BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645077|ref|NP_207247.1| hypothetical protein
[Helicobacter pylori 26695]
(472 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 37 0.001
ref|NP_222872.1| putative histidine kinase sensor protein [... 31 0.060
ref|NP_224097.1| putative [Helicobacter pylori J99] 29 0.30
ref|NP_223391.1| putative aminotransferase [Helicobacter py... 29 0.30
ref|NP_223718.1| GLUTAMATE DEHYDROGENASE [Helicobacter pylo... 28 0.39
ref|NP_223498.1| putative [Helicobacter pylori J99] 28 0.39
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 28 0.51
ref|NP_223610.1| putative [Helicobacter pylori J99] 28 0.66
ref|NP_222949.1| NEUTROPHIL-ACTIVATING PROTEIN A [Helicobac... 28 0.66
ref|NP_224029.1| lipopolysaccharide biosynthesis protein [H... 27 1.5
ref|NP_223541.1| putative [Helicobacter pylori J99] 27 1.5
ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobact... 26 1.9
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 26 2.5
ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobact... 26 2.5
ref|NP_223614.1| putative [Helicobacter pylori J99] 26 2.5
ref|NP_223094.1| HOMOSERINE KINASE [Helicobacter pylori J99] 26 2.5
ref|NP_223486.1| INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE [He... 25 3.3
ref|NP_223286.1| AMINOTRANSFERASE [Helicobacter pylori J99] 25 3.3
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 25 3.3
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 25 3.3
ref|NP_223731.1| putative [Helicobacter pylori J99] 25 4.3
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 25 4.3
ref|NP_222733.1| putative [Helicobacter pylori J99] 25 4.3
ref|NP_223872.1| putative [Helicobacter pylori J99] 25 5.6
ref|NP_223695.1| PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN [... 25 5.6
ref|NP_223516.1| putative [Helicobacter pylori J99] 25 5.6
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 25 5.6
ref|NP_223122.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 25 5.6
ref|NP_222827.1| putative [Helicobacter pylori J99] 25 5.6
ref|NP_222760.1| GDP-D-mannose dehydratase [Helicobacter py... 25 5.6
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 24 7.3
ref|NP_223875.1| putative [Helicobacter pylori J99] 24 7.3
ref|NP_223442.1| putative [Helicobacter pylori J99] 24 7.3
ref|NP_223411.1| putative [Helicobacter pylori J99] 24 7.3
ref|NP_223051.1| putative [Helicobacter pylori J99] 24 7.3
ref|NP_223009.1| putative [Helicobacter pylori J99] 24 7.3
ref|NP_223770.1| putative [Helicobacter pylori J99] 24 9.5
ref|NP_223662.1| putative [Helicobacter pylori J99] 24 9.5
ref|NP_223514.1| putative [Helicobacter pylori J99] 24 9.5
ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (... 24 9.5
ref|NP_223270.1| putative [Helicobacter pylori J99] 24 9.5
