BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645072|ref|NP_207242.1| hypothetical protein
[Helicobacter pylori 26695]
(507 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223653.1| putative [Helicobacter pylori J99] 86 2e-18
ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter py... 30 0.14
ref|NP_224138.1| glutamine fructose-6-phosphate aminotransf... 29 0.32
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 28 0.55
ref|NP_223507.1| putative abc transporter, ATP-binding prot... 28 0.55
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 28 0.71
ref|NP_223405.1| putative [Helicobacter pylori J99] 28 0.71
ref|NP_222879.1| MOLYBDOPTERIN BIOSYNTHESIS PROTEIN [Helico... 28 0.71
ref|NP_223645.1| putative [Helicobacter pylori J99] 27 1.2
ref|NP_224149.1| putative [Helicobacter pylori J99] 27 1.6
ref|NP_223787.1| putative [Helicobacter pylori J99] 27 1.6
ref|NP_224013.1| putative ENDONUCLEASE [Helicobacter pylori... 26 2.1
ref|NP_222990.1| putative [Helicobacter pylori J99] 26 2.7
ref|NP_224134.1| putative [Helicobacter pylori J99] 25 3.5
ref|NP_223761.1| putative [Helicobacter pylori J99] 25 3.5
ref|NP_223158.1| putative [Helicobacter pylori J99] 25 3.5
ref|NP_222912.1| putative [Helicobacter pylori J99] 25 3.5
ref|NP_223655.1| putative [Helicobacter pylori J99] 25 4.6
ref|NP_223184.1| GTP-binding protein [Helicobacter pylori J99] 25 4.6
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 25 4.6
ref|NP_223180.1| putative [Helicobacter pylori J99] 25 6.1
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 25 6.1
ref|NP_222774.1| putative [Helicobacter pylori J99] 25 6.1
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 24 7.9
ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori... 24 7.9
ref|NP_223703.1| putative [Helicobacter pylori J99] 24 7.9
ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 24 7.9
ref|NP_223323.1| putative [Helicobacter pylori J99] 24 7.9
ref|NP_222936.1| 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSF... 24 7.9
ref|NP_222786.1| UREASE ACCESSORY PROTEIN [Helicobacter pyl... 24 7.9
>ref|NP_223653.1| putative [Helicobacter pylori J99]
Length = 177
Score = 86.3 bits (212), Expect = 2e-18
Identities = 49/143 (34%), Positives = 81/143 (56%), Gaps = 1/143 (0%)
Query: 340 RDKNNLIPRPVFKPSLALRLKEP-KIPNLSLNVILAMDNDEQGRKFNAILEKIFYAHTKE 398
R+KN LI + + R +P P S NVILA DND G+ + E I YA T++
Sbjct: 23 REKNALIYNKQVERTREYRKPKPVNKPQDSFNVILAFDNDINGKGYKEKCEGILYALTQQ 82
Query: 399 IPNIYTPISKDANDDLKIAKALGLKQISNRILQDFLFDAKEKMQNPTTTPSQKSILANQL 458
P IYTP SKD NDDLK+A + K I+ + +FL + EK+++ T+ +K + ++L
Sbjct: 83 FPTIYTPFSKDCNDDLKLAHIIENKVINIDTMAEFLESSLEKLKDNYTSTQEKENIMDKL 142
