BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645075|ref|NP_207245.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(360 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222834.1| THREONYL-TRNA SYNTHETASE [Helicobacter pyl... 31 0.056
ref|NP_223651.1| putative [Helicobacter pylori J99] 29 0.16
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 28 0.37
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 28 0.48
ref|NP_224153.1| putative [Helicobacter pylori J99] 27 0.62
ref|NP_223397.1| PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE [H... 27 0.62
ref|NP_223025.1| putative [Helicobacter pylori J99] 27 0.62
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 27 0.62
ref|NP_223618.1| putative [Helicobacter pylori J99] 27 0.82
ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobact... 27 0.82
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 26 1.4
ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 26 1.4
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 26 1.8
ref|NP_223788.1| putative [Helicobacter pylori J99] 26 1.8
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 26 1.8
ref|NP_223386.1| putative [Helicobacter pylori J99] 26 1.8
ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobac... 25 2.4
ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicob... 25 3.1
ref|NP_223931.1| RNA POLYMERASE ALPHA SUBUNIT [Helicobacter... 25 4.0
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 24 5.3
ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTE... 24 5.3
ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Heli... 24 5.3
ref|NP_223245.1| putative [Helicobacter pylori J99] 24 5.3
ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99] 24 6.9
ref|NP_223322.1| putative [Helicobacter pylori J99] 24 6.9
ref|NP_223057.1| RIBOFLAVIN KINASE [Helicobacter pylori J99] 24 6.9
ref|NP_222966.1| putative [Helicobacter pylori J99] 24 6.9
>ref|NP_222834.1| THREONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 612
Score = 30.8 bits (68), Expect = 0.056
Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 15/153 (9%)
Query: 58 QALERKETPYFD-SVIVDEAAKANPLELLM--VMALAKERIILVGDDRQLPHYLDDEIGK 114
+AL+ E YFD S + E + + LL + AL + VG + Y D +
Sbjct: 30 KALKGTEPIYFDDSPLALEVIRHSCAHLLAQSLKALYPDAKFFVGPVVEEGFYYDFKTTS 89
Query: 115 KLEDESQDAQDEIEKALKDSMFKKLKE---RAQKLKELDGKECFITLNMQYGMHPLLGEL 171
K+ +E + K S KE R Q L+ G E H ++ ++
Sbjct: 90 KISEEDLPKIEAKMKEFAKSKLAITKETLTREQALERFKGDEL---------KHAVMSKI 140
Query: 172 VSDVFYKPHNESFESPLKGKHLEEKPFKHNLRV 204
D+F FE KG HL F ++ ++
Sbjct: 141 SGDIFGVYQQGEFEDLCKGPHLPNTRFLNHFKL 173
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 29.3 bits (64), Expect = 0.16
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 110 DEIGKKLEDESQDAQD---EIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHP 166
DE+ K E++ + AQD + E + K+ K + R + L + D K+ F +
Sbjct: 7 DELENKFEEQEEQAQDTPLKQEPSTKEVKIPKKRGRKKSLLDEDKKKSFNIAFSPCVIKE 66
Query: 167 LLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEK 221
L L+ +K +F +HL KH + K L ++ ++KEK
Sbjct: 67 LNEFLLEFGSFKETRSTFIEEALIRHL-----KHRKNTQEQKLLKQLERLQNKEK 116
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 28.1 bits (61), Expect = 0.37
