BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645082|ref|NP_207252.1| hypothetical protein
[Helicobacter pylori 26695]
(232 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 27 0.46
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 26 1.0
ref|NP_223372.1| putative [Helicobacter pylori J99] 25 1.3
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 25 1.3
ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEI... 25 1.8
ref|NP_223667.1| putative [Helicobacter pylori J99] 25 1.8
ref|NP_223631.1| GTPase in circumferential ring formation [... 25 1.8
ref|NP_223220.1| putative [Helicobacter pylori J99] 25 1.8
ref|NP_223192.1| cag island protein, DNA transfer protein [... 25 2.3
ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 24 3.0
ref|NP_223922.1| putative [Helicobacter pylori J99] 24 3.9
ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pyl... 24 3.9
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 24 3.9
ref|NP_222966.1| putative [Helicobacter pylori J99] 24 3.9
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 23 5.1
ref|NP_223393.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter ... 23 5.1
ref|NP_223055.1| putative [Helicobacter pylori J99] 23 5.1
ref|NP_222779.1| putative [Helicobacter pylori J99] 23 5.1
ref|NP_224122.1| putative [Helicobacter pylori J99] 23 6.7
ref|NP_223618.1| putative [Helicobacter pylori J99] 23 6.7
ref|NP_223583.1| STATIONARY PHASE PROTEIN [Helicobacter pyl... 23 6.7
ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pyl... 23 6.7
ref|NP_224199.1| putative [Helicobacter pylori J99] 23 8.7
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 23 8.7
ref|NP_223158.1| putative [Helicobacter pylori J99] 23 8.7
ref|NP_222837.1| 50S RIBOSOMAL PROTEIN L20 [Helicobacter py... 23 8.7
ref|NP_222774.1| putative [Helicobacter pylori J99] 23 8.7
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 26.9 bits (58), Expect = 0.46
Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 11 MNKSNKLVIINRAIPGGGKTSLIKQIEELAKSLGHSISVHSTDEYFIQTDEEGIRHYVVD 70
+N S +++ N+ + S+ K + E+ + + + H E F + +EG+ +
Sbjct: 337 LNVSREILQQNKILANIRSASVKKILSEIERLSKDNKNYHKFYEPFGKVLKEGLYGDFEN 396
Query: 71 KKKLNE----YHQNNQE-----AFKQAL-ENRIDIVVCDNTNFESWQSKPYTDMAREFGY 120
K+KL E Y ++ E +K+ L EN+ I N + ++ P + + GY
Sbjct: 397 KEKLLELLRFYSKDKGEWISLKEYKENLKENQKSIYYLLGENLDLLKASPLLEKYAQKGY 456
Query: 121 KILLI 125
+LL+
Sbjct: 457 DVLLL 461
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 25.8 bits (55), Expect = 1.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 69 VDKKKLNEYHQNNQEAFKQALENRIDIVVCDNTNFESWQSKPYT 112
+D+ K NE +N QE K+ E ++I+ + + S+Q + T
Sbjct: 764 IDENKFNEIKKNEQEGLKRLEELFLEIIYQNIKDKISYQMRETT 807
>ref|NP_223372.1| putative [Helicobacter pylori J99]
Length = 133
Score = 25.4 bits (54), Expect = 1.3
Identities = 20/113 (17%), Positives = 47/113 (40%), Gaps = 13/113 (11%)
Query: 16 KLVIINRAIPGGGKTSLIKQIEELAKSLGHSISVHSTDEYFIQTDEEGIRHYVVDKKKLN 75
K V++ + + G GKT+L ++ K LG I S + E + HY
Sbjct: 21 KGVVLLKGVVGSGKTTL---VQACLKHLGLDIQATSPTFSLMHAYSESVFHY-------- 69
Query: 76 EYHQNNQEAFKQALENRIDIVVCDNTNFESWQSKPYTDMAREFGYKILLIDFK 128
