BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645084|ref|NP_207254.1| hypothetical protein
[Helicobacter pylori 26695]
(150 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223534.1| putative [Helicobacter pylori J99] 32 0.006
ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pyl... 30 0.028
ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter p... 25 0.91
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 25 1.2
ref|NP_223353.1| short-chain fatty acids transporter [Helic... 25 1.2
ref|NP_223270.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 24 2.0
ref|NP_223659.1| putative [Helicobacter pylori J99] 23 2.7
ref|NP_223657.1| putative [Helicobacter pylori J99] 23 2.7
ref|NP_222962.1| putative [Helicobacter pylori J99] 23 2.7
ref|NP_222912.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_224156.1| DNA POLYMERASE III [Helicobacter pylori J99] 23 4.5
ref|NP_223770.1| putative [Helicobacter pylori J99] 23 4.5
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 23 4.5
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 5.9
ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [H... 22 5.9
ref|NP_222996.1| DIAMINOPIMELATE DECARBOXYLASE [Helicobacte... 22 5.9
ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylor... 22 7.7
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 22 7.7
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 32.3 bits (72), Expect = 0.006
Identities = 27/124 (21%), Positives = 54/124 (42%), Gaps = 14/124 (11%)
Query: 20 VKEHLEKFYSNKEQETIAQTLENETEISCSYFWDKDFLLLEQLLENNLGHFTFESEFALL 79
+ +H + K + I + L+N TE K L+ ++ +++ F F + +
Sbjct: 477 IAQHQSLNHLVKNNQVIMEKLKNATEEI------KRSLMQQESVKDAYSEFVFALKRLKI 530
Query: 80 KDKETLNLSQIKQIGVLKVLTYEMIQTLKNQIIHLAQVVNEENLEKDEELVVYHLNFTSR 139
+ L L +I K+++ E N H + + +N K E +V+YH N+
Sbjct: 531 LKAQMLELQKINNECYAKLISIE------NSFQHAS--ITTKNPFKQENIVIYHRNYPKV 582
Query: 140 NNLT 143
+NL+
Sbjct: 583 SNLS 586
>ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 442
Score = 30.0 bits (66), Expect = 0.028
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 12 QIDETLLNVKEHLEKFYSNKEQETIAQTLENETEISCSYFWDKDFLLLEQLLENNLGHFT 71
Q++E +L + + LEK N +E L+ E ++ + KD L + Q+ +N+L H
Sbjct: 177 QVNE-VLRIVDKLEKIGLNGVEEE----LKKECDLDSNTI--KDLLEMVQIKQNDLSHAE 229
Query: 72 FESEFALLKD 81
F + A LKD
Sbjct: 230 FFEKIAYLKD 239
>ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter pylori J99]
Length = 171
Score = 25.0 bits (53), Expect = 0.91
Identities = 27/119 (22%), Positives = 48/119 (39%), Gaps = 24/119 (20%)
Query: 2 IKLILHKKSIQIDETLLNV-------KEHLEKFY----------------SNKEQETIAQ 38
++ LH KS++I + L + KEH +K +NKE TI Q
Sbjct: 51 LRSFLHSKSLEISKRLEEIQAQLKVSKEHKKKLLKELEQAKEKAELIISDANKEAYTITQ 110
Query: 39 TLENETEISCSYFWDKDFLLLEQLLENNLGHFTFESEFALLKDKETLNLSQIKQIGVLK 97
E +T++ K+ L L + ES F L++ + ++ + + +LK
Sbjct: 111 KYELQTKMDVENL-IKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQDCVNILK 168
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 24.6 bits (52), Expect = 1.2
Identities = 15/31 (48%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Query: 67 LGHFTFESEFALLKDKETLNLSQIKQIGVLK 97
LG T E F+LL D+E LNL + +IG K
Sbjct: 402 LGKITQEWIFSLL-DEEGLNLEEALKIGAFK 431
>ref|NP_223353.1| short-chain fatty acids transporter [Helicobacter pylori J99]
Length = 454
Score = 24.6 bits (52), Expect = 1.2
Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 3/46 (6%)
Query: 5 ILHKKS---IQIDETLLNVKEHLEKFYSNKEQETIAQTLENETEIS 47
++H K ++ID LL + + S+++ +TIA LEN +S
Sbjct: 211 MIHPKKEEIVEIDSKLLKDEYKETELISHQQDKTIAHFLENSALLS 256
>ref|NP_223270.1| putative [Helicobacter pylori J99]
Length = 477
Score = 24.6 bits (52), Expect = 1.2
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 7/31 (22%)
Query: 106 TLKNQIIHLAQVVNEENL-------EKDEEL 129
+L+ Q I L Q+ NE+NL EKDE+L
Sbjct: 363 SLQKQSIMLGQLANEKNLAYKKLEQEKDEQL 393
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 23.9 bits (50), Expect = 2.0
Identities = 18/73 (24%), Positives = 34/73 (45%), Gaps = 1/73 (1%)
Query: 54 KDFLLLEQLLENNLGHFTFESEFALLKDKETLNLSQIKQIGVLKVLTYEMIQTLKNQIIH 113
+ F+ +QLLEN ++ A+ T L + V+ L Y + T+ NQ+
Sbjct: 36 QQFINNKQLLENQ-NIINSITQSAINIAGPTTGLITLSSQTVIDALGYGVSNTVGNQLEG 94
Query: 114 LAQVVNEENLEKD 126
++ ++N+ KD
Sbjct: 95 ISNILNQIGKRKD 107
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 23.5 bits (49), Expect = 2.7