Query: 459 QKLQDLMPKPKLLQGVFHGYQQD 481
+++ + P + L+G+ +++
Sbjct: 143 EQIDSIKPFNERLKGILENAKEN 165
>ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 465
Score = 30.0 bits (66), Expect = 0.14
Identities = 22/67 (32%), Positives = 34/67 (49%), Gaps = 9/67 (13%)
Query: 400 PNIYTPISKDANDDLKIAKALGLKQISNRILQDFLFDAKEKM-QNPTTTPSQKSILANQL 458
PN I + DDL ++KAL +L+ L EK+ QNP + ILAN L
Sbjct: 338 PNFKKEILECMQDDLNVSKALS-------VLESMLSSTNEKLDQNPKNKALKGEILAN-L 389
Query: 459 QKLQDLM 465
+ +++L+
Sbjct: 390 KFIEELL 396
>ref|NP_224138.1| glutamine fructose-6-phosphate aminotransferase [Helicobacter
pylori J99]
Length = 597
Score = 28.9 bits (63), Expect = 0.32
Identities = 19/40 (47%), Positives = 24/40 (59%), Gaps = 6/40 (15%)
Query: 393 YAHTKEIPN-IYTPISK-----DANDDLKIAKALGLKQIS 426
YAH K PN ++ IS+ D + LK+AKA GLK IS
Sbjct: 324 YAHFKSNPNELFIAISQSGETADTLEALKLAKAQGLKTIS 363
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 28.1 bits (61), Expect = 0.55
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 122 VKQFEKLRYYDIESSDLFHTLLDSRSLDKTLLKPY----NHLL 160
+K+FE RY S + + ++ LD TL+KPY NH+L
Sbjct: 235 LKRFELERYAGSMSPSSYASEVEVLKLDNTLIKPYRIFMNHVL 277
Score = 26.2 bits (56), Expect = 2.1
Identities = 11/31 (35%), Positives = 15/31 (47%)
Query: 301 DYENYTNFQKRYEKWRAKELAKHDNDPKKVP 331
DYE Y FQ Y+ + + DP K+P
Sbjct: 278 DYEGYRFFQSSYDTDEKGTILSVNKDPGKIP 308
>ref|NP_223507.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 533
Score = 28.1 bits (61), Expect = 0.55
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 108 TIITKEQEAERQKVVKQFEKLRYY 131
T+I K+QEAER K +K+ E+L +
Sbjct: 247 TLIAKQQEAERNKKLKEKEELEKF 270
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 27.7 bits (60), Expect = 0.71
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 252 TAIISTIGNFTEERMQKFVDKFLNTINTYKCKEYNEYHKEIDRYNKQL 299
TA+I + E ++KF ++FL N K E + ++E + + K+L
Sbjct: 446 TAMIGRLREAFEISVEKFCERFLEETNLLKSYEKEDNYEEREGFVKEL 493
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 27.7 bits (60), Expect = 0.71
Identities = 20/88 (22%), Positives = 40/88 (44%), Gaps = 12/88 (13%)
Query: 356 ALRLKEPKIPNLSLNVILAMDNDEQGRKFNAILEKIFYAHTKEIPNIYTPISKDANDDLK 415
A+R KE + + ++ + E+ R + + EK+ + K + D L+
Sbjct: 54 AIRSKELQKVEIERQMVALKKSLEKNRNESLVQEKVLTNYRKSL------------DHLQ 101
Query: 416 IAKALGLKQISNRILQDFLFDAKEKMQN 443
++ K++ + +L+DFLF K QN
Sbjct: 102 KQRSFLQKRVFDTLLEDFLFSQALKGQN 129
>ref|NP_222879.1| MOLYBDOPTERIN BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 390
Score = 27.7 bits (60), Expect = 0.71
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 15/133 (11%)
Query: 81 FNDLIKNRDDLEISDKPNHKYNNSKPYTIITKEQEAERQKVVKQFEKLRYYDIESSDLFH 140