Identities = 14/46 (30%), Positives = 29/46 (62%), Gaps = 2/46 (4%)
Query: 105 PHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELD 150
P L+++ KK ++ ++A+++ +KA KD K+ +ERA+ L+
Sbjct: 138 PKELEEQ--KKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLE 181
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 27.7 bits (60), Expect = 0.48
Identities = 17/66 (25%), Positives = 35/66 (52%)
Query: 110 DEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLG 169
DE G++++ ++ ++ ++LKD+ LK+ + E K+ FIT + +LG
Sbjct: 214 DEKGEEIKFNDKEEALKLFESLKDNKACLLKDLKNSVVETKPKKPFITSTLLEKASSMLG 273
Query: 170 ELVSDV 175
+S+V
Sbjct: 274 LSISEV 279
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 27.3 bits (59), Expect = 0.62
Identities = 32/131 (24%), Positives = 62/131 (46%), Gaps = 11/131 (8%)
Query: 114 KKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVS 173
K L+ E+++ Q + L +E LK+ + KEC I ++ ++ + + +
Sbjct: 210 KTLQLEAKELQTQASLLLTYQHLINRRENRVILKDFEDKECMIEIDKSMPLNAFINKKFT 269
Query: 174 DVFYKPHNESFESPLKGKHLEEK-PFKHN----LRVLDNKPL--AWIDVKESKEKRNADG 226
+ K +S L+ ++L+EK FK N +R + + ++ VK SK KR +G
Sbjct: 270 -LSKKKKQKSQFLYLEEENLKEKIAFKENQINYVRDAAEESVLEMFMPVKNSKIKRPMNG 328
Query: 227 ---SYYRESEI 234
YY++ +I
Sbjct: 329 YEVLYYKDFKI 339
>ref|NP_223397.1| PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE [Helicobacter pylori J99]
Length = 318
Score = 27.3 bits (59), Expect = 0.62
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 69 DSVIVDEAA-KANPLELLMVMALAKERIILVGDD 101
D +IVD+ KAN E++ ++ AKER +++ DD
Sbjct: 195 DLIIVDKRREKANESEVMNIIGSAKERDVILVDD 228
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 27.3 bits (59), Expect = 0.62
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 21/147 (14%)
Query: 89 ALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQK--L 146
ALAKE ++ QL L+++ G E ++AQ+E++K M +++KE+ ++
Sbjct: 149 ALAKEE---PNNEEQLLPTLNEQEG---ETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVA 202
Query: 147 KELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLD 206
+ +E Q + P E VS E E+P K + E++P K +
Sbjct: 203 ENPQDEEKPKDDETQGSVEPPKDEEVSKEL--ETQEELETP-KEETQEQEPIKEETQ--- 256
Query: 207 NKPLAWIDVKESKEKRNADGSYYRESE 233
++KE K+++ D +E E
Sbjct: 257 -------EIKEEKQEKTQDSPSAQELE 276
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 27.3 bits (59), Expect = 0.62
Identities = 17/56 (30%), Positives = 23/56 (40%), Gaps = 2/56 (3%)
Query: 176 FYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKE--KRNADGSYY 229
FY+P + + L G ++ LR WI +KE KE K N YY
Sbjct: 378 FYEPFGKVLKEGLYGDFENKEKLLELLRFYSKDKGEWISLKEYKENLKENQKSIYY 433
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 26.9 bits (58), Expect = 0.82
Identities = 51/208 (24%), Positives = 96/208 (45%), Gaps = 30/208 (14%)
Query: 103 QLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQY 162
++ HY+ ++I L D + + KD+ L E A K+ D ++ F L ++
Sbjct: 3 EISHYIQEQIQDHL-----DLTTHLIHSNKDN--NALLEVADKI---DAEKLFSALYLKR 52
Query: 163 GMHPLLGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEK- 221
+ L +L + + K ESF+ K K LEE ++ LD L D++++ EK
Sbjct: 53 -LKFLNSQLQNSL--KSVIESFDYS-KEKALEE------IKALD---LGVKDIEKTYEKL 99
Query: 222 -RNADGSYYRESEITAIKECLDLFMKDEPDFTFGVIT----FFSEQKRLLEQALKGYANL 276
