BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645073|ref|NP_207243.1| hypothetical protein
[Helicobacter pylori 26695]
(61 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 23 1.2
ref|NP_223642.1| putative [Helicobacter pylori J99] 22 2.0
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 22 2.0
ref|NP_223429.1| TYROSYL-TRNA SYNTHETASE [Helicobacter pylo... 22 2.6
ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobact... 22 3.4
ref|NP_223063.1| putative [Helicobacter pylori J99] 21 4.5
ref|NP_223761.1| putative [Helicobacter pylori J99] 21 5.8
ref|NP_223680.1| putative POLYSACCHARIDE BIOSYNTHESIS PROTE... 21 5.8
ref|NP_223331.1| putative [Helicobacter pylori J99] 21 5.8
ref|NP_223258.1| putative [Helicobacter pylori J99] 21 5.8
ref|NP_223990.1| putative [Helicobacter pylori J99] 20 7.6
ref|NP_223842.1| 50S RIBOSOMAL PROTEIN L11 [Helicobacter py... 20 7.6
ref|NP_223700.1| putative [Helicobacter pylori J99] 20 7.6
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 20 7.6
ref|NP_223378.1| ANAEROBIC C4-DICARBOXYLATE MEMBRANE TRANSP... 20 7.6
ref|NP_223269.1| UROPORPHYRINOGEN DECARBOXYLASE [Helicobact... 20 7.6
ref|NP_223972.1| putative TRNA (5-METHYLAMINOMETHYL-2-THIOU... 20 9.9
ref|NP_223848.1| putative [Helicobacter pylori J99] 20 9.9
ref|NP_223388.1| putative [Helicobacter pylori J99] 20 9.9
ref|NP_222754.1| putative [Helicobacter pylori J99] 20 9.9
ref|NP_222728.1| PANTOATE--BETA-ALANINE LIGASE [Helicobacte... 20 9.9
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 23.1 bits (48), Expect = 1.2
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 4 PLKKDLRISQKYVIPKGFDPTNKEYKNFLVKDLPKLVHREVEIVMKLLFEINEVVDR 60
P K +L +SQK V + PT F V+D K V L EI VV R
Sbjct: 398 PNKLELELSQKNVAEQIIRPTGLLDPKFEVRDSDKQ-------VQDLFDEIKSVVAR 447
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 22.3 bits (46), Expect = 2.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 6 KKDLRISQKYVIPKGFDPTNKEYK 29
KKDL SQ IP T+KE K
Sbjct: 141 KKDLSFSQSNPIPLDKKETSKEEK 164
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 22.3 bits (46), Expect = 2.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 13 QKYVIPKGFDPTNKEYKNFLVKDLP 37
QK+V + F+P + YK F + P
Sbjct: 1253 QKFVFEETFNPGSITYKYFTIHSSP 1277
>ref|NP_223429.1| TYROSYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 402
Score = 21.9 bits (45), Expect = 2.6
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 5 LKKDLRISQKYVIPKGFDPT 24
++K ++++++ GFDPT
Sbjct: 29 VRKYYETNERFIVKAGFDPT 48
>ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobacter pylori J99]
Length = 712
Score = 21.6 bits (44), Expect = 3.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 12 SQKYVIPKGFDPTNKEYKNFLVKDL 36
S +VIPKGF +++ F +K++
Sbjct: 687 STTFVIPKGFATKLDKHRLFHLKEI 711
>ref|NP_223063.1| putative [Helicobacter pylori J99]
Length = 207
Score = 21.2 bits (43), Expect = 4.5
Identities = 12/34 (35%), Positives = 17/34 (49%)
Query: 18 PKGFDPTNKEYKNFLVKDLPKLVHREVEIVMKLL 51
P F +K Y N L+K L K + +E + K L
Sbjct: 165 PSLFPQEDKSYHNALIKALNKAYYSLMEGLEKRL 198
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 20.8 bits (42), Expect = 5.8
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 21 FDPTNKEYKNFLVKDLPK---LVHRE 43
FDP +KE+K+ + D +V+RE
Sbjct: 732 FDPKSKEFKDIDIYDFTHYLLMVNRE 757
>ref|NP_223680.1| putative POLYSACCHARIDE BIOSYNTHESIS PROTEIN [Helicobacter pylori
J99]
Length = 389
Score = 20.8 bits (42), Expect = 5.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 13 QKYVIPKGFDPTNK 26
+KY I GFDP K
Sbjct: 176 KKYAISNGFDPMFK 189
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 20.8 bits (42), Expect = 5.8
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 26 KEYKNFLVKDLPKLV----HREVEIVMKLLFEIN 55
++YKN L K+ P++ +E+ ++ K L E++
Sbjct: 1011 EKYKNSLAKEAPRIALSEDFKELSMLGKELAELH 1044
>ref|NP_223258.1| putative [Helicobacter pylori J99]