F D +K R+ L +K N K KP T+ Q L + L
Sbjct: 251 FKDALKERNALFYYEKVNLK--PGKPVTLAQLNQSIIIGLPGNPLSCLLVLRV----LIL 304
Query: 141 TLLDSRSLDKTL-LKPYNHLLKEDEHANLCVPCYLINDNGNLILGGYNKRLSKPFTMQGA 199
LL+ SL+K LKP+ A + P L N +LILG Y+ P+ +
Sbjct: 305 PLLERLSLNKDFKLKPFK--------AQINAPLKLNNKRTHLILGNYSNHQFIPYNNRYE 356
Query: 200 TNPTKHLMQAGSI 212
+ + L Q SI
Sbjct: 357 SGAIQALAQVDSI 369
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 26.9 bits (58), Expect = 1.2
Identities = 44/197 (22%), Positives = 79/197 (39%), Gaps = 19/197 (9%)
Query: 283 KEYNEYHKEIDRYNKQLEDYEN--YTNFQKRYEKWRAKELAKHDNDPKKVPND---PIFS 337
K+ +YHK + + + D N Y QK + +EL K DN ++ + IF
Sbjct: 872 KDVYQYHKTTLKTDVLIIDSSNERYQEVQKLIKNLERRELVKWDNLYFQLEQNNEMGIFL 931
Query: 338 PIRDKNNLIPRPVFKPSLALRLKEPKIPNLSLNVILA-MDNDEQGRKFNAILEKIF--YA 394
N+ + K ++ + + LN + + ++ + + K N + ++ +
Sbjct: 932 KPTKINSKVQDSRLKAYFKIKDALNDLTSAELNPLSSDLELENKRAKLNLVYDEFVKKFG 991
Query: 395 HTKEIPNIYTPISKDANDDLKIAKALGLKQISNRILQDFLFDAKEKMQNPTTTPSQKSIL 454
+ E N KD DL AK LGL+ + + + KMQN P Q
Sbjct: 992 YLNENKN-----RKDIRQDLYGAKVLGLE----KDFEKEITPRSAKMQN--IEPRQAQAK 1040
Query: 455 ANQLQKLQDLMPKPKLL 471
Q+ + L PK +L+
Sbjct: 1041 KAQIFFERTLNPKKELI 1057
>ref|NP_224149.1| putative [Helicobacter pylori J99]
Length = 293
Score = 26.6 bits (57), Expect = 1.6
Identities = 11/28 (39%), Positives = 16/28 (56%)
Query: 283 KEYNEYHKEIDRYNKQLEDYENYTNFQK 310
KEY +YHK + K L+D + Y +K
Sbjct: 117 KEYLDYHKITQDFKKNLQDSKLYEQHKK 144
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 26.6 bits (57), Expect = 1.6
Identities = 23/95 (24%), Positives = 38/95 (39%), Gaps = 18/95 (18%)
Query: 250 NQTAIISTIGNFTEERMQKFVDK----------------FLNTINTYKCKEYNEYHKEI- 292
+Q I T+G T E ++K K L + K KE ++
Sbjct: 104 SQVKGIFTLGKKTNENLEKIESKKESINKENEKKIKNEASLQVLTQKKEKEEKDFTDSCW 163
Query: 293 -DRYNKQLEDYENYTNFQKRYEKWRAKELAKHDND 326
+ Y K E+++ KR EK++ K L + +ND
Sbjct: 164 KNLYKKNEEEFKEILEGFKRKEKFKGKILKEFEND 198
>ref|NP_224013.1| putative ENDONUCLEASE [Helicobacter pylori J99]
Length = 287
Score = 26.2 bits (56), Expect = 2.1
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 270 VDKFLNTINTYKCKEYNEYHKEIDRYNKQLEDYENY------TNFQKRYEKWRAKELAKH 323
+D F IN+Y K+ NE +++ N + TN + K +
Sbjct: 23 LDNFTKAINSYTAKKLNEIKDQVNSANPTKNHNPTHNANGMLTNIDCKVLKNNFYSVCYS 82
Query: 324 DNDPKKVPN-DPIFSPIRDKNNLIPRPVFKPSLAL 357
+ +F + DKNN+ R FKP L
Sbjct: 83 SELKNPIYGVSVLFGDLVDKNNIEKRYEFKPDTRL 117
>ref|NP_222990.1| putative [Helicobacter pylori J99]
Length = 523
Score = 25.8 bits (55), Expect = 2.7
Identities = 20/73 (27%), Positives = 33/73 (44%), Gaps = 4/73 (5%)
Query: 100 KYNNSKPYTIITKEQEAERQKVVKQFEKLRYYDIESSDLFHTLLDSRSLDKTL----LKP 155
