BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645080|ref|NP_207250.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(518 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222772.1| putative [Helicobacter pylori J99] 50 2e-07
ref|NP_222774.1| putative [Helicobacter pylori J99] 47 9e-07
ref|NP_223788.1| putative [Helicobacter pylori J99] 40 1e-04
ref|NP_223610.1| putative [Helicobacter pylori J99] 40 1e-04
ref|NP_223773.1| putative [Helicobacter pylori J99] 36 0.002
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 35 0.004
ref|NP_222962.1| putative [Helicobacter pylori J99] 35 0.005
ref|NP_223787.1| putative [Helicobacter pylori J99] 35 0.006
ref|NP_223025.1| putative [Helicobacter pylori J99] 35 0.006
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 35 0.006
ref|NP_224153.1| putative [Helicobacter pylori J99] 33 0.017
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 33 0.023
ref|NP_223994.1| putative [Helicobacter pylori J99] 32 0.030
ref|NP_223614.1| putative [Helicobacter pylori J99] 32 0.039
ref|NP_223534.1| putative [Helicobacter pylori J99] 32 0.039
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 32 0.039
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 31 0.066
ref|NP_222831.1| putative [Helicobacter pylori J99] 31 0.066
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 31 0.087
ref|NP_223966.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 30 0.11
ref|NP_223176.1| putative [Helicobacter pylori J99] 30 0.15
ref|NP_223830.1| putative [Helicobacter pylori J99] 30 0.19
ref|NP_223643.1| putative [Helicobacter pylori J99] 30 0.19
ref|NP_223618.1| putative [Helicobacter pylori J99] 29 0.33
ref|NP_223571.1| CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN [... 29 0.33
ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN... 29 0.33
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 29 0.33
ref|NP_222877.1| putative [Helicobacter pylori J99] 29 0.33
ref|NP_223376.1| putative [Helicobacter pylori J99] 28 0.43
ref|NP_222961.1| putative [Helicobacter pylori J99] 28 0.56
ref|NP_223892.1| TRYPTOPHANYL-TRNA SYNTHETASE [Helicobacter... 28 0.73
ref|NP_223659.1| putative [Helicobacter pylori J99] 28 0.73
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 28 0.73
ref|NP_222874.1| putative [Helicobacter pylori J99] 28 0.73
ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99] 28 0.73
ref|NP_223739.1| putative Outer membrane protein [Helicobac... 27 0.96
ref|NP_222847.1| putative [Helicobacter pylori J99] 27 0.96
ref|NP_222801.1| putative [Helicobacter pylori J99] 27 0.96
ref|NP_223590.1| putative [Helicobacter pylori J99] 27 1.3
ref|NP_223516.1| putative [Helicobacter pylori J99] 27 1.3
ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 27 1.3
ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1)... 27 1.6
ref|NP_223656.1| putative [Helicobacter pylori J99] 27 1.6
ref|NP_223007.1| DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING PRO... 27 1.6
ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99] 27 1.6
ref|NP_222760.1| GDP-D-mannose dehydratase [Helicobacter py... 27 1.6
ref|NP_224149.1| putative [Helicobacter pylori J99] 26 2.1
ref|NP_223285.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE [Heli... 26 2.1
ref|NP_223204.1| cag island protein [Helicobacter pylori J99] 26 2.1
ref|NP_222783.1| putative [Helicobacter pylori J99] 26 2.1
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 26 2.8
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 26 2.8
ref|NP_223387.1| putative [Helicobacter pylori J99] 26 2.8
ref|NP_222839.1| putative [Helicobacter pylori J99] 26 2.8
ref|NP_222827.1| putative [Helicobacter pylori J99] 26 2.8
ref|NP_223965.1| putative [Helicobacter pylori J99] 25 3.6
ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR ... 25 3.6
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 25 3.6
ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter ... 25 3.6
ref|NP_223919.1| ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE [He... 25 4.8
ref|NP_223066.1| putative [Helicobacter pylori J99] 25 4.8
ref|NP_224023.1| putative [Helicobacter pylori J99] 25 6.2
ref|NP_223835.1| ELONGATION FACTOR G (EF-G) [Helicobacter p... 25 6.2
ref|NP_223436.1| putative [Helicobacter pylori J99] 25 6.2
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 25 6.2
ref|NP_222895.1| putative [Helicobacter pylori J99] 25 6.2
ref|NP_222723.1| TRANSCRIPTION TERMINATION [Helicobacter py... 25 6.2
ref|NP_223860.1| putative [Helicobacter pylori J99] 24 8.1
ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pyl... 24 8.1
ref|NP_222860.1| putative [Helicobacter pylori J99] 24 8.1
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 49.7 bits (117), Expect = 2e-07
Identities = 32/146 (21%), Positives = 73/146 (49%), Gaps = 9/146 (6%)
Query: 4 ETNALRQKNRELNKKIDWQKDYDREKLERDNRDLEQCKEDLLAANENLRNRIQEWENEKN 63
ET L ++N+ L ++E+LER+N++L KE+L L+ ++ E +N K
Sbjct: 31 ETTELVEENKALTT--------EKERLERENKNLTADKENLTKEKTELQKQVNELKNSKQ 82
Query: 64 KLD-PRDERIKELEEEKRELEGILAQKENAEQKYNTLSVKNKQLEAELDMLNEKFEKLKN 122
L+ + + ++E E ++ E + +K +K L+ + ++L E + L ++ + +
Sbjct: 83 VLENEKADWLREKENLTKDRENLTKEKTELTEKNKVLTTEKERLATEKENLTKEKTESQK 142
Query: 123 MYAGVEDFEKRQKNIKEQIVKTNPKV 148
+++ ++ +N K + N K+
Sbjct: 143 QVNELKNSKQVLENEKADLTNENTKL 168
Score = 32.7 bits (73), Expect = 0.023
Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 28/146 (19%)
Query: 4 ETNALRQKNREL-NKKIDWQKDY-----DREKLERDNRDLEQC-------KEDLLAANEN 50
+ N L+ + L N+K DW ++ DRE L ++ +L + KE L EN
Sbjct: 73 QVNELKNSKQVLENEKADWLREKENLTKDRENLTKEKTELTEKNKVLTTEKERLATEKEN 132
Query: 51 L--------------RNRIQEWENEKNKLDPRDERIKELEEEKREL-EGILAQKENAEQK 95
L +N Q ENEK L + ++K + + E + + +K K
Sbjct: 133 LTKEKTESQKQVNELKNSKQVLENEKADLTNENTKLKTDKTDLTEKNQRLTTEKTELNNK 192
Query: 96 YNTLSVKNKQLEAELDMLNEKFEKLK 121
L+ + ++L A+ + L ++ + K
Sbjct: 193 ITGLATEKERLAADKENLTKESRQRK 218
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 47.4 bits (111), Expect = 9e-07
Identities = 51/195 (26%), Positives = 82/195 (41%), Gaps = 23/195 (11%)
Query: 1 MADETNALRQKNRELNKKIDWQKDYDREKLERDNRDL--------------EQCKEDLLA 46
+A ET+ L+ N +L +K D + ++KL ++N +L E + L
Sbjct: 39 LAAETSELKDANDQLRQKND-KLFITKDKLTKENTELFAENESLSVKISGLEHSNDQLWQ 97
Query: 47 ANENLRNRIQEWENEKNKLDPRDERI----KELEEEKREL--EGILAQKENAE--QKYNT 98
