BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645081|ref|NP_207251.1| hypothetical protein
[Helicobacter pylori 26695]
(1021 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 36 0.006
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 35 0.010
ref|NP_222912.1| putative [Helicobacter pylori J99] 30 0.24
ref|NP_223645.1| putative [Helicobacter pylori J99] 30 0.31
ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 30 0.31
ref|NP_223760.1| putative [Helicobacter pylori J99] 30 0.41
ref|NP_224003.1| putative [Helicobacter pylori J99] 29 0.53
ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter p... 29 0.69
ref|NP_223629.1| putative [Helicobacter pylori J99] 29 0.69
ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEI... 28 0.90
ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pyl... 28 0.90
ref|NP_223393.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter ... 28 1.5
ref|NP_224013.1| putative ENDONUCLEASE [Helicobacter pylori... 27 2.0
ref|NP_223493.1| putative [Helicobacter pylori J99] 27 2.0
ref|NP_223160.1| PUTATIVE POTASSIUM CHANNEL PROTEIN [Helico... 27 2.0
ref|NP_224119.1| putative ferredoxin-like protein [Helicoba... 27 2.6
ref|NP_222967.1| putative [Helicobacter pylori J99] 27 2.6
ref|NP_223749.1| putative lipopolysaccharide biosynthesis p... 27 3.4
ref|NP_223748.1| putative lipopolysaccharide biosynthesis p... 27 3.4
ref|NP_223656.1| putative [Helicobacter pylori J99] 27 3.4
ref|NP_223651.1| putative [Helicobacter pylori J99] 27 3.4
ref|NP_223375.1| putative [Helicobacter pylori J99] 27 3.4
ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter... 27 3.4
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 26 4.5
ref|NP_223384.1| putative [Helicobacter pylori J99] 26 4.5
ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Heli... 26 4.5
ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (... 26 4.5
ref|NP_224188.1| putative [Helicobacter pylori J99] 26 5.8
ref|NP_224030.1| putative [Helicobacter pylori J99] 26 5.8
ref|NP_223560.1| putative [Helicobacter pylori J99] 26 5.8
ref|NP_223436.1| putative [Helicobacter pylori J99] 26 5.8
ref|NP_223418.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helico... 26 5.8
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 26 5.8
ref|NP_223220.1| putative [Helicobacter pylori J99] 26 5.8
ref|NP_222993.1| putative [Helicobacter pylori J99] 26 5.8
ref|NP_224040.1| DIMETHYLADENOSINE TRANSFERASE [Helicobacte... 25 7.6
ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylor... 25 7.6
ref|NP_223802.1| putative PYRROLINE-5-CARBOXYLATE REDUCTASE... 25 7.6
ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Heli... 25 7.6
ref|NP_223990.1| putative [Helicobacter pylori J99] 25 10.0
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 25 10.0
ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter p... 25 10.0
ref|NP_223506.1| putative [Helicobacter pylori J99] 25 10.0
ref|NP_223383.1| putative [Helicobacter pylori J99] 25 10.0
ref|NP_223219.1| putative [Helicobacter pylori J99] 25 10.0
ref|NP_223086.1| 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANS... 25 10.0
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 25 10.0
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 35.8 bits (81), Expect = 0.006
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 15/137 (10%)
Query: 851 NLPSTDFLSRCLGSLEKDFQKTIFKKLKVTNLKTLSIVARASWNNE-KFLENLM---AQT 906
N + + CL L KD QK + K V L V++A E K E L+ A+
Sbjct: 693 NAKTDEERKECLKDLPKDLQKKVLAKESVR--VYLDCVSKAKNEAERKECEKLLTPEARK 750
Query: 907 SLEQQKDFLKRIEECLKNPESFYFSSACELLLAFLSYRNAKRELELIPESEKTMR-LLDS 965