N + Y + + +K+ ++ ++D+ + +I F SE + +++Q L A L
Sbjct: 100 RANLEEEYSSVAVNSVVKKVIEE-VRDQKPYLASLINKPNEFNSEIESIMQQNLIKNAKL 158
Query: 277 EIGTVDSFQGKEFDVVFLSSVRTRHTEG 304
EI ++ K+F F S T+ + G
Sbjct: 159 EIEKINLSFSKDFCAEFASLNNTQLSSG 186
>ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobacter pylori J99]
Length = 414
Score = 26.9 bits (58), Expect = 0.82
Identities = 31/108 (28%), Positives = 48/108 (43%), Gaps = 12/108 (11%)
Query: 108 LDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPL 167
+D+E+ +L DES E KDS + K +KLKE K+ LN++
Sbjct: 227 VDNEMIVRLNDESYPTISLEENRFKDSDYLK-----EKLKE--AKDLIDALNLRKATIYK 279
Query: 168 LGELVSDVFYKPHNESFESPLKGKHLEEKPFKHNL----RVLDNKPLA 211
+G ++ + Y PLK L + F H++ R + NK LA
Sbjct: 280 IGLMLLEYQYDFFKGKELRPLKLLDLANE-FNHSVSTISRAISNKYLA 326
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 26.2 bits (56), Expect = 1.4
Identities = 31/147 (21%), Positives = 64/147 (43%), Gaps = 10/147 (6%)
Query: 215 VKESKEKRNADGSYYRESEITAIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQALKGYA 274
++E+ K + ++Y E I+E LD + + + + +++K L E ++ +
Sbjct: 803 MRETTIKNRKNDAFYDEKG--EIREFLDGSLGADK---YEIKNSSAQEKCLYENFMQVDS 857
Query: 275 NLEIGTVDSFQGKEFDVVFLSSVRTRHTEGFGFLKISSCLCVALSRQKRALIVAG----D 330
+E T++ + +VF R + G V + K+ L+V D
Sbjct: 858 EIEKDTIEESNDTKI-IVFGKLPRVKIPIGLNQTYSPDFGYVVENNDKKVLLVVETKGVD 916
Query: 331 REKFDTPESKDKVSGLFEFLQSCKKEG 357
++ PE K K+S +F ++ KK+G
Sbjct: 917 KKSELRPEEKRKISTAKKFFEALKKQG 943
>ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 463
Score = 26.2 bits (56), Expect = 1.4
Identities = 18/48 (37%), Positives = 24/48 (49%), Gaps = 4/48 (8%)
Query: 106 HYLDD----EIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKEL 149
HYL + E+ K L+ S + A D + LKER+Q LKEL
Sbjct: 310 HYLKNQSVQELLKLLKPFSFSDLSHLNPAQLDRLLDALKERSQTLKEL 357
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 25.8 bits (55), Expect = 1.8
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 117 EDESQDAQDEIEKALKDSMFKKLKERAQKLKE 148
EDES+ AQ++I+K + D KK+ E + ++
Sbjct: 150 EDESKKAQEQIQK-ITDEAIKKIDESVKNKED 180
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 25.8 bits (55), Expect = 1.8
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 108 LDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKEL 149
L E KKL ++ + +++IEKAL + K K++ ++L+ L
Sbjct: 152 LKAENEKKLNEKLELEREKIEKALHEKNELKFKQQEEQLEML 193
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 25.8 bits (55), Expect = 1.8
Identities = 34/138 (24%), Positives = 51/138 (36%), Gaps = 21/138 (15%)
Query: 210 LAWIDVKESKEKRNADG-SYYRESEITAIKECLDLFMKDEPDFTFGVITFFSEQKRLLEQ 268
+A D E E + D Y S+ E L+L +K D + FF EQ ++LE
Sbjct: 223 IAVFDALERNEIKRLDSVMLYAASQFAVGSERLNLAVKSIEDELALRLKFFKEQDKMLE- 281
Query: 269 ALKGYANLEIGTVDSFQGKEFDVVFLSSV--------RTRHTEGFGFLKISSCLCVALSR 320
Y L+ Q E+D+ +S+ RH G + CL L
Sbjct: 282 ----YNRLK-------QRTEYDLEMISATGVCKGIENYARHFTGKAPNETPFCLFDYLGI 330
Query: 321 QKRALIVAGDREKFDTPE 338
+R +V D P+
Sbjct: 331 FEREFLVIVDESHVSLPQ 348
Score = 23.9 bits (50), Expect = 6.9
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 24 LLEYISVLERTPWDLESLLRDYNFVFSNTTGQHNQALERKETPY--FD---------SVI 72
+LEY + +RT +DLE + +H ETP+ FD VI
Sbjct: 279 MLEYNRLKQRTEYDLEMISATGVCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVI 338