N L E + EK+ L + R+ L EEKREL E ++EN E K
Sbjct: 98 NNNKLTKEKAELKTEKDILAKENTRLLAARDRLTEEKRELTTEKERLKRENTELTHKITE 157
Query: 99 LSVKNKQLEAELDMLNEKFEKLKNMYAGVEDFEKRQKNIKEQIVKTNPKVLGAPSNEVEE 158
L+ +NK L E D LN + L N +E R ++ + K + ++
Sbjct: 158 LTKENKALTTENDKLNHQVTALTNERDSLEQERARLQDAHGFLEKRCTNLEKENQRLTDK 217
Query: 159 LAFLERIEKGMQEFN 173
L LE +K ++ N
Sbjct: 218 LKQLESAQKSLENTN 232
Score = 32.3 bits (72), Expect = 0.030
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 17/134 (12%)
Query: 27 REKLERDNRDLEQCKEDLLAANENLRNRIQEWENEKNKLDPRDERIKELEEEKRELEGIL 86
RE+LE +LE +LL E L E ++ ++L +++++ +++
Sbjct: 15 REELEARISELEDENTELLREREYLAAETSELKDANDQLRQKNDKLFITKDK-------- 66
Query: 87 AQKENAE--QKYNTLSVKNKQLEAELDMLNEKFEKLKNMYAGVEDFEKRQKNIKEQIVKT 144
KEN E + +LSVK LE D L + KL A + K K+ + K
Sbjct: 67 LTKENTELFAENESLSVKISGLEHSNDQLWQNNNKLTKEKAEL-------KTEKDILAKE 119
Query: 145 NPKVLGAPSNEVEE 158
N ++L A EE
Sbjct: 120 NTRLLAARDRLTEE 133
Score = 28.1 bits (61), Expect = 0.56
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 19/98 (19%)
Query: 1 MADETNALRQKNRELNKKIDWQKD---YDREKLERD------------NRDLEQCKEDLL 45
+ + N LRQ N ++ K+ ++ +LER+ DL+ L
Sbjct: 228 LENTNNQLRQALENSNVQLAQAKEKIAIEKSELEREIARLKSLEGMEAKSDLDLHNRRLA 287
Query: 46 AANENLRNRIQEWENE----KNKLDPRDERIKELEEEK 79
+ANE+L+ + ++ E E K ++D +E++ +L+ +K
Sbjct: 288 SANEDLKRQNRKLEEENIALKERVDGLNEQLSKLQPQK 325
Score = 26.9 bits (58), Expect = 1.3
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 55 IQEWENEKNKLDPRDERIKELEEEKRELEGILAQKENAEQKYNTLSVKNKQLEAELDMLN 114
I++W + + RI ELE+E EL L ++E + + L N QL + D L
Sbjct: 5 IEKWFGFSQIREELEARISELEDENTEL---LREREYLAAETSELKDANDQLRQKNDKLF 61
Query: 115 EKFEKL 120
+KL
Sbjct: 62 ITKDKL 67
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 40.4 bits (93), Expect = 1e-04
Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 7/115 (6%)
Query: 22 QKDYDREKLERDNRDLEQCKEDLLAANENLRNRIQEWENEKNKLDPRDERIKELEEEKRE 81
QK+ + E+L+R+N + E L A NE N E E EK + ++ + ++++ +
Sbjct: 133 QKEAEIERLKRENNEAES---RLKAENEKKLNEKLELEREKIEKALHEKNELKFKQQEEQ 189
Query: 82 LEGILAQKENAEQKYNTLSVKNKQLEAEL-DMLNEKFEKLKNMYAGVEDFEKRQK 135
LE + + +NA++K + ++Q + E+ ++ E+F + K VE+ +K Q+
Sbjct: 190 LEMLRNELKNAQRK---AELSSQQFQGEVQELAIEEFLRQKFPLDSVEEIKKGQR 241
Score = 36.2 bits (82), Expect = 0.002
Identities = 40/184 (21%), Positives = 82/184 (43%), Gaps = 31/184 (16%)
Query: 4 ETNALRQKNRELNKKIDWQKDYDREKLERDNRDLEQC-KEDLLAANENLRNRIQEWENEK 62
E N R + + K ++ +++ +E+ + ++ K+ A ++ R +I E E K
Sbjct: 46 EVNEKRAQYQSYFKNLEQKEEALKERAKEQQAQFDEAVKQASALALQDERAKIIE-EARK 104
Query: 63 N--------------KLDPRDERIKELEEEKRELEGILAQKENAEQKYNTLSVKNKQLEA 108
N +LD + ++++EL +++ E+E + ++EN E + + K+L
Sbjct: 105 NAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERL--KRENNEAESRLKAENEKKLNE 162
Query: 109 ELDMLNEKFE---------KLKNMYAGVEDFEKRQKNIKEQIVKTNPKVLGAPSNEVEEL 159
+L++ EK E K K +E KN + + ++ + G EV+EL
Sbjct: 163 KLELEREKIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQG----EVQEL 218
Query: 160 AFLE 163
A E
Sbjct: 219 AIEE 222
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 40.4 bits (93), Expect = 1e-04
Identities = 37/171 (21%), Positives = 79/171 (45%), Gaps = 14/171 (8%)
Query: 8 LRQKNRELNKKIDWQKDYDREKLERDNRDLEQCKEDLLAANENLRNRIQEWENEKNKLDP 67
+R+K ++L+K ++ + E N+ + +E+ LA + Q ++ K+
Sbjct: 25 IREKRKDLDKALNDK--------EAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIAS 76
Query: 68 RDERIKELEEEKRELEGILAQKENAEQKYNTLSVKNKQLEAELDMLNEKFEKLKNMYAGV 127
+++ E++ E REL + +++ A+++ N + + + L+ E+ +EK E LK +
Sbjct: 77 IQKKMSEIKSE-RELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEVLKKEMLEL 135
Query: 128 EDFEKRQKNIKEQIVKTNPKVLGAPSNEVEELAFLERIEKGMQEFNVFYPK 178
E +N+ E VK + + EEL +EK + FY +
Sbjct: 136 EKLALELENLVENEVKNIKETQQIIFKKKEEL-----VEKTEPKIYSFYER 181
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 36.2 bits (82), Expect = 0.002
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 10 QKNRELNKKIDWQKDYDREKLERDNRDLEQCKEDLLAANENLRNRIQEWENEKNKLDPRD 69
+KN ++ K + Q D+ K E+ KE+ + E++ + + +++ + +K +D
Sbjct: 60 KKNEKIEKVTEKQGDFLEPK--------EEPKEEPEESLEDIFSSLNDFQEKTDKNAQKD 111
Query: 70 ERIKELEEEK--RELEGILAQKENAEQKYNTLSVKNKQLEAELDMLNEKFEKLKN 122
E+ E EE++ RE + + +EN E K L+ L+ +K E +KN
Sbjct: 112 EQKNEQEEQRRLREQQRLKQNQENQEML--------KGLQQNLNQFTQKLESVKN 158
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 35.4 bits (80), Expect = 0.004
Identities = 30/138 (21%), Positives = 60/138 (42%), Gaps = 8/138 (5%)
Query: 29 KLERDNRDLEQCKEDLLAANENLRNRIQEWENEKNKLDP-RDERIKELEEEKRELEGILA 87
K + D+ + E+ +E +E + R+++ + LD + E +K LE E E L
Sbjct: 249 KKDDDSEEDEENEERKKVVSEKDKKRVEKVQESFKALDKAKKEWLKALEAPIDEKEDELV 308
Query: 88 QKENAEQKYNTLSVKNKQLEAELDMLNEKFEKLKNMYAGVEDFEKRQKNIK-------EQ 140
+ K TL + LE ++NE + ++ + FEK K ++ +
Sbjct: 309 RSLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYKLPLFNDT 368
Query: 141 IVKTNPKVLGAPSNEVEE 158
++ + K+L +N +E
Sbjct: 369 LIANHKKILANITNMTKE 386
Score = 28.5 bits (62), Expect = 0.43
Identities = 29/121 (23%), Positives = 53/121 (42%), Gaps = 17/121 (14%)
Query: 59 ENEKNKLDPRDERIKELEEEKRELEGILAQK-----ENAEQKYNTLSVKNKQ----LEAE 109
++E + DP+ + E +EE E + ++++K E ++ + L K+ LEA
Sbjct: 240 DDENSVSDPKKDDDSEEDEENEERKKVVSEKDKKRVEKVQESFKALDKAKKEWLKALEAP 299
Query: 110 LDMLNEKF-------EKLKNMYAGVEDFEKRQKNIKEQIVKTNPKVLGAPSNEVEELAFL 162
+D ++ K + + + D E K I E +VKT L + +EL L
Sbjct: 300 IDEKEDELVRSLTLAYKRQTLKDRLYDLEPTSKLINE-LVKTMETTLKSGDGFEKELKRL 358
Query: 163 E 163
E
Sbjct: 359 E 359
Score = 24.6 bits (52), Expect = 6.2
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 105 QLEAELDMLNEKFEKLKNMYAGVEDFE--KRQKNIKEQIVKTNPKVLGAPSNEVEEL 159
Q+E+ LD LNE+ + + M G+ D E + + I +++ T +V S+ +++L
Sbjct: 610 QIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKL 666
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 35.0 bits (79), Expect = 0.005
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 76 EEEKRELEGILAQKENAEQKYNTLSVKNKQL-EAELDMLNEKF----EKLKNMYAGVEDF 130
E +K EL+ L Q EQ L +N +L + + D+LN+K EKLKN+ A E F
Sbjct: 31 ESKKAELKEDLRQLSEKEQSLRILQTENARLLDEKSDLLNKKEKEIDEKLKNLAAKEEAF 90
Query: 131 -------EKRQKNIKEQ 140
+KR KN+ E+
Sbjct: 91 KTLQTEEKKRLKNLIEE 107
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 34.7 bits (78), Expect = 0.006
Identities = 25/114 (21%), Positives = 52/114 (44%), Gaps = 7/114 (6%)