LE+ K +K ++C+ + CE LL +L+ ES+K+++ LD
Sbjct: 751 LLEEAKKSVKAYKDCVLRARNEKEKQECEKLL-------TPEARKLLEESKKSVKAYLDC 803
Query: 966 IDKAIEKETEIKSFVKL 982
+ KA + E E K KL
Sbjct: 804 VSKA-KNEAERKECEKL 819
Score = 33.9 bits (76), Expect = 0.021
Identities = 143/697 (20%), Positives = 256/697 (36%), Gaps = 126/697 (18%)
Query: 333 KQENNTYINANGAKGKIDEKGYLANALKNYDETLVEAF-MRDFKERYKIEKLYYLLDDNI 391
+QE N + KG + +K N N TL + + +++ + Y + +
Sbjct: 278 RQEYNRLLKERNEKGNMIDKNLFFNDDPN--RTLYNYLNIAEIEDKNPLRAFYECISNGG 335
Query: 392 KNFEFAKIKHKISLYFKDAKFYP--KSVALGFSSLFENKLKKNERLRYNSVDLVVKENHK 449
E K+ KD K K ++ +N + ER++ +DL+ EN K
Sbjct: 336 NYEECLKL-------IKDKKLQDQMKKTLEAYNDCIKNAKTEEERIK--CLDLIKDENLK 386
Query: 450 SKTFN--------DCGLVLERQKSDDSKE--FLILQDSFIKKALKNFKRALGLEKEGFIL 499
N DC L+ K+D+ ++ ++ D I++ F++ L L+KE
Sbjct: 387 KSLLNQQKVQVALDC---LKNAKTDEERKECLKLINDPEIRE---KFRKELELQKE-LQE 439
Query: 500 YKECLPKLSMEVVKDGRFKNFEIIKDKTILGDKETLEIETPFIIPKGRESFALPLILNEE 559
YK+C+ E K+ K KE +E + AL + N
Sbjct: 440 YKDCIKNAKTEAEKNECLKGLS----------KEAIE---------RLKQQALDCLKNA- 479
Query: 560 KIAYQGKITSKDFPLENDEEYKLTLTY----DIGTEFNYVLEFKPVNNDLKPI---VMEW 612
K + K K+ P + +E ++ D + E + L P ++E
Sbjct: 480 KTDEERKECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKQECEKLLTPEAKKLLEN 539
Query: 613 QRIDRVELPTPDSIKKPSIDELKNDFNPKRGKSSDLFEWALEQLETLKDLNSPPRFVLEK 672
Q +D ++ D +K + L D SD+ A E L+ KD S + EK
Sbjct: 540 QALDCLKNAKTDEERKECLKNLPKDLQ------SDIL--AKESLKAYKDCASQAKTEAEK 591
Query: 673 KLECGGISIIGEDRNNELFYIMETNGKKVFCHSRQCKGSVNKDELSLGARVCLEVGPDKN 732
K EC ++ + L + + K Q K K E ++ K
Sbjct: 592 K-ECE--KLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECE---KLLTPEAKKKL 645
Query: 733 DHGKYRGKIYGLEKNREIVLLNTAKNSYQRKPLDEKIKHRIEALKRIKYPCLKIFSHYML 792
+ K + Y + ++ AKN +RK ++ + EA K ++ L +
Sbjct: 646 EEAKKSVRAY-------LDCVSKAKNEAERKECEKLLTP--EAKKLLENQALDCLKNAKT 696
Query: 793 EELETLNPEFATPFKEYLKRLEEYYFDPQTDRDFKKGLLDFFSRLNDSIPAKLQQEFINL 852
+E KE LK L + ++ + LD S+ + K ++ +
Sbjct: 697 DEER----------KECLKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTP 746
Query: 853 PSTDFLSRCLGSL------------EKDFQ----------KTIFKKLKVTNLKTLSIVAR 890
+ L S+ EK+ Q + + ++ K + L V++
Sbjct: 747 EARKLLEEAKKSVKAYKDCVLRARNEKEKQECEKLLTPEARKLLEESKKSVKAYLDCVSK 806
Query: 891 ASWNNE-KFLENLM---AQTSLEQQKDFLKRIEECLKNPESFYFSSACELLLAFLSYRNA 946
A E K E L+ A+ LE+ K+ +K ++C+ + CE LL
Sbjct: 807 AKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQECEKLL-------T 859
Query: 947 KRELELIPESEKTMR-LLDSIDKAIEKETEIKSFVKL 982
+L+ ES+K+++ LD + KA + E E K KL
Sbjct: 860 PEARKLLEESKKSVKAYLDCVSKA-KNEAERKECEKL 895
Score = 32.3 bits (72), Expect = 0.062
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 860 RCLGSLEKDFQKTIFKKLKVTNLKTLSIVARASWNNE-KFLENLM---AQTSLEQQKDFL 915
RC+ L KD QK + K V L V++A E K E L+ A+ LE+ K+ +
Sbjct: 961 RCVKDLPKDLQKKVLAKESVRVY--LDCVSKAKNEAERKECEKLLTPEARKLLEEAKESV 1018
Query: 916 KRIEECLKNPESFYFSSACELLLAFLSYRNAKRELELIPESEKTMR-LLDSIDKA-IEKE 973
K ++C+ + CE LL A++ LE E +K+++ LD + +A EKE
Sbjct: 1019 KAYKDCVSRARNEKEKQECEKLLT----PEARKLLE--QEVKKSVKAYLDCVSRARNEKE 1072
Query: 974 TE 975
+
Sbjct: 1073 KQ 1074
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 35.0 bits (79), Expect = 0.010
Identities = 41/202 (20%), Positives = 91/202 (44%), Gaps = 24/202 (11%)
Query: 776 LKRIKYPCLKIFSHYM--LEELETLNPEFATPFKEYLKRLEEYYFDPQTDRDFKKGLLDF 833
LK+ K ++F Y+ + E ++ + + +E+Y P+ L ++
Sbjct: 396 LKQDKKTSQEVFGDYIHCYKFNEAVSDKVVLDLNYEARSVEQYVSSPEK-------LDEY 448
Query: 834 FS----RLNDSIPAKLQQEFINLPSTDFLSRCLGSLEKDFQKTIFKKLKVTNLK-TLSIV 888
F LN++ +L+++++NL L + +D + K +++N K +V