+++ + E + ++ ++ +F W + + +++ I +++ K
Sbjct: 70 DFYMRDLETCLEL--GMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKVVEIK 120
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 25.4 bits (54), Expect = 1.3
Identities = 15/48 (31%), Positives = 24/48 (49%)
Query: 72 KKLNEYHQNNQEAFKQALENRIDIVVCDNTNFESWQSKPYTDMAREFG 119
KK E QN E F++ + +D + D+ F S + K + + EFG
Sbjct: 419 KKEKEKFQNEIEDFQKDSKAYLDALGNDHIAFVSKKDKKHLALVAEFG 466
>ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR [Helicobacter
pylori J99]
Length = 277
Score = 25.0 bits (53), Expect = 1.8
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 29 KTSLIKQIEELAKSLGHSISVHSTDEYFIQTDEEGIRHYVVDKKKLNEYHQNNQEAFKQA 88
K +IK IEEL K ++ +T +++ + I KL ++ QN E F
Sbjct: 138 KDGVIKNIEEL-KDKELIVNKGTTADFYFTKNYPNI--------KLLKFEQNT-ETFLAL 187
Query: 89 LENRIDIVVCDNTNFESW 106
L N+ + DNT +W
Sbjct: 188 LNNKAIALAHDNTLLLAW 205
>ref|NP_223667.1| putative [Helicobacter pylori J99]
Length = 227
Score = 25.0 bits (53), Expect = 1.8
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Query: 30 TSLIKQIEELAKSLGHSI-----SVHSTDEYFIQTDEEGIRHYVVDKKKLN--EYHQNNQ 82
T LIK+++E K + HS+ S+ + EG+ ++D K++N Y+ NN+
Sbjct: 74 TPLIKELKEKKKEITHSLILSKMSLGAVIRLIFCYKLEGV---ILDLKRINFKSYYPNNK 130
Query: 83 EA 84
A
Sbjct: 131 NA 132
>ref|NP_223631.1| GTPase in circumferential ring formation [Helicobacter pylori J99]
Length = 385
Score = 25.0 bits (53), Expect = 1.8
Identities = 12/32 (37%), Positives = 18/32 (55%)
Query: 13 KSNKLVIINRAIPGGGKTSLIKQIEELAKSLG 44
K KLVI++ + GG T I ++AK +G
Sbjct: 111 KDAKLVIVSTGLGGGTGTGATPTIVKIAKEVG 142
>ref|NP_223220.1| putative [Helicobacter pylori J99]
Length = 273
Score = 25.0 bits (53), Expect = 1.8
Identities = 17/53 (32%), Positives = 26/53 (48%), Gaps = 4/53 (7%)
Query: 146 IKKPRGIAKHYDYDFYLERVLVEPQDYEKQNRELSLKALEFLKYN----FDFD 194
I+ G ++ +LER+ +D+ + R SLK L LK N F+FD
Sbjct: 24 IENLMGERSYHMNKLFLERLFKNRKDFYEMGRLDSLKLLNTLKENGLLSFNFD 76
>ref|NP_223192.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 330
Score = 24.6 bits (52), Expect = 2.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 26 GGGKTSLIKQIEELAKSLGHSISVHSTDE 54
G GKT+ IK I E IS+ T+E
Sbjct: 181 GSGKTTYIKSIMEFIPKEERIISIEDTEE 209
>ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 613
Score = 24.3 bits (51), Expect = 3.0
Identities = 25/114 (21%), Positives = 48/114 (41%), Gaps = 9/114 (7%)
Query: 74 LNEYHQNNQEAFKQALENRIDIVVCDNTNFESWQSKPYTDMAREFGYKILLIDFKNRHLE 133
L+ Y +E+ K AL + ++ N + D+ ++F + +FK+ H
Sbjct: 104 LSIYSNIPKESLKDALNTKGYTILAYNLTPN--MAANIRDLNKKFLAFGVFQNFKDAH-- 159
Query: 134 TPMDYGWDVAQCIKKPRGIAKHYDYDFYLERVL--VEPQDYEKQNRELSLKALE 185
D W + G+++HY Y LE ++ V+ Q+ +K K +E
Sbjct: 160 ---DKVWQKQGLNIEVSGVSRHYPYQNSLEPIIGYVQKQEEDKLTLTTGKKGVE 210
>ref|NP_223922.1| putative [Helicobacter pylori J99]
Length = 352
Score = 23.9 bits (50), Expect = 3.9
Identities = 9/42 (21%), Positives = 22/42 (51%)
Query: 138 YGWDVAQCIKKPRGIAKHYDYDFYLERVLVEPQDYEKQNREL 179
Y W + +++ R + +Y++ L+ + +DY+ N +L
Sbjct: 125 YSWLYQKRVRQNRSLCLKTEYEYNLDLIHAFCKDYDLPNAQL 166
Score = 22.7 bits (47), Expect = 8.7
Identities = 18/73 (24%), Positives = 34/73 (45%), Gaps = 1/73 (1%)