Query: 37 LEQCKEDLLAANENLRNRIQE-----WENEKNKLDPRDER--IKELEEEKRELEGILAQK 89
+++ KED + R+ E N + KLD + + I+ L + + + + K
Sbjct: 314 IKKMKEDYTNKTDEALERLDEIIKTEQNNSQTKLDTENLKRIIETLRSKIKANQQKMIDK 373
Query: 90 ENAEQKYNTLSVKNKQLEAELDMLNEKFEKLKNMYAGVEDFEKRQKNIKEQIVK 143
+ L +++A D++ + E++ N ++D EK++K+ KEQ K
Sbjct: 374 SKEMSRNFKLDSNKNEIDAIKDLIKKANEQITNHNETIKDIEKQKKSCKEQTWK 427
Score = 32.0 bits (71), Expect = 0.039
Identities = 32/146 (21%), Positives = 67/146 (44%), Gaps = 21/146 (14%)
Query: 53 NRIQEWENEKNKLDPRDERIKELEEEKRELEGI----------LAQKENAEQKYNTLSVK 102
++I + NE K++ +++ KE + +++GI L + E+ ++ N + K
Sbjct: 77 SKIAWYNNESLKIEVYNKQFKEEQLRNSQVKGIFTLGKKTNENLEKIESKKESINKENEK 136
Query: 103 NKQLEAELDMLNEKFEK---------LKNMY-AGVEDFEKRQKNIKEQIVKTNPKVLGAP 152
+ EA L +L +K EK KN+Y E+F++ + K + K K+L
Sbjct: 137 KIKNEASLQVLTQKKEKEEKDFTDSCWKNLYKKNEEEFKEILEGFKRK-EKFKGKILKEF 195
Query: 153 SNEVEELAFLERIEKGMQEFNVFYPK 178
N+ + + +EK ++ + + K
Sbjct: 196 ENDKHNQSEIVGLEKLKEKIEIVFSK 221
Score = 29.6 bits (65), Expect = 0.19
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 8 LRQKNRELNKKIDWQKDYDREKLERDNRD----LEQCKEDLLAANENLRNRIQEWENEKN 63
+++ N ++ + KD +++K + + + K D+ N+ + N +
Sbjct: 397 IKKANEQITNHNETIKDIEKQKKSCKEQTWKFLINEFKSDIQEYNKKYCGLEKGINNLEK 456
Query: 64 KLDPRDERIKELEEEKRELEGILAQKENAEQKYNTL 99
++ E++K+LE E +ELE + + + NTL
Sbjct: 457 EISENQEKVKKLENEIKELEKNMVSIKPIVNEINTL 492
Score = 24.6 bits (52), Expect = 6.2
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 371 SNDGYLKVETFNRWINKKGDQEAKLEGKYKKLTE----EINERLDACGRSI 417
+N+ K+E+ INK+ +++ K E + LT+ E + D+C +++
Sbjct: 116 TNENLEKIESKKESINKENEKKIKNEASLQVLTQKKEKEEKDFTDSCWKNL 166
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 34.7 bits (78), Expect = 0.006
Identities = 26/126 (20%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 18 KIDWQKDYDREKLERDNRDLEQCKEDLLAANENLRNRIQEWENEKNKLDPRDERIKELEE 77
K + Q++ +E+++ ++++ ++ +A N + ++ E + + P+DE + + E
Sbjct: 174 KEEAQEEVKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELE 233
Query: 78 EKRELEGILAQKENAEQ---KYNTLSVKNKQLEAELDMLN-EKFEKLKNMYAGVEDFEKR 133
+ ELE ++E EQ K T +K ++ E D + ++ E ++ + +++
Sbjct: 234 TQEELE--TPKEETQEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSND 291
Query: 134 QKNIKE 139
Q+N KE
Sbjct: 292 QENKKE 297
Score = 32.3 bits (72), Expect = 0.030
Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 11/149 (7%)
Query: 9 RQKNRELNKKIDWQKDYDREKLERDNRDLEQCKEDLLAANENLRNRIQEWENEKNKLDPR 68
+++ +E + + +D + ++LE + Q + + I E EK + +
Sbjct: 295 KKETQETQENTETPQDIETQELEIPKEEETQEVAEKTQVQGLEKEEIAETPQEKEIQETQ 354
Query: 69 DERIKELEEEKRELEGILAQKENAEQKYNTLSVKNKQLEAELDMLNEKFEKLKNMYAGVE 128
DE +ELE + +L+ K+ + Q+ S +N Q D + E ++ Y +E
Sbjct: 355 DETPQELEAQDEKLQENETPKDESMQE----SAQNLQ-----DKETPQEETQEDHYESIE 405
Query: 129 DFEK--RQKNIKEQIVKTNPKVLGAPSNE 155
D + K + E++ N V P+NE
Sbjct: 406 DIPEPVMAKAMGEELPFLNEAVAKIPNNE 434
Score = 30.4 bits (67), Expect = 0.11
Identities = 35/177 (19%), Positives = 77/177 (42%), Gaps = 12/177 (6%)
Query: 3 DETNALRQKNRELNKKIDWQKDYDREKLERDNRD--LEQCKEDLLAANENLRNRIQEWEN 60
+E ++++ +E K+ + D EK + D +E K++ ++ + ++ +
Sbjct: 184 EEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELETPKE 243
Query: 61 EKNKLDPRDERIKELEEEKRELEGILAQKENAEQKYNTLSVKNKQL-EAELDMLNEK-FE 118
E + +P E +E++EEK+E Q + Q+ + K++ E D N+K +
Sbjct: 244 ETQEQEPIKEETQEIKEEKQE----KTQDSPSAQELEAMQELVKEIQENSNDQENKKETQ 299
Query: 119 KLKNMYAGVEDFEKRQ----KNIKEQIVKTNPKVLGAPSNEVEELAFLERIEKGMQE 171
+ + +D E ++ K + Q V +V G E+ E + I++ E
Sbjct: 300 ETQENTETPQDIETQELEIPKEEETQEVAEKTQVQGLEKEEIAETPQEKEIQETQDE 356
Score = 30.0 bits (66), Expect = 0.15
Identities = 35/148 (23%), Positives = 66/148 (43%), Gaps = 18/148 (12%)
Query: 36 DLEQCKEDLLAANENLRNRIQEWENEKNKLDPRDE----RIKELEEEKRELEGILAQKEN 91
DLE ++ E L + E E E K + ++E +KE++EE +E + ++E
Sbjct: 146 DLEALAKEEPNNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEKQ----KQEV 201
Query: 92 AEQKYNTLSVKNKQLEAELDMLNEKFEKLKNMYAGVEDFE------KRQKNIKE--QIVK 143
AE + K+ + + ++ K E++ E+ E + Q+ IKE Q +K
Sbjct: 202 AENPQDEEKPKDDETQGSVE--PPKDEEVSKELETQEELETPKEETQEQEPIKEETQEIK 259
Query: 144 TNPKVLGAPSNEVEELAFLERIEKGMQE 171
+ S +EL ++ + K +QE
Sbjct: 260 EEKQEKTQDSPSAQELEAMQELVKEIQE 287
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 34.7 bits (78), Expect = 0.006
Identities = 63/280 (22%), Positives = 113/280 (39%), Gaps = 64/280 (22%)
Query: 57 EWENEKNKLDPRDERIKELEEEKRELEGILAQKENAEQKYNTLSVKNKQLEAELDMLNEK 116
E EN+++ E +KEL + K E + AQ EN ++ + +S +L+ E++ L ++
Sbjct: 427 EMENKESNHKRMQEILKELSDLKEEKIQLEAQFENEKEVFKEIS----RLKMEMEGLKKE 482
Query: 117 FEKLKN----------MYAGVEDFEKRQKNI--KEQIVKTNPKVL--GAPSNEVEELAF- 161
E+ K Y+ + + EK++K + K + ++ N +L N + E+
Sbjct: 483 AERFKRNGDYQQAAEIEYSKIPEKEKKEKELQHKWETMQQNGALLQNALTENNIAEIVSQ 542
Query: 162 ----------------LERIEKGMQEFNVFYPKRLLYMFHTALK------STSLSPLS-- 197
+ IE +Q+ V ++ L A+K S S P+
Sbjct: 543 WTHIPVQKMLQSEKNRVLNIESELQK-RVVGQEKALKAIAKAIKRNKAGLSDSNKPIGSF 601
Query: 198 VLSGVSGTGKSELPKLYVHF---GGLNFLSIAVQPTWDSPESLMGYFHAIENKFDATEFL 254
+ G +G GK+E K F N + I + + HAI A
Sbjct: 602 LFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYMEK--------HAISRLIGAAPGY 653
Query: 255 RFFI---QTTLSNNEEPYGLKEAMSIVLLDEMNLAHIELY 291
+ Q T + +PY S+VLLDE+ AH +++
Sbjct: 654 VGYEEGGQLTEAVRRKPY------SVVLLDEVEKAHPDVF 687
Score = 34.7 bits (78), Expect = 0.006
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 57 EWENEKNKLDPRDERIKELEEEKRELEGILAQKENAEQKYNTLSVKNKQLEAELDMLNEK 116
+ E+E KL I+ LE EK+ LE + KE+ ++ + + L+ E L +
Sbjct: 401 QMESEPAKLSSVKRSIQRLEMEKQALE--MENKESNHKRMQEILKELSDLKEEKIQLEAQ 458
Query: 117 FEKLKNMYAGVEDFEKRQKNIKEQI--VKTNPKVLGAPSNEVEELAFLERIEKGMQ 170
FE K ++ + + + +K++ K N A E ++ E+ EK +Q
Sbjct: 459 FENEKEVFKEISRLKMEMEGLKKEAERFKRNGDYQQAAEIEYSKIPEKEKKEKELQ 514
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 33.1 bits (74), Expect = 0.017
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 14/161 (8%)
Query: 8 LRQKNRELNKKIDWQKDYDREKLERDNRDLEQCKEDLLAANENLRNRIQEWENEKNKLDP 67
L K ++ K+++ QK+ +EKLE+ LE K L A E L+ + ++ ++
Sbjct: 181 LEHKKNQIIKRLNAQKERLKEKLEK----LEDPKTLQLEAKE-LQTQASLLLTYQHLINR 235
Query: 68 RDERI--KELEEEKRELEGILAQKENA-EQKYNTLSVKNKQ----LEAELDMLNEKFEKL 120
R+ R+ K+ E+++ +E + NA K TLS K KQ L E + L EK
Sbjct: 236 RENRVILKDFEDKECMIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEENLKEKIAFK 295
