BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645083|ref|NP_207253.1| hypothetical protein
[Helicobacter pylori 26695]
(103 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Heli... 86 2e-19
ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERA... 29 0.023
ref|NP_224087.1| OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE... 27 0.089
ref|NP_223042.1| CTP SYNTHASE [Helicobacter pylori J99] 25 0.44
ref|NP_222827.1| putative [Helicobacter pylori J99] 24 0.99
ref|NP_224041.1| putative [Helicobacter pylori J99] 23 1.3
ref|NP_223688.1| putative PARALOG OF HpaA [Helicobacter pyl... 23 1.3
ref|NP_224126.1| putative [Helicobacter pylori J99] 23 1.7
ref|NP_223778.1| ATP synthase F1, subunit gamma [Helicobact... 23 1.7
ref|NP_223731.1| putative [Helicobacter pylori J99] 23 1.7
ref|NP_223068.1| putative [Helicobacter pylori J99] 23 1.7
ref|NP_222941.1| putative [Helicobacter pylori J99] 23 1.7
ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicob... 23 2.2
ref|NP_223531.1| putative [Helicobacter pylori J99] 22 2.9
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 22 3.7
ref|NP_222783.1| putative [Helicobacter pylori J99] 22 4.9
ref|NP_223503.1| TYPE I RESTRICTIONENZYME (SPECIFICITY SUBU... 21 8.3
>ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
Length = 331
Score = 86.3 bits (212), Expect = 2e-19
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 1 MFLQVVARTLRKNVNILEEQGFIEVIKGKQRYLYVYLKDYRELE 44
MFLQVVARTL KNVNILEEQGFIEVIKGKQRYLYVYLKDYRELE
Sbjct: 43 MFLQVVARTLIKNVNILEEQGFIEVIKGKQRYLYVYLKDYRELE 86
>ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE [Helicobacter pylori
J99]
Length = 581
Score = 29.3 bits (64), Expect = 0.023
Identities = 23/71 (32%), Positives = 35/71 (48%), Gaps = 6/71 (8%)
Query: 17 LEEQGFIEVIKGKQRYLYVYLKDYRELEGYNSVGANQKNNIPSPFFLQIMRFLEKFAKEI 76
L+E IE+I Q+Y Y K + GAN K PF + + ++ KFA +
Sbjct: 342 LQETPVIELINKVQKY---YAKADVSAAALFNFGANLKKG---PFKRKDVAYIYKFANTL 395
Query: 77 ERVKITTKNVL 87
V+IT +N+L
Sbjct: 396 IGVRITGENLL 406
>ref|NP_224087.1| OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE [Helicobacter pylori
J99]
Length = 187
Score = 27.3 bits (59), Expect = 0.089
Identities = 13/29 (44%), Positives = 18/29 (61%)
Query: 66 MRFLEKFAKEIERVKITTKNVLCIFLAKS 94
+RFLEK KEIE + +KN + L +S
Sbjct: 17 LRFLEKLPKEIEIFVVASKNAHVVALEES 45
>ref|NP_223042.1| CTP SYNTHASE [Helicobacter pylori J99]
Length = 538
Score = 25.0 bits (53), Expect = 0.44
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 17 LEEQGFIEVIKGKQRYLYVYLKDYRELEGYNSVGANQKNNIPSPFFLQIMRFLEKFAKEI 76
LE+ F+ + G Q + + ++ L+G NS NQ+ P ++ +E F +
Sbjct: 369 LEKLPFLGICLGMQLAIVEFCRNVLGLKGANSTEFNQRCEYP------VVYLIEDFMDQN 422
Query: 77 ERVKITTKN 85
+ ++ T N
Sbjct: 423 HQKQVRTYN 431
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 23.9 bits (50), Expect = 0.99
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 51 ANQKNNIPSPFFLQIMRFLEKFAKEIERVKI 81
AN+K FL++ FLEK K E+ K+
Sbjct: 501 ANEKKTQVEEAFLKVAEFLEKVEKLHEKNKL 531
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 23.5 bits (49), Expect = 1.3
Identities = 8/23 (34%), Positives = 16/23 (68%)
Query: 3 LQVVARTLRKNVNILEEQGFIEV 25
+ V+ R++ KN++I E G+I +
Sbjct: 389 IAVIGRSMEKNLDIARELGYIHL 411
>ref|NP_223688.1| putative PARALOG OF HpaA [Helicobacter pylori J99]
Length = 249
Score = 23.5 bits (49), Expect = 1.3
Identities = 16/59 (27%), Positives = 26/59 (43%), Gaps = 6/59 (10%)
Query: 26 IKGKQR----YLYVYLKDYRELEGYNSVGANQKNNIPSPFFLQIMRFLEKFAKEIERVK 80
IKGKQ +L V + ++E + N + FLQ+ FLE+ + + K