Identities = 17/52 (32%), Positives = 26/52 (49%), Gaps = 2/52 (3%)
Query: 15 ETLLNVKEHLEKFYSNKEQETIAQTLENE--TEISCSYFWDKDFLLLEQLLE 64
E LLN +HL+K +K + L NE T+ + Y + +LL + LE
Sbjct: 389 EMLLNKLKHLDKRLLDKNSHLLLAQLRNEVKTKQNTQYNTLTNPILLAKALE 440
>ref|NP_223657.1| putative [Helicobacter pylori J99]
Length = 325
Score = 23.5 bits (49), Expect = 2.7
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 23 HLEKFYSNKEQETIAQTLENETEISCSYFWDKDFLLLEQLLENN 66
H+ K QET+ T +N+ ++C F + L++ L N
Sbjct: 62 HIVNSLGLKVQETLLGTYKNKIVVACKDFTTHQYELVDFLSLKN 105
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 23.5 bits (49), Expect = 2.7
Identities = 14/44 (31%), Positives = 23/44 (51%), Gaps = 2/44 (4%)
Query: 5 ILHKKSIQIDETLLNV--KEHLEKFYSNKEQETIAQTLENETEI 46
+L+KK +IDE L N+ KE K +E++ + +E I
Sbjct: 68 LLNKKEKEIDEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGI 111
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 23.1 bits (48), Expect = 3.5
Identities = 10/32 (31%), Positives = 16/32 (49%)
Query: 61 QLLENNLGHFTFESEFALLKDKETLNLSQIKQ 92
++L+N G + F +KDK N + KQ
Sbjct: 332 KILDNESGIYLFPKNIGEIKDKFEANKEKFKQ 363
>ref|NP_224156.1| DNA POLYMERASE III [Helicobacter pylori J99]
Length = 323
Score = 22.7 bits (47), Expect = 4.5
Identities = 17/52 (32%), Positives = 25/52 (47%), Gaps = 1/52 (1%)
Query: 58 LLEQLLENNLGHFTFESEFALLKDKETLNLSQIKQIGVLKVLTYEMIQTLKN 109
L+ +L +L E + L E +NL +K G+ V T E + TLKN
Sbjct: 49 LIARLKHQDLNLSALEKSLSRLIHDE-INLEYLKACGLNFVETSENLITLKN 99
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 22.7 bits (47), Expect = 4.5
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 72 FESEFALLKDKETLNLSQIKQIGVLKVLTYEMIQTLKNQIIHLAQVVNE 120
+E + +KD LSQ + + LK TLK Q L + NE
Sbjct: 68 YEGQANKIKDLNNAILSQEESLRALKASQEVQANTLKQQSQTLEDLRNE 116
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 22.7 bits (47), Expect = 4.5
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 72 FESEFALLKDKETLNLSQIKQIGV-LKVLTYEMIQTLKNQIIHLAQVVNEENLE------ 124
+ +F+LL KETL + Q+G+ L+ + N + +N NL+
Sbjct: 551 YPKDFSLLDFKETLKRTSSNQLGLSLEPYLNNPLFNALNDAFNSNAFLNVINLDAITQNP 610
Query: 125 KDEELVVYHL 134
KD L+ Y+L
Sbjct: 611 KDLGLLAYYL 620
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 22.3 bits (46), Expect = 5.9
Identities = 15/72 (20%), Positives = 32/72 (43%)
Query: 57 LLLEQLLENNLGHFTFESEFALLKDKETLNLSQIKQIGVLKVLTYEMIQTLKNQIIHLAQ 116
L++E + E + A +K K+ L + + I +L VL ++ +QI++
Sbjct: 404 LMIEDAKKRITSPEELEQKIAHIKAKQLLGIEILPDIHILAVLNMILMGDGSSQILNQDS 463
Query: 117 VVNEENLEKDEE 128
+ + D+E
Sbjct: 464 LSGFDGKVNDKE 475
>ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 764
Score = 22.3 bits (46), Expect = 5.9
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 79 LKDKETLNLSQIKQIGVLKVLTYEMIQTLKNQIIHLAQVVNEE--NLEKDEELVVYHLNF 136
LKD + NLS+I + + K + +++ I L + +N+E N + L + F
Sbjct: 699 LKDAQIPNLSEILPLDIFKESGNTIALSVRCVIHSLEKTLNDEEVNSAVQKALEILEKEF 758
Query: 137 TSR 139
+R
Sbjct: 759 NAR 761
>ref|NP_222996.1| DIAMINOPIMELATE DECARBOXYLASE [Helicobacter pylori J99]
Length = 405
Score = 22.3 bits (46), Expect = 5.9
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 8 KKSIQIDETL-LNVKE-HLEKFYSNKEQETIAQTLENETEIS 47
K + +I++ L LN+ ++E F K ETIAQ+L + IS
Sbjct: 92 KSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARIS 133
>ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 847
Score = 21.9 bits (45), Expect = 7.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 115 AQVVNEENLEKDEELV 130
A+ +N+E LEK E+LV
Sbjct: 591 AKALNDEELEKVEDLV 606
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 21.9 bits (45), Expect = 7.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 113 HLAQVVNEENLEKDEELVVYHLNFTSRNNLTKY 145
H A + + +D E +VY+ N T+++ L Y
Sbjct: 338 HEAIRITHPHTTEDLESIVYNANITNQDALKLY 370
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.133 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171,400
Number of Sequences: 1491
Number of extensions: 7868
Number of successful extensions: 46
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 20
length of query: 150
length of database: 494,079
effective HSP length: 70
effective length of query: 80
effective length of database: 389,709
effective search space: 31176720
effective search space used: 31176720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)