Query: 121 KNMYAGVEDFEKRQKNIKEQIVKTNPKVLGAPSNEVEELAF 161
+N V D ++++ E + + P N E L +
Sbjct: 296 ENQINYVRD--AAEESVLEMFMPVKNSKIKRPMNGYEVLYY 334
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 32.7 bits (73), Expect = 0.023
Identities = 30/152 (19%), Positives = 69/152 (44%), Gaps = 14/152 (9%)
Query: 28 EKLERDNRDLEQCKEDLLAANENLRNRIQEWENEKNKLDPR-------DERIKELEEEKR 80
+++++ +DLE+ + +++ ++ KNK++ + DE + +E
Sbjct: 609 DEVKQAQKDLEKSLKKRERLEKDVAKNLESKSGNKNKMEAKSQANSQKDEIFALINKEAN 668
Query: 81 ELEGILAQKENAEQKYNTLSVKNKQLEAELDMLNEKFEKLKNMYAGVEDFEKRQKNIKEQ 140
+A +N + LS K + + +L ++ F++ KN +DF K ++ +K
Sbjct: 669 RDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKN--GKNKDFSKAEETLK-- 724
Query: 141 IVKTNPKVLGAPSNEVEELAFLERIEKGMQEF 172
+K + K LG E ++ +E + + EF
Sbjct: 725 ALKGSVKDLGI---NPEWISKVENLNAALNEF 753
Score = 26.2 bits (56), Expect = 2.1
Identities = 15/39 (38%), Positives = 20/39 (50%), Gaps = 1/39 (2%)
Query: 461 LRGVQTRNNQHLTKIQDLLKDFSVSSD-FKQAMENDFKE 498
L+G++ + L I LKDFS S D FK DF +
Sbjct: 680 LKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSK 718
Score = 25.0 bits (53), Expect = 4.8
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 441 KNKALQFAYEECLVLKIFPKLRGVQTRNNQHLTKIQDLL-----------KDFSVSSDFK 489
KNK A E LK K G+ N + ++K+++L KDFS + K
Sbjct: 712 KNKDFSKAEETLKALKGSVKDLGI---NPEWISKVENLNAALNEFKNGKNKDFSKVTQAK 768
Query: 490 QAMENDFKEFVFN 502
+EN K+ + N
Sbjct: 769 SDLENSIKDVIIN 781
>ref|NP_223994.1| putative [Helicobacter pylori J99]
Length = 168
Score = 32.3 bits (72), Expect = 0.030
Identities = 26/109 (23%), Positives = 46/109 (41%), Gaps = 14/109 (12%)
Query: 73 KELEEEKRELEGILAQKENAEQK---------YNTLSVKNKQLEAELDMLNEKFEKLKNM 123
K L E + LEG+ +K E YN L K ++ E D L EK L+N
Sbjct: 56 KRLRELEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENK 115
Query: 124 YAGVEDFEKRQKNIKEQIVKTNPKVLGAPSNEVEELAFLERIEKGMQEF 172
+ + + + ++Q++K + V+ ++ ++ KG EF
Sbjct: 116 FKDMGHYAASDEVNEKQVLK-----MYQEGYSVDSISKEFKVSKGEVEF 159
>ref|NP_223614.1| putative [Helicobacter pylori J99]
Length = 230
Score = 32.0 bits (71), Expect = 0.039
Identities = 29/127 (22%), Positives = 58/127 (44%), Gaps = 24/127 (18%)
Query: 29 KLERDNRDLEQCKEDLLAANENLRNRIQEWENEKNKLDPRDERIKELEEEKR-------- 80
K E DN E + E L+N ++EW + KN P +E +E EE K+
Sbjct: 105 KEEADNNYQESLND------EKLQNNLREWRDLKN--TPEEENYREFEEIKKMVLYFRDW 156
Query: 81 ---ELEGILAQKENAEQKYNTLSVKNKQLEAELDMLN----EKFEKL-KNMYAGVEDFEK 132
L+ ++E ++ + + N+ L+ + + N ++F+++ + Y + EK
Sbjct: 157 CMFRLDWYKLRQEEIQKHRDLMDNDNRLLQLDYSLKNLSILKRFKEINEKNYQDHLNNEK 216
Query: 133 RQKNIKE 139
Q +++E
Sbjct: 217 LQNDLRE 223
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 32.0 bits (71), Expect = 0.039
Identities = 19/57 (33%), Positives = 32/57 (55%), Gaps = 7/57 (12%)
Query: 90 ENAEQKYNTLSVKNKQLEAELDMLNEK-------FEKLKNMYAGVEDFEKRQKNIKE 139
+NA+QK N L VK+K++ A+ LN EKLKN ++ +Q+++K+
Sbjct: 460 KNAKQKLNALGVKSKKIIAQHQSLNHLVKNNQVIMEKLKNATEEIKRSLMQQESVKD 516
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 32.0 bits (71), Expect = 0.039
Identities = 43/205 (20%), Positives = 89/205 (42%), Gaps = 34/205 (16%)
Query: 12 NRELNKKIDWQKDYDREKLERDNRDLEQCKEDLLA---------ANENLRNRIQEW---E 59
N+ L++ I Q++ + +++ER EQ + + L A E +R R ++ +
Sbjct: 196 NKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVRQRAKDKISIK 255
Query: 60 NEKNKLDPRDERIK------------ELEEEKRELEGIL--AQKENAEQKYNTLSVKNKQ 105
+K++ P D I+ + K + IL AQK+N Y T+ ++ Q
Sbjct: 256 TDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTVKLEYPQ 315
Query: 106 LEAELDMLNEKFEKLKNMYAGVEDFEKRQKNIKEQIVKTNPKVLGAPSNEVEELAFLERI 165
++ E+ +K E+ +++++ IK++ + T + E++ E+I
Sbjct: 316 RHEVSSVIEEELKKR-------EEAKRQRELIKQENLNTTAYINRVMMASNEQIINKEKI 368
Query: 166 EKGMQEFNVFYPKRLLYMF-HTALK 189
+ Q+ + K L + H ALK
Sbjct: 369 REEKQKIILDQAKALETQYVHNALK 393
Score = 30.8 bits (68), Expect = 0.087
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 73 KELEEEKRELEGILAQKENAEQKYNTLSVKNKQLEAELDMLNEKFEKLKNMYAGVEDFEK 132
KELEE+K+ LE +KE EQ K ++ + E E L N + ++
Sbjct: 139 KELEEQKKALE---KEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNL-S 194
Query: 133 RQKNIKEQIVKTNPKVLGAPSNEVEELAFLERIEKGMQ 170
KN+ E I + NE++++ LE +++ Q
Sbjct: 195 NNKNLSELIKQQR-------ENELDQMERLEDMQEQAQ 225
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 31.2 bits (69), Expect = 0.066
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 26 DREKLERDNRDLEQCKEDLLAANENLRNRIQEWENEKNKLDPRDERIKEL-EEEKRELEG 84
D+EKL + + +L NE+L N ++E E+ KN E+ KE+ +K ELE
Sbjct: 512 DKEKLNVLIENSSTLERELKQKNEHLENALKEQEDLKNAWLLEMEKQKEIFHHKKLELEK 571
Query: 85 ILAQKEN---AEQKYNTLSVKNKQLEAELDMLNE 115
Q N +E S +K++ ++LN+
Sbjct: 572 SYQQALNILKSEVASKDTSSMHKEIHKASEILNK 605
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 31.2 bits (69), Expect = 0.066
Identities = 26/127 (20%), Positives = 60/127 (46%), Gaps = 22/127 (17%)
Query: 3 DETNALRQKNRELNK---KIDWQK---DYDREKLERDNRDLEQCKEDLLAANENLRNRIQ 56
D+ L Q+ +E NK K++ ++ + +R+K + +LEQ ++ + L N
Sbjct: 124 DKQIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQI 183
Query: 57 EWENEKNKLDPRDERIK----ELEEEKR------------ELEGILAQKENAEQKYNTLS 100
+ E E+ K + ++ ELE++K+ + + I ++N ++K+ L
Sbjct: 184 KAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQEKHGQLF 243
Query: 101 VKNKQLE 107
+K +++
Sbjct: 244 IKKARIK 250
Score = 31.2 bits (69), Expect = 0.066
Identities = 28/105 (26%), Positives = 50/105 (46%), Gaps = 15/105 (14%)
Query: 36 DLEQCKEDLLAANENLRNRIQEWENEKNKLDPRDERIKELEEEKRELEGILAQKENAEQK 95
+LEQ K++ + L Q+ E E+ K + + ELE+E+ QK N
Sbjct: 128 ELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEI---ELEQER--------QKTNK--- 173
Query: 96 YNTLSVKNKQLEAELDMLNEKFEKLKNMYAGVEDFEKRQKNIKEQ 140
+ + + N Q++AE + + EK K + +E +++QK I Q
Sbjct: 174 -SGIELANSQIKAEQERQKTEQEKQKANKSEIELEQQKQKTINTQ 217
Score = 26.2 bits (56), Expect = 2.1
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 74 ELEEEKRELE--GILAQKEN--AEQKYNTLSVKNKQLEAELDMLNEKFEKLKNMYAGVE- 128
ELE+EK+E GI ++E EQ+ + +LE E N+ +L N E
Sbjct: 128 ELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQIKAEQ 187
Query: 129 -----DFEKRQKNIKE-QIVKTNPKVLGAPSNEV-EELAFLERIEKGMQE 171
+ EK++ N E ++ + K + + + E+ F++ E+ QE
Sbjct: 188 ERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQE 237
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 30.8 bits (68), Expect = 0.087