Sbjct: 449 FELKTQNLNEAAKTELKKKWVNLQKVFSTKDRLEHIVQDIVLDMAKLPRLSNGKGNAMLV 508
Query: 889 ARASWNNEKFLENLMAQTSLEQQKDFLKRIE-------ECLKNP--ESFYFSSACELLLA 939
A + +N ++ E L +T L+ + + E +C N ES+ + + C++L
Sbjct: 509 AESVYNACRYFE-LFLETELKDKVAVITSYEPNIADLKDCGSNESEESYKYRAYCKMLQN 567
Query: 940 FLSYRNAKRELELIPESEKTMR 961
F + ++ K+ L I E E+ ++
Sbjct: 568 FFNEKDEKKALNKIKEFEEEVK 589
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 30.4 bits (67), Expect = 0.24
Identities = 62/260 (23%), Positives = 109/260 (41%), Gaps = 33/260 (12%)
Query: 37 RDLFSVLENIVQFDYEKKPYKDDLYFLC-KFVEPALKAIFSNLN----TNIYRKHLKMPL 91
++ + + I++++ K YK + +F+ K + L I+S+L + I + ++ L
Sbjct: 114 KNFYQCIREIIKYNAPNKEYKPNQFFIIGKGKQKQLAKIYSHLKELSASEIKPQDMEDIL 173
Query: 92 EKAREFDAKC-ALDLAK-RPGRSLKEKLCDNKVLSVKRYVNANTHENRFLKRFIKELLRI 149
+K E D D K P +K+ + K + K +N N F ++F + I
Sbjct: 174 KKLEELDKIFKTTDFTKFTPKTEIKDII---KEIDEKYPINEN-----FKRQFNEFESNI 225
Query: 150 IHWREI--EFQQVFEELIFSITSFLKNGVAQQIDEKQAI--IPNNLLHFDKHYKRIFKAH 205
EI +F++ E LI I + KN + + + I + N+ K+Y +
Sbjct: 226 EKHDEIKKDFERNKESLIREIENHCKNECNSEEEPEYKINDLLKNIQQICKNYIESHAVN 285
Query: 206 DWLYDGVGSLM---NLDQIFYLECLYQAQFYTSKNIEP---------TLIRNEQDLYALI 253
D D + S+M L QI L ++ S EP ++ NE +Y
Sbjct: 286 DVSKD-IKSMMCQFYLKQIDLLVNSEIVRYRYSNLFEPIQRSLWESIKILDNESGIYLFP 344
Query: 254 KNSFPIKDLSFEKMRLKAKE 273
KN IKD FE + K K+
Sbjct: 345 KNIGEIKD-KFEANKEKFKQ 363
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 30.0 bits (66), Expect = 0.31
Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Query: 479 IKKALKNFKRALGLEKEGFILYKECLPKLSMEVVKDGRFKNFEIIKDKTILGDKETLEIE 538
+K+ LK K A+ EG + K+ E+I K + + I
Sbjct: 1123 VKRKLKEVKEAINQGVEGL----------------EANVKDLELIIPKDLKATEIMANIN 1166
Query: 539 TPFIIPKGRESFALPLILNEEKIAYQGKITSKDFPLENDEE----YKLTLTYDIGTEFNY 594
+P+I + E F + L N + Y K+T D+ L N +E L+ Y++ N
Sbjct: 1167 SPWIPTQYLEEFLMELSANHYEKQYGDKMT--DYQLSNLKEDIKIEHLSGAYEVFVRNNE 1224
Query: 595 VLEFKPVNNDLKP 607
+ E + + KP
Sbjct: 1225 LNELYGIRHKDKP 1237
>ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 528
Score = 30.0 bits (66), Expect = 0.31
Identities = 15/39 (38%), Positives = 22/39 (55%)
Query: 456 CGLVLERQKSDDSKEFLILQDSFIKKALKNFKRALGLEK 494
C LVL++ K DD+ F+ F+K+ KN +A EK
Sbjct: 413 CILVLKKNKKDDTTLFIDASKEFLKEGKKNKLKAHNREK 451
>ref|NP_223760.1| putative [Helicobacter pylori J99]
Length = 127
Score = 29.6 bits (65), Expect = 0.41
Identities = 16/56 (28%), Positives = 28/56 (49%), Gaps = 9/56 (16%)
Query: 608 IVMEWQRIDRVELPTPDSIKKPSIDELKNDFNPKRGKSSDLFEWALEQLETLKDLN 663
+V EWQ+ + + + S+K S+ EL+ D N E ++ +T+K LN
Sbjct: 41 LVYEWQKKQKKDFQSAKSLKFDSVSELEKDLN---------MEVTNDEWDTIKKLN 87
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 29.3 bits (64), Expect = 0.53
Identities = 21/57 (36%), Positives = 28/57 (48%), Gaps = 3/57 (5%)
Query: 354 YLANALKNYDETLVEAFMRDFKERYKIEKLYYLLDDNIKNFEFA--KIKHKISLYFK 408
Y AL N LV A+ RDFKE K +Y + N +FA K+ H + +FK
Sbjct: 50 YQQQALINAFRVLV-AYFRDFKESKKEFYAFYQKHYSFANCDFAKKKLNHLLKSHFK 105
>ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 326
Score = 28.9 bits (63), Expect = 0.69
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 220 QIFYLECLYQAQFYTSKN---IEPTLIRNEQDLYALIKNSFPIKDLSFEKMRLKAKEFFE 276
QIF L L Q+ F+ + I TL + +K S K L FEK +K ++ FE
Sbjct: 172 QIFSL--LEQSVFFETNKERLILKTLNEENKQNDKKLKRSIKEKALYFEKHGVKKEKGFE 229
Query: 277 NELRQPINLDQEIPQLELCKGVYKEMYIDMFS 308
P+ L + I + +L +YID F+
Sbjct: 230 LHHIVPLCLARSIEEFDLLDKWENLIYIDAFN 261
>ref|NP_223629.1| putative [Helicobacter pylori J99]
Length = 487
Score = 28.9 bits (63), Expect = 0.69
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 15/124 (12%)
