BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645079|ref|NP_207249.1| hypothetical protein
[Helicobacter pylori 26695]
(94 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223788.1| putative [Helicobacter pylori J99] 36 1e-04
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 36 2e-04
ref|NP_223405.1| putative [Helicobacter pylori J99] 35 3e-04
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 33 8e-04
ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter p... 32 0.002
ref|NP_222772.1| putative [Helicobacter pylori J99] 30 0.007
ref|NP_222774.1| putative [Helicobacter pylori J99] 30 0.009
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 29 0.015
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 28 0.032
ref|NP_223787.1| putative [Helicobacter pylori J99] 28 0.042
ref|NP_223731.1| putative [Helicobacter pylori J99] 27 0.055
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 27 0.055
ref|NP_222885.1| putative restriction enzyme [Helicobacter ... 27 0.055
ref|NP_223830.1| putative [Helicobacter pylori J99] 27 0.072
ref|NP_223770.1| putative [Helicobacter pylori J99] 27 0.072
ref|NP_223025.1| putative [Helicobacter pylori J99] 27 0.094
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 26 0.12
ref|NP_223645.1| putative [Helicobacter pylori J99] 26 0.12
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 26 0.12
ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter... 25 0.27
ref|NP_224153.1| putative [Helicobacter pylori J99] 25 0.27
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 25 0.27
ref|NP_223387.1| putative [Helicobacter pylori J99] 25 0.27
ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99] 25 0.36
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 25 0.36
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 25 0.36
ref|NP_223415.1| putative [Helicobacter pylori J99] 24 0.47
ref|NP_223281.1| putative lipopolysaccharide biosynthesis p... 24 0.61
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 23 0.80
ref|NP_223255.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [... 23 1.0
ref|NP_222846.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobact... 22 1.8
ref|NP_224131.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_223639.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_223664.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223326.1| CHORISMATE SYNTHASE [Helicobacter pylori J99] 22 3.0
ref|NP_223181.1| 50S RIBOSOMAL PROTEIN L9 [Helicobacter pyl... 22 3.0
ref|NP_223119.1| putative co-chaperone with DnaK [Helicobac... 22 3.0
ref|NP_222890.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99] 21 4.0
ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) ... 21 4.0
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 21 4.0
ref|NP_223137.1| putative [Helicobacter pylori J99] 21 4.0
ref|NP_222771.1| putative [Helicobacter pylori J99] 21 4.0
ref|NP_224136.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_222956.1| ABC transporter, ATP-binding protein [Heli... 21 5.2
ref|NP_222930.1| DNA REPAIR PROTEIN [Helicobacter pylori J99] 21 5.2
ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter p... 20 6.8
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 20 6.8
ref|NP_223718.1| GLUTAMATE DEHYDROGENASE [Helicobacter pylo... 20 6.8
ref|NP_222831.1| putative [Helicobacter pylori J99] 20 6.8
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 20 8.8
ref|NP_224147.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Heli... 20 8.8
ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylor... 20 8.8
ref|NP_223677.1| putative [Helicobacter pylori J99] 20 8.8
ref|NP_223234.1| putative [Helicobacter pylori J99] 20 8.8
ref|NP_223197.1| cag island protein [Helicobacter pylori J99] 20 8.8
ref|NP_223014.1| putative [Helicobacter pylori J99] 20 8.8
ref|NP_222861.1| putative [Helicobacter pylori J99] 20 8.8
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 36.2 bits (82), Expect = 1e-04
