BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645076|ref|NP_207246.1| hypothetical protein
[Helicobacter pylori 26695]
(128 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224146.1| L-ALANINE DEHYDROGENASE [Helicobacter pylo... 25 0.90
ref|NP_224046.1| putative PROTEASE IV [Helicobacter pylori ... 25 0.90
ref|NP_224156.1| DNA POLYMERASE III [Helicobacter pylori J99] 24 1.2
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 24 1.2
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 24 1.2
ref|NP_223790.1| putative [Helicobacter pylori J99] 24 1.5
ref|NP_223055.1| putative [Helicobacter pylori J99] 24 1.5
ref|NP_223553.1| Hydrogenase expression/formation protein [... 23 2.0
ref|NP_223632.1| putative [Helicobacter pylori J99] 23 3.4
ref|NP_223418.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helico... 23 3.4
ref|NP_223750.1| putative [Helicobacter pylori J99] 22 4.5
ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99] 22 4.5
ref|NP_223205.1| cag island protein [Helicobacter pylori J99] 22 4.5
ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 22 4.5
ref|NP_223761.1| putative [Helicobacter pylori J99] 22 5.8
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 22 5.8
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 22 5.8
ref|NP_223657.1| putative [Helicobacter pylori J99] 22 7.6
ref|NP_223585.1| putative [Helicobacter pylori J99] 22 7.6
ref|NP_223191.1| cag island protein, DNA transfer protein [... 22 7.6
ref|NP_223158.1| putative [Helicobacter pylori J99] 22 7.6
ref|NP_222839.1| putative [Helicobacter pylori J99] 22 7.6
ref|NP_224031.1| UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCT... 21 10.0
ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERA... 21 10.0
>ref|NP_224146.1| L-ALANINE DEHYDROGENASE [Helicobacter pylori J99]
Length = 380
Score = 24.6 bits (52), Expect = 0.90
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 83 EYKKIHAHFYYNLINQEFLHFVDLERVRAIDG 114
+Y K+ H YY+L + E L + ++A++G
Sbjct: 203 DYAKLQNHPYYHLYDLEVLSVNEANIIQALNG 234
>ref|NP_224046.1| putative PROTEASE IV [Helicobacter pylori J99]
Length = 292
Score = 24.6 bits (52), Expect = 0.90
Identities = 11/36 (30%), Positives = 21/36 (57%), Gaps = 1/36 (2%)
Query: 84 YKKIHAHFYYNLINQEFLHFV-DLERVRAIDGKEVK 118
+K F NL+N+++ FV D+ + R ++ K+ K
Sbjct: 182 WKPNEKEFLQNLVNEQYQMFVDDVAKARKLNAKDYK 217
>ref|NP_224156.1| DNA POLYMERASE III [Helicobacter pylori J99]
Length = 323
Score = 24.3 bits (51), Expect = 1.2
Identities = 11/29 (37%), Positives = 17/29 (57%)
Query: 29 IRHNDLGLNAIEKCALKLKESGVKDEELK 57
++H DL L+A+EK +L + E LK
Sbjct: 53 LKHQDLNLSALEKSLSRLIHDEINLEYLK 81
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 24.3 bits (51), Expect = 1.2
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 66 LDLLEPILEKIETKTLEEYKKIHAHFYYNLINQEFLHFVDLERVR 110
LDL++ ++E+ +T+ L++ K H N+E+ L++++
Sbjct: 192 LDLIDIVIEETKTQKLQKEIKSKVHQKMEQTNKEYFLKEQLKQIQ 236
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 24.3 bits (51), Expect = 1.2
Identities = 15/35 (42%), Positives = 19/35 (53%)
Query: 36 LNAIEKCALKLKESGVKDEELKGFLGFGGELDLLE 70
LNAI+K ++ V DEEL+ F E D LE
Sbjct: 128 LNAIDKIKNTEEKQKVLDEELEDGYDFLKEKDFLE 162
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 23.9 bits (50), Expect = 1.5
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 29 IRHNDLGLNAIEKCALKLKESGVKDEELKGFLGFGGE-LDLLEPILEKIETKTLEEYKKI 87
++ ++ N E+ ++ +EELK + E +EP ++ + + LEEYK+
Sbjct: 51 LKESNFNFNNPEQLLALIRSFLEPEEELKRIYFYVSEPFTEVEPRIKSNKKEELEEYKEK 110
Query: 88 HAHFYYNLINQ 98
+ Y +N+
Sbjct: 111 NPKEYEEKVNK 121
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 23.9 bits (50), Expect = 1.5
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 65 ELDLLEPILEKIETKTLEEYKKIHAHFYYNLI---NQEFLHFVDLERVRA 111
+L L + + + TL + K + H+YY L + L +++ E ++A
Sbjct: 437 DLFLNSALRQSLNLPTLLDKKNLQKHYYYQLFKNSKEVALSYIESETLKA 486
>ref|NP_223553.1| Hydrogenase expression/formation protein [Helicobacter pylori J99]
Length = 370
Score = 23.5 bits (49), Expect = 2.0
Identities = 13/39 (33%), Positives = 20/39 (50%)
Query: 24 CVELEIRHNDLGLNAIEKCALKLKESGVKDEELKGFLGF 62
C+E+ GL I++ ALKLKE+ + K F +
Sbjct: 272 CMEVRENFEWRGLGNIKRSALKLKEAFASYDAEKVFKAY 310
>ref|NP_223632.1| putative [Helicobacter pylori J99]
Length = 411
Score = 22.7 bits (47), Expect = 3.4
Identities = 10/21 (47%), Positives = 15/21 (70%)
Query: 95 LINQEFLHFVDLERVRAIDGK 115
L+N +FL ++ +VRAID K
Sbjct: 2 LLNYDFLERMEGSKVRAIDEK 22
>ref|NP_223418.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helicobacter pylori J99]
Length = 293
Score = 22.7 bits (47), Expect = 3.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 40 EKCALKLKESGVKDEELKGFLGFGGELDLLEPILEKI 76