Query: 807 KEYLKRLEEYYFDPQTDRDFKKGLLDFFSRLNDSIPAKLQQEFINLPS-TDFLSRCLGSL 865
K LK LEEYY + K+G L F + + + L + N + +++ G+
Sbjct: 240 KTDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLNMQKANEKALRSYIALKKGNA 299
Query: 866 E----KDFQK-----TIFKKLKVTNLKTLSIVARASWNNEKFLENLMAQTSLEQQKDFLK 916
+ +DF+K T K+T LK L ++ E F + + + Q KD L+
Sbjct: 300 QNYTTQDFEKNNSPYTAEITQKLTALKPLEVL-----KPEPFKDGFIVVQLVSQIKDELQ 354
Query: 917 RIEE 920
+E
Sbjct: 355 NFDE 358
>ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR [Helicobacter
pylori J99]
Length = 277
Score = 28.5 bits (62), Expect = 0.90
Identities = 18/53 (33%), Positives = 30/53 (55%), Gaps = 3/53 (5%)
Query: 483 LKNFKRALGLEKEGFILYKECLPKLSMEVV-KDGRFKNFEIIKDKTILGDKET 534
+ NF R E+E + + K+++ V+ KDG KN E +KDK ++ +K T
Sbjct: 109 MANFTRTK--EREKVVDFANPYMKVALGVISKDGVIKNIEELKDKELIVNKGT 159
>ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pylori J99]
Length = 552
Score = 28.5 bits (62), Expect = 0.90
Identities = 14/62 (22%), Positives = 29/62 (46%)
Query: 712 VNKDELSLGARVCLEVGPDKNDHGKYRGKIYGLEKNREIVLLNTAKNSYQRKPLDEKIKH 771
+ KDE+ +G + V + + K R ++ LE+ +E L S + L + +K
Sbjct: 491 LKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSDDKMTLGDILKE 550
Query: 772 RI 773
++
Sbjct: 551 KL 552
>ref|NP_223393.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter pylori J99]
Length = 347
Score = 27.7 bits (60), Expect = 1.5
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 328 PLLVKKQENNTYINANGAKGKIDEKGYLANALKNYDETLVEAFMRDFKERYKIEKLYYLL 387
P +VK + + N K + + L +A + E L+E F++ KE Y L
Sbjct: 167 PFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQGVKE-------YNLA 219
Query: 388 DDNI-KNFEFAKIKHKISLYFKDAK------FYPKSVALGFSSLFENKLKKNERLRYNSV 440
I K F F+ ++ F D K K+ S+ E +LK+N + YN +
Sbjct: 220 GCKIKKGFCFSYVEEPNKQEFLDFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDL 279
>ref|NP_224013.1| putative ENDONUCLEASE [Helicobacter pylori J99]
Length = 287
Score = 27.3 bits (59), Expect = 2.0
Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 7/153 (4%)
Query: 851 NLPSTDFLSRCLGSLEKDFQKT-IFKKLKVTNLKTLSIVARASWNNEKFLENLMAQTSLE 909
N S DF S L + ++ T I + K TN ++ +V + N + ++ +
Sbjct: 141 NDASFDFASN---PLRETYRMTNITPEAKNTNRHSVLLVEKEGRNLARKYHQVLVEELTI 197
Query: 910 QQKDFLKRIEECLKNPESFYFSSACELLLAFLSYRNAKRELELIPESEKTMRLLDSIDKA 969
++ + + + P F++ L SY NAK E IP + L +
Sbjct: 198 IKQGYRTFSSKNIAIPSGFWYHYDTSLTD---SYENAKSECFYIPNDNQKYPLQEMRRDC 254
Query: 970 IEKETEIKSFVKLELKNQSFNNIPPLLSALRLY 1002
E E K V KN N +P ++ + Y
Sbjct: 255 KEYERVEKQVVFKNNKNAELNELPKYMNNSKKY 287
>ref|NP_223493.1| putative [Helicobacter pylori J99]
Length = 201
Score = 27.3 bits (59), Expect = 2.0
Identities = 17/55 (30%), Positives = 31/55 (55%), Gaps = 3/55 (5%)
Query: 462 RQKSDDSKEFLILQDSFIKKALKNFKRALGLEKEGFILYKECLPKLSMEVVKDGR 516
R + D+ + ++LQ+S IK + R + + +YK+ L ++SME+ DGR
Sbjct: 139 RVNAQDTVKDMVLQNSVIKTRVNALIRNAEITET---IYKDGLCQVSMELKLDGR 190
>ref|NP_223160.1| PUTATIVE POTASSIUM CHANNEL PROTEIN [Helicobacter pylori J99]
Length = 378
Score = 27.3 bits (59), Expect = 2.0
Identities = 15/61 (24%), Positives = 30/61 (48%), Gaps = 3/61 (4%)
Query: 349 IDEKGYLANALKNYDETLV---EAFMRDFKERYKIEKLYYLLDDNIKNFEFAKIKHKISL 405
I EKG + + D ++ + + ++++ ++ +++ DN NFE IKHK
Sbjct: 122 IKEKGMIYKIARLKDHYVICYHNEYTIELSKQFRSAQIPFVVVDNDPNFEEEAIKHKYPY 181
Query: 406 Y 406
Y
Sbjct: 182 Y 182
>ref|NP_224119.1| putative ferredoxin-like protein [Helicobacter pylori J99]
Length = 458
Score = 26.9 bits (58), Expect = 2.6
Identities = 28/130 (21%), Positives = 51/130 (38%), Gaps = 13/130 (10%)
Query: 144 KELLRIIHWREIEFQQVFEELI--FSITSFLKNGVAQQIDEKQAIIP-NNLLHFDKHYKR 200
