BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645074|ref|NP_207244.1| hypothetical protein
[Helicobacter pylori 26695]
(259 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Heli... 69 2e-13
ref|NP_223112.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobact... 27 0.41
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 26 1.2
ref|NP_224161.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 24 3.5
ref|NP_224001.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 24 3.5
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 24 4.6
ref|NP_223633.1| putative [Helicobacter pylori J99] 23 5.9
ref|NP_224138.1| glutamine fructose-6-phosphate aminotransf... 23 7.8
ref|NP_223534.1| putative [Helicobacter pylori J99] 23 7.8
ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARB... 23 7.8
>ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
Length = 331
Score = 68.6 bits (166), Expect = 2e-13
Identities = 32/79 (40%), Positives = 53/79 (66%)
Query: 61 TFFGGTGCKKLMELLSEIVIDSRSSKIALNRHYALTRLQWCDRTLRHNLQILERIGFLTA 120
+F GG G K+L+ +L ++ +++S+KIAL+RHYA LQ RTL N+ ILE GF+
Sbjct: 8 SFVGGQGAKRLLYILYKLAFNAKSNKIALDRHYAKMFLQVVARTLIKNVNILEEQGFIEV 67
Query: 121 FKNKKGYIFLSMHDFTKIE 139
K K+ Y+++ + D+ ++E
Sbjct: 68 IKGKQRYLYVYLKDYRELE 86
>ref|NP_223112.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 354
Score = 27.3 bits (59), Expect = 0.41
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Query: 53 ILNFPSNTTF-------FGGTGCKKLMELLSEIVID----SRSSKIALNRHYALTRLQWC 101
+++ PS T+F GGTG ++ ++ +ID + S NR ++ L
Sbjct: 95 LMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQNREFSDIELNLL 154
Query: 102 DRTLRHNLQILERI 115
D LR +QIL+ +
Sbjct: 155 DTILRQVMQILKEV 168
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 25.8 bits (55), Expect = 1.2
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 146 LNGESNLPNSFFLGICGYLKKLFKKLKDRAFRLANKHGVFFLK 188
+N S LP + Y + +FK+LK+ F+ ++K G + LK
Sbjct: 461 INSPSYLPKNEIKAYDPYFQ-VFKELKNTLFKKSDKEGYYALK 502
>ref|NP_224161.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 213
Score = 24.3 bits (51), Expect = 3.5
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 144 SGLNGESNLPNSFFLGICGYLKKLF--KKLKDRAFRLANKHGVFFLKIPKHFQMQNFNNI 201
+ L + L N+F LG YLKK F +L+ R R N + + P F Q+ N+
Sbjct: 82 TALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFFNDDPIEIM--PNIFYHQHALNV 139
>ref|NP_224001.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 213
Score = 24.3 bits (51), Expect = 3.5
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 144 SGLNGESNLPNSFFLGICGYLKKLF--KKLKDRAFRLANKHGVFFLKIPKHFQMQNFNNI 201
+ L + L N+F LG YLKK F +L+ R R N + + P F Q+ N+
Sbjct: 82 TALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFFNDDPIEIM--PNIFYHQHALNV 139
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 23.9 bits (50), Expect = 4.6
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 46 GCKLFKKILNFPSNTTFFGGTGCKKLM--ELLSEIVIDSRSSKIALNRHY 93
GC ++ + +N+ GT +++ ELL+ ++D R S LN Y
Sbjct: 373 GCAYVEETITALNNSLAHFGTQAEQIKQSELLARTILDFRGSLSNLNNTY 422
>ref|NP_223633.1| putative [Helicobacter pylori J99]
Length = 274
Score = 23.5 bits (49), Expect = 5.9
Identities = 12/31 (38%), Positives = 16/31 (50%)
Query: 126 GYIFLSMHDFTKIENYEHSGLNGESNLPNSF 156
G I + +H F K + E SGL G+ N F
Sbjct: 110 GIILIILHPFKKGDIIEISGLEGKVEALNFF 140
>ref|NP_224138.1| glutamine fructose-6-phosphate aminotransferase [Helicobacter
pylori J99]
Length = 597
Score = 23.1 bits (48), Expect = 7.8
Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 15/96 (15%)
Query: 105 LRHNLQILERIGFLTAFKNKKGYIFLSMHDFTKIENYEHSGLNGESNLPNSFFLGIC--- 161
L HN I+E L KG+ FLS D I + L E +L +F I
Sbjct: 96 LVHN-GIIENYASLKKELENKGHAFLSQTDTEVIAHLLEETLKSEGDLLKAFEKSISLLK 154
Query: 162 -GY-LKKLFKKLKDRAFRLAN---------KHGVFF 186
Y + L K+ K+ F + K GVFF
Sbjct: 155 GSYAILMLHKRAKESLFYAKSSSPLIVGKGKEGVFF 190
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 23.1 bits (48), Expect = 7.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 9 KVLDANILKEMHANNVCYSK 28
K+L A +L+ NN CY+K
Sbjct: 529 KILKAQMLELQKINNECYAK 548
>ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE
N-SUCCINYLTRANSFERASE [Helicobacter pylori J99]
Length = 401
Score = 23.1 bits (48), Expect = 7.8
Identities = 12/28 (42%), Positives = 17/28 (59%), Gaps = 1/28 (3%)
Query: 1 MQERVFKRKVLDANILKEMHANNVCYSK 28
++E FK K+L+ N E HANN+ K
Sbjct: 340 IEENEFK-KLLEVNSALEKHANNLYKGK 366
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.326 0.142 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 296,318
Number of Sequences: 1491
Number of extensions: 14319
Number of successful extensions: 54
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 11
length of query: 259
length of database: 494,079
effective HSP length: 76
effective length of query: 183
effective length of database: 380,763
effective search space: 69679629
effective search space used: 69679629
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)