ref|NP_223188.1| cag island protein [Helicobacter pylori J99] 24 9.5
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 36.6 bits (83), Expect = 0.001
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 23/186 (12%)
Query: 243 KPQDGSSLTRVELERYRDGIYFLVENLL---KNPLIKEREN--AQEEKHYKKNAEIDDRS 297
K D SL+ +LER R+ +E+ L N + + +N ++ + Y A I
Sbjct: 188 KRVDTLSLSDEDLERIREKKNQEIEDCLMQLNNNIYDKEKNFLSEHNRVYLVIASIIANL 247
Query: 298 QLSNLNAPKPLFECFVGVNLAKAKYYSKKEEREKEKMILNFCKIFEIILFEAIQKQPKPD 357
+ NL AP +N K + ER+ +K++ E ++ P
Sbjct: 248 GIPNLVAP---------LNKEDLKSSDENGERDGDKILRKIRSFLE--------RKQLPL 290
Query: 358 FKNKDELLGDYPNLKNLDSLREVR-EDFLKRAFKNDEASLGAYVLVLLSCKYFESVFEKV 416
K + + P LKN ++ + + E LKR F +LG Y + LS + +F ++
Sbjct: 291 EKRESIISSLEPLLKNENNNKAINGESRLKRCFSEIVDNLGVYYKIGLSTDFTGKLFNEM 350
Query: 417 QEWLDF 422
WL F
Sbjct: 351 YRWLGF 356
>ref|NP_222872.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 442
Score = 31.2 bits (69), Expect = 0.060
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 13/109 (11%)
Query: 359 KNKDELLGDYPN-----LKNLDSLREVREDFLKRAFKNDEAS------LGAYVLVLLSCK 407
K KDE+ GD N ++ ++++ E R FL+ L + + LSCK
Sbjct: 179 KQKDEI-GDLANEFDNCIQKINAMNESRVLFLRSIMHELRTPITKGKILSSMLKEELSCK 237
Query: 408 YFESVFEKVQEWLDFIARLIALRGHVHKITKELERLEEEDLEKLEKQAL 456
F S+F+ + ++ AR+ L + KE + L + ++K+EK L
Sbjct: 238 RFSSIFDHLNMLIEQFARIEQLASKNYGSNKE-KFLMSDLIDKIEKMLL 285
>ref|NP_224097.1| putative [Helicobacter pylori J99]
Length = 376
Score = 28.9 bits (63), Expect = 0.30
Identities = 12/43 (27%), Positives = 24/43 (54%)
Query: 253 VELERYRDGIYFLVENLLKNPLIKERENAQEEKHYKKNAEIDD 295
V ++ Y + YFL+ L N ++ +E +K+NA+I++
Sbjct: 114 VTIDFYANANYFLIYGALANAVVGSINALNDEIRFKRNAQIEE 156
>ref|NP_223391.1| putative aminotransferase [Helicobacter pylori J99]
Length = 369
Score = 28.9 bits (63), Expect = 0.30
Identities = 10/18 (55%), Positives = 15/18 (82%)
Query: 82 HPIEKMAEKLEETNPEWF 99
HP+EK+A+ ++ETNP F
Sbjct: 139 HPVEKIAQAIKETNPNVF 156
>ref|NP_223718.1| GLUTAMATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 448
Score = 28.5 bits (62), Expect = 0.39
Identities = 43/158 (27%), Positives = 65/158 (40%), Gaps = 21/158 (13%)
Query: 209 YEEKVMQALAKKYP---SFLQDLHD----IKKYRNKDKHGEKPQDGSSLTRVELERYRDG 261
Y EK++Q+L KKYP F Q +++ +K + DK EK L E E
Sbjct: 2 YVEKILQSLQKKYPYQKEFHQAVYEAITSLKPLLDSDKSYEKHAVLERLIEPERE----- 56
Query: 262 IYFLVENLLKNPLIKERENAQEEKH-----YKKNAEID---DRSQLSNLNAPKPLFECFV 313
I+F V L N I+ + E + YK + S + L + L
Sbjct: 57 IFFRVCWLDDNHQIQVNRGCRVEFNSAIGPYKGGLRFHPSVNESVIKFLGFEQVLKNSLT 116
Query: 314 GVNLAKAKYYSKKEEREK-EKMILNFCKIFEIILFEAI 350
+ + AK S + +EK E I+ FC+ F L+ I
Sbjct: 117 TLAMGGAKGGSDFDPKEKSEHEIMRFCQAFMNELYRHI 154
>ref|NP_223498.1| putative [Helicobacter pylori J99]
Length = 245