++ +R++ + I + V ++ ITSF K + I+ + + + D Y
Sbjct: 307 RQKVRLVRLKTIAYMGVIAVVVALLIITSFKKERMLLDINRNSDLYEIRSSGYVDNDYVF 366
Query: 201 IFKAHDWLYDGVGSLMNLDQIFYLECLYQAQFYTSKNIEPTLIRNEQDLYALIKNSFPIK 260
+F D N D FY + L Q K + P I+ Q + A++ P+K
Sbjct: 367 LFHNTD----------NKDHEFYFKILGQKDIQIKKPLNPIAIKAGQKIKAVVILRKPLK 416
Query: 261 DLSFEKMRLK 270
+ E K
Sbjct: 417 GNATEYKHAK 426
>ref|NP_222967.1| putative [Helicobacter pylori J99]
Length = 172
Score = 26.9 bits (58), Expect = 2.6
Identities = 23/83 (27%), Positives = 37/83 (43%), Gaps = 11/83 (13%)
Query: 370 FMRDFKERYKIEKLYYLLDDNIKNFEFAKIKHKISLYFKDAKFYPKSVAL---GFSSLFE 426
FMR++ E YK +++Y + + HK++ Y K K ++ L GF S+
Sbjct: 17 FMREYPEPYKFLQVFYAQEKE------RFLNHKMNDYIKQNKSKEEASILARQGFVSVIG 70
Query: 427 NKLKKNERLRYNSVDLVVKENHK 449
L+K L D +K N K
Sbjct: 71 RALEKIIELLLK--DFCIKNNVK 91
>ref|NP_223749.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 398
Score = 26.6 bits (57), Expect = 3.4
Identities = 18/53 (33%), Positives = 27/53 (49%), Gaps = 7/53 (13%)
Query: 423 SLFENKLKKNERLRYNSVDLVVKENHKSKTFNDCGLVLERQKSDDSKEFLILQ 475
SL E+ K N+++RY LVV N + KT Q ++ KEF +L+
Sbjct: 36 SLLESIAKANKKIRYTLHALVVGLNEEDKT-------KLNQITEPFKEFAVLE 81
>ref|NP_223748.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 393
Score = 26.6 bits (57), Expect = 3.4
Identities = 18/53 (33%), Positives = 27/53 (49%), Gaps = 7/53 (13%)
Query: 423 SLFENKLKKNERLRYNSVDLVVKENHKSKTFNDCGLVLERQKSDDSKEFLILQ 475
SL E+ K N+++RY LVV N + KT Q ++ KEF +L+
Sbjct: 36 SLLESIAKANKKIRYTLHALVVGLNEEDKT-------KLNQITEPFKEFAVLE 81
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 26.6 bits (57), Expect = 3.4
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 507 LSMEVVKDGRFKNFEIIKDK------TILGDKETLEIETPFIIPKGRESFALPLILNEEK 560
LS E ++ R K FE ++++ ++ ++T + E + K +E +L ++
Sbjct: 71 LSKEFPQEYREKIFECVEEEKHKQALNLINKEDTEDKEE--LAKKIKEIKEKAKVLRQKF 128
Query: 561 IAYQGKITSKDFPLENDEEYKLTLTYDIGTE 591
+A++ K SK+FP + + L +D G E
Sbjct: 129 MAFEMKEHSKEFPNKKQLQTMLENAFDNGAE 159
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 26.6 bits (57), Expect = 3.4
Identities = 62/307 (20%), Positives = 112/307 (36%), Gaps = 50/307 (16%)
Query: 216 MNLDQIFYLECLYQAQFYTSKNIEPTLIRNEQDLYALIKNSFPIKDLSFEKMRLKAKEFF 275
M+L QI LE ++ Q EQ +K K++ K R + K
Sbjct: 1 MDLQQIDELENKFEEQ-------------EEQAQDTPLKQEPSTKEVKIPKKRGRKKSLL 47
Query: 276 ENELRQPINLD------QEIPQLELCKGVYKEMYIDMFSPEPFALLVGNGN--EEKILKL 327
+ + ++ N+ +E+ + L G +KE L N E+K+LK
Sbjct: 48 DEDKKKSFNIAFSPCVIKELNEFLLEFGSFKETRSTFIEEALIRHLKHRKNTQEQKLLKQ 107
Query: 328 PLLVKKQENNTYINANGAKGKIDEKGYLANALKNYDETLVEAFMRDFKERYKIEKLYYLL 387
++ +E N + + Y LK + +TL + + + +EKL +L
Sbjct: 108 LERLQNKEKGIMKTMNLNEFFTHKIIYKDTPLK-FKDTLEQ----EISQASLVEKL--IL 160
Query: 388 DDNIKNFEFAKIKHKISLYFKDAKFYPKSVALGFSSLFENKLKKNERLRYNSVDLVVKEN 447
+ + N FAKI ++ + ++ K + + S + K + Y + E
Sbjct: 161 ANILANMVFAKISNENAPKILISRLMCKFSPIDYESTIPSDFKPIDEEEYEDDLEWLNEE 220
Query: 448 HKSKTFNDCGLVLERQKSDDSKEFLILQDSFIKKALKNFKRALGLEKEGFILYKECLPKL 507
+ + FN L L K D +E E +Y ECL ++
Sbjct: 221 KEDRLFNYY-LFLNGIKESDVEEVF---------------------NESVEIYDECLIEI 258
Query: 508 SMEVVKD 514
+ V+KD
Sbjct: 259 AQNVLKD 265
>ref|NP_223375.1| putative [Helicobacter pylori J99]
Length = 140
Score = 26.6 bits (57), Expect = 3.4
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 30/119 (25%)
Query: 764 PLDEKIKHRIEALKRIKYPCLKIFSHYMLEELETLNPEFATPFKEYLKRLEEYYFDPQTD 823
P +E I +R+E KR+K L+ E A F+ R+ ++
Sbjct: 39 PSNEAIDYRMEVSKRLK----------------ALSAEDAKKFRANFSRIARKNLSKMSE 82
Query: 824 RDFKKGLLDFFSRLNDSIPAKLQQEFINLPSTDF------LSRCLGSLEKDFQKTIFKK 876
DFKK + + + +L+++ L + + +S C G K + + + KK