Sbjct: 48 IKGKQEPKNNHLVVLIDP--KIEANKVIPENYQKEFEKSLFLQLSNFLERKGYSVSQFK 104
>ref|NP_224126.1| putative [Helicobacter pylori J99]
Length = 227
Score = 23.1 bits (48), Expect = 1.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 25 VIKGKQRYLYVYLK 38
+IKGK+R LY Y+K
Sbjct: 134 LIKGKKRLLYNYIK 147
>ref|NP_223778.1| ATP synthase F1, subunit gamma [Helicobacter pylori J99]
Length = 301
Score = 23.1 bits (48), Expect = 1.7
Identities = 9/26 (34%), Positives = 17/26 (64%)
Query: 71 KFAKEIERVKITTKNVLCIFLAKSLC 96
K+ +E+ER++I +++ I K LC
Sbjct: 71 KYFRELERLEIKKVDIIFITADKGLC 96
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 23.1 bits (48), Expect = 1.7
Identities = 11/31 (35%), Positives = 18/31 (57%)
Query: 57 IPSPFFLQIMRFLEKFAKEIERVKITTKNVL 87
+PS + + LEKF+K +E K + +N L
Sbjct: 122 LPSDIDIDDTKALEKFSKSLESEKESIQNSL 152
>ref|NP_223068.1| putative [Helicobacter pylori J99]
Length = 173
Score = 23.1 bits (48), Expect = 1.7
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 4 QVVARTLRKNVNILEEQGFIEVIKGKQRYLYVYLKDYRELEGYNSVG-ANQKNNIPSPFF 62
+V + + +N+LE G G Q YL L + +EL GY S +N K +P F
Sbjct: 105 EVFSMIVDNPLNLLENVG------GFQAYLEEKLNEIKELLGYLSESLSNPKAFMPKQSF 158
>ref|NP_222941.1| putative [Helicobacter pylori J99]
Length = 355
Score = 23.1 bits (48), Expect = 1.7
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 19 EQGFIEVIKGKQRYLYVYLKDYRELEG 45
E+GF+EV + + + YLK R EG
Sbjct: 176 EKGFLEVKQSNHKAVIYYLKACRLNEG 202
>ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicobacter pylori J99]
Length = 500
Score = 22.7 bits (47), Expect = 2.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 67 RFLEKFAKEIERVKITTKNVLCIFLAK 93
RF + AKE++ +K KN+ F+ K
Sbjct: 189 RFKTEIAKELQDLKELVKNIKSDFIPK 215
>ref|NP_223531.1| putative [Helicobacter pylori J99]
Length = 155
Score = 22.3 bits (46), Expect = 2.9
Identities = 13/42 (30%), Positives = 19/42 (44%), Gaps = 5/42 (11%)
Query: 39 DYRELEGYNSVGANQKNNIPSPF-----FLQIMRFLEKFAKE 75
DYR+ Y+ N++N P P L+ L +F KE
Sbjct: 102 DYRDGINYSISNLNRENPTPKPLTSQEVLLKQQESLNEFTKE 143
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 21.9 bits (45), Expect = 3.7
Identities = 14/52 (26%), Positives = 26/52 (49%), Gaps = 6/52 (11%)
Query: 40 YRELEGYNSVG------ANQKNNIPSPFFLQIMRFLEKFAKEIERVKITTKN 85
Y+ L+ + VG A+ +N SP ++ + LEK KE ++ + +N
Sbjct: 784 YKPLKSVSDVGEFCQTYADLENLDLSPLIARLKKQLEKLEKEKLKLNLHNEN 835
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 21.6 bits (44), Expect = 4.9
Identities = 8/38 (21%), Positives = 20/38 (52%)
Query: 7 ARTLRKNVNILEEQGFIEVIKGKQRYLYVYLKDYRELE 44
A+ L V + + F+E ++Y ++ D+R+++
Sbjct: 707 AKELHDKVGAEKLKSFLEKAIDNEQYCVIFAHDFRQIK 744
>ref|NP_223503.1| TYPE I RESTRICTIONENZYME (SPECIFICITY SUBUNIT) [Helicobacter
pylori J99]
Length = 207
Score = 20.8 bits (42), Expect = 8.3
Identities = 12/34 (35%), Positives = 16/34 (46%)
Query: 24 EVIKGKQRYLYVYLKDYRELEGYNSVGANQKNNI 57
EV + K + +Y + REL GY N NI
Sbjct: 37 EVSEVKNKGMYPVINSGRELYGYYHDFNNDGENI 70
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.327 0.144 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,386
Number of Sequences: 1491
Number of extensions: 4964
Number of successful extensions: 26
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 17
length of query: 103
length of database: 494,079
effective HSP length: 65
effective length of query: 38
effective length of database: 397,164
effective search space: 15092232
effective search space used: 15092232
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 42 (20.8 bits)