Query: 161 YLERVLVEPQDYEKQNRELSLKALEFLKYNFDFDVIFYSFGEQLMPILTRMLVSVSKSHR 220
+++ V++E + S+ AL FL NF + +S + + IL S ++
Sbjct: 71 FIDEVIIEDNHLATTLKNRSIDALIFLFSNFKNAKLAFSLRKSIPYILAPKTKIYSWLYQ 130
Query: 221 KRL-ENYGKDIKT 232
KR+ +N +KT
Sbjct: 131 KRVRQNRSLCLKT 143
>ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 442
Score = 23.9 bits (50), Expect = 3.9
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 143 AQCIKKPRGIAKHYDYDFYL----ERVLVEPQDYEKQNRELSLKALEFLK 188
AQ IKKP A H ++F E E + + + L L FLK
Sbjct: 381 AQKIKKPFSYANHKGHEFVAVIGEEEFKSETLSLKNMHSGMQLNCLSFLK 430
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 23.9 bits (50), Expect = 3.9
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Query: 29 KTSLIKQIEELAKSLGHSISVHSTDEYFIQTDEEGIRHYVVDKKKLNEYHQNNQEAFKQA 88
+ +L+++IEE +GH H+ E ++ + + V E Q++ E +Q
Sbjct: 331 ENALLEKIEEHVHQVGHCYRCHNVVEPYVS------KQWFVKP----EIAQSSIEKIQQG 380
Query: 89 LENRIDIVVCDNTNFESWQSKPYTDMAREF-GYKILLIDFKNRH----LETPM 136
L +N N + +P+ + F G++I + +N H L+TP+
Sbjct: 381 LARFYPSNWINNYNAWMRELRPWCISRQLFWGHQIPVFTCENNHQFVSLDTPL 433
>ref|NP_222966.1| putative [Helicobacter pylori J99]
Length = 152
Score = 23.9 bits (50), Expect = 3.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 98 CDNTNFESWQSKPYTDMAREFGYKILLIDFKNRHL 132
C N + S Q+ + + +EF +KI ID K + L
Sbjct: 100 CHNESRRSTQTIGISKLIKEFEFKIKPIDSKEQEL 134
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 23.5 bits (49), Expect = 5.1
Identities = 19/79 (24%), Positives = 34/79 (42%), Gaps = 9/79 (11%)
Query: 11 MNKSNKLVIINRAIPGGGKTSLIKQIEELAKSLGHSISVHSTDEYFIQTDEEGIRHYVVD 70
M+ NK + ++ P G T L+ +++ K + + E +T
Sbjct: 26 MSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPFIVFALESQTKTKRA-------- 77
Query: 71 KKKLNEYHQNNQEAFKQAL 89
+KL EY QN ++A K+ L
Sbjct: 78 -EKLGEYKQNRKDAPKEML 95
>ref|NP_223393.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter pylori J99]
Length = 347
Score = 23.5 bits (49), Expect = 5.1
Identities = 16/52 (30%), Positives = 24/52 (45%), Gaps = 5/52 (9%)
Query: 149 PRGIAKHYDYDFYLERVL-----VEPQDYEKQNRELSLKALEFLKYNFDFDV 195
PR A Y+ YL ++ V+ DY N + AL+ + +NF F V
Sbjct: 119 PRVEASVLSYNKYLTKLYAKDLGVKALDYVLLNEKNRANALDLIGFNFPFIV 170
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 23.5 bits (49), Expect = 5.1
Identities = 21/73 (28%), Positives = 28/73 (37%), Gaps = 5/73 (6%)
Query: 120 YKILLIDFKNRHLETPMDYGWDVAQCIKKPRGIAKHYDYDFYLERVLVEPQDYEKQNREL 179
Y ++F N LET DY D K + I D +E L Y KQ +
Sbjct: 205 YNQKFLEFLNLKLETDCDYSIDF-----KTQKILSQTFNDQKIEPKLYANSSYLKQGALV 259
Query: 180 SLKALEFLKYNFD 192
E+L+ N D
Sbjct: 260 LQTIEEYLQENND 272
>ref|NP_222779.1| putative [Helicobacter pylori J99]
Length = 86
Score = 23.5 bits (49), Expect = 5.1
Identities = 14/51 (27%), Positives = 22/51 (42%), Gaps = 11/51 (21%)
Query: 57 IQTDEEGIRHYVVDKKKLNEYHQNNQEAFKQALENRIDIVVCDNTNFESWQ 107
+Q D E +R +V + E FK+ L ++ + N ESWQ
Sbjct: 4 VQMDTEEVREFV-----------GHLERFKELLNEEVNSLNGHFHNLESWQ 43
>ref|NP_224122.1| putative [Helicobacter pylori J99]
Length = 108
Score = 23.1 bits (48), Expect = 6.7
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 152 IAKHYDYDFYLERVLVEPQDYEKQNRELSLKALEFLK 188
I K +D + ER +P D +QN E+++ + FL+