Query: 73 VDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDD 110
VDE+ + P M + +LV +LP LD+
Sbjct: 339 VDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDN 376
>ref|NP_223386.1| putative [Helicobacter pylori J99]
Length = 569
Score = 25.8 bits (55), Expect = 1.8
Identities = 24/93 (25%), Positives = 43/93 (45%), Gaps = 3/93 (3%)
Query: 83 ELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKER 142
EL+ + KE +++V P L E K ++E Q KAL+D+ KK+KE
Sbjct: 209 ELISLSEEEKESLMIVAVAAN-PFDLGVEHWLKHQEEFQKLSHI--KALQDATQKKIKEN 265
Query: 143 AQKLKELDGKECFITLNMQYGMHPLLGELVSDV 175
KL ++ + + ++ Y P + + D+
Sbjct: 266 GGKLTIIEEAKKSVIQDVVYRQMPPAKQALQDI 298
>ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 676
Score = 25.4 bits (54), Expect = 2.4
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 11 LSSQSPNDKRIRVLLEYISVLERTPWDLESLLRDYNFV-FSNTTGQHNQALERKETPYFD 69
LSS++P E ++LE + E+ + ++++ +++ +A+ + +PY +
Sbjct: 155 LSSKNPEHAPYAAFYE--NILE----EFENTKKKHDYIDYNDLLLLFKKAMLERSSPYKE 208
Query: 70 SVIVDEAAKANPLELLMVMALAKERIILVGD 100
V+ DE NPL+ ++ A+ + VGD
Sbjct: 209 -VLCDEFQDTNPLQESILDAINPPSLFCVGD 238
>ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicobacter pylori J99]
Length = 395
Score = 25.0 bits (53), Expect = 3.1
Identities = 37/144 (25%), Positives = 67/144 (45%), Gaps = 11/144 (7%)
Query: 1 MSLANDLLEILSSQSPNDKRIRVLLEYISVLERTPWDLESLLRDYNFVFSNTTGQHNQAL 60
M +DL+E ++ + K + + +L+ +L+ L R Y V N Q Q +
Sbjct: 1 MEKISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLAR-YLVVEENKQLQLIQLV 59
Query: 61 ERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKK--LED 118
E E D +V++ +K + ++ AKE V +L + L E K+ +
Sbjct: 60 EVLEDD--DERLVNDPSK------YISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINR 111
Query: 119 ESQDAQDEIEKALKDSMFKKLKER 142
+D Q ++EKAL+DS F+ ++R
Sbjct: 112 LFKDLQYQLEKALEDSHFEAFQKR 135
>ref|NP_223931.1| RNA POLYMERASE ALPHA SUBUNIT [Helicobacter pylori J99]
Length = 344
Score = 24.6 bits (52), Expect = 4.0
Identities = 14/44 (31%), Positives = 23/44 (51%), Gaps = 4/44 (9%)
Query: 110 DEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKE 153
DEI +KL D E+ ++S LK+R +KL++ G +
Sbjct: 305 DEIAEKLNDLGYPVGTELSPEQRES----LKKRLEKLEDKGGND 344
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 24.3 bits (51), Expect = 5.3
Identities = 25/110 (22%), Positives = 48/110 (42%), Gaps = 13/110 (11%)
Query: 50 SNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLD 109
+N HN A+ + + AK N + L L ++++ + D+ H+L+
Sbjct: 73 NNLNESHNNAINIYFSTIQGLFSLFTRAKENAITL---EDLKDQKLVFLADEA---HHLN 126
Query: 110 DEIGKKLED----ESQDAQDEIEKAL---KDSMFKKLKERAQKLKELDGK 152
E KKL D E ++ + ++ AL KD++ + K K ++ K
Sbjct: 127 TETKKKLNDSEASEKRNWESVVKLALEQNKDNLLLEFSATIPKEKSVEDK 176
>ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTEIN [Helicobacter pylori
J99]
Length = 448
Score = 24.3 bits (51), Expect = 5.3
Identities = 15/38 (39%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Query: 57 NQALERKETPYFDSVIVDEAAK-ANPLELLMVMALAKE 93
N AL+R + FD +IVD A + A EL+ + KE
Sbjct: 165 NNALKRAKEAQFDVLIVDSAGRLAIDKELMQELKEVKE 202
>ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Helicobacter pylori J99]
Length = 425
Score = 24.3 bits (51), Expect = 5.3