Identities = 29/114 (25%), Positives = 55/114 (47%), Gaps = 24/114 (21%)
Query: 3 LETISKQLQEQQESLNKDYRKK--LESIKERSDRLESDLKTQFDAQL------------- 47
LE + K+L E+ + + + ++K+ +E +K ++ ES LK + + +L
Sbjct: 114 LELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLELEREKIEK 173
Query: 48 ---EKWEQNFKGYEQQLTDILNE------REQLDLDQQRLNAQKQALENHMKQR 92
EK E FK E+QL + NE + +L Q + Q+ A+E ++Q+
Sbjct: 174 ALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAIEEFLRQK 227
Score = 22.7 bits (47), Expect = 1.4
Identities = 10/49 (20%), Positives = 25/49 (50%)
Query: 18 NKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLTDILN 66
+ ++ ++ +I E ++L +DL+++ A W+ K E+ +N
Sbjct: 355 SSEFSMQVNAIIEGFEQLRADLESEKRAMARIWKSREKQIEKVFESTIN 403
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 35.8 bits (81), Expect = 2e-04
Identities = 29/97 (29%), Positives = 55/97 (55%), Gaps = 11/97 (11%)
Query: 8 KQLQEQQESLNKDYRKKLESIKERSDRLE--SDLKTQFDAQLEKW------EQNFKGYEQ 59
K+L+EQ+++L K+ K ++ K + D+ E + + + A LE QN +
Sbjct: 139 KELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLSN-NK 197
Query: 60 QLTDILNEREQLDLDQ-QRL-NAQKQALENHMKQREE 94
L++++ ++ + +LDQ +RL + Q+QA N +KQ EE
Sbjct: 198 NLSELIKQQRENELDQMERLEDMQEQAQANALKQIEE 234
Score = 20.4 bits (41), Expect = 6.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 74 DQQRLNAQKQALENHMKQREE 94
D + L QK+ALE + +E+
Sbjct: 137 DPKELEEQKKALEKEKEAKEQ 157
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 35.0 bits (79), Expect = 3e-04
Identities = 28/94 (29%), Positives = 50/94 (52%), Gaps = 11/94 (11%)
Query: 5 TISK--QLQEQQESLN------KDYRKKLESIKERSDRLESDLK---TQFDAQLEKWEQN 53
T+SK QL ++++ LN K +K+ S+ + ES LK T+ + + +++
Sbjct: 149 TLSKMSQLSQEEKKLNVQALEVKSSIQKISSVIDEQKTRESTLKSLQTEQNKLILSMQKD 208
Query: 54 FKGYEQQLTDILNEREQLDLDQQRLNAQKQALEN 87
+ Y Q+L+ + ER+ L+ +RLN KQ EN
Sbjct: 209 YAIYNQRLSLLEKERQNLNALLKRLNIIKQNREN 242
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 33.5 bits (75), Expect = 8e-04
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 20/103 (19%)
Query: 3 LETISKQL---QEQQESLNKDYRK--------KLESIKERSDRLESDLKTQFDAQLEKWE 51
L+ I K+L +++ E LN+ Y+K K E+ KE +++ +T D+
Sbjct: 232 LKQIQKELGTDKQRDEDLNQYYQKLESIKPFLKEEAFKEIKKQIDRLSRTHADSSDSATL 291
Query: 52 QN---------FKGYEQQLTDILNEREQLDLDQQRLNAQKQAL 85
QN F YE++ DI + +EQLD D L K+ +
Sbjct: 292 QNYVETMLDVPFGQYEKKALDIKHVKEQLDNDHYSLKRPKERI 334
>ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter pylori J99]
Length = 171
Score = 32.3 bits (72), Expect = 0.002
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 10/95 (10%)
Query: 6 ISKQLQEQQESL--NKDYRKK----LESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQ 59
ISK+L+E Q L +K+++KK LE KE+++ + SD + +K+E K +
Sbjct: 62 ISKRLEEIQAQLKVSKEHKKKLLKELEQAKEKAELIISDANKEAYTITQKYELQTKMDVE 121
Query: 60 QLTDILNEREQLDLDQQRLNAQKQALENHMKQREE 94
L I N + +DL+ +++ +++ +E+ K E
Sbjct: 122 NL--IKNSKALMDLEVKKI--KRELVESVFKDLRE 152
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 30.4 bits (67), Expect = 0.007
Identities = 22/90 (24%), Positives = 46/90 (50%), Gaps = 2/90 (2%)
Query: 4 ETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLTD 63
E ++K+ E Q+ +N+ K E++D + K + D + + E+N + + T+
Sbjct: 131 ENLTKEKTESQKQVNELKNSKQVLENEKADLTNENTKLKTD-KTDLTEKNQR-LTTEKTE 188
Query: 64 ILNEREQLDLDQQRLNAQKQALENHMKQRE 93
+ N+ L +++RL A K+ L +QR+
Sbjct: 189 LNNKITGLATEKERLAADKENLTKESRQRK 218
Score = 30.0 bits (66), Expect = 0.009
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 7 SKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLTDILN 66
+K L ++E L ++ K L + KE + KT+ Q+ + + + + E + D L
Sbjct: 39 NKALTTEKERLERE-NKNLTADKENLTKE----KTELQKQVNELKNSKQVLENEKADWLR 93
Query: 67 EREQLDLDQQRLNAQKQALENHMK 90
E+E L D++ L +K L K
Sbjct: 94 EKENLTKDRENLTKEKTELTEKNK 117
Score = 28.9 bits (63), Expect = 0.019
Identities = 23/91 (25%), Positives = 41/91 (44%), Gaps = 9/91 (9%)
Query: 4 ETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLTD 63
E ++K+ E E NK + E + + L + KT+ Q+ + + + + E + D