Sbjct: 83 EDFKK--------MREEVRKELEEKTKGLSAEEIKAKGLNVSVCSGDTRKVWCRAVKKK 133
>ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter pylori J99]
Length = 435
Score = 26.6 bits (57), Expect = 3.4
Identities = 27/123 (21%), Positives = 53/123 (42%), Gaps = 11/123 (8%)
Query: 323 KILKLPLLVKKQENNTYINANGAKGKIDEKGYLANALKNYDETLVEAFMRDFKER----Y 378
K L L++K+ + Y+ K ++ LANA E+L + + D K++ +
Sbjct: 143 KTRMLAQLLQKESDFDYLAKLTLKQELFANTPLANAALGTKESLQKIKLDDLKQQFAKVF 202
Query: 379 KIEKLYYLLDDNIKNFEFAKIKHKISLYFKDAKFYPKSVALGFSSLFENKLKKNERLRYN 438
++ KL +L ++ K+ ++ F P+ A FE KK+E++ Y
Sbjct: 203 ELNKLVVVLGGDL------KVNQTLNRLNNALNFLPQGKAYE-EPYFEASDKKSEKVLYK 255
Query: 439 SVD 441
+
Sbjct: 256 DTE 258
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 26.2 bits (56), Expect = 4.5
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 14/87 (16%)
Query: 467 DSKEFLIL-QDSFIKKALKNFKRALGLEKEGFILYKECLPKLSMEVVKDGRFKNF----- 520
D K+ L L +D IKK KN+ + G + YK+ L + + R+ +F
Sbjct: 141 DCKDLLSLKEDKRIKKFYKNYAKKEGTDSSKPKFYKDLEQFLQEDFQGELRYTHFNLSDD 200
Query: 521 --------EIIKDKTILGDKETLEIET 539
+++ + +L K TL+ T
Sbjct: 201 FKELPLIYQVLSQEVLLKQKRTLDANT 227
>ref|NP_223384.1| putative [Helicobacter pylori J99]
Length = 355
Score = 26.2 bits (56), Expect = 4.5
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 328 PLLVKKQENNTYINANGAKGKIDEKGYLANALKNYDETLVEAFMRDFKERYKIEKLYYLL 387
PL V+ +E +Y DEK YL+ N T+ E FMR + +L+YLL
Sbjct: 145 PLPVRLKEERSYFLG-------DEKHYLSVYKSNEYLTMQENFMRFVFGK----RLFYLL 193
Query: 388 -DDNIKNFEFAKIK 400
D+I N A+++
Sbjct: 194 YPDSINNIIHAELE 207
>ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Helicobacter pylori J99]
Length = 621
Score = 26.2 bits (56), Expect = 4.5
Identities = 17/54 (31%), Positives = 27/54 (49%)
Query: 771 HRIEALKRIKYPCLKIFSHYMLEELETLNPEFATPFKEYLKRLEEYYFDPQTDR 824
+R+ +++ Y L+ + E L+ L TP KE LKRL E +P D+
Sbjct: 450 YRLGLMEQDFYKELEKDKQAIQENLKRLKECVLTPSKEVLKRLNELGENPINDK 503
>ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 343
Score = 26.2 bits (56), Expect = 4.5
Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 17/170 (10%)
Query: 555 ILNEEKIAYQGKITSKDFP-LENDEEYKLTLTYDIGTEFNYVLEFKPVNNDLKPIVMEWQ 613
I NE KI Y + K FP ++ D+ T+ E K L P W
Sbjct: 153 IFNEPKIPYTPQDLEKRFPKIDKDKRRYTTVPIHAPGEVESGECSKAFKGMLPPKGRHW- 211
Query: 614 RIDRVELPTPDSIKKPSIDELKNDFNPKRGKSSDLFEWALEQLETLKDLNSP--PRFVLE 671
R ++ T + K + E N+ NP+ K E ++++ + + P P + E
Sbjct: 212 ---RTDIATLERWDKEGLIEYSNNNNPR--KKIYALEQVGKRVQDIWEFKDPQYPSYPTE 266
Query: 672 KKLECGGISIIGEDRNNELFYIME------TNGKKVFCHSRQCKGSVNKD 715
K + + +I + +N+ +++ T K F R+ G N D
Sbjct: 267 KNAQL--LDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGIDNSD 314
>ref|NP_224188.1| putative [Helicobacter pylori J99]
Length = 333
Score = 25.8 bits (55), Expect = 5.8
Identities = 40/139 (28%), Positives = 62/139 (43%), Gaps = 33/139 (23%)
Query: 466 DDSKEFLILQDS--FIKKALKNFKRALGLE-------------KEGFILYKECLPKLSME 510
D SK+ +Q++ FIK+ LKN K+ G+E + IL K + ++
Sbjct: 163 DASKKLAKMQETLDFIKERLKNVKKKKGVELFHKANKISGHQALDSDILEKGGIDNFGLK 222
Query: 511 VVKDGRFKNFEIIKDKTILGDKETLEIETPFIIPKGRESFALPLILNEEKIAYQGKITSK 570
VK GR +I +K + + E + I +I P E +LN K + T K
Sbjct: 223 YVKFGR---ADISVEKIVKENPEIIFIW--WISPLSPED-----VLNNPKFS-----TIK 267
Query: 571 DFPLENDEEYKLTLTYDIG 589
++N + YKL T DIG
Sbjct: 268 --AIKNKQVYKLP-TMDIG 283
>ref|NP_224030.1| putative [Helicobacter pylori J99]
Length = 553
Score = 25.8 bits (55), Expect = 5.8
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 199 KRIFKAHDWLYDGVGSLMNLDQIFYLECLYQAQFYTSKNIEPTLI-RNEQDLYALIKN 255
KR+ + +WL+ G G + ++ +IF L+ + SK + TL+ N + A IK+
Sbjct: 62 KRLKYSLEWLFIGSGIIFSVAEIF---TLFMFKMPFSKGLIDTLLATNSSETMAFIKS 116