K+ N K Y I E+E+ RQ++ + K ++ S L HTL S K + P
Sbjct: 47 KFENYKIYNQIYTEKESVRQELRRLKNKKSKDLLKISTLEHTLKALESQQKMFESYGVNP 106
Query: 156 YNHLLKEDEHANL 168
+ L++ N+
Sbjct: 107 FKDLIERPNIPNI 119
>ref|NP_224134.1| putative [Helicobacter pylori J99]
Length = 479
Score = 25.4 bits (54), Expect = 3.5
Identities = 22/101 (21%), Positives = 39/101 (37%), Gaps = 12/101 (11%)
Query: 361 EPKIPNLSLNVILAMDNDEQGRKFNAIL--EKIFYAHTKEIPNIYTPISKDANDDLKIAK 418
+P LSL L+ + R + +++ H+ IP++ P+ K N +
Sbjct: 76 QPLDEKLSLETTLSPNRPTIPRNTQIVFSSKELKEPHSNPIPSLNAPMQKPQNKPSSSQQ 135
Query: 419 A----------LGLKQISNRILQDFLFDAKEKMQNPTTTPS 449
+ LG K N +LQ + +K N TP+
Sbjct: 136 SPQNFSYPESKLGSKNSKNSLLQPLVTPSKVSPTNEVKTPT 176
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 25.4 bits (54), Expect = 3.5
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 122 VKQFEKLRYYDIESSDLFHTLLDSRSLDKTLLKPYNHLLKEDEHANL 168
+K +EK++ ++++ FH L+ + L Y + + ANL
Sbjct: 603 IKSYEKVKKMFVDNAGSFHNLIHDMNFPNVSLNAYLSDIMDRSFANL 649
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 25.4 bits (54), Expect = 3.5
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 122 VKQFEKLRYYDIESSDLFHTLLDSRSLDKTLLKPYNHLLKEDEHANL 168
+K +EK++ ++++ FH L+ + L Y + + ANL
Sbjct: 523 IKSYEKVKKMFVDNAGSFHNLIHDMNFPNVSLNAYLSDIMDRSFANL 569
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 25.4 bits (54), Expect = 3.5
Identities = 39/205 (19%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 130 YYDIESSDLFHTLLDSRSLDKTLLKPYNHLLKEDEHANLCVPCYLINDNGNLILG-GYNK 188
Y ++ ++ LF L+ S + L+K + ++E N P N I+G G K
Sbjct: 90 YANVTNNLLFKKLIKHLSGNNQLVKNFYQCIREIIKYN--APNKEYKPNQFFIIGKGKQK 147
Query: 189 RLSKPFTMQGATNPTKHLMQAGSIKGFEVLSPRNIKNIQNIIVAESVFDGLSVLEMQRFD 248
+L+K ++ HL + + + + P+++++I + E + + +F
Sbjct: 148 QLAKIYS---------HLKELSASE----IKPQDMEDILKKL--EELDKIFKTTDFTKFT 192
Query: 249 PNQTAIISTIGNFTEERMQKFVDKFLNTINTYKCKEYNEYHKEIDRYNKQLEDYENYTNF 308
P + I + +E +K+ IN +++NE+ I+++++ +D+E
Sbjct: 193 PK-----TEIKDIIKEIDEKY------PINENFKRQFNEFESNIEKHDEIKKDFERNKES 241
Query: 309 QKRYEKWRAKELAKHDNDPKKVPND 333
R + K + +P+ ND
Sbjct: 242 LIREIENHCKNECNSEEEPEYKIND 266
>ref|NP_223655.1| putative [Helicobacter pylori J99]
Length = 416
Score = 25.0 bits (53), Expect = 4.6
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 304 NYTNFQKRYEKWRAKELAKHDNDPKKVP--------NDPIFSPIRDKNNLIPR 348
NY N ++ E W A+ L ++ ++ P N+ I + ++D NNLI +
Sbjct: 103 NYENLKQSIENWNAQNLLRNKYLQQQCPWLNVNALTNNKIVN-LKDLNNLITK 154
>ref|NP_223184.1| GTP-binding protein [Helicobacter pylori J99]
Length = 301
Score = 25.0 bits (53), Expect = 4.6
Identities = 12/38 (31%), Positives = 23/38 (59%)