Sbjct: 103 ENLTKEKTELTEK-NKVLTTEKERLATEKENLTKE-KTESQKQVNELKNSKQVLENEKAD 160
Query: 64 ILNEREQLDLDQ-------QRLNAQKQALEN 87
+ NE +L D+ QRL +K L N
Sbjct: 161 LTNENTKLKTDKTDLTEKNQRLTTEKTELNN 191
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 30.0 bits (66), Expect = 0.009
Identities = 26/84 (30%), Positives = 39/84 (45%), Gaps = 7/84 (8%)
Query: 7 SKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQ--LEKWEQNFKGYEQQLTDI 64
+K L + + LN ++ ++ D LE + DA LEK N + Q+LTD
Sbjct: 162 NKALTTENDKLNH----QVTALTNERDSLEQERARLQDAHGFLEKRCTNLEKENQRLTDK 217
Query: 65 LNEREQLDLDQQRLNAQ-KQALEN 87
L + E + N Q +QALEN
Sbjct: 218 LKQLESAQKSLENTNNQLRQALEN 241
Score = 24.6 bits (52), Expect = 0.36
Identities = 22/96 (22%), Positives = 44/96 (44%), Gaps = 4/96 (4%)
Query: 2 ILETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLK---TQFDAQLEKWEQNFKGYE 58
IL + +L ++ L ++ +++L + KER R ++L T+ + +
Sbjct: 115 ILAKENTRLLAARDRLTEE-KRELTTEKERLKRENTELTHKITELTKENKALTTENDKLN 173
Query: 59 QQLTDILNEREQLDLDQQRLNAQKQALENHMKQREE 94
Q+T + NER+ L+ ++ RL LE E+
Sbjct: 174 HQVTALTNERDSLEQERARLQDAHGFLEKRCTNLEK 209
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 29.3 bits (64), Expect = 0.015
Identities = 20/88 (22%), Positives = 45/88 (50%), Gaps = 2/88 (2%)
Query: 2 ILETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQ--LEKWEQNFKGYEQ 59
+L +++L E+ + K Y + K ++R E + +A+ LE+ +++ K Y+
Sbjct: 857 LLTPEARKLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKD 916
Query: 60 QLTDILNEREQLDLDQQRLNAQKQALEN 87
++ NE+E+ + ++ K+ LEN
Sbjct: 917 CVSRARNEKEKQECEKLLTPEAKKLLEN 944
Score = 27.3 bits (59), Expect = 0.055
Identities = 18/92 (19%), Positives = 47/92 (50%), Gaps = 2/92 (2%)
Query: 2 ILETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQ--LEKWEQNFKGYEQ 59
+L +++L E+ + K Y + K +++ E + +A+ LE+ +++ K Y+
Sbjct: 1148 LLTPEARKLLEESKKSVKAYLDCVSKAKNEAEKKECEKLLTPEARKLLEEAKESVKAYKD 1207
Query: 60 QLTDILNEREQLDLDQQRLNAQKQALENHMKQ 91
++ NE+E+ + ++ ++ LE +K+
Sbjct: 1208 CVSRARNEKEKQECEKLLTPEARKLLEQEVKK 1239
Score = 26.9 bits (58), Expect = 0.072
Identities = 19/91 (20%), Positives = 45/91 (48%), Gaps = 2/91 (2%)
Query: 2 ILETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQ--LEKWEQNFKGYEQ 59
+L +++L E+ + K Y + K ++R E + +A+ LE+ +++ K Y+
Sbjct: 781 LLTPEARKLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKD 840
Query: 60 QLTDILNEREQLDLDQQRLNAQKQALENHMK 90
++ NE+E+ + ++ ++ LE K
Sbjct: 841 CVSRARNEKEKQECEKLLTPEARKLLEESKK 871
Score = 25.8 bits (55), Expect = 0.16
Identities = 21/88 (23%), Positives = 45/88 (50%), Gaps = 8/88 (9%)
Query: 3 LETISKQLQEQQESLNKDYRKKLESIKERSDRLES---DLKTQFDAQLEKWEQNFKGYEQ 59
L+ +SK+ E+ + D K ++ +ER + L++ DL+ + A + + K Y+
Sbjct: 457 LKGLSKEAIERLKQQALDCLKNAKTDEERKECLKNIPQDLQKELLADM-----SVKAYKD 511
Query: 60 QLTDILNEREQLDLDQQRLNAQKQALEN 87
++ NE+E+ + ++ K+ LEN
Sbjct: 512 CVSRARNEKEKQECEKLLTPEAKKLLEN 539
Score = 24.3 bits (51), Expect = 0.47
Identities = 20/94 (21%), Positives = 50/94 (52%), Gaps = 6/94 (6%)
Query: 3 LETISKQLQEQ---QESLNKDYRKKLESIKERSDRLESDLKTQFDAQ--LEKWEQNFKGY 57
++ + K LQ++ +ES+ + Y + K ++R E + +A+ LE+ +++ K Y
Sbjct: 963 VKDLPKDLQKKVLAKESV-RVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAY 1021
Query: 58 EQQLTDILNEREQLDLDQQRLNAQKQALENHMKQ 91
+ ++ NE+E+ + ++ ++ LE +K+
Sbjct: 1022 KDCVSRARNEKEKQECEKLLTPEARKLLEQEVKK 1055
Score = 22.7 bits (47), Expect = 1.4
Identities = 21/93 (22%), Positives = 47/93 (49%), Gaps = 6/93 (6%)
Query: 3 LETISKQLQEQ---QESLNKDYRKKLESIKERSDRLESDLKTQFDAQ--LEKWEQNFKGY 57
L+ + K LQ++ +ES+ + Y + K ++R E + +A+ LE+ +++ K Y
Sbjct: 704 LKDLPKDLQKKVLAKESV-RVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKKSVKAY 762
Query: 58 EQQLTDILNEREQLDLDQQRLNAQKQALENHMK 90
+ + NE+E+ + ++ ++ LE K
Sbjct: 763 KDCVLRARNEKEKQECEKLLTPEARKLLEESKK 795
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 28.1 bits (61), Expect = 0.032
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 6 ISKQLQEQQESLNKDYRKK-LESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLTDI 64
