BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644677|ref|NP_206847.1| hypothetical protein
[Helicobacter pylori 26695]
         (45 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223690.1|  putative [Helicobacter pylori J99]               20  8.0
ref|NP_223075.1|  ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic...    20  8.0
ref|NP_222763.1|  putative TRANSCRIPTIONAL REGULATOR [Helico...    20  8.0

>ref|NP_223690.1| putative [Helicobacter pylori J99]
          Length = 164

 Score = 20.4 bits (41), Expect = 8.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 11 FQKARCVTILFFHKELGGKECK 32
          FQ + CV +LFF   L G   K
Sbjct: 4  FQTSLCVGLLFFGGVLLGDSSK 25



>ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
          Length = 632

 Score = 20.4 bits (41), Expect = 8.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 23  HKELGGKECKGAFLLGQPPT 42
           +  LG K  KG  L+G P T
Sbjct: 195 YANLGAKIPKGVLLVGPPGT 214



>ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
          Length = 757

 Score = 20.4 bits (41), Expect = 8.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 2   CGFALNFKCFQ 12
           CG ALN+K F+
Sbjct: 187 CGIALNYKRFK 197



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.333    0.147    0.504 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,701
Number of Sequences: 1491
Number of extensions: 1247
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 45
length of database: 494,079
effective HSP length: 21
effective length of query: 24
effective length of database: 462,768
effective search space: 11106432
effective search space used: 11106432
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 41 (20.4 bits)