Identities = 24/90 (26%), Positives = 46/90 (50%), Gaps = 10/90 (11%)
Query: 8 LRQKNRELNKKID-WQKDYDR-EKLERDNRDLEQCKEDLLAANENLRNRIQEWENEKNKL 65
++ KN+ + +D + + R EKLER+ R LE K ++L R+ + + +L
Sbjct: 146 IQNKNKAFSPLLDALETKFTRLEKLERERRSLEDKKR----FQKDLEERLNFEKMKLERL 201
Query: 66 DPRDERIKELEEEKRELEGILAQKENAEQK 95
D +++ + L E+K+ +L+ KE K
Sbjct: 202 DLKEDEYERLLEQKK----LLSSKEKLNDK 227
Score = 29.3 bits (64), Expect = 0.25
Identities = 22/77 (28%), Positives = 38/77 (48%), Gaps = 5/77 (6%)
Query: 102 KNKQLEAELDMLNEKF---EKLKNMYAGVEDFEKRQKNIKEQI--VKTNPKVLGAPSNEV 156
KNK LD L KF EKL+ +ED ++ QK+++E++ K + L +E
Sbjct: 149 KNKAFSPLLDALETKFTRLEKLERERRSLEDKKRFQKDLEERLNFEKMKLERLDLKEDEY 208
Query: 157 EELAFLERIEKGMQEFN 173
E L +++ ++ N
Sbjct: 209 ERLLEQKKLLSSKEKLN 225
Score = 25.0 bits (53), Expect = 4.8
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 17/112 (15%)
Query: 169 MQEFNVFYPKRLLYMFHTALKSTSLS---PLSVLSGVSGTGKSELPKLYVHFGGL---NF 222
M++FN RL + + L LS +SG SG GKS L + GL N
Sbjct: 1 MRDFNNIQITRLKVRQNAVFEKLDLEFKDGLSAISGASGVGKSVLIASLLGAFGLKESNA 60
Query: 223 LSIAVQ---PTWDSPESLMGYFHAIENK-----FDATEFLRFFI-QTTLSNN 265
+I V+ P D+ E G F E++ E R+F+ QT+LS N
Sbjct: 61 SNIEVELIAPFLDTEE--YGIFREDEHEPLVISVIKKEKTRYFLNQTSLSKN 110
>ref|NP_223966.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 341
Score = 30.4 bits (67), Expect = 0.11
Identities = 20/67 (29%), Positives = 34/67 (49%), Gaps = 1/67 (1%)
Query: 70 ERIKELEEEKRELEGILAQKENAEQKYNTL-SVKNKQLEAELDMLNEKFEKLKNMYAGVE 128
E +K + +EG+ ++ + N + + ++K LEA ++ N K NM+A VE
Sbjct: 204 EFLKNTHQAILFVEGVKGKQAITLENINPIINAQDKMLEARFNVPNLKLLYYPNMFAQVE 263
Query: 129 DFEKRQK 135
F K QK
Sbjct: 264 IFHKPQK 270
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 30.0 bits (66), Expect = 0.15
Identities = 32/124 (25%), Positives = 54/124 (42%), Gaps = 10/124 (8%)
Query: 41 KEDLLAANENLRNRIQEWENEKNKLDPRDERIKELEEE-----KRELEGILAQKENAEQK 95
KE+ + A EN R QE E K + E LEE+ +R+ + ++ + +++
Sbjct: 250 KEERIDARENKREIKQEAIKEPKKANQGTENAPTLEEKNYQKAERKFDAKEERRRSRDER 309
Query: 96 YNTLSVKN----KQLEAELDMLNEKFEKLKNMYAGVEDFEKRQKNIKEQIVKTNPKVLGA 151
T + K ++ E E D +EK E + A D + N KE + N +
Sbjct: 310 KKTKATKKAMEFEEREKEHDERDEK-ETEERRKALEMDKGNEKVNAKENEREINQESANE 368
Query: 152 PSNE 155
PS+E
Sbjct: 369 PSSE 372
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 29.6 bits (65), Expect = 0.19
Identities = 30/137 (21%), Positives = 65/137 (46%), Gaps = 15/137 (10%)
Query: 46 AANENLRNRIQEWENEKNKLDPRDERIKELEEEKRELEGILAQKENAEQKYNTLSVKNKQ 105
A +++ + Q + +N D ++ ELE+E+++ E +K+ EQ+ + ++
Sbjct: 95 ADDQSKKEVAQAQKEAENARDRANKSGIELEQEEQKTE---QEKQKTEQEKQKTEQEKQK 151
Query: 106 LEAELDMLNEKFEKLKNMYAGVE-DFEKRQKNIKEQIVKTNPKVLGAPSNEVEELAFLER 164
E E ++ +K N+ + E+ Q+ +++ KTN N ++L + +
Sbjct: 152 TEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTN--------NTQKDL--VNK 201
Query: 165 IEKGMQE-FNVFYPKRL 180
E+ QE N F+ K+L
Sbjct: 202 AEQNCQENHNQFFIKKL 218
>ref|NP_223643.1| putative [Helicobacter pylori J99]
Length = 338
Score = 29.6 bits (65), Expect = 0.19
Identities = 25/97 (25%), Positives = 42/97 (42%), Gaps = 8/97 (8%)
Query: 6 NALRQKNRELNKKIDWQKDYDREKLERDNRDLEQCKEDLLAANEN--LRNRIQEWENEKN 63
N + N ++ QKDY +E+ ++ N E DL N N L R++ + KN
Sbjct: 243 NLDKLSNYAYKTRLFHQKDYLQERRDKTNIIYEDLHRDLSPDNRNEALLERMRSYTLLKN 302
Query: 64 KLDPRDERIKELEEEKRELEGILAQKENAEQKYNTLS 100
E+ +L E ++ +Q ++ QK N S
Sbjct: 303 ------EKYNQLANETKQQTQTRSQSQSYYQKKNKAS 333
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 28.9 bits (63), Expect = 0.33
Identities = 20/98 (20%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 24 DYDREKLERDNRDLEQCKEDLLAANENLRNRIQEWENEKNKLDPRDERIKELEEEKRELE 83
DY +EK + + L+ +D+ E LR ++E + + I+E+ ++K L
Sbjct: 72 DYSKEKALEEIKALDLGVKDIEKTYEKLRANLEEEYSSVAVNSVVKKVIEEVRDQKPYLA 131
Query: 84 GILAQKENAEQKYNTLSVKN--KQLEAELDMLNEKFEK 119
++ + + ++ +N K + E++ +N F K
Sbjct: 132 SLINKPNEFNSEIESIMQQNLIKNAKLEIEKINLSFSK 169
>ref|NP_223571.1| CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN [Helicobacter pylori J99]
Length = 1085
Score = 28.9 bits (63), Expect = 0.33
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 110 LDMLNEKFEKLKNMYAGVEDFEKRQKNIKEQIVKTNPK---------VLGAPSNEVEELA 160
L+ L + L+N + G E K + IK++I + NPK LG +EV EL
Sbjct: 388 LEALQKALCSLENNWLGFESLSKDLEAIKKEIRRPNPKRLLYIADAFRLGVSVDEVFELC 447
Query: 161 FLER 164
++R
Sbjct: 448 QIDR 451
>ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN 2 (HAP2) [Helicobacter
pylori J99]
Length = 685
Score = 28.9 bits (63), Expect = 0.33
Identities = 15/66 (22%), Positives = 36/66 (53%), Gaps = 5/66 (7%)
Query: 63 NKLDPRDERIKELEEE-KRELEGILAQKENAEQ----KYNTLSVKNKQLEAELDMLNEKF 117
N +D + ++K E+ R+ + + KENA++ +YN ++ + ++++ N+KF
Sbjct: 611 NLIDGGNAKLKIYEDSLDRDAKSLTKDKENAQELLKTRYNIMAERFAAYDSQISKANQKF 670
Query: 118 EKLKNM 123
++ M
Sbjct: 671 NSVQMM 676
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 28.9 bits (63), Expect = 0.33
Identities = 30/130 (23%), Positives = 52/130 (39%), Gaps = 29/130 (22%)
Query: 45 LAANENLRNRIQEWENEKNKLDPRDERIKELEEEK--RELEGILAQKENAEQKYNTLSVK 102
L ANE R + E EK + + ++K+LE +K + LE L +K + + + +
Sbjct: 295 LIANEEEREKKLLAEKEKQETELAKYKLKDLENQKKLKALEAELKKKNTKKPRVVEVPIP 354
Query: 103 NKQLEAELDM------------LNEKFEKLKNMYAG---------------VEDFEKRQK 135
K +++ M L +K +K Y G +ED ++
Sbjct: 355 PKTSDSDETMRVIKEKENYNGLLVDKETTIKRSYKGTLISENSYSKKTPINLEDLRSLEE 414
Query: 136 NIKEQIVKTN 145
IK VK+N
Sbjct: 415 EIKSYYVKSN 424
>ref|NP_222877.1| putative [Helicobacter pylori J99]
Length = 243
Score = 28.9 bits (63), Expect = 0.33
Identities = 35/155 (22%), Positives = 64/155 (40%), Gaps = 32/155 (20%)
Query: 43 DLLAANENLRNRIQEWENEKNKLDPRDERIKELEEEKRELEGILAQKENAEQKYNTLS-- 100
D L + +L N ++ E ++ +P E KE +E E + +KE+AE KY +S
Sbjct: 7 DALMSGGDLEN-LEALEAKEEAKEPTKEEPKESKENSNYSEKMTVKKEDAE-KYGKISPH 64
Query: 101 -------------------------VKNKQLEAELDMLNEKFEKLKNMYAGVEDFEKRQK 135
VK Q+ +LD++ EK+ M +++ ++ +
Sbjct: 65 EWPPPPPTEEHKVVHQLDDVTRDSEVKATQIFDQLDLIGASAEKIAKMVKKIQEPLQKHQ 124
Query: 136 NIKEQIVKTNPKVLG---APSNEVEELAFLERIEK 167
I + + P V A + + E L L+ IE+
Sbjct: 125 EIFDNLHAHFPHVESFKTALNEQQEILNALKSIEE 159
>ref|NP_223376.1| putative [Helicobacter pylori J99]
Length = 152
Score = 28.5 bits (62), Expect = 0.43
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 73 KELEEEKRELEGILAQKENAEQKYNTLSVKNKQLEAELDMLNEKFEKLKNMYAG------ 126
K +E+ ++ G++A ++ + T +K K++E + + F K + YA