+ K+L+ + +K K LE ++ ++ L+ K + +L+ + Q +K E
Sbjct: 691 LKKELKNATDLEDKQILKTALEWLEAKNKALKMKNKAYEELELKAFHQ-YKNLE------ 743
Query: 65 LNEREQLDLDQQRLNAQKQALENHMKQR 92
+NE + L + + LN+ K ALEN +++R
Sbjct: 744 INEIKDLIIKDKWLNSLKNALENKIQKR 771
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 27.7 bits (60), Expect = 0.042
Identities = 13/58 (22%), Positives = 31/58 (53%)
Query: 8 KQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLTDIL 65
++++ ++ES+NK+ KK+++ + K + D W+ +K E++ +IL
Sbjct: 121 EKIESKKESINKENEKKIKNEASLQVLTQKKEKEEKDFTDSCWKNLYKKNEEEFKEIL 178
Score = 26.2 bits (56), Expect = 0.12
Identities = 18/90 (20%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 13 QQESLNKDYRKKLESIKERS--------DRLESDLKTQFDAQLEKWEQNFK---GYEQQL 61
Q+E++ ++++K+LES + S +++ D + D LE+ ++ K Q
Sbjct: 287 QKETITEEFKKQLESYFDTSYQESTDTIKKMKEDYTNKTDEALERLDEIIKTEQNNSQTK 346
Query: 62 TDILNEREQLDLDQQRLNAQKQALENHMKQ 91
D N + ++ + ++ A +Q + + K+
Sbjct: 347 LDTENLKRIIETLRSKIKANQQKMIDKSKE 376
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 27.3 bits (59), Expect = 0.055
Identities = 22/91 (24%), Positives = 41/91 (44%), Gaps = 17/91 (18%)
Query: 4 ETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLTD 63
E +L + +S N++ S+K L SD+ LEK+ ++ + ++ + +
Sbjct: 96 ERFKSRLDKAIDSFNQNLDNGAASLK-----LPSDIDIDDTKALEKFSKSLESEKESIQN 150
Query: 64 ILNE------------REQLDLDQQRLNAQK 82
L++ +E LD+ RLNAQK
Sbjct: 151 SLHQWKKQLAETNHLNKEYNTLDKTRLNAQK 181
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 27.3 bits (59), Expect = 0.055
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 15/69 (21%)
Query: 12 EQQESLNKDYRKKLESIKERSDRLES---------------DLKTQFDAQLEKWEQNFKG 56
+++E L KD K LES +++E+ + + DA+ + QN KG
Sbjct: 623 KKRERLEKDVAKNLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQNLKG 682
Query: 57 YEQQLTDIL 65
+++L+D L
Sbjct: 683 IKRELSDKL 691
Score = 20.0 bits (40), Expect = 8.8
Identities = 8/28 (28%), Positives = 16/28 (56%)
Query: 19 KDYRKKLESIKERSDRLESDLKTQFDAQ 46
K +K LE ++ +RLE D+ +++
Sbjct: 612 KQAQKDLEKSLKKRERLEKDVAKNLESK 639
>ref|NP_222885.1| putative restriction enzyme [Helicobacter pylori J99]
Length = 448
Score = 27.3 bits (59), Expect = 0.055
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 2 ILETISKQLQEQQE----SLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGY 57
ILE + Q E + +Y K+ + RL +K A+++K ++N Y
Sbjct: 24 ILEHFFDKANNQDEVDMSGILSNYNDKVSILLATDPRLGGGIKRIISAEVDKIKENRLDY 83
Query: 58 EQQLTDIL 65
E ++ DIL
Sbjct: 84 ELKIDDIL 91
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 26.9 bits (58), Expect = 0.072
Identities = 20/81 (24%), Positives = 40/81 (48%), Gaps = 11/81 (13%)
Query: 12 EQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLTDILNEREQL 71
EQ+E + ++K E K+++++ K + + + +K EQ E+Q T + Q+
Sbjct: 125 EQEEQKTEQEKQKTEQEKQKTEQE----KQKTEQEKQKTEQ-----EKQKTSNIETNNQI 175
Query: 72 DL--DQQRLNAQKQALENHMK 90
+ +QQ+ +KQ N K
Sbjct: 176 KVEQEQQKTEQEKQKTNNTQK 196
Score = 25.8 bits (55), Expect = 0.16
Identities = 14/66 (21%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 22 RKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLTDILNEREQLDLDQQRLNAQ 81
+K+ E+ ++R+++ +L + + +K EQ + EQ+ E+++ + ++Q+ +
Sbjct: 107 QKEAENARDRANKSGIEL----EQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQE 162
Query: 82 KQALEN 87
KQ N
Sbjct: 163 KQKTSN 168
Score = 21.2 bits (43), Expect = 4.0
Identities = 9/37 (24%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 58 EQQLTDILNEREQLDLDQQRLNAQKQALENHMKQREE 94
E+Q T+ E+++ + ++Q+ +KQ E ++ E+
Sbjct: 127 EEQKTE--QEKQKTEQEKQKTEQEKQKTEQEKQKTEQ 161
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 26.9 bits (58), Expect = 0.072
Identities = 16/60 (26%), Positives = 27/60 (44%), Gaps = 10/60 (16%)
Query: 6 ISKQLQEQQESLNKDYRK----------KLESIKERSDRLESDLKTQFDAQLEKWEQNFK 55
I K L+EQ+E K + K E+ K + + + K +FD L K ++ F+
Sbjct: 152 IQKALKEQEEKAEKPLKSSTPANKNPPLKAETPKNQEKKTQEKAKVEFDKDLSKQKEIFQ 211
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 26.6 bits (57), Expect = 0.094