E+ K +ES K+E + +GF + DL+E +L+ +
Sbjct: 15 EEVKEKKRESVPKEELEEILIGFDIQYDLIESLLKHL 51
>ref|NP_223750.1| putative [Helicobacter pylori J99]
Length = 435
Score = 22.3 bits (46), Expect = 4.5
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 56 LKGFLGFGGEL 66
LKG+LG GG+L
Sbjct: 197 LKGYLGLGGQL 207
>ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99]
Length = 508
Score = 22.3 bits (46), Expect = 4.5
Identities = 21/86 (24%), Positives = 38/86 (43%), Gaps = 3/86 (3%)
Query: 33 DLGLNAIEKCALKLKESGVKDEELKGFLGFGGELDLLEPILEKIETKTLEEYKKIHAHFY 92
+L I + +++ E K LKG + F + L ++E + K + K H H
Sbjct: 286 ELKRKIIGETFIEVFEKEAKKHHLKGKIEFLAQGTLYPDVIESVSVKGPSKVIKTH-HNV 344
Query: 93 YNLINQEFLHFVDLERVRAIDGKEVK 118
L E++ F +E +R + EV+
Sbjct: 345 GGL--PEWMDFKLIEPLRELFKDEVR 368
>ref|NP_223205.1| cag island protein [Helicobacter pylori J99]
Length = 237
Score = 22.3 bits (46), Expect = 4.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 57 KGFLGFGGELDLLEPILEKIETKTLEE 83
K FL + ELD LE LE+ + + L+E
Sbjct: 202 KVFLNYLEELDALERSLEQSKRQYLQE 228
>ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 545
Score = 22.3 bits (46), Expect = 4.5
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 81 LEEYKKIHAHFYYNLINQEFLHFV--DLERVRAIDGKEVKC 119
L+E I+AH L+N + + F+ L + I K+++C
Sbjct: 458 LKENFPINAHALKELLNSDLMQFIFESLFKTHKILRKDLEC 498
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 21.9 bits (45), Expect = 5.8
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 62 FGGELDLLEPILEKIETKTLEEYKKIHAHFYYNLIN 97
F E D +L E K E KK+ A Y+L N
Sbjct: 518 FNSESDHAIAVLSHYEAKLKELEKKLDADSIYSLKN 553
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 21.9 bits (45), Expect = 5.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 62 FGGELDLLEPILEKIETKTLEEYKK 86
F ++L+E +L K L+EY K
Sbjct: 308 FKDRIELIEELLSKYHPTRLKEYTK 332
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 21.9 bits (45), Expect = 5.8
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 66 LDLLEPILEKIETKTLEEYKKIHAHFYYNLINQEFLHFVDLERVRAIDGKE------VKC 119
LD++ I KTL K+ NL+ E L + +L + + + ++ +K
Sbjct: 268 LDIIFSIEPMSVNKTLSFLKERAKFSMSNLVKNELLEYQELVKTKRLSMQKFALNVLIKA 327
Query: 120 PTAKD 124
P+ +D
Sbjct: 328 PSLED 332
>ref|NP_223657.1| putative [Helicobacter pylori J99]
Length = 325
Score = 21.6 bits (44), Expect = 7.6
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 86 KIHAHFYYNLINQEFLHFVDLERVRAID 113
+IH F + ++++ +D+ RAI+
Sbjct: 265 EIHKEFLHTMLDERKSKIIDVAHTRAIE 292
>ref|NP_223585.1| putative [Helicobacter pylori J99]
Length = 200
Score = 21.6 bits (44), Expect = 7.6
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 88 HAHFYYNLINQEFLHFVDLERVRAI 112
HAH +++ + EF F++ VR +
Sbjct: 68 HAHHFWDKESPEFQRFIENHCVRYV 92
>ref|NP_223191.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 748
Score = 21.6 bits (44), Expect = 7.6
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 59 FLGFGGELDLLEPILEKIETK 79
++ FG ++ L E IL +I+T+
Sbjct: 303 YVDFGNDVVLTEDILSQIDTR 323
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 21.6 bits (44), Expect = 7.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 62 FGGELDLLEPILEKIETKTLEEYKKIHAHFYYNLIN 97
F E D +L E K E KK+ A Y+L N
Sbjct: 438 FNSESDHAIAVLSHYEAKLKELDKKLDADSIYSLKN 473
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 21.6 bits (44), Expect = 7.6
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 67 DLLEPILEKIETKTLEEYKK 86
++LE I K +T T++EY++
Sbjct: 92 EILEVIANKKKTMTMKEYRE 111
>ref|NP_224031.1| UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE [Helicobacter pylori
J99]
Length = 259
Score = 21.2 bits (43), Expect = 10.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 84 YKKIHAHFYYNLINQEFLHFVDL 106
+ K HA+F NL EF +DL
Sbjct: 213 FAKEHANFLVNLGGAEFEEALDL 235
>ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE [Helicobacter pylori
J99]
Length = 581
Score = 21.2 bits (43), Expect = 10.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 28 EIRHNDLGLNAIEKCALKLKESGVK 52
EI + D +EK A KLKE VK
Sbjct: 536 EIINYDFKNPLLEKLAEKLKEGSVK 560
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.142 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,681
Number of Sequences: 1491
Number of extensions: 7577
Number of successful extensions: 28
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 24
length of query: 128
length of database: 494,079
effective HSP length: 68
effective length of query: 60
effective length of database: 392,691
effective search space: 23561460
effective search space used: 23561460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)