Score = 28.5 bits (62), Expect = 0.39
Identities = 23/77 (29%), Positives = 39/77 (49%), Gaps = 12/77 (15%)
Query: 407 KYFESVFEKV------QEWLDFIARLIALRGHVHKITKELERLEEEDLEKLEKQALEYF- 459
+Y E + EK+ QE+L+ L++L+ V E ER + K +KQ+++++
Sbjct: 117 EYKELLSEKLIHAKSSQEFLNTANMLLSLQSQVLSFVVENERKKAFLQMKAKKQSVDFYA 176
Query: 460 -----NKIANKIYLKEK 471
+I IYLKEK
Sbjct: 177 LYPNLGEIGGVIYLKEK 193
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 28.1 bits (61), Expect = 0.51
Identities = 18/49 (36%), Positives = 29/49 (58%), Gaps = 3/49 (6%)
Query: 346 LFEAIQKQPKPDFKNKD-ELLGDYPNLKNLDSLREVREDFLKRAFKNDE 393
LF+A+ + + D ++KD + DY +L DSL+E D+ AF+N E
Sbjct: 631 LFQAVCRVNRLDGEDKDFGCIIDYSDL--FDSLQEAHSDYTNGAFENYE 677
Score = 23.9 bits (50), Expect = 9.5
Identities = 15/74 (20%), Positives = 29/74 (38%), Gaps = 1/74 (1%)
Query: 129 DDRLYTIECNLKNLDTHQKKFEICGALYDIYEQIFDETPSLKGRDLETYKAQDLSKKFMH 188
D L+ C + LD K F D+++ + + E Y+ +D+
Sbjct: 628 DHGLFQAVCRVNRLDGEDKDFGCIIDYSDLFDSLQEAHSDYTNGAFENYEREDIQGLISD 687
Query: 189 LGFEQISKDLNDSR 202
++I K L ++R
Sbjct: 688 KS-QKIKKKLEETR 700
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 27.7 bits (60), Expect = 0.66
Identities = 20/69 (28%), Positives = 38/69 (54%), Gaps = 6/69 (8%)
Query: 230 DIKKYRNKDKHGEKPQDGSSLTRVELERYRDGIYFLVENLLKNPLIKERENAQEEKHYKK 289
+I+ +N+ KH + Q+ +ELE+ + LVEN +KN IKE ++ +KK
Sbjct: 110 EIENLQNEIKHKSEKQEVLKKEMLELEKLALELENLVENEVKN--IKE----TQQIIFKK 163
Query: 290 NAEIDDRSQ 298
E+ ++++
Sbjct: 164 KEELVEKTE 172
>ref|NP_222949.1| NEUTROPHIL-ACTIVATING PROTEIN A [Helicobacter pylori J99]
Length = 144
Score = 27.7 bits (60), Expect = 0.66
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 19/103 (18%)
Query: 60 EVYYLHAKAFDDSKEIRVECKNHPIEKMAEKL------EETNPEWFE-----------KW 102
E+Y A FDD E V+ +HP+ ++E + EET + K
Sbjct: 42 EIYEGFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKH 101
Query: 103 REKQYTQTGESKPSKRIKVFKNFTAFDDRLYTIECNLKNLDTH 145
EK++ + + + KV T DD+L ++ ++ L+ H
Sbjct: 102 LEKEFKELSNTAEKEGDKV--TVTYADDQLAKLQKSIWMLEAH 142
>ref|NP_224029.1| lipopolysaccharide biosynthesis protein [Helicobacter pylori J99]
Length = 367
Score = 26.6 bits (57), Expect = 1.5
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 201 SRLNA-LLCYEEKVMQALAKKYPS-FLQDLHDIKKYRNKDKHGEKPQDGSSLTRVELERY 258
S LN L+CYE + LA + + F D + KD+ Q S T + +
Sbjct: 294 SSLNGRLICYEAEASFWLANLFCTPFKNDFFKERLEMAKDQ-----QMQSFKTHIRSKTI 348
Query: 259 RDGIYFLVENLLK 271
RD YF ++N+LK
Sbjct: 349 RDYFYFRIKNILK 361
>ref|NP_223541.1| putative [Helicobacter pylori J99]
Length = 271
Score = 26.6 bits (57), Expect = 1.5
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 380 VREDFLKRAFKNDEASLGAYVLVLLSCK-YFESVFEKVQEWLDFIARLIALRGHVHKI 436
V+ ++ K AF+NDE Y L + + K ++ V++K + +A+ I HKI
Sbjct: 175 VKSNWEKTAFENDERKDSVYALEVNAAKSFYSGVYQKALNAKE-VAQKIVFLSMSHKI 231
>ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobacter pylori J99]
Length = 414
Score = 26.2 bits (56), Expect = 1.9
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 60 EVYYLHAKAFDDSKEIRV--ECKNHPIEKMAEKLEETNPEWF--EKWREKQYTQTGESKP 115
E ++ +K F K +++ KN P + EK E PE F E E ES P
Sbjct: 182 EKHHEFSKDFYYEKALKILKSFKNPPAIEFLEKEIEVIPELFILEVDNEMIVRLNDESYP 241
Query: 116 SKRIKV--FKNFTAFDDRLYTIECNLKNLDTHQKKFEICGALYDIYEQIFDETPSLKGRD 173
+ ++ FK+ ++L + + L+ + G + Y+ F KG++
Sbjct: 242 TISLEENRFKDSDYLKEKLKEAKDLIDALNLRKATIYKIGLMLLEYQYDF-----FKGKE 296
Query: 174 LETYKAQDLSKKFMH 188
L K DL+ +F H
Sbjct: 297 LRPLKLLDLANEFNH 311
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 25.8 bits (55), Expect = 2.5
Identities = 41/184 (22%), Positives = 77/184 (41%), Gaps = 23/184 (12%)
Query: 92 EETNPEWFEKWREKQYTQTGESKPSKRIKVFKN--FTAFDDRLYTIECNLKNLDTHQKKF 149
+E E E + EK+ E+ P + + F+ F Y +CN T++K
Sbjct: 18 QEPKKETIENF-EKEINSLLENVPRQDDEEFQKNEINKFLKNAYGYDCN-----TYEK-- 69
Query: 150 EICGALY-DIYEQIFDETPSLKGR-DLETYKAQDLSKKFMHLGF---EQISKDLNDSRLN 204
+ +Y D ++ E +L + + + LSK F + E+I K+ N+S +
Sbjct: 70 -VDSVIYVDKEVRVLIEVKALNNKTEFPKNRENPLSKAFCQMVLYFLEEIEKEKNNSLKH 128
Query: 205 ALLCYEEKVMQALAKKYPSFLQDLHDIKKYRNKDKHGEKPQDGSSLTRVELERYRDGIYF 264
++C + K S +D K Y+N K ++G+ ++ + Y+D F
Sbjct: 129 TIICNAHEFFLFDCKDLLSLKEDKRIKKFYKNYAK-----KEGTDSSKPKF--YKDLEQF 181
Query: 265 LVEN 268
L E+
Sbjct: 182 LQED 185
Score = 24.3 bits (51), Expect = 7.3
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 43 KQDTLRHAKVVSWHVLGEVYYLHAKAFDDSKEIRVECKNHPIEKMAEK 90
K+++ R ++ +LG++ YL++ FD + +E K H I+ + K
Sbjct: 333 KKNSERLPEIKENKILGKIPYLNSSLFDKTP---LELKGHEIKLLDNK 377
>ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobacter pylori J99]
Length = 503
Score = 25.8 bits (55), Expect = 2.5
Identities = 13/41 (31%), Positives = 24/41 (57%), Gaps = 1/41 (2%)
Query: 198 LNDSRLNALLCYEEKVMQALAKKYPSFLQDLHDIKKYRNKD 238
L+ + ++ +EE++ L KYP L+++H KK +KD
Sbjct: 446 LDSVSVKKVVDFEEQLHPFLEAKYPQVLEEIH-TKKVLDKD 485
>ref|NP_223614.1| putative [Helicobacter pylori J99]
Length = 230
Score = 25.8 bits (55), Expect = 2.5
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 321 KYYSKKEEREKE-----------KMILNF------CKIFEIILFEAIQKQPKPDFKNKDE 363
KY +K E+ E + KM L F C + + E IQ++ + ++
Sbjct: 28 KYKAKNEDEEDDEANYREFEKIKKMALYFRDYCMFCLDWYELSQEKIQEEYRDCIDYDNK 87
Query: 364 LLGDYPNLKNLDSLREVRED 383
LL + +L+NL +LRE++E+
Sbjct: 88 LLQLHYSLENLQTLRELKEE 107
>ref|NP_223094.1| HOMOSERINE KINASE [Helicobacter pylori J99]
Length = 293
Score = 25.8 bits (55), Expect = 2.5
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
Query: 207 LCYEE---KVMQALAKKYPSF 224
+CYEE K+ Q L+KK+P F
Sbjct: 256 MCYEEDAPKLKQVLSKKFPKF 276
>ref|NP_223486.1| INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 481