Sbjct: 25 KTSDEDLAKMAGVVAPQDIVDY---TKELK-KRMEKMPEDKRKAFHKQLHEYATKNTDKM 80
Query: 127 -VEDFEKRQKNIKEQIVKTN 145
V DFE RQK IKE + K N
Sbjct: 81 TVADFEARQKAIKEALKKGN 100
>ref|NP_222961.1| putative [Helicobacter pylori J99]
Length = 142
Score = 28.1 bits (61), Expect = 0.56
Identities = 18/71 (25%), Positives = 37/71 (51%), Gaps = 7/71 (9%)
Query: 11 KNRELNKKIDWQKDYDREKLERDNRDLEQCKEDLLAANENLRNRIQEWENEKNKLDPRDE 70
+ ++L + + +Y +++ E +DL+ ++D L AN QE E K L+ +
Sbjct: 60 QTQQLKSALRMEIEYYQQEGENLTKDLKILEKDYLLAN-------QELEKAKIILEKEKQ 112
Query: 71 RIKELEEEKRE 81
+ KE+ E+K +
Sbjct: 113 KEKEILEKKEQ 123
>ref|NP_223892.1| TRYPTOPHANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 326
Score = 27.7 bits (60), Expect = 0.73
Identities = 18/79 (22%), Positives = 36/79 (44%), Gaps = 5/79 (6%)
Query: 65 LDPRDERIKELEEEKRELEGILAQKENAEQKYNTLSVKNKQLEAELDMLNEKFEKLKNMY 124
LD D +K++++ + G++A E E +N L++ + + + E+F
Sbjct: 210 LDEPDVIVKKIKKAATDSMGVIAFDETREGVFNLLNIYMLLSDESPEKIEERFRN----- 264
Query: 125 AGVEDFEKRQKNIKEQIVK 143
G DF+K + Q +K
Sbjct: 265 KGYGDFKKELAEVVIQSLK 283
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 27.7 bits (60), Expect = 0.73
Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 12/136 (8%)
Query: 38 EQCKEDLLAANENLRNRIQEWENEKNKLDPRDERIKELEEEKRELEGILAQKENAEQKYN 97
E CKE R+ E + L + ++KEL+ K +L+ + +++ EQ
Sbjct: 197 EDCKEFFNELRSEFAYRLNEHLLSEEYLYVNEPKLKELDNIKLQLQDLEKEEKALEQ--- 253
Query: 98 TLSVKNKQLEAELD--MLNEKFEKL--KNMYAGVEDFEKRQKNIKEQIVKTNPKVLG--A 151
+K+ Q E +L+ + E ++L KN ++ +K++I K +
Sbjct: 254 ---IKSPQDEWDLNKALQKEYLQELKDKNKAKALDIQNNHSTPLKQKISKFKIALFNHKD 310
Query: 152 PSNEVEELAFLERIEK 167
S++ +E ++RI+K
Sbjct: 311 TSDDEKESLSIDRIDK 326
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 27.7 bits (60), Expect = 0.73
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 84 GIL-AQKENAEQKYNTLSVKNKQLEAELDMLNEKFEKLKNMYAGVEDFEKRQKNIKEQIV 142
G+L A E +N + + +++ A+ D L + + L N + +ED R++ IKE +
Sbjct: 14 GVLSANVEQFGSFFNEIKKEQEEVAAKEDALKARKKLLNNTHDFLEDLVFRKQKIKELVD 73
Query: 143 KTNPKVLGAPSNEVEELAFLERIEKG 168
+L + +E LE+ +G
Sbjct: 74 YRAKVLLDLENKYKKEKEALEKETRG 99
>ref|NP_222874.1| putative [Helicobacter pylori J99]
Length = 157
Score = 27.7 bits (60), Expect = 0.73
Identities = 32/129 (24%), Positives = 53/129 (40%), Gaps = 13/129 (10%)
Query: 45 LAANENLRNRIQEWENEKNKLDPRDERIKELEEEKRELEGILAQKENAEQKYNTLSVKNK 104
+A L+N I E NE K+ K +++ + + + NT + KN
Sbjct: 1 MAGRMELKNIISETLNEIEKM------AKTIDDGFNTAQKTPSFFKTPSHLQNTPNSKNA 54
Query: 105 QLEAELDMLNEKFEKLKNMYAGVEDFEKRQKNIKEQIVKTNPKVLGAPSNEVEELAFLER 164
E + K++ E+ E+ ++ I E+IV+ NP P+ V LER
Sbjct: 55 NTPLE----PKNAAKIETQEKITEEKEEAKEIITEEIVQENPTQALIPNERVFLKGLLER 110
Query: 165 ---IEKGMQ 170
+ KGMQ
Sbjct: 111 TLVLFKGMQ 119
>ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99]
Length = 191
Score = 27.7 bits (60), Expect = 0.73
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 70 ERIKELEEEKRELEGILAQKENAEQKYNTLSVKNKQLEAELDMLNEKFEKLKNMYAGVED 129
E+ E ++E E EG + KE+ E KY + + ++ A+ + + ++ E+ K+M
Sbjct: 28 EQQGEEKQEASEKEGEI--KEDFELKYQEMREQYLRVHADFENVKKRLERDKSM-----A 80
Query: 130 FEKRQKNIKEQIVKTNPKVLGAPSNEVE---ELAFLERIEKGMQEFN 173
E + I ++ +LGA + VE E A + +E M++ +
Sbjct: 81 LEYAYEKIALDLLPVIDALLGAHKSAVEVDKESALTKGLELTMEKLH 127
>ref|NP_223739.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 511
Score = 27.3 bits (59), Expect = 0.96
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 359 KILKGKQQKPIPSNDGYLKVETFNRWINK-------KGDQEAKLEGKYKKLTEEIN 407
KI+ +K I N+ YL V+TF N D L+G + LT+ +N
Sbjct: 30 KIIASYIEKKINPNERYLSVKTFKLRFNSLDFKAQANDDSTLILKGDFSLLTQSVN 85
>ref|NP_222847.1| putative [Helicobacter pylori J99]
Length = 481
Score = 27.3 bits (59), Expect = 0.96
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 23/144 (15%)
Query: 21 WQKDYDREKLERDNRDLEQCKEDLLAANENLR--------NRIQEWEN-------EKNKL 65
+ D + E++ D Q +E+L +A + LR NR EWEN K K+
Sbjct: 4 YHSDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKI 63
Query: 66 DPRDERIKELEEEKRELEGILAQ-----KENAEQKYNTLSVKN-KQLEAELDMLNEKFEK 119
R + EL E+ G E E YN KN K++ + M +E+
Sbjct: 64 LSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIG- 122
Query: 120 LKNMYAGVEDFEKRQKNIKEQIVK 143
N Y + + ++ ++ E I++
Sbjct: 123 -LNHYLKEKGIQAQETDLGELIIQ 145
>ref|NP_222801.1| putative [Helicobacter pylori J99]
Length = 450
Score = 27.3 bits (59), Expect = 0.96
Identities = 10/33 (30%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 107 EAELDMLNEKFEKLKNMYAGVEDFEKRQKNIKE 139
+ E + + +++E K ++ G+E+F+K++ IKE
Sbjct: 105 DEECEFMKKRYESFKEIFVGLEEFDKQK--IKE 135
>ref|NP_223590.1| putative [Helicobacter pylori J99]
Length = 274
Score = 26.9 bits (58), Expect = 1.3
Identities = 20/58 (34%), Positives = 29/58 (49%), Gaps = 1/58 (1%)
Query: 22 QKDYDREK-LERDNRDLEQCKEDLLAANENLRNRIQEWENEKNKLDPRDERIKELEEE 78
+KD D E L+ + +D +Q E+ N N EWEN K + R+E I E +E
Sbjct: 211 KKDKDPEVWLKEEYKDNQQAIEEYKKRNYIDPNLRLEWENIKEFREKREEAIIEKLKE 268
>ref|NP_223516.1| putative [Helicobacter pylori J99]
Length = 218
Score = 26.9 bits (58), Expect = 1.3
Identities = 22/123 (17%), Positives = 55/123 (43%), Gaps = 3/123 (2%)
Query: 391 QEAKLEGKYKKLTEEINERLDACGRSIGHRVWQSMSTYMHNHPLVLHASDKNKALQF--- 447
Q+ K E +++T+ NE L++ + + ++ +++ AS++N A +F
Sbjct: 55 QDYKHEQTRERITQIYNEVLESPNNIALQKRLKEVAPELYDLYQFARASERNDANEFKRL 114
Query: 448 AYEECLVLKIFPKLRGVQTRNNQHLTKIQDLLKDFSVSSDFKQAMENDFKEFVFNSTNYL 507
+ ++K F K +++L + +LK+ S + E + K+ + + L
Sbjct: 115 SQSSNEIVKAFAKYSYASLSRDKNLLEKSPILKEMSALQEVNLLYEENSKDAIKKAHQSL 174
Query: 508 NNV 510
+ +
Sbjct: 175 STI 177
>ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 454
Score = 26.9 bits (58), Expect = 1.3
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 103 NKQLEAELDMLNEKFEKLKNMYAGVEDFEKRQKNIKEQIV-KTNPKVL 149
N +L EL+ ++++ +NM D + +K+ KE++ K PK L
Sbjct: 191 NTELNTELNARKKQYQYYQNMLLDFNDINQSRKDAKERLAQKPYPKRL 238
>ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori
J99]
Length = 606
Score = 26.6 bits (57), Expect = 1.6
Identities = 20/73 (27%), Positives = 36/73 (48%), Gaps = 4/73 (5%)
Query: 11 KNRELNKKIDWQKDYDREKLERDNRDLEQCKEDLLA----ANENLRNRIQEWENEKNKLD 66
K N K QK +K E +++ +E L A+E L++ I+E + +++
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181
Query: 67 PRDERIKELEEEK 79
++RIKE+E K
Sbjct: 182 EINKRIKEVENNK 194
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 26.6 bits (57), Expect = 1.6