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Query: 3 LETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLT 62
LE + + ++E QE+ N KK + + D++TQ + ++ K E+ + E+
Sbjct: 275 LEAMQELVKEIQENSNDQENKKETQETQENTETPQDIETQ-ELEIPKEEETQEVAEKTQV 333
Query: 63 DILNEREQLDLDQ------------QRLNAQKQALENHMKQREE 94
L + E + Q Q L AQ + L+ + ++E
Sbjct: 334 QGLEKEEIAETPQEKEIQETQDETPQELEAQDEKLQENETPKDE 377
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 26.2 bits (56), Expect = 0.12
Identities = 12/56 (21%), Positives = 29/56 (51%)
Query: 19 KDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLTDILNEREQLDLD 74
K + ++ +++ + +E+DLK ++AQ + F + Q + ++ + LD D
Sbjct: 261 KKLKNEIPTLESECEEIENDLKRYYEAQETAIFKKFPKFIQLYDNATSKIQALDFD 316
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 26.2 bits (56), Expect = 0.12
Identities = 16/55 (29%), Positives = 33/55 (59%), Gaps = 4/55 (7%)
Query: 4 ETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWE-QNFKGY 57
E K+L+EQ + + + ++KL++IK+ + S+L T F + E ++ +KG+
Sbjct: 2126 ELTHKKLKEQNKQIAEQNKEKLDAIKK---QFASNLNTLFVNEEEDYKLLEYKGF 2177
Score = 20.0 bits (40), Expect = 8.8
Identities = 9/19 (47%), Positives = 12/19 (62%)
Query: 8 KQLQEQQESLNKDYRKKLE 26
K+LQ +QE L DY L+
Sbjct: 457 KELQAKQEILKGDYYATLK 475
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 26.2 bits (56), Expect = 0.12
Identities = 21/74 (28%), Positives = 38/74 (50%), Gaps = 10/74 (13%)
Query: 2 ILETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQ-- 59
+++ + QL+ Q ES KL S+K RLE + + ++E E N K ++
Sbjct: 390 LIDEGAAQLKMQMES----EPAKLSSVKRSIQRLEMEKQA---LEMENKESNHKRMQEIL 442
Query: 60 -QLTDILNEREQLD 72
+L+D+ E+ QL+
Sbjct: 443 KELSDLKEEKIQLE 456
Score = 20.8 bits (42), Expect = 5.2
Identities = 11/24 (45%), Positives = 14/24 (57%), Gaps = 6/24 (25%)
Query: 76 QRLNAQKQALE------NHMKQRE 93
QRL +KQALE NH + +E
Sbjct: 417 QRLEMEKQALEMENKESNHKRMQE 440
>ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter pylori J99]
Length = 355
Score = 25.0 bits (53), Expect = 0.27
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 45 AQLEKWEQNFKGYEQQLTDILNEREQLDLDQQRLNAQKQALENHMKQR 92
A++EK + K + L +I +++L + L QK+A E+ +K++
Sbjct: 219 AEIEKDNEEAKRLGKPLKNIPTFGSRIELSDEVLAHQKKAFEDELKEQ 266
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 25.0 bits (53), Expect = 0.27
Identities = 17/59 (28%), Positives = 35/59 (58%), Gaps = 7/59 (11%)
Query: 36 ESDLKTQFDAQLEKWEQNFKGYEQQLTDILNEREQLDLDQQRLNAQKQALENHMKQREE 94
E DL F L+ E++F Y+ + ++ +++ Q+ +RLNAQK+ L+ +++ E+
Sbjct: 157 EEDL--DFKGLLDILEKDFLSYQHK--ELEHKKNQII---KRLNAQKERLKEKLEKLED 208
Score = 23.9 bits (50), Expect = 0.61
Identities = 10/39 (25%), Positives = 22/39 (55%)
Query: 8 KQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQ 46
K+L+ ++ + K + E +KE+ ++LE Q +A+
Sbjct: 179 KELEHKKNQIIKRLNAQKERLKEKLEKLEDPKTLQLEAK 217
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 25.0 bits (53), Expect = 0.27
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 3 LETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLT 62
LE ++Q+Q+ +++L KD L IK+ ++ + Q Q +K EQ + Q
Sbjct: 492 LENTNQQIQQDEKALEKD----LAQIKQLANS-TTGFNEQAFTQAQKQEQQDEQALQNDE 546
Query: 63 DILNEREQLDLDQQRLNAQ 81
+ N EQ L+Q NA+
Sbjct: 547 NAFN-TEQEGLEQAIANAK 564
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 25.0 bits (53), Expect = 0.27
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 2 ILETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQL 61
I TI KQ+ + + ++ ++ +D+ SDL+ +++ ++E NF+
Sbjct: 94 IKTTIEKQIDPGIKETQEHQQEARFNLDRSTDKFISDLEKSAFSKINQFEFNFR------ 147
Query: 62 TDILNEREQLDLDQQRLNAQKQALENHMKQRE 93
++ER + + N K+ N +KQR+
Sbjct: 148 -KEMHERIERGIGN---NECKEIFGNELKQRK 175
>ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99]
Length = 144
Score = 24.6 bits (52), Expect = 0.36
Identities = 25/79 (31%), Positives = 42/79 (52%), Gaps = 8/79 (10%)
Query: 3 LETISKQLQEQQ-ESLNKDYRKKLESIKERSDRLESDLKTQFDA---QLEKWEQNFKGYE 58
+ET+ K+ E++ E L + +K ES + E++L +F+A QL+ +Q K