Length = 591
Score = 20.8 bits (42), Expect = 5.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 9 LRISQKYVIPKGFDPTNKEYKNFLVKDLPKLVHREVE 45
L+ SQ Y + K TNK+ + F + L K ++ +++
Sbjct: 553 LKPSQSYSVLKRSLRTNKQERLFKILSLIKKIYGKLK 589
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 20.4 bits (41), Expect = 7.6
Identities = 7/15 (46%), Positives = 11/15 (72%)
Query: 26 KEYKNFLVKDLPKLV 40
K Y++FL D PK++
Sbjct: 898 KRYEDFLKADYPKIL 912
>ref|NP_223842.1| 50S RIBOSOMAL PROTEIN L11 [Helicobacter pylori J99]
Length = 141
Score = 20.4 bits (41), Expect = 7.6
Identities = 9/24 (37%), Positives = 14/24 (57%)
Query: 30 NFLVKDLPKLVHREVEIVMKLLFE 53
N L + KL H++VE + +L E
Sbjct: 91 NPLKNKIAKLTHKQVEEIAQLKME 114
>ref|NP_223700.1| putative [Helicobacter pylori J99]
Length = 170
Score = 20.4 bits (41), Expect = 7.6
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 11 ISQKYVIPKGFDPTNKEYKNFLVKDL 36
+ + IP F+ +EY ++KDL
Sbjct: 90 VEHHFEIP--FEEKKREYSKLIIKDL 113
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE [Helicobacter
pylori J99]
Length = 469
Score = 20.4 bits (41), Expect = 7.6
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 6 KKDLRISQKYVIPKGFDPTNKEYKNFLVKDLPKLVHREVEIVMKLLFEINEVVDR 60
K L + IPK +K+ + + PKLV + K+ +E+ + D+
Sbjct: 55 KSYLELEAVLTIPKKHYQFSKQSFITIAQFSPKLVRVVIGYAPKMTYEVKILKDK 109
>ref|NP_223378.1| ANAEROBIC C4-DICARBOXYLATE MEMBRANE TRANSPORTER [Helicobacter
pylori J99]
Length = 443
Score = 20.4 bits (41), Expect = 7.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 26 KEYKNFLVKDLPKLVHREVEIVMKLLF 52
K Y +FL+ D P L+ + + LL+
Sbjct: 322 KRYASFLIADYPFLLAVALFLASMLLY 348
>ref|NP_223269.1| UROPORPHYRINOGEN DECARBOXYLASE [Helicobacter pylori J99]
Length = 339
Score = 20.4 bits (41), Expect = 7.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 14 KYVIPKGFDPTNKEYKNFLVKDLPKLV 40
KYV+ +PT KN L + + K++
Sbjct: 275 KYVLQGNLEPTRLYDKNALEEGVEKIL 301
>ref|NP_223972.1| putative TRNA
(5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
[Helicobacter pylori J99]
Length = 360
Score = 20.0 bits (40), Expect = 9.9
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 43 EVEIVMKLLFEINEVVDRD 61
E E++ KL+F + +++ +D
Sbjct: 166 EHEVIAKLVFPLGDLLKKD 184
>ref|NP_223848.1| putative [Helicobacter pylori J99]
Length = 222
Score = 20.0 bits (40), Expect = 9.9
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 25 NKEYKNFLVKDLPKLVHREVEIVMKLL 51
+K Y+N++ +H E++++ + L
Sbjct: 106 DKHYQNYIFHIASAALHSELQVLCEFL 132
>ref|NP_223388.1| putative [Helicobacter pylori J99]
Length = 192
Score = 20.0 bits (40), Expect = 9.9
Identities = 7/42 (16%), Positives = 22/42 (51%)
Query: 6 KKDLRISQKYVIPKGFDPTNKEYKNFLVKDLPKLVHREVEIV 47
K+ ++ Q+ + + ++NF++ D+P + E +++
Sbjct: 91 KEQSKVDQQERFKRLYSTYQYNHQNFILLDVPGIEGSEKKVI 132
>ref|NP_222754.1| putative [Helicobacter pylori J99]
Length = 335
Score = 20.0 bits (40), Expect = 9.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 9 LRISQKYVIPKGFDPTNKEYKNFLVKD 35
++I + + I + NK Y FL+KD
Sbjct: 233 VKIKRNHQIKEVTLKVNKRYGGFLLKD 259
>ref|NP_222728.1| PANTOATE--BETA-ALANINE LIGASE [Helicobacter pylori J99]
Length = 276
Score = 20.0 bits (40), Expect = 9.9
Identities = 12/36 (33%), Positives = 17/36 (46%)
Query: 4 PLKKDLRISQKYVIPKGFDPTNKEYKNFLVKDLPKL 39
PL+KDL + +K + F P E + K KL
Sbjct: 71 PLEKDLALCEKSGVNAVFAPKIGEMYPYEAKQRLKL 106
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.144 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,425
Number of Sequences: 1491
Number of extensions: 2658
Number of successful extensions: 21
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of query: 61
length of database: 494,079
effective HSP length: 37
effective length of query: 24
effective length of database: 438,912
effective search space: 10533888
effective search space used: 10533888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 40 (20.0 bits)