Score = 25.4 bits (54), Expect = 3.3
Identities = 18/72 (25%), Positives = 34/72 (47%)
Query: 292 EIDDRSQLSNLNAPKPLFECFVGVNLAKAKYYSKKEEREKEKMILNFCKIFEIILFEAIQ 351
E D ++ ++ PL VG++L +A K + EK ++ + +I + IQ
Sbjct: 141 ETDLSKKVGDVMTKMPLVTAHVGISLDEASDLMHKHKIEKLPIVDKDNVLKGLITIKDIQ 200
Query: 352 KQPKPDFKNKDE 363
K+ + NKD+
Sbjct: 201 KRIEYPEANKDD 212
>ref|NP_223286.1| AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 375
Score = 25.4 bits (54), Expect = 3.3
Identities = 13/32 (40%), Positives = 16/32 (49%)
Query: 359 KNKDELLGDYPNLKNLDSLREVREDFLKRAFK 390
K+ L YP +SLRE + F KR FK
Sbjct: 45 KSHTHSLNIYPKSAFEESLREAQRGFFKRRFK 76
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 25.4 bits (54), Expect = 3.3
Identities = 20/81 (24%), Positives = 36/81 (43%), Gaps = 9/81 (11%)
Query: 282 QEEKHYKKNAEIDDRSQLSNLNAPKPLFECFVGVNLAKAKYYSKKEEREKEKMILNFCKI 341
+E+ H+ EID + + + P P+F + + + +KKE +E+ K
Sbjct: 179 EEDSHFASRWEIDSVVKKYSEHIPFPIFLTYTDTKF-EGEGDNKKEVKEE--------KC 229
Query: 342 FEIILFEAIQKQPKPDFKNKD 362
+I A+ K K + K KD
Sbjct: 230 DQINQASALWKMNKSELKEKD 250
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 25.4 bits (54), Expect = 3.3
Identities = 15/43 (34%), Positives = 21/43 (47%), Gaps = 3/43 (6%)
Query: 357 DFKNKDELLGDYPN---LKNLDSLREVREDFLKRAFKNDEASL 396
DFKNK L D PN +K +D L+ + +F +D L
Sbjct: 810 DFKNKIGALADKPNEKVIKAIDELKSYENYEIPASFVDDNPYL 852
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 25.0 bits (53), Expect = 4.3
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 211 EKVMQALAKKYPSFLQDLHDIKKYRNKDKHGEKPQDGSSLTRVELERYRD 260
EK ++L + S LH KK + H K + TR+ ++++D
Sbjct: 135 EKFSKSLESEKESIQNSLHQWKKQLAETNHLNKEYNTLDKTRLNAQKFQD 184
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 25.0 bits (53), Expect = 4.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 374 LDSLREVREDFLKRAFKNDE 393
+D L+E+ EDFL AF+ +E
Sbjct: 1 MDDLQEIMEDFLIEAFEMNE 20
>ref|NP_222733.1| putative [Helicobacter pylori J99]
Length = 350
Score = 25.0 bits (53), Expect = 4.3
Identities = 34/137 (24%), Positives = 58/137 (41%), Gaps = 27/137 (19%)
Query: 357 DFKNKDELLGDYPNLKNLDSLREVR------------EDFLKRAFKNDEAS--LGAYVLV 402
DF E+LG P + ++L +VR + L R + E L +L
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVREVGEEARFDLILDRTQASGEKPQFLDELLLR 168
Query: 403 LLSCKYFESVFEKVQEWLDFIARLIALRGHVHKITKELERLEEEDLEKLEKQA------- 455
+S K E F + + W+D +L+ + G ++L+ +++ L+ EK
Sbjct: 169 PMSAKLLEPTFMEKKGWVD-REKLLDVSGRGR--ARQLQMIKDYGLKYYEKPGGGCLLTD 225
Query: 456 LEYFNKIANKIYLKEKR 472
++ NKI N LKE R
Sbjct: 226 IQVSNKIKN---LKEYR 239
>ref|NP_223872.1| putative [Helicobacter pylori J99]
Length = 153
Score = 24.6 bits (52), Expect = 5.6
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 397 GAYVLVLLSCKYFESVFEKVQEWLDFIARLIALRG-------HVHKITKELERLEEEDLE 449