Sbjct: 64 IETLLKEAAEKRREMLAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQILKEQL 123
Query: 59 Q-QLT---DILNEREQLDL 73
Q Q+T D LN+R + L
Sbjct: 124 QAQMTVFEDELNKRVAMGL 142
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 24.6 bits (52), Expect = 0.36
Identities = 16/67 (23%), Positives = 27/67 (39%), Gaps = 7/67 (10%)
Query: 3 LETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLT 62
+E + + E L+K R LE +D F + +Q F+ Y + L+
Sbjct: 454 IEALEDENNESTAGLDKSSRDFLEGAI-------ADYNGMFQISFDTSDQKFQSYYKDLS 506
Query: 63 DILNERE 69
+ ERE
Sbjct: 507 QKMKERE 513
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 24.6 bits (52), Expect = 0.36
Identities = 20/92 (21%), Positives = 41/92 (43%), Gaps = 4/92 (4%)
Query: 1 MILETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQ 60
MI I K + + + K Y+KK+ +I + LE + D +L+ + K +
Sbjct: 1 MIKAIIGKIIGTRNDRWIKQYKKKVLAI----NALEPTYEKMSDVELQNAFEELKKRVRS 56
Query: 61 LTDILNEREQLDLDQQRLNAQKQALENHMKQR 92
+ L E+ L++ + ++A + +K R
Sbjct: 57 VEKDLQEKTLLEVLPESFAITREASKRILKMR 88
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 24.3 bits (51), Expect = 0.47
Identities = 13/44 (29%), Positives = 27/44 (60%), Gaps = 1/44 (2%)
Query: 1 MILETISKQLQEQQESLNKDYRKKL-ESIKERSDRLESDLKTQF 43
MILE + ++L+ Q+ +L + Y K+ E K++S + ++ +F
Sbjct: 164 MILEQLEEELEAQKSALIRRYEKEAKEEGKKKSYAILAEATARF 207
>ref|NP_223281.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 444
Score = 23.9 bits (50), Expect = 0.61
Identities = 10/42 (23%), Positives = 23/42 (53%)
Query: 10 LQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWE 51
L + + LNK+ +K + + + D L ++ ++D + K+E
Sbjct: 253 LTGKYDDLNKNIAEKYDDLTGKYDDLNKNIAEKYDDLMGKYE 294
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 23.5 bits (49), Expect = 0.80
Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 2 ILETISKQLQEQQ-------ESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNF 54
+L+T+++ + ++ E + R KLE+ K+R + +E L +L+++ ++
Sbjct: 275 LLDTLNEPVMNKKHFADNNFEEFQRIIRAKLENFKDRIELIEELLSKYHPTRLKEYTKDG 334
Query: 55 KGYEQQ 60
Y +Q
Sbjct: 335 IIYSKQ 340
>ref|NP_223255.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Helicobacter pylori J99]
Length = 375
Score = 23.1 bits (48), Expect = 1.0
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 9/41 (21%)
Query: 63 DILNEREQLDLDQQRL---------NAQKQALENHMKQREE 94
DI+NE E++DL+ + A K+AL+++ K+ ++
Sbjct: 262 DIINENEEMDLEGTEIVIIAYGSVSLAVKEALKDYNKESKQ 302
>ref|NP_222846.1| putative [Helicobacter pylori J99]
Length = 211
Score = 22.7 bits (47), Expect = 1.4
Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 10 LQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDA----QLEKWEQNFKGYEQQLTDI 64
++ +E+L + K LE+ + + +DL F+A L+ +++ + ++L +I
Sbjct: 53 IESAKENLEQAILKALENFQSKKVLHSTDLNLNFEAFKDFTLQPYDKEIEAMREELFEI 111
>ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobacter pylori J99]
Length = 352
Score = 22.3 bits (46), Expect = 1.8
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 9 QLQEQQESL------NKDYRKKLESIKERSDRLE 36
+L ++Q S+ +K+Y LE IKE + LE
Sbjct: 36 ELSKEQSSIEEISVASKEYLSVLEGIKENKELLE 69
>ref|NP_224131.1| putative [Helicobacter pylori J99]
Length = 115
Score = 21.9 bits (45), Expect = 2.3
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 8 KQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLTDILNE 67
K Q Q + ++ + ++E + + D ++ K + E ++ +I NE
Sbjct: 27 KSSQSHQNNTKTTQNNQINQPNKDIKKIEHE---EEDEKVTKEVNDLINNENKIDEINNE 83
Query: 68 REQLDLDQQRLNAQKQALENH 88
E D Q+R N Q NH
Sbjct: 84 -ENADPSQKRTNNVLQRATNH 103
>ref|NP_223639.1| putative [Helicobacter pylori J99]
Length = 328
Score = 21.9 bits (45), Expect = 2.3
Identities = 12/63 (19%), Positives = 30/63 (47%)
Query: 22 RKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLTDILNEREQLDLDQQRLNAQ 81
R+ + SIKE+++ ++ Q ++ + + YE + +N ++ + L ++
Sbjct: 171 RENISSIKEQNEIAHETIRLQSAFEVWDFFEKLVSYEHSIYTNINLTRKISIINIALISK 230
Query: 82 KQA 84
QA
Sbjct: 231 TQA 233
>ref|NP_223664.1| putative [Helicobacter pylori J99]
Length = 466