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 25.8 bits (55), Expect = 5.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 408 KDAKFYPKSVALGFSSLFENKLKKNE 433
KDAK PKS + FS + K+ K++
Sbjct: 24 KDAKNAPKSASKDFSKILNQKISKDK 49
>ref|NP_223436.1| putative [Helicobacter pylori J99]
Length = 429
Score = 25.8 bits (55), Expect = 5.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 937 LLAFLSYRNAKRELELIPESEKTMRLLDSIDKAIEKE 973
LLA+L+ RN +++ E++ L+ K IEKE
Sbjct: 130 LLAYLNTRNNDFNIQVFDSDEESPEKLEETYKEIEKE 166
>ref|NP_223418.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helicobacter pylori J99]
Length = 293
Score = 25.8 bits (55), Expect = 5.8
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 390 NIKNFEFAKIKHKISLYFKDAKFY 413
N+KN E +KI H S KDA FY
Sbjct: 185 NLKN-ELSKIAHTCSKVLKDAPFY 207
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 25.8 bits (55), Expect = 5.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 601 VNNDLKPIVMEWQRIDRVELPTPDSIKKPSIDELK 635
+ NDLK +D + LP P S+K+ + +K
Sbjct: 51 LENDLKQAFTYLNEVDAIGLPAPKSVKESDLIVVK 85
>ref|NP_223220.1| putative [Helicobacter pylori J99]
Length = 273
Score = 25.8 bits (55), Expect = 5.8
Identities = 15/35 (42%), Positives = 21/35 (59%), Gaps = 4/35 (11%)
Query: 895 NEKFLENLMAQTSLEQQKDFLKRIEECLKNPESFY 929
N+K +ENLM + S K FL+R+ KN + FY
Sbjct: 21 NDK-IENLMGERSYHMNKLFLERL---FKNRKDFY 51
>ref|NP_222993.1| putative [Helicobacter pylori J99]
Length = 172
Score = 25.8 bits (55), Expect = 5.8
Identities = 20/65 (30%), Positives = 34/65 (51%), Gaps = 8/65 (12%)
Query: 350 DEKGYLANALKNYDETLVEAFMRDFKERYKIEKLYYLLD----DNIKNFEFAK-IKHKIS 404
D + Y+ N Y E ++A + FK+ +E+L +LLD D+I F K +K ++
Sbjct: 80 DPQSYMDNF---YKEVGLDAQLERFKKEGSLEELEFLLDYKYSDSIIRFLLEKGVKIEVF 136
Query: 405 LYFKD 409
+ KD
Sbjct: 137 IGLKD 141
>ref|NP_224040.1| DIMETHYLADENOSINE TRANSFERASE [Helicobacter pylori J99]
Length = 271
Score = 25.4 bits (54), Expect = 7.6
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 17/83 (20%)
Query: 845 LQQEFINLPSTDFLSRCLGS----LEKDFQKTIFKKLKVTNLKTLSIVARASWNNEKFLE 900
LQ+ F L DFL C S L + +K++ K K+ K L +A LE
Sbjct: 201 LQKGFETLE--DFLKACFSSPRKTLSNNLKKSVSYKEKLD--KVLDFLA---------LE 247
Query: 901 NLMAQTSLEQQKDFLKRIEECLK 923
N + KD+LK ++ LK
Sbjct: 248 NQPTSVRASEVKDYLKLLKSVLK 270
>ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 847
Score = 25.4 bits (54), Expect = 7.6
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 827 KKGLLDFFSRLNDSIPAKLQQEFINLPSTDFLSRCLGSLEKDFQK 871
K+ DF + LN P EF+ +T+ L+ LG + DF++
Sbjct: 430 KQNNADFSAILNAYAP----NEFVGYETTECLANALGFFDSDFKE 470
>ref|NP_223802.1| putative PYRROLINE-5-CARBOXYLATE REDUCTASE [Helicobacter pylori
J99]
Length = 257
Score = 25.4 bits (54), Expect = 7.6
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 440 VDLVVKENHKSKTFNDCGLVLERQKSDDSKEFLILQDSF--IKKALKNFKRALGLEKEGF 497
VD V N + F LV K +E L +DS +K + K F + L E+
Sbjct: 159 VDSSVATNGSALAF--LSLVASSLKDAGIREGLNAKDSLELVKMSFKGFAKLLEKERPEM 216
Query: 498 ILYKECLPK 506
I+ + C PK
Sbjct: 217 IIEQICTPK 225
>ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
Length = 331
Score = 25.4 bits (54), Expect = 7.6
Identities = 27/83 (32%), Positives = 40/83 (47%), Gaps = 15/83 (18%)
Query: 346 KGKIDEKGYLANALKNYDET--LVEA-------FMRDFKERYKIEKLYYLLDDNIKNFEF 396
KGK + YL LK+Y E LV++ ++R F + Y K Y D +KN F
Sbjct: 69 KGK---QRYLYVYLKDYRELECLVKSKMAKYVMYLRQFFD-YLDRKRRYGFDFTLKNLAF 124
Query: 397 AKIKHKISLYF--KDAKFYPKSV 417
AK K + + KD K + K++
Sbjct: 125 AKTKESLPRHLNDKDLKSFLKTL 147
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 25.0 bits (53), Expect = 10.0