Sbjct: 59 IIKRHDLE---ERQSNQPSDIFRQNAEINVSSQTFLR 92
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 23.1 bits (48), Expect = 6.7
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 72 KKLNEYHQNNQEAFKQALENRID 94
+K E H N+ E KQ LEN+I+
Sbjct: 305 QKEKEKHLNDLEDQKQILENKIN 327
>ref|NP_223583.1| STATIONARY PHASE PROTEIN [Helicobacter pylori J99]
Length = 267
Score = 23.1 bits (48), Expect = 6.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 77 YHQNNQEAFKQALENRIDIVV 97
YH +A +QALEN +I V
Sbjct: 12 YHAKGIKALEQALENMAEIYV 32
>ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pylori J99]
Length = 421
Score = 23.1 bits (48), Expect = 6.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 113 DMAREFGYKILLIDFKNRH 131
+ A+EFGY I L+ +H
Sbjct: 233 EFAKEFGYSIKLLGIAKKH 251
>ref|NP_224199.1| putative [Helicobacter pylori J99]
Length = 254
Score = 22.7 bits (47), Expect = 8.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 159 DFYLERVLVEPQDYEKQNRELSLKALEF 186
D+Y L E ++Y+ + +E+ K +EF
Sbjct: 93 DYYRLPELSERENYKSKQKEIFTKQIEF 120
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 22.7 bits (47), Expect = 8.7
Identities = 26/114 (22%), Positives = 48/114 (41%), Gaps = 2/114 (1%)
Query: 11 MNKSNKLVIINRAIPGGGKTSLIKQIEELAKSLGHSISVHSTDEYFIQTDEEGIRHYVVD 70
+NK+ L I A+ G T++IK +E SL + +T E + +Y+
Sbjct: 727 INKNAVLDTIKFALGGATLTTMIKGVESYPISLRLEDTERNTIEKLKNLYIKTAYNYMPL 786
Query: 71 KKKLNEYHQNNQEAFKQALENRIDIVVCDNTNFESWQSKPYTDMAREFGYKILL 124
++ + Y+ N+ K ++ + N S S Y +A++ KI L
Sbjct: 787 RELAHVYYDNSPAVLKSEKGLNVNFIYIVPQNGIS--SDTYRQLAQKTLEKIQL 838
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 22.7 bits (47), Expect = 8.7
Identities = 21/103 (20%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 129 NRHLETPMDYGWDVAQCIKK--PRGIAKHYDYDFY-LERVLVEPQDYE--------KQNR 177
N +T ++ G D+ I+ P+ + + + Y L+ +V+ +D + ++
Sbjct: 278 NIESQTKIEVGEDIPTQIQAQIPKSRVRLNEREIYDLDYAIVKAKDLKPSFTTGGTQKRT 337
Query: 178 ELSLKALEFLKYNFDFDVIFYSFGEQLMPILTRMLVSVSKSHR 220
+++ + ++ + NFD IF S G + +PI+ ++ +HR
Sbjct: 338 DMNEEQIKSIAENFDPKKIFGSGGFEDLPIILHDGQVIAGNHR 380
>ref|NP_222837.1| 50S RIBOSOMAL PROTEIN L20 [Helicobacter pylori J99]
Length = 116
Score = 22.7 bits (47), Expect = 8.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 69 VDKKKLNEYHQNNQEAFKQALEN 91
+D+K L + N+ +AFK LE+
Sbjct: 89 LDRKVLADMAMNDMQAFKSVLES 111
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 22.7 bits (47), Expect = 8.7
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 146 IKKPRGIAKHYDYDFYLERVLVEPQDYEKQNREL 179
+K G+ D D + R+ +D ++QNR+L
Sbjct: 267 LKSLEGMEAKSDLDLHNRRLASANEDLKRQNRKL 300
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.137 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 265,647
Number of Sequences: 1491
Number of extensions: 12874
Number of successful extensions: 69
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 29
length of query: 232
length of database: 494,079
effective HSP length: 75
effective length of query: 157
effective length of database: 382,254
effective search space: 60013878
effective search space used: 60013878
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)