Score = 21.6 bits (44), Expect = 3.0
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 8 KQLQEQQESLNKDYRKKLES 27
+ L+++Q+ + K YR KL++
Sbjct: 413 ENLEQKQQEIEKVYRAKLDA 432
>ref|NP_223326.1| CHORISMATE SYNTHASE [Helicobacter pylori J99]
Length = 365
Score = 21.6 bits (44), Expect = 3.0
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 73 LDQQRLNAQKQALENHMKQRE 93
LD+++ AQK A++N +K +
Sbjct: 178 LDKEQEEAQKTAIQNAIKNHD 198
>ref|NP_223181.1| 50S RIBOSOMAL PROTEIN L9 [Helicobacter pylori J99]
Length = 149
Score = 21.6 bits (44), Expect = 3.0
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 4 ETISKQLQEQQESLNKDYRKKLE 26
E I+++L+EQ SLN D +K +E
Sbjct: 96 EEITERLKEQHASLNLD-KKDIE 117
>ref|NP_223119.1| putative co-chaperone with DnaK [Helicobacter pylori J99]
Length = 288
Score = 21.6 bits (44), Expect = 3.0
Identities = 12/62 (19%), Positives = 31/62 (49%)
Query: 32 SDRLESDLKTQFDAQLEKWEQNFKGYEQQLTDILNEREQLDLDQQRLNAQKQALENHMKQ 91
S L L +A ++ +++++ +Q LN+ ++ + + +NA + L + K+
Sbjct: 2 SKSLYQTLNVSENASQDEIKKSYRRLARQYHPDLNKTKEAEEKFKEINAAYEILSDEEKR 61
Query: 92 RE 93
R+
Sbjct: 62 RQ 63
>ref|NP_222890.1| putative [Helicobacter pylori J99]
Length = 236
Score = 21.6 bits (44), Expect = 3.0
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 10 LQEQQESLNKDYRKKLESIKERSDRLESDL 39
+ +ES NK K +E++KE++ L ++
Sbjct: 184 IDNAKESFNKATDKGVEALKEKAKDLPKNM 213
>ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99]
Length = 442
Score = 21.2 bits (43), Expect = 4.0
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 14 QESLNKDYRKKLESIKERSDRLESDLKTQFD 44
Q+ LN+ + K +R ++ S+L QF+
Sbjct: 286 QKKLNQVFDKSSHQKTDRYHKITSELSKQFE 316
Score = 20.0 bits (40), Expect = 8.8
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 17 LNKDYRKKLESIKERSDRLE 36
+NK ++ +L KE+ D+L+
Sbjct: 3 VNKGFKFRLYPTKEQQDKLQ 22
>ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 433
Score = 21.2 bits (43), Expect = 4.0
Identities = 9/22 (40%), Positives = 12/22 (53%)
Query: 2 ILETISKQLQEQQESLNKDYRK 23
+ E I K E+Q+ LNK K
Sbjct: 407 VKENIDKMFYEKQDELNKIIEK 428
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 21.2 bits (43), Expect = 4.0
Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 3 LETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNF-KGYEQQL 61
L+ I LQ ++ D + K + K + + + + F ++K + + +GYE
Sbjct: 217 LDNIDYYLQLERNKF--DSKAKDIAQKATNTLIFNSERLAFSMAIDKINEKYLRGYEAFS 274
Query: 62 TDILNEREQLDLDQQRLNAQKQALENHMKQR 92
+ N ++ ++L+ N Q L KQ+
Sbjct: 275 NLLKNVKDDVELNTLTKNFTNQKLSFAQKQK 305
>ref|NP_223137.1| putative [Helicobacter pylori J99]
Length = 115
Score = 21.2 bits (43), Expect = 4.0
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 14 QESLNKDYRKKLESIKERSDRLESDLKTQ 42
Q+ ++ + ++ KER R + DLK Q
Sbjct: 82 QDKQKEEQMRLYQAKKERESRQKQDLKEQ 110
>ref|NP_222771.1| putative [Helicobacter pylori J99]
Length = 69
Score = 21.2 bits (43), Expect = 4.0
Identities = 9/38 (23%), Positives = 16/38 (41%)
Query: 17 LNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNF 54
L KD+ K S K+ + + + + L W+ F
Sbjct: 32 LPKDHSSKDASTKKEAQYIPKGFFDPYSSNLNHWDSTF 69
>ref|NP_224136.1| putative [Helicobacter pylori J99]
Length = 180
Score = 20.8 bits (42), Expect = 5.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 78 LNAQKQALENHMKQRE 93
LNA K+ ENH K ++
Sbjct: 154 LNAHKEFKENHAKVKQ 169
>ref|NP_222956.1| ABC transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 516
Score = 20.8 bits (42), Expect = 5.2
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 64 ILNEREQLDLDQQRLNAQKQALENHMKQR 92
+LN +Q+ LD++ L+ L +QR
Sbjct: 125 VLNAMKQVQLDEKFLDRYPYELSGGQRQR 153
>ref|NP_222930.1| DNA REPAIR PROTEIN [Helicobacter pylori J99]
Length = 448
Score = 20.8 bits (42), Expect = 5.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 1 MILETISKQLQEQQESLNKDYRKKLESIKERSDRLE 36
++L+ S + QQ+ L + L IK R+ RL+
Sbjct: 105 LLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLD 140
>ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 326
Score = 20.4 bits (41), Expect = 6.8