G VL L+S + +E+ F + +D + +A + + K +KE+E ++ +
Sbjct: 59 GFLVLELMSDREYEA-FLRATAGMDESQKRLAAQSLYSLTDFYNGKFSKEVENAPKQPVN 117
Query: 450 KLEKQALEYFNKIANKIYLK 469
L K+A + FN + +L+
Sbjct: 118 GLHKKAFQTFNATNHNAFLQ 137
>ref|NP_223695.1| PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN [Helicobacter pylori J99]
Length = 328
Score = 24.6 bits (52), Expect = 5.6
Identities = 16/42 (38%), Positives = 21/42 (49%)
Query: 262 IYFLVENLLKNPLIKERENAQEEKHYKKNAEIDDRSQLSNLN 303
++ L+E L K KE E A+ KK D +QL NLN
Sbjct: 1 MHTLIERLEKVTNSKELEEARLNALGKKGVFADKFNQLKNLN 42
>ref|NP_223516.1| putative [Helicobacter pylori J99]
Length = 218
Score = 24.6 bits (52), Expect = 5.6
Identities = 38/177 (21%), Positives = 71/177 (39%), Gaps = 8/177 (4%)
Query: 230 DIKKYRNKDKHGEKPQDGSSLTRVELERYRDGIYFLVENLLKNPLIKERENAQEEKHYKK 289
++++ RN+ K EK +G+ +RY+ + F+V + + ++ + E+ ++
Sbjct: 6 NLEQVRNEFKSDEKLLEGAFRLEKFFKRYKWVLLFIVVAFIAYLGDTKLQDYKHEQTRER 65
Query: 290 NAEIDDR--SQLSNLNAPKPLFECFVGVNLAKAKYYSKKEEREKEKMILNFCKIFEIILF 347
+I + +N+ K L E V L +++ ER + I+
Sbjct: 66 ITQIYNEVLESPNNIALQKRLKE--VAPELYDLYQFARASERNDANEFKRLSQSSNEIV- 122
Query: 348 EAIQKQPKPDFKNKDELLGDYPNLKNLDSLREVR---EDFLKRAFKNDEASLGAYVL 401
+A K LL P LK + +L+EV E+ K A K SL L
Sbjct: 123 KAFAKYSYASLSRDKNLLEKSPILKEMSALQEVNLLYEENSKDAIKKAHQSLSTIPL 179
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 24.6 bits (52), Expect = 5.6
Identities = 10/41 (24%), Positives = 25/41 (60%)
Query: 432 HVHKITKELERLEEEDLEKLEKQALEYFNKIANKIYLKEKR 472
H HK K++E++EE+ + + +K+ + + + ++EK+
Sbjct: 130 HKHKALKKVEKVEEKKVVEEKKEEKKVVEQKVEQKKIEEKK 170
>ref|NP_223122.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 298
Score = 24.6 bits (52), Expect = 5.6
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 63 YLHAKAFDDSKEIRVECKNHPIEKMAEKLEETNPEWFEKWREKQYTQT 110
Y H + + K + +EC N P+ ++ + + +EK + ++ T
Sbjct: 222 YTHKEPLEFPKIMSIECGNRPLSLFSDNTTFLSIQEYEKEAIRHFSST 269
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 24.6 bits (52), Expect = 5.6
Identities = 17/51 (33%), Positives = 24/51 (46%), Gaps = 11/51 (21%)
Query: 410 ESVFEKVQEWLDFIARLIALRGHVHKITKELERLEEEDLEKLEKQALEYFN 460
E F KV E+L+ + +L E +LEE D E+LE + E N
Sbjct: 509 EEAFLKVAEFLEKVEKL-----------HEKNKLEELDFEELENLSAEIDN 548
>ref|NP_222760.1| GDP-D-mannose dehydratase [Helicobacter pylori J99]
Length = 381
Score = 24.6 bits (52), Expect = 5.6
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 438 KELERLEEEDLEKLEKQALEYFNKIANK-IYLKE 470
KEL + E DL++L K LEY K K +YL++
Sbjct: 338 KELGWVREYDLKELVKDMLEYDLKECQKNLYLQD 371
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 24.3 bits (51), Expect = 7.3
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 86 KMAEKLEETNPEWFEKWREK-----------------QYTQTGES-KPSKRIKVFKNFTA 127