Query: 203 TKHLMQAGSIKGFEVLSPRNIKNIQNIIVAESVFDGLS 240
+KHL + + +++S +++I I+ ES+FD LS
Sbjct: 168 SKHLSPSAWLFEKDLMSDEKMRDIYKEIIRESLFDFLS 205
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 25.0 bits (53), Expect = 4.6
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 267 QKFVDKFLNTINTYKCKEYNEYHKEIDRYNKQLEDYENY 305
Q+ VD + +N + YH++ +L+DY+ Y
Sbjct: 246 QESVDSMIEIVNANFSLVHRYYHQKAQILGHKLKDYDRY 284
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 24.6 bits (52), Expect = 6.1
Identities = 16/69 (23%), Positives = 29/69 (41%), Gaps = 9/69 (13%)
Query: 19 NGYKHKVEKSSKNNPALYNEYDTIKGTLIVSRKPDGSYHYFNTHNDEDKGTIIAFCKNRG 78
NGY +E+ K N L+N + T+ + P+ Y G + + G
Sbjct: 231 NGYWRAMEEDFKQNETLFNRFVRHYLTIKTGKIPNIKKVY---------GAFKDYQQKEG 281
Query: 79 LDFNDLIKN 87
++ DL+K+
Sbjct: 282 IEIEDLLKD 290
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 24.6 bits (52), Expect = 6.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 259 GNFTEE----RMQKFVDKFLNTINTYKCKEYNEYHKEIDRYNKQLEDYEN 304
G+FT+E K + NTIN+ N+ +I+ N LE Y+N
Sbjct: 401 GDFTQEIACVPKNKDLQALRNTINSIIQYFRNQIGADIESLNNALEHYKN 450
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 24.6 bits (52), Expect = 6.1
Identities = 27/127 (21%), Positives = 46/127 (35%), Gaps = 8/127 (6%)
Query: 23 HKVEKSSKNNPALYNEYDTIKGTLIVSRKPDGSYHYFNTHNDEDKGTIIAFCKNRGLDFN 82
HK+ + +K N AL E D + + S + G + C N +
Sbjct: 153 HKITELTKENKALTTENDKLNHQVTALTNERDSLEQERARLQDAHGFLEKRCTNLEKENQ 212
Query: 83 DLIKNRDDLEISDKPNHKYNNSKPYTIITKEQEAERQKVVKQFEKLRYYDIESSDLFHTL 142
L LE + K NN + + E ++ + EK+ IE S+L +
Sbjct: 213 RLTDKLKQLESAQKSLENTNNQ-----LRQALENSNVQLAQAKEKIA---IEKSELEREI 264
Query: 143 LDSRSLD 149
+SL+
Sbjct: 265 ARLKSLE 271
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 24.3 bits (51), Expect = 7.9
Identities = 48/227 (21%), Positives = 83/227 (36%), Gaps = 32/227 (14%)
Query: 244 MQRFDPNQTAIISTIGNFTEERMQKF-VDKFLNTINTYKCKEYNE-----YHKEIDRYNK 297
++ F+ +++ + +E QK ++KFL Y C Y + Y + R
Sbjct: 25 IENFEKEINSLLENVPRQDDEEFQKNEINKFLKNAYGYDCNTYEKVDSVIYVDKEVRVLI 84
Query: 298 QLEDYENYTNFQKRYEKWRAKELAKH-----DNDPKKVPNDPIFSPIRDKNNLIPRPVFK 352
+++ N T F K E +K + + K+ N + I + + +F
Sbjct: 85 EVKALNNKTEFPKNRENPLSKAFCQMVLYFLEEIEKEKNNSLKHTIICNAHEFF---LFD 141
Query: 353 PSLALRLKEPK-IPNLSLNVILAMDNDEQGRKFNAILEKIF---------YAH------T 396
L LKE K I N D KF LE+ Y H
Sbjct: 142 CKDLLSLKEDKRIKKFYKNYAKKEGTDSSKPKFYKDLEQFLQEDFQGELRYTHFNLSDDF 201
Query: 397 KEIPNIYTPISKDANDDLKIAKALGLKQISNRILQDFLFDAKEKMQN 443
KE+P IY +S++ LK + L ++ ++ L+ + QN
Sbjct: 202 KELPLIYQVLSQEVL--LKQKRTLDANTLNKDFYEELLYILGLEEQN 246
>ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 415
Score = 24.3 bits (51), Expect = 7.9