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Query: 6 ISKQLQEQQESL------NKDYRKKLESI--KERSDRLES 37
+SK L+E+QESL N Y+ L++I K D L S
Sbjct: 284 LSKGLKEEQESLYFTYIGNVLYKLDLQNIMLKYNKDLLHS 323
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 20.4 bits (41), Expect = 6.8
Identities = 11/41 (26%), Positives = 19/41 (45%)
Query: 52 QNFKGYEQQLTDILNEREQLDLDQQRLNAQKQALENHMKQR 92
+NF L +++ D++RLN + AL + K R
Sbjct: 579 KNFANKLFNAASYLKLKQESFKDKERLNEYQTALGRYAKSR 619
>ref|NP_223718.1| GLUTAMATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 448
Score = 20.4 bits (41), Expect = 6.8
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 1 MILETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEK 49
M +E I + LQ++ + ++ E+I L+SD + A LE+
Sbjct: 1 MYVEKILQSLQKKYPYQKEFHQAVYEAITSLKPLLDSDKSYEKHAVLER 49
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 20.4 bits (41), Expect = 6.8
Identities = 15/67 (22%), Positives = 31/67 (45%), Gaps = 8/67 (11%)
Query: 3 LETISKQLQEQQESLNKDYRKK--------LESIKERSDRLESDLKTQFDAQLEKWEQNF 54
+E + Q++ +QE + K+ LE K+++ + DL + +++ EQN
Sbjct: 176 IELANSQIKAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNC 235
Query: 55 KGYEQQL 61
+ QL
Sbjct: 236 QEKHGQL 242
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 20.0 bits (40), Expect = 8.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 10 LQEQQESLNKDYRKKLESIKERS 32
L E Q+SLN+ K+L ++++ S
Sbjct: 797 LIEDQKSLNEQALKRLLALEKNS 819
>ref|NP_224147.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Helicobacter pylori J99]
Length = 365
Score = 20.0 bits (40), Expect = 8.8
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 8 KQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFD 44
K+ Q Q+ ++ + KE+ D + S + TQ+D
Sbjct: 223 KKKQMAQKLGATNFYTSVGECKEKFDLIVSSIPTQYD 259
>ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 847
Score = 20.0 bits (40), Expect = 8.8
Identities = 13/45 (28%), Positives = 19/45 (41%)
Query: 44 DAQLEKWEQNFKGYEQQLTDILNEREQLDLDQQRLNAQKQALENH 88
D LE W F YE+ +L+ + +D + QAL H
Sbjct: 190 DRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEH 234
>ref|NP_223677.1| putative [Helicobacter pylori J99]
Length = 72
Score = 20.0 bits (40), Expect = 8.8
Identities = 12/34 (35%), Positives = 16/34 (46%)
Query: 16 SLNKDYRKKLESIKERSDRLESDLKTQFDAQLEK 49
S K Y + L +IKE + DL+ A L K
Sbjct: 26 SQGKSYEEALRNIKEAIELYLGDLEADELAFLSK 59
>ref|NP_223234.1| putative [Helicobacter pylori J99]
Length = 366
Score = 20.0 bits (40), Expect = 8.8
Identities = 8/22 (36%), Positives = 15/22 (67%)
Query: 25 LESIKERSDRLESDLKTQFDAQ 46
+ ++ +R DRL+ LK+ DA+
Sbjct: 138 IATLDKRIDRLQKALKSSKDAK 159
>ref|NP_223197.1| cag island protein [Helicobacter pylori J99]
Length = 252
Score = 20.0 bits (40), Expect = 8.8
Identities = 7/15 (46%), Positives = 12/15 (79%)
Query: 54 FKGYEQQLTDILNER 68
FK ++ Q+TD+ NE+
Sbjct: 217 FKVFDIQITDLQNEQ 231
>ref|NP_223014.1| putative [Helicobacter pylori J99]
Length = 294
Score = 20.0 bits (40), Expect = 8.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 2 ILETISKQLQEQQESLNKDYRKKLESIKERSDR 34
IL+T Q+Q + +LN++ + L KE ++
Sbjct: 10 ILKTAVIQMQSKPYALNENLQLALNLAKEAHNK 42
>ref|NP_222861.1| putative [Helicobacter pylori J99]
Length = 287
Score = 20.0 bits (40), Expect = 8.8
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 57 YEQQLTDILNEREQLDLDQQRLNAQKQALENHMKQR 92
++ L+D+L ER + ++++RL N R
Sbjct: 209 HQDLLSDMLLERSLIRVNKERLQTYLSLYANETSTR 244
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.307 0.125 0.321
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,208
Number of Sequences: 1491
Number of extensions: 3984
Number of successful extensions: 83
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of query: 94
length of database: 494,079
effective HSP length: 70
effective length of query: 24
effective length of database: 389,709
effective search space: 9353016
effective search space used: 9353016
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.7 bits)
S2: 40 (20.0 bits)