
ref|NP_224106.1| TRANSALDOLASE [Helicobacter pylori J99] 22 4.7
ref|NP_224104.1| putative [Helicobacter pylori J99] 21 6.1
ref|NP_223847.1| abc transporter, ATP-binding protein [Heli... 21 7.9
>ref|NP_222735.1| putative [Helicobacter pylori J99]
Length = 93
Score = 31.2 bits (69), Expect = 0.006
Identities = 15/54 (27%), Positives = 27/54 (49%)
Query: 45 ISNDFIKAIGGLIIVGTCIYAYKNWDRLGEIGWKCVGIIIITAAISNAKTLSQW 98
+ + K I +I +G IY ++N DR EI + +G++ A +L+ W
Sbjct: 35 LKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFFKAPSLANW 88
>ref|NP_224074.1| putative [Helicobacter pylori J99]
Length = 225
Score = 23.9 bits (50), Expect = 0.94
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 10 MFKQIRRMMSLAILMPSFLLAAPDYKQKFTQILDF 44
MF Q + L + +P + AP Y +FT IL F
Sbjct: 100 MFMQEAQKACLGVALPPYGAGAPTYAVRFT-ILSF 133
>ref|NP_223168.1| putative transporter [Helicobacter pylori J99]
Length = 442
Score = 23.1 bits (48), Expect = 1.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 42 LDFISNDFIKAIGGLIIV 59
LDFI++ F+ +GGL V
Sbjct: 376 LDFITSSFLMPLGGLFSV 393
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 22.7 bits (47), Expect = 2.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 42 LDFISNDFIKAIGGLIIVGT 61
+D D +K +GGL I+GT
Sbjct: 500 VDIKLTDEVKELGGLYIIGT 519
>ref|NP_224106.1| TRANSALDOLASE [Helicobacter pylori J99]
Length = 316
Score = 21.6 bits (44), Expect = 4.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 43 DFISNDFIKAIGGLIIVG 60
DF+ NDF+K I I G
Sbjct: 14 DFLENDFLKLINKGAICG 31
>ref|NP_224104.1| putative [Helicobacter pylori J99]
Length = 203
Score = 21.2 bits (43), Expect = 6.1
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 6 KGIRMFKQIRRMMSLAILMPSFLLAAPDYKQKFTQILDFISNDFIK 51
+G FKQ +L + L + K K +L I+ DF K
Sbjct: 16 EGFLAFKQAHYAEALRLFSEVLFLDKDNQKAKVGALLSDIAKDFPK 61
>ref|NP_223847.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 578
Score = 20.8 bits (42), Expect = 7.9
Identities = 9/22 (40%), Positives = 13/22 (58%)
Query: 10 MFKQIRRMMSLAILMPSFLLAA 31
+F +MSL +LMP LA+
Sbjct: 41 VFSSFVEVMSLTLLMPFITLAS 62
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.330 0.143 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,086
Number of Sequences: 1491
Number of extensions: 3219
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 7
length of query: 100
length of database: 494,079
effective HSP length: 64
effective length of query: 36
effective length of database: 398,655
effective search space: 14351580
effective search space used: 14351580
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 42 (20.8 bits)