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 58 WENEKNKLDPRDERIKELEEEKRELEGI-LAQKENAEQKYNTLSVKNKQLEAELDMLNEK 116
W K E+I E EE++ + + L KE+ E K L+ K K+++ + +L +K
Sbjct: 69 WNLSKEFPQEYREKIFECVEEEKHKQALNLINKEDTEDK-EELAKKIKEIKEKAKVLRQK 127
Query: 117 F 117
F
Sbjct: 128 F 128
>ref|NP_223007.1| DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN [Helicobacter pylori
J99]
Length = 268
Score = 26.6 bits (57), Expect = 1.6
Identities = 21/88 (23%), Positives = 38/88 (42%), Gaps = 15/88 (17%)
Query: 155 EVEELAFLERIEKGMQEFNVFYPKRLLYMFHTALKSTSLSPLSVLSGVSGTGKSELPKLY 214
E++EL I++G+ F PKR+++ + + + + G SG GKS K+
Sbjct: 5 EIKELKKSYAIDRGL-----FKPKRVIHALNGISFEVEQNEVLSIVGESGCGKSTTAKIL 59
Query: 215 ----------VHFGGLNFLSIAVQPTWD 232
++F G L + Q +D
Sbjct: 60 AGIERQDSGAIYFNGKRHLHFSKQDWFD 87
>ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99]
Length = 620
Score = 26.6 bits (57), Expect = 1.6
Identities = 28/102 (27%), Positives = 47/102 (45%), Gaps = 24/102 (23%)
Query: 11 KNRELNKKIDWQKDYDREKLERDN----------RDLEQCKEDLLAANENLRNRIQEW-- 58
K+ EL+K+ D +K +E +E N + L++ K +L NEN N IQ
Sbjct: 511 KDAELHKEEDARK---KEVIEARNHADSLAHQTQKSLDEHKTNL---NENDANEIQNAIN 564
Query: 59 ------ENEKNKLDPRDERIKELEEEKRELEGILAQKENAEQ 94
+N+ +++ K L + ++L +A K NAEQ
Sbjct: 565 ALKDCIKNDNATKAELEDKTKALTQAAQKLGEAMANKNNAEQ 606
>ref|NP_222760.1| GDP-D-mannose dehydratase [Helicobacter pylori J99]
Length = 381
Score = 26.6 bits (57), Expect = 1.6
Identities = 10/30 (33%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 17 KKIDWQKDYDREKLERD--NRDLEQCKEDL 44
K++ W ++YD ++L +D DL++C+++L
Sbjct: 338 KELGWVREYDLKELVKDMLEYDLKECQKNL 367
>ref|NP_224149.1| putative [Helicobacter pylori J99]
Length = 293
Score = 26.2 bits (56), Expect = 2.1
Identities = 18/61 (29%), Positives = 27/61 (43%), Gaps = 7/61 (11%)
Query: 66 DPRDERIKELEEEKRELEGILAQKENAEQKYNTLSVKNKQLEAELDMLNEKFEKLKNMYA 125
DP + +K+ EE+REL TL K +A LN+ F++ K +Y
Sbjct: 188 DPSSQWVKDFSEEEREL-------YTHSLANLTLLGGTKNTKALSQALNQDFKEKKEIYM 240
Query: 126 G 126
G
Sbjct: 241 G 241
>ref|NP_223285.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE [Helicobacter pylori J99]
Length = 449
Score = 26.2 bits (56), Expect = 2.1
Identities = 22/90 (24%), Positives = 39/90 (42%), Gaps = 11/90 (12%)
Query: 234 PESLMGYFHAIENKFDATEFLRFFIQTTLSNNEEPYGLKEAMSIVLLDEMNLAHIE--LY 291
PE L Y H +E F A ++ Q + E+P+ + ++L++ ++ +I+ L
Sbjct: 188 PEHLEHYDHDLERFFFAYKYFLDHAQKRVIYKEDPFLKNYSKDAIVLEKKDIYNIQYILK 247
Query: 292 FAEFLSKLEIKCSQETNISIKLGTGLTWEL 321
E + E+K LG L W L
Sbjct: 248 DGEPYTSFELK---------NLGAFLVWGL 268
>ref|NP_223204.1| cag island protein [Helicobacter pylori J99]
Length = 306
Score = 26.2 bits (56), Expect = 2.1
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 11/112 (9%)
Query: 9 RQKNRELNKKI-DWQKDYDREKLERDNRDLEQCKEDLLAANENLRNRIQEWENEKNKLDP 67
R ++E+ K+ ++ + REKL D +EQ ++++ A + + +Q K
Sbjct: 51 RHDDKEITKEEKEFATNALREKLRNDRARVEQIQKNIEAFEKKNNSSVQ-------KKAA 103
Query: 68 RDERIKELEEEKRELEGILAQKENAEQKYNTLSVKNKQLEAELDMLNEKFEK 119
+ ++EL E L N T S K+ + ++ +NE F K
Sbjct: 104 KHRGLQELNEIN---ANPLNDNPNGNSSTETKSNKDDNFDEMINKVNESFVK 152
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 26.2 bits (56), Expect = 2.1
Identities = 20/81 (24%), Positives = 36/81 (43%), Gaps = 1/81 (1%)
Query: 86 LAQKENAEQKYNTLSVKNKQLEAELDMLNEKFE-KLKNMYAGVEDFEKRQKNIKEQIVKT 144
L K N + ++K++E L L+E + L+ AG DF +N K+ +
Sbjct: 142 LLDKNNDFIYQQRILTESKEIEEALKHLHEYLKVNLQEKLAGFRDFVHYNENAKDSLPLK 201
Query: 145 NPKVLGAPSNEVEELAFLERI 165
+ G + + L +LE+I
Sbjct: 202 ALFLSGVDALSKDALYYLEKI 222
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 25.8 bits (55), Expect = 2.8
Identities = 39/167 (23%), Positives = 74/167 (43%), Gaps = 21/167 (12%)
Query: 12 NRELNKKIDWQKDYDREKLERDNRDLEQCKEDLLAANENLRNRIQEWENEKNKLDPRDER 71
N + N + K+ +EK +++ E+ K++ + + + K K +P+ +
Sbjct: 63 NTKTNAESAKPKEEPKEKPKKEEPKKEEPKKET-KPKPKPKPKPKPKPKPKPKPEPKPKP 121
Query: 72 IKELEEEKRELEGILAQKENAEQKYNTLSVKNKQLEAELDMLNEKFEKLKNMYAGVEDFE 131
++EE K+E +KE A+++ SV KQ+ + D++ EK ++ E+
Sbjct: 122 EPKVEEPKKEEPKEEPKKEEAKEEAKEKSVP-KQVTTK-DIVKEKDKQ--------EESN 171
Query: 132 KRQKNIKEQIVKTNPKVLGAPSNEVEELAFLERIEKGMQEFNVFYPK 178
K + + NP V SNE FL +I+ + N YPK
Sbjct: 172 KTSEGATSEAQAYNPGV----SNE-----FLMKIQTAISSKN-RYPK 208
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 25.8 bits (55), Expect = 2.8
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 22 QKDYDREKLERDNRDLEQCKEDLLAANENLRNRIQEWENEKNKLDPRDERIKELEEEKRE 81
Q D + LE+D ++Q NE + Q+ E + + DE E+E
Sbjct: 498 QIQQDEKALEKDLAQIKQLANSTTGFNEQAFTQAQKQEQQDEQALQNDENAFNTEQE--G 555
Query: 82 LEGILAQKENAEQKYN 97
LE +A ++A N
Sbjct: 556 LEQAIANAKHANPTPN 571
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 25.8 bits (55), Expect = 2.8
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 20 DWQKDYDREKLERDNRDL-EQCKEDLLAANENLRN----RIQEWENEKNKLDPRDERIKE 74
D++K R++++++ + E+ +D+ + E+ +N I+E NKL ER+K
Sbjct: 283 DYKKSQQRKEVDKNLHQICEKIVQDVKSRIESYKNGALGMIEELNAGFNKLVDHYERMKR 342
Query: 75 LEEEKRELEGILA 87
EE E G ++
Sbjct: 343 QLEEAHEKLGYIS 355
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 25.8 bits (55), Expect = 2.8
Identities = 19/85 (22%), Positives = 41/85 (47%), Gaps = 3/85 (3%)
Query: 14 ELNKKIDWQKDYDREKLERD-NRDLEQCKEDLLAANENLRNR--IQEWENEKNKLDPRDE 70
E+NK+++ K+ +R+K + D + +++ L + N R + ++ N+K + ++
Sbjct: 50 EVNKRLEAMKEEERQKYKADFKKAMDKNLASLSQEDRNKRKKEILEVIANKKKTMTMKEY 109
Query: 71 RIKELEEEKRELEGILAQKENAEQK 95
R + L+ EG E QK
Sbjct: 110 REEGLDLHDCACEGPFHDHEKKGQK 134
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 25.8 bits (55), Expect = 2.8
Identities = 21/64 (32%), Positives = 35/64 (53%), Gaps = 7/64 (10%)
Query: 69 DERIKELEEEKRELEGILAQKENAEQKYNTLSVKNKQLEAELDMLNEKFEKLKNMYAGVE 128
+E IK E+K ++E + +K L KNK LE ELD FE+L+N+ A ++
Sbjct: 495 EEIIKYANEKKTQVEEAFLKVAEFLEKVEKLHEKNK-LE-ELD-----FEELENLSAEID 547
Query: 129 DFEK 132
+ ++
Sbjct: 548 NVKE 551
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 25.4 bits (54), Expect = 3.6
Identities = 17/63 (26%), Positives = 36/63 (56%), Gaps = 7/63 (11%)
Query: 70 ERIKELEEEKRELEGILAQKENAEQKYNTLSV----KNKQLEAELDMLN---EKFEKLKN 122
++ K +E++K+E ++ ENA+ K L++ K + L+ L+ +N ++ EK+
Sbjct: 303 KQAKLVEQKKKESLAFKSEVENAKNKTRHLALKLLKKLETLQKNLESINKIIKQNEKIAQ 362
Query: 123 MYA 125
+YA
Sbjct: 363 IYA 365
>ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori
J99]
Length = 619
Score = 25.4 bits (54), Expect = 3.6
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 187 ALKSTSLSPLSVLSGVSGTGKSELPKLYVH 216
ALK P S+L G +G+GK+E +Y+H
Sbjct: 118 ALKELQKHPASLLFGDTGSGKTE---IYMH 144
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 25.4 bits (54), Expect = 3.6
Identities = 18/68 (26%), Positives = 34/68 (49%), Gaps = 7/68 (10%)
Query: 75 LEEEKRELEGILAQKENAEQKYNTLSVKNKQLEAELDMLNEKFEKLKNMYAG-VEDFEKR 133
++E++ +L + KE+AE+ TL + ++ E N LKN+ A + K
Sbjct: 1 MKEQEWDLSALFENKESAEEFLKTLQTEVQEFE------NAYQNNLKNLDAAKFANTLKH 54
Query: 134 QKNIKEQI 141
+N+ E+I
Sbjct: 55 YENLSEKI 62
>ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter pylori J99]
Length = 336
Score = 25.4 bits (54), Expect = 3.6
Identities = 14/48 (29%), Positives = 25/48 (51%), Gaps = 4/48 (8%)
Query: 474 KIQDLLKDFSVSSDFKQAME----NDFKEFVFNSTNYLNNVEYEKLLK 517
K+ +LL +S+ ++F E + + N +Y++ V Y KLLK
Sbjct: 2 KLSELLSAYSIETEFSNDFEVHALAELDKATPNDISYIDQVCYLKLLK 49
>ref|NP_223919.1| ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 335
Score = 25.0 bits (53), Expect = 4.8
Identities = 15/52 (28%), Positives = 24/52 (45%)
Query: 3 DETNALRQKNRELNKKIDWQKDYDREKLERDNRDLEQCKEDLLAANENLRNR 54
D T+A KN E+ + KD+D + +E KE + A + L N+
Sbjct: 229 DITHACELKNNEILEYDLSAKDFDLPPYDLKELQIENAKESVQACLDILENK 280
>ref|NP_223066.1| putative [Helicobacter pylori J99]
Length = 167
Score = 25.0 bits (53), Expect = 4.8
Identities = 10/21 (47%), Positives = 15/21 (70%)
Query: 386 NKKGDQEAKLEGKYKKLTEEI 406
+ KG +++ E YKKLTEE+
Sbjct: 117 DSKGKIKSRYEENYKKLTEEV 137
>ref|NP_224023.1| putative [Helicobacter pylori J99]
Length = 243
Score = 24.6 bits (52), Expect = 6.2
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 59 ENEKNKLD-PRDERIKELEEEKRELEGILAQKENAEQKY-NTLSVKNKQLEAELDMLNEK 116
E +KN+ PR + ++E+E+RE+ +K+ ++Q Y L + + + D + +K
Sbjct: 19 ERKKNRYGFPRIFDVADIEQEEREVIEWREKKKASKQSYKQNLQINKIANDLKRDKIVDK 78
Query: 117 FEKLKNMYAGVEDFEKRQKNIKEQIVK 143
L + A +E K++ +Q+ K
Sbjct: 79 RTILSVIDADIERGFIPPKDLLKQLEK 105
>ref|NP_223835.1| ELONGATION FACTOR G (EF-G) [Helicobacter pylori J99]
Length = 692
Score = 24.6 bits (52), Expect = 6.2
Identities = 12/37 (32%), Positives = 20/37 (53%)
Query: 90 ENAEQKYNTLSVKNKQLEAELDMLNEKFEKLKNMYAG 126
E+ YN+ K +++ L M + K E +K +YAG
Sbjct: 336 ESGSYVYNSTKDKKERVGRLLKMHSNKREDIKEVYAG 372
>ref|NP_223436.1| putative [Helicobacter pylori J99]
Length = 429
Score = 24.6 bits (52), Expect = 6.2
Identities = 17/52 (32%), Positives = 26/52 (49%), Gaps = 3/52 (5%)
Query: 45 LAANENLRNR---IQEWENEKNKLDPRDERIKELEEEKRELEGILAQKENAE 93
L A N RN IQ +++++ + +E KE+E+EK L KE E
Sbjct: 130 LLAYLNTRNNDFNIQVFDSDEESPEKLEETYKEIEKEKFPFIIALLTKEGVE 181
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 24.6 bits (52), Expect = 6.2
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 37 LEQCKEDLLAANENLRNRIQEWENEKNKLDPRDERIKELEEEKRELEGILAQKENAEQKY 96
LE+ KE + A + + E E ++ + E K LEE K+ ++ L A+ +
Sbjct: 828 LEEAKESVKAYKDCVSRARNEKEKQECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNE- 886
Query: 97 NTLSVKNKQLEAELDMLNEK-FEKLKNMYAGVEDFEKRQKNIKEQ 140
+ K+ E L K E+ K +D R +N KE+
Sbjct: 887 ----AERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEK 927
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 24.6 bits (52), Expect = 6.2
Identities = 68/299 (22%), Positives = 115/299 (37%), Gaps = 43/299 (14%)
Query: 73 KELEEEKRELEGILAQKENAEQKYNTLSVKNKQLEAELDMLNEKFEKLKNMYAGVEDFEK 132
K+ EE+KRE L QK E K S Q ++ L E EK + + +
Sbjct: 89 KQYEEDKRETRKYLYQK--GELKLEVAS----QNQSFFKTLLEVAEKGNISHCEKDADTE 142
Query: 133 RQKNIKEQIVKTNPKVLGAPSNEVEELA------FLERIE-----KGMQEFNVFYPKRLL 181
++N+ E + K+ EV E L R+E K ++ F + +
Sbjct: 143 GKQNLFEVLKAILDKISKLSEEEVNERLEVLLKMVLMRLEEPDPGKAIRTFQSVNDRGVP 202
Query: 182 YMFHTALKSTSLSPLSVLSGVSGTGKSELPKLYV-HFGGL----------NFLSIAVQPT 230
+ LKS L S GK L + + HFG + N +S P
Sbjct: 203 LLLLDKLKSL----LIYYSNTFCDGKRGLDQFIIDHFGEIFKIFAKIKKSNHISSVGGPE 258
Query: 231 WDSPESLMGYFHAIENKFDATEFLRFFIQTTLSNNEE-PYGLKEAMSIVLLD--EMNLAH 287
++ + +HA +FD EFL + +T + E+ LKE L + ++
Sbjct: 259 FNEGDIFR--YHAGSQRFDGIEFLGHYRTSTDNTYEKLKAELKEIKKSKLKSFIQSYVSD 316
Query: 288 IELYFAEFLSKLEIKCSQETNISIKLGTGLTWELPLGDNLLFVGTMN---EDESTKMLS 343
++ ++ FL L + T + + L + PL N L +N +DE+ K+ +
Sbjct: 317 LKNFYQAFLDLLSEIDTNPTTLKVMLINRIN---PLFFNSLIRLKINNELDDETLKLFA 372
>ref|NP_222723.1| TRANSCRIPTION TERMINATION [Helicobacter pylori J99]
Length = 138
Score = 24.6 bits (52), Expect = 6.2
Identities = 28/114 (24%), Positives = 46/114 (39%), Gaps = 8/114 (7%)
Query: 89 KENAEQKYNTLSVKNKQLEAELDMLNEKFEKLKNMYAGVE------DFEKRQKNIKEQIV 142
K+ A +KN QL L + N EK+ + A +E DF KR ++++ I+
Sbjct: 26 KKIASSMLEEKKIKNNQLAFALSLFNGVLEKINEIDALIEPHLKDWDF-KRLGSMEKAIL 84
Query: 143 KTNPKVLGAPSNEVEELAFLERIEKGMQEFNVFYPKRLLYMFHTALKSTSLSPL 196
+ +G + + E IE G PK L + + K + PL
Sbjct: 85 RLGAYEIGFTPTQ-NPIIINECIELGKLYAEPNTPKFLNAILDSLSKKLAQKPL 137
>ref|NP_223860.1| putative [Helicobacter pylori J99]
Length = 234
Score = 24.3 bits (51), Expect = 8.1
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 460 KLRGVQTRNNQHLTKIQDLLKDFSVSSDFKQAMENDFKEFVFNSTNYLNNVE 511
+LR R +D + +++ K + FK + N N++NN+E
Sbjct: 106 ELRDTILRLENDTRYFKDFTQVLALNYGSKNELSRAFKSLLENPPNHINNIE 157
>ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pylori J99]
Length = 552
Score = 24.3 bits (51), Expect = 8.1
Identities = 8/26 (30%), Positives = 16/26 (60%)
Query: 428 YMHNHPLVLHASDKNKALQFAYEECL 453
Y N P+V+H S+K + +Y++ +
Sbjct: 73 YQKNDPIVVHVSEKGEHPSVSYKKAI 98
>ref|NP_222860.1| putative [Helicobacter pylori J99]
Length = 255
Score = 24.3 bits (51), Expect = 8.1
Identities = 12/39 (30%), Positives = 20/39 (50%), Gaps = 2/39 (5%)
Query: 161 FLERIEKGMQEFNVFYPKRLLYMFHTALKSTSLSPLSVL 199
F+ + G FN +L++ HTALK+ +L P +
Sbjct: 111 FVASVRLGYYLFNA--QSSVLFILHTALKTFALKPTKTI 147
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.133 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 580,986
Number of Sequences: 1491
Number of extensions: 29188
Number of successful extensions: 196
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 105
length of query: 518
length of database: 494,079
effective HSP length: 82
effective length of query: 436
effective length of database: 371,817
effective search space: 162112212
effective search space used: 162112212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)