K+ +K+E+TN E+F K + K QY Q ES KP + + FK
Sbjct: 214 KVHQKMEQTNKEYFLKEQLKQIQKELGTDKQRDEDLNQYYQKLESIKPFLKEEAFKEIKK 273
Query: 128 FDDRLYTIECNLKNLDTHQKKFE 150
DRL + + T Q E
Sbjct: 274 QIDRLSRTHADSSDSATLQNYVE 296
>ref|NP_223875.1| putative [Helicobacter pylori J99]
Length = 183
Score = 24.3 bits (51), Expect = 7.3
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 19/100 (19%)
Query: 157 DIYEQIFDETPSLKGRDLETY---KAQDLSKKFMHLGFEQISKDLNDSRLNALLCYE--- 210
++ E+ DE ++ + + + K Q K+ HL +E+ DL+ LN +L +
Sbjct: 58 ELLEENTDEIEFMRMDERQLFWMIKRQIAQKEGFHLFWEERCSDLSHQILNKILDEDLIM 117
Query: 211 ------------EKVMQALAKKYPSFLQDLHD-IKKYRNK 237
K + +K Y S ++H+ IK Y+ K
Sbjct: 118 FSVSENLIRNLIYKSIDTYSKAYESIENEVHEKIKHYKRK 157
>ref|NP_223442.1| putative [Helicobacter pylori J99]
Length = 410
Score = 24.3 bits (51), Expect = 7.3
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 211 EKVMQALAKKYPSFLQDLHDIKKYRNKDKHGEKPQDGSSLTRVELERYR---DGIYFLVE 267
E+V+QAL KK+P+ L + + K H +G + V+ + R + + ++
Sbjct: 79 EEVVQALEKKFPNLLFSPYLQTQSPIKSAHS---MNGGVVFGVDFSKERHINEVLNDALK 135
Query: 268 NLLKNPLIKEREN--AQEEKHYKKNAEIDDRSQL 299
N+ +N L K N + Y N +++ ++ L
Sbjct: 136 NINENDLFKNPFNLIVGKSLRYSLNLDLNQKADL 169
>ref|NP_223411.1| putative [Helicobacter pylori J99]
Length = 48
Score = 24.3 bits (51), Expect = 7.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 439 ELERLEEEDLEKLEKQALEY 458
ELE EEE+LE E++ EY
Sbjct: 7 ELEDFEEEELEGFEEEDEEY 26
>ref|NP_223051.1| putative [Helicobacter pylori J99]
Length = 86
Score = 24.3 bits (51), Expect = 7.3
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 258 YRDGIYFLVENLLKNPLIKE--RENAQEEKHYKKNAEIDDR 296
YRDG + V NL N L + + + E + KKN + R
Sbjct: 28 YRDGTNYSVSNLYGNTLSQTSLKHKSHNELNNKKNKHANTR 68
>ref|NP_223009.1| putative [Helicobacter pylori J99]
Length = 331
Score = 24.3 bits (51), Expect = 7.3
Identities = 18/55 (32%), Positives = 24/55 (42%), Gaps = 4/55 (7%)
Query: 69 FDDSKEIRVECKNHPIEKMAEKLEETNPEWFEKWREKQYTQTGESKPSKRIKVFK 123
F D K I + K H + +KL +T + K YT TG +P K FK
Sbjct: 27 FRDFKSIDLPQKLH----LDKKLSQTIQPCAQLNASKHYTATGVREPDACTKSFK 77
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 23.9 bits (50), Expect = 9.5
Identities = 48/234 (20%), Positives = 90/234 (37%), Gaps = 55/234 (23%)
Query: 126 TAFDDRLYTIECNLKNLDTHQKKFEICGALYDIYEQIFDETPSLKG------------RD 173
+AFD + + LK L + K F L I+ Q+ T S +G +D
Sbjct: 20 SAFDLQSGATKKELKQLQVNSKNFS--NILTKIHSQVEANTLSQEGLRSVYEGQANKIKD 77
Query: 174 L--------ETYKAQDLSKKFMHLGFEQISKDLNDSR---------LNALLCYEEKVMQA 216
L E+ +A S++ +Q S+ L D R + L +++ +
Sbjct: 78 LNNAILSQEESLRALKASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSEL 137
Query: 217 LAKKYPSFLQDLHDIKK-YRNKDKHGEKPQDGSSLTRVELERYRDGIYFLVENLLKNPLI 275
L K + + I+K + +++ EKP S+ KNP +
