BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645078|ref|NP_207248.1| hypothetical protein
[Helicobacter pylori 26695]
(44 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223610.1| putative [Helicobacter pylori J99] 23 1.2
ref|NP_223322.1| putative [Helicobacter pylori J99] 22 2.1
ref|NP_223183.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 22 2.1
ref|NP_224020.1| putative [Helicobacter pylori J99] 22 2.8
ref|NP_223765.1| putative [Helicobacter pylori J99] 22 2.8
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 22 2.8
ref|NP_223830.1| putative [Helicobacter pylori J99] 22 3.6
ref|NP_223415.1| putative [Helicobacter pylori J99] 22 3.6
ref|NP_222962.1| putative [Helicobacter pylori J99] 22 3.6
ref|NP_222772.1| putative [Helicobacter pylori J99] 22 3.6
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 22 3.6
ref|NP_223787.1| putative [Helicobacter pylori J99] 21 6.2
ref|NP_223642.1| putative [Helicobacter pylori J99] 21 6.2
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 20 8.0
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 23.1 bits (48), Expect = 1.2
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 4 NEELELRARETELDKRVAELDKREKQLRKDIDAFKQEKK 42
N L+ + LDK + L+ ++ RKD+D +K+
Sbjct: 2 NTHLKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKE 40
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 22.3 bits (46), Expect = 2.1
Identities = 12/36 (33%), Positives = 18/36 (49%)
Query: 4 NEELELRARETELDKRVAELDKREKQLRKDIDAFKQ 39
N+E+E + DK E+ +Q D+D FKQ
Sbjct: 200 NQEIERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQ 235
>ref|NP_223183.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 443
Score = 22.3 bits (46), Expect = 2.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 6 ELELRARETELDKRVAELDKREKQLRKD 33
+++ R + ELD R E++ R+K + D
Sbjct: 159 KMQQRIAQGELDSREIEIEVRKKSIEID 186
>ref|NP_224020.1| putative [Helicobacter pylori J99]
Length = 201
Score = 21.9 bits (45), Expect = 2.8
Identities = 10/29 (34%), Positives = 16/29 (54%)
Query: 13 ETELDKRVAELDKREKQLRKDIDAFKQEK 41
ET+++ + + KR Q D D K+EK
Sbjct: 81 ETQVEHILPQTPKRGSQWNADFDKEKREK 109
>ref|NP_223765.1| putative [Helicobacter pylori J99]
Length = 144
Score = 21.9 bits (45), Expect = 2.8
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 12 RETELDKRVAELDKREKQLRKDIDAFKQEK 41
R+ +L K AE+ +R Q + I AF+QEK
Sbjct: 27 RDIKLAKH-AEIFERNHQKQLAIQAFEQEK 55
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 21.9 bits (45), Expect = 2.8
Identities = 9/17 (52%), Positives = 11/17 (63%)
Query: 6 ELELRARETELDKRVAE 22
EL + ETELDK + E
Sbjct: 369 ELIIEGEETELDKSIVE 385
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 21.6 bits (44), Expect = 3.6
Identities = 10/36 (27%), Positives = 21/36 (57%)
Query: 6 ELELRARETELDKRVAELDKREKQLRKDIDAFKQEK 41
ELE ++TE +K+ E +K++ + K +++K
Sbjct: 123 ELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQK 158
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 21.6 bits (44), Expect = 3.6
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 9 LRARETELDKRVAELDKREKQLRKDIDAFKQEK 41
+R + L+K EL+K + L ++ + FK+++
Sbjct: 104 VRDEKRYLEKEKKELEKERQILEQERENFKKQR 136
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 21.6 bits (44), Expect = 3.6
Identities = 12/31 (38%), Positives = 19/31 (60%), Gaps = 4/31 (12%)
Query: 16 LDKRVAELDKREKQLRKDIDAFK----QEKK 42
L+K+ E+D++ K L +AFK +EKK
Sbjct: 69 LNKKEKEIDEKLKNLAAKEEAFKTLQTEEKK 99
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 21.6 bits (44), Expect = 3.6
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 4 NEELELRARETELDKRVAELDKREKQLRKDIDAFKQEKK 42
NE +L+ +T+L ++ L + +L I EK+
Sbjct: 163 NENTKLKTDKTDLTEKNQRLTTEKTELNNKITGLATEKE 201
Score = 20.8 bits (42), Expect = 6.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 9 LRARETELDKRVAELDKREKQLRKDIDAFKQEKK 42
L +TEL K+V EL ++ L + + +EK+
Sbjct: 63 LTKEKTELQKQVNELKNSKQVLENEKADWLREKE 96
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 21.6 bits (44), Expect = 3.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 17 DKRVAELDKREKQLRKDIDAFKQEK 41
D + LD+ E QLR+ I K EK
Sbjct: 113 DTKAMVLDQEESQLRERILKRKNEK 137
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 20.8 bits (42), Expect = 6.2
Identities = 6/19 (31%), Positives = 15/19 (78%)
Query: 25 KREKQLRKDIDAFKQEKKF 43
K E++ ++ ++ FK+++KF
Sbjct: 169 KNEEEFKEILEGFKRKEKF 187
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 20.8 bits (42), Expect = 6.2
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 2 SGNEELELRARETELDKRVAELDKREKQLRKDI 34
S + + L +ET +++ EL+ +EK+ ++ +
Sbjct: 147 SQSNPIPLDKKETSKEEKEEELESKEKEPKETL 179
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 20.4 bits (41), Expect = 8.0
Identities = 10/34 (29%), Positives = 17/34 (49%)
Query: 9 LRARETELDKRVAELDKREKQLRKDIDAFKQEKK 42
L A+E +V + K K+ +K+ K+E K
Sbjct: 20 LYAKEISEADKVIKATKETKETKKEAKRLKKEAK 53
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.312 0.132 0.330
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,875
Number of Sequences: 1491
Number of extensions: 1306
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 44
length of database: 494,079
effective HSP length: 20
effective length of query: 24
effective length of database: 464,259
effective search space: 11142216
effective search space used: 11142216
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 41 (20.4 bits)