Identities = 21/82 (25%), Positives = 37/82 (44%), Gaps = 15/82 (18%)
Query: 111 EIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLKELDGKECFI-TLNMQYGMHPLLG 169
+IG K ED+ Q+A + LK S + +GK+C + LN+ P G
Sbjct: 342 KIGFKAEDDQQNAIKNAQNLLKPS-------------QDNGKDCSVAALNLIKDSRP-FG 387
Query: 170 ELVSDVFYKPHNESFESPLKGK 191
L ++++ H ++ + P K
Sbjct: 388 SLDNELWLFSHKKTQKIPSMNK 409
>ref|NP_223245.1| putative [Helicobacter pylori J99]
Length = 372
Score = 24.3 bits (51), Expect = 5.3
Identities = 37/171 (21%), Positives = 62/171 (35%), Gaps = 23/171 (13%)
Query: 56 HNQALERKETPYFDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKK 115
HNQAL + PYF + + + A +++L + ++ D +I
Sbjct: 37 HNQALVTQTPPYFTQLTIPKPNDALSAHASSLISLPNDNLLSAYFSGTKEGARDVKISAN 96
Query: 116 LEDESQDAQDE-----IEKALKDSMFKKLKERAQKLKEL-DGKECFITLNMQYGMHPLLG 169
L D + E ++ L + +K+ L L D K + + G G
Sbjct: 97 LFDSKTNRWSEAFILLTKEELSHHSHEYIKKLGNPLLFLHDNKILLFVVGVSMG-----G 151
Query: 170 ELVSDVFYKPHNESFESPLKGKH------LEEKPFKHNLRVLDNKPLAWID 214
S ++ FES L+ H L PF + ++ NKPL D
Sbjct: 152 WATSKIY------QFESALEPIHFKFARKLSLSPFLNLSHLVRNKPLNTTD 196
>ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99]
Length = 425
Score = 23.9 bits (50), Expect = 6.9
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 13/104 (12%)
Query: 134 SMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKPHNESFESPLKGKHL 193
S+ +L + Q ++ + E + Y + ++ L S + E+ + K L
Sbjct: 178 SILVELDRKIQAFEQKNNDE-----KLSYSIEAIIDALGSQISITLVEENKRKAFETKEL 232
Query: 194 EEK---PFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEI 234
+ K+NL PLA++D E K+K A + S +
Sbjct: 233 AQNFLNDLKNNLN-----PLAFLDAIEQKDKEKAPPKPFTTSNL 271
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 23.9 bits (50), Expect = 6.9
Identities = 14/49 (28%), Positives = 26/49 (52%)
Query: 99 GDDRQLPHYLDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLK 147
G + + Y+ ++ GK SQ Q +K +++S K L+E +KL+
Sbjct: 355 GGGQFITFYIKEKRGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLR 403
>ref|NP_223057.1| RIBOFLAVIN KINASE [Helicobacter pylori J99]
Length = 280
Score = 23.9 bits (50), Expect = 6.9
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 25 LEYISVLERTPWDLESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKAN 80
LE++ +L++ +LE L+ Y+F F + + N AL KE + ++IV E N
Sbjct: 82 LEFLDLLKKKFPNLERLVVGYDFRFGHE--RQNDALFLKER-FEKTIIVPEVKIQN 134
>ref|NP_222966.1| putative [Helicobacter pylori J99]
Length = 152
Score = 23.9 bits (50), Expect = 6.9
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 162 YGMHPLLGELVSDVFYKPHNESFESPLK-GKHLEEKPFKHNLRVLDNK 208
YG HP +G + + HNES S G K F+ ++ +D+K
Sbjct: 83 YGKHPEIGLYLEQKVKECHNESRRSTQTIGISKLIKEFEFKIKPIDSK 130
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.136 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 388,184
Number of Sequences: 1491
Number of extensions: 18585
Number of successful extensions: 89
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 32
length of query: 360
length of database: 494,079
effective HSP length: 79
effective length of query: 281
effective length of database: 376,290
effective search space: 105737490
effective search space used: 105737490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)