Identities = 25/87 (28%), Positives = 36/87 (40%), Gaps = 9/87 (10%)
Query: 284 EYNEYHKEIDRYNKQLEDYENYTNFQKRYEK-WRAKELAKHDND--PKKVPNDPIFSPIR 340
E + I Y KQL + E FQ + K + K K D K++ N+ I
Sbjct: 28 ELERLREAIAHYKKQLIELEGLQAFQNKVSKEFGIKMAQKMDTSDLKKELENNKI----- 82
Query: 341 DKNNLIPRPVFKPSLALRLKEPKIPNL 367
K N + + V + + LK IPNL
Sbjct: 83 -KLNELSKSVGEAEQEMDLKLSIIPNL 108
>ref|NP_223703.1| putative [Helicobacter pylori J99]
Length = 222
Score = 24.3 bits (51), Expect = 7.9
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 6 NLQLLPLDEILISNGYKHKVEKSSKNNPALYNEYDTIKGTLIVSRK 51
+L+ LPL+ +I + ++K+ PAL + D++K L + ++
Sbjct: 67 SLEHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKR 112
>ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 454
Score = 24.3 bits (51), Expect = 7.9
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 73 FCKNRGLDFNDLIKNRDDLE--ISDKPNHKYNNSKPYTIITKEQEAERQKVVKQFEK 127
+ +N LDFND+ ++R D + ++ KP K +T+ K E + + +F +
Sbjct: 207 YYQNMLLDFNDINQSRKDAKERLAQKPYPKRLKQLLHTLAPKGVEFRKLGDIGEFTR 263
>ref|NP_223323.1| putative [Helicobacter pylori J99]
Length = 335
Score = 24.3 bits (51), Expect = 7.9
Identities = 10/24 (41%), Positives = 13/24 (53%)
Query: 261 FTEERMQKFVDKFLNTINTYKCKE 284
FT +R +KF+ KF N Y E
Sbjct: 35 FTRKRNKKFLQKFAQNQNAYASSE 58
>ref|NP_222936.1| 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE [Helicobacter
pylori J99]
Length = 243
Score = 24.3 bits (51), Expect = 7.9
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 365 PNLSLNVILAMDNDEQGRKFNAILEKIFYAHTKEIPNIYTPISKDANDDLKIAKAL 420
P L VILA+ Q F A K+ + PN+ + N+ L +++L
Sbjct: 97 PFLEKKVILALLEATQNAPFMATCAKVIDEEQAKSPNLVKVVLDSQNNALYFSRSL 152
>ref|NP_222786.1| UREASE ACCESSORY PROTEIN [Helicobacter pylori J99]
Length = 256
Score = 24.3 bits (51), Expect = 7.9
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 355 LALRLKEPKIPNLSLNVILAMDNDEQGRKFNAILEKIFYAHTKEIP---NIYTPISKDAN 411
+ LRL K+ N + + AM+ + G FNA YA T + P Y + N
Sbjct: 120 MELRLANQKLGNRFIKTLQAMNELDMGAFFNA------YAQTTKDPTHATSYGVFAASLN 173
Query: 412 DDLKIA 417
+LK A
Sbjct: 174 MELKKA 179
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.135 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 602,889
Number of Sequences: 1491
Number of extensions: 30957
Number of successful extensions: 139
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 118
Number of HSP's gapped (non-prelim): 38
length of query: 507
length of database: 494,079
effective HSP length: 82
effective length of query: 425
effective length of database: 371,817
effective search space: 158022225
effective search space used: 158022225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)