Sbjct: 138 LTKLSQDLVSQIALIQKALKEQEEKAEKPLKSSTPAN------------------KNPPL 179
Query: 276 KERENAQEEKHYKKNAEIDDRSQLSNLNAPKPLFECFVGVNLAKAKYYSKKEER 329
K +EK ++ A+++ LS K +F+ ++ + K Y++ +ER
Sbjct: 180 KAETPKNQEKKTQEKAKVEFDKDLSK---QKEIFQ--EALSFFRNKSYAEAKER 228
>ref|NP_223662.1| putative [Helicobacter pylori J99]
Length = 668
Score = 23.9 bits (50), Expect = 9.5
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 2 EFFADSSFKAESLYYPKENNKSLNVNEIIIRKTIETSIKYHKQDT 46
+F A + K YY NK+ N+ + + + +++ +K D+
Sbjct: 378 DFEAGKAIKQTQYYYVDRENKTQNIGGCVDLQGAQYAMQLYKDDS 422
>ref|NP_223514.1| putative [Helicobacter pylori J99]
Length = 223
Score = 23.9 bits (50), Expect = 9.5
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 359 KNKDELLGDYPNLKNLDSLREVREDFLKRAFKNDEASLGAYVLVLLSCKYFESVFEKVQE 418
+N+ LL YPN KN+ + D++ A L V++ ++ + V+E
Sbjct: 56 ENEKALLNCYPNAKNIAGFFHLETDYIGLGIDRQMACLAVVNGVIVDAGSAITI-DLVKE 114
Query: 419 WLDFIARLI-ALRGHVHKITKELERLEE-----EDLEKLEKQALEYFN 460
++ L +VH K + LE+ + LE L K + N
Sbjct: 115 GKHLGGCILPGLAQYVHAYKKSAKILEQPFKALDSLEVLPKNTRDAVN 162
>ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 404
Score = 23.9 bits (50), Expect = 9.5
Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 18/129 (13%)
Query: 172 RDLETYKAQDLSKKFMHLGFEQISKDLNDSRLNAL-------LCYEEKVMQALAKKYPSF 224
+D+ ++ +QD + + L + +S DL +++ + Y +A + Y
Sbjct: 25 KDMGSHPSQDHLNELLELFKQDLSIDLKREIASSIGRQLDDDIIYNFLKQEAFKEHYMEV 84
Query: 225 LQDLHDIKKYRNKDKHGEKPQDG-----SSLTRVELERYRDGIYF------LVENLLKNP 273
+ Y++KD K D + ++++Y D + ++EN++K P
Sbjct: 85 IYQFLRTALYKSKDMRFAKLCDDLLQHYQNENMQKMKQYYDYRHTKKPPLKIIENIIKKP 144
Query: 274 LIKERENAQ 282
+ +NAQ
Sbjct: 145 SLLVGDNAQ 153
>ref|NP_223270.1| putative [Helicobacter pylori J99]
Length = 477
Score = 23.9 bits (50), Expect = 9.5
Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 412 VFEKVQEWLDFIARLIALRGHVHKITKELERLEE---------EDLEKLEKQ 454
V ++ E+ + +AR+IAL+ + +I +++R+ + +DL+ L+ Q
Sbjct: 192 VVQQYYEYFNNLARMIALQKKLEQIQTDIKRVTKLYDKGLTTIDDLQSLKAQ 243
>ref|NP_223188.1| cag island protein [Helicobacter pylori J99]
Length = 219
Score = 23.9 bits (50), Expect = 9.5
Identities = 9/24 (37%), Positives = 18/24 (74%)
Query: 438 KELERLEEEDLEKLEKQALEYFNK 461
K+LE+ ++E L K+EKQ +++ +
Sbjct: 114 KDLEKEKKELLNKIEKQKIKHLER 137
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.135 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 565,608
Number of Sequences: 1491
Number of extensions: 29678
Number of successful extensions: 173
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 51
length of query: 472
length of database: 494,079
effective HSP length: 81
effective length of query: 391
effective length of database: 373,308
effective search space: 145963428
effective search space used: 145963428
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)