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 368 EAFMRDFKERYKIEKLYYLLDDNIKNFEFAKIKHKISLYFKDAKFYPKSVALGFSSLFEN 427
E F+ + + + +K Y D++ F + + +FKDA LG S +N
Sbjct: 299 ETFLSAYDPKLREKKGVYYTPDSVVEFIINALDSLLKTHFKDAP-------LGLKSALDN 351
Query: 428 K 428
K
Sbjct: 352 K 352
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 25.0 bits (53), Expect = 10.0
Identities = 33/161 (20%), Positives = 68/161 (41%), Gaps = 30/161 (18%)
Query: 510 EVVKDGRFKN-FEIIKDKTILGDKETLEIETPFIIPKGRESFALPLILNEEKIAYQGKIT 568
E+ +D + ++ FE+IKD + + + +ETP P++L E + + KI
Sbjct: 714 EIAQDEKLEHEFEVIKDCIVSLRRLKIMLETP------------PIVLKEASVGLREKI- 760
Query: 569 SKDFPLENDEEYKLTLTYDIGTEFNYVLEFKPVN--NDLKPIVMEWQRIDRVELPTPDSI 626
EN E + E V+ +KP+ +D+ + ++ ++L +
Sbjct: 761 ------ENTERLQNYAQKLAKLEKVSVITYKPLKSVSDVGEFCQTYADLENLDLSPLIAR 814
Query: 627 KKPSIDELK--------NDFNPKRGKSSDLFEWALEQLETL 659
K +++L+ ++ N + + E A E L+TL
Sbjct: 815 LKKQLEKLEKEKLKLNLHNENFVKNAPKSVLEKARESLKTL 855
>ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter pylori J99]
Length = 171
Score = 25.0 bits (53), Expect = 10.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 243 IRNEQDLYALIKNSFPIKDLSFEKMRLKAKEFFENELRQ 281
++ + D+ LIKNS + DL +K++ + E +LR+
Sbjct: 114 LQTKMDVENLIKNSKALMDLEVKKIKRELVESVFKDLRE 152
>ref|NP_223506.1| putative [Helicobacter pylori J99]
Length = 313
Score = 25.0 bits (53), Expect = 10.0
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 875 KKLKVTNLKT--LSIVARASWNNEKFLENLMAQTSLEQQKDFLKRI 918
K++ V N + ++ +SW NE +L T Q D LKR+
Sbjct: 190 KEISVHNCRECYFQAISNSSWANEGYLVGRHIDTHNPQLMDLLKRL 235
>ref|NP_223383.1| putative [Helicobacter pylori J99]
Length = 338
Score = 25.0 bits (53), Expect = 10.0
Identities = 19/52 (36%), Positives = 25/52 (47%), Gaps = 6/52 (11%)
Query: 818 FDPQTDRDFKKGLLDFFSRLNDSIPAKLQQ----EFINLPSTDFLSRCLGSL 865
F PQ K D RL+ IP +L+ EF+ P+ DFL+R SL
Sbjct: 286 FKPQKTLSMPKDFKDRARRLD--IPKRLRPVLYAEFLKQPTHDFLTRFKQSL 335
>ref|NP_223219.1| putative [Helicobacter pylori J99]
Length = 321
Score = 25.0 bits (53), Expect = 10.0
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 431 KNERL--RYNSVDLVVKENHKSKTFND 455
KN RL R+ L++K NH+ + +ND
Sbjct: 268 KNHRLLLRFGHGHLILKNNHQEQDYND 294
>ref|NP_223086.1| 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE [Helicobacter
pylori J99]
Length = 270
Score = 25.0 bits (53), Expect = 10.0
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 16/100 (16%)
Query: 299 YKEMYIDMFSPEPFALLVGNGNEEKILK----LPLLVKKQENNTYINANGAKGKI----- 349
Y ++ +F P +LVG+ L VK +T GAK
Sbjct: 31 YDALFAQIFDPLVDVILVGDSLNMSFFNQNDTLSASVKMMLYHTKAVCAGAKTPFIITDM 90
Query: 350 ------DEKGYLANALKNYDETLVEAF-MRDFKERYKIEK 382
DEK L NA++ Y ET A + KE+ K+ K
Sbjct: 91 PFGSYKDEKTALKNAIRVYKETQASAIKLEGGKEKAKLVK 130
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 25.0 bits (53), Expect = 10.0
Identities = 21/59 (35%), Positives = 26/59 (43%), Gaps = 7/59 (11%)
Query: 390 NIKNFEFAKIKHKISLYFKDAKFYPKS-------VALGFSSLFENKLKKNERLRYNSVD 441
NI++ KI +I KD K Y K + G FENK K E LR+ S D
Sbjct: 352 NIRSASVKKILSEIERLSKDNKNYHKFYEPFGKVLKEGLYGDFENKEKLLELLRFYSKD 410
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.139 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,211,710
Number of Sequences: 1491
Number of extensions: 65959
Number of successful extensions: 289
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 72
length of query: 1021
length of database: 494,079
effective HSP length: 87
effective length of query: 934
effective length of database: 364,362
effective search space: 340314108
effective search space used: 340314108
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)