BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645085|ref|NP_207255.1| hypothetical protein
[Helicobacter pylori 26695]
(87 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222736.1| putative [Helicobacter pylori J99] 117 3e-29
ref|NP_223980.1| putative [Helicobacter pylori J99] 24 0.48
ref|NP_223874.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223770.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_223806.1| putative [Helicobacter pylori J99] 22 2.4
ref|NP_222741.1| putative [Helicobacter pylori J99] 22 2.4
ref|NP_224003.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_222842.1| L-serine transporter, similar to E. coli n... 22 3.1
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 20 6.9
ref|NP_224179.1| Ubiquinol cytochrome c oxidoreductase, cyt... 20 9.1
ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter... 20 9.1
ref|NP_223775.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter... 20 9.1
ref|NP_223485.1| ATP synthase F0, subunit a [Helicobacter p... 20 9.1
ref|NP_223144.1| Molybdate ABC transporter, permease [Helic... 20 9.1
ref|NP_222859.1| putative [Helicobacter pylori J99] 20 9.1
>ref|NP_222736.1| putative [Helicobacter pylori J99]
Length = 87
Score = 117 bits (294), Expect = 3e-29
Identities = 54/87 (62%), Positives = 72/87 (82%)
Query: 1 MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSI 60
M ++ SV NL+EIS KEKFLWLNAKS+L+S F PFI++PW+D+L++F+LY+ FL +FS+
Sbjct: 1 MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSV 60
Query: 61 AEFFDEDISDILIAHSKIKTKANSFYA 87
EFFDEDI+DI+IA SKIKTK + A
Sbjct: 61 LEFFDEDIADIIIAKSKIKTKTKCYRA 87
>ref|NP_223980.1| putative [Helicobacter pylori J99]
Length = 242
Score = 24.3 bits (51), Expect = 0.48
Identities = 17/67 (25%), Positives = 29/67 (42%), Gaps = 14/67 (20%)
Query: 33 FVPFIMIPWLDILNSF--------------VLYVCFLLIFSIAEFFDEDISDILIAHSKI 78
F+ I I +LDI+ S V+ + +L + FF + + D + H ++
Sbjct: 130 FITLIEIMFLDIVFSLDSVITAIGIAKHLEVMALAIILSVIVMMFFSKIVGDFIEKHYRV 189
Query: 79 KTKANSF 85
KT A F
Sbjct: 190 KTLAFVF 196
>ref|NP_223874.1| putative [Helicobacter pylori J99]
Length = 415
Score = 23.1 bits (48), Expect = 1.1
Identities = 11/35 (31%), Positives = 21/35 (59%)
Query: 4 VGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIM 38
+G+ +S L + K +L L+A +FL F+P ++
Sbjct: 144 LGLLISYLYIKTQKIPYLTLSACAFLDGAFIPLLL 178
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 22.3 bits (46), Expect = 1.8
Identities = 9/21 (42%), Positives = 12/21 (56%)
Query: 10 NLKEISSKEKFLWLNAKSFLL 30
N +KE+ LWL A S+ L
Sbjct: 219 NKSYAEAKERLLWLEANSYRL 239
>ref|NP_223806.1| putative [Helicobacter pylori J99]
Length = 193
Score = 21.9 bits (45), Expect = 2.4
Identities = 13/32 (40%), Positives = 16/32 (49%), Gaps = 4/32 (12%)
Query: 18 EKFLWLNAKS----FLLSGFVPFIMIPWLDIL 45
+KFLWLN S L+ G V F W+ L
Sbjct: 127 KKFLWLNVFSSFLWALIVGSVSFQASDWVKTL 158
>ref|NP_222741.1| putative [Helicobacter pylori J99]
Length = 191
Score = 21.9 bits (45), Expect = 2.4
Identities = 9/21 (42%), Positives = 15/21 (70%)
Query: 3 LVGISVSNLKEISSKEKFLWL 23
+VG++V+ L S +K+LWL
Sbjct: 128 MVGLAVAFLMRRYSVKKYLWL 148
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 21.6 bits (44), Expect = 3.1
Identities = 9/43 (20%), Positives = 19/43 (43%)
Query: 45 LNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKTKANSFYA 87
LN+ C + I I E+ E + + + + K S+++
Sbjct: 461 LNTSDKVFCLIRIGDITEWIREKLKSVKVVSKNLSFKEESYFS 503
>ref|NP_222842.1| L-serine transporter, similar to E. coli nhaB [Helicobacter pylori
J99]
Length = 413
Score = 21.6 bits (44), Expect = 3.1
Identities = 7/23 (30%), Positives = 12/23 (51%)
Query: 22 WLNAKSFLLSGFVPFIMIPWLDI 44
W A F++ F F++ WL +
Sbjct: 181 WQGANLFVVPSFKEFVLAIWLTL 203
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 20.4 bits (41), Expect = 6.9
Identities = 13/39 (33%), Positives = 18/39 (45%), Gaps = 2/39 (5%)
Query: 6 ISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDI 44
IS+ + +I K+ F LNA LL + F W I
Sbjct: 430 ISIEYIHKILRKDDFQGLNAMQVLLG--IMFFPNDWRSI 466
>ref|NP_224179.1| Ubiquinol cytochrome c oxidoreductase, cytochrome c1 subunit
[Helicobacter pylori J99]
Length = 285
Score = 20.0 bits (40), Expect = 9.1
Identities = 8/23 (34%), Positives = 15/23 (64%)
Query: 59 SIAEFFDEDISDILIAHSKIKTK 81
+ ++F D+D+SDI+ + I K
Sbjct: 134 AFSQFSDQDLSDIVAYLTSILPK 156
>ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter pylori J99]
Length = 803
Score = 20.0 bits (40), Expect = 9.1
Identities = 7/12 (58%), Positives = 9/12 (74%)
Query: 21 LWLNAKSFLLSG 32
+WL +K FLL G
Sbjct: 1 MWLKSKFFLLMG 12
>ref|NP_223775.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 189
Score = 20.0 bits (40), Expect = 9.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 28 FLLSGFVPFIMIPWLDILNSFVLYV 52
F SGFV +++ W+ + L+V
Sbjct: 9 FNKSGFVTTLVLVWISLYLVMTLWV 33
>ref|NP_223485.1| ATP synthase F0, subunit a [Helicobacter pylori J99]
Length = 226
Score = 20.0 bits (40), Expect = 9.1
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 35 PFIMIPWLDILNSFVLYVCFLLIFSIAEFFDE 66
PF+++ ++ IL +FV + + + A DE
Sbjct: 193 PFMVLFFMGILQAFVFMILTYVYLAGAVLTDE 224
>ref|NP_223144.1| Molybdate ABC transporter, permease [Helicobacter pylori J99]
Length = 224
Score = 20.0 bits (40), Expect = 9.1
Identities = 11/29 (37%), Positives = 15/29 (50%)
Query: 44 ILNSFVLYVCFLLIFSIAEFFDEDISDIL 72
+L VL LLIFS + F + D+L
Sbjct: 54 VLPPSVLGFYLLLIFSPSSFLGAFLQDVL 82
>ref|NP_222859.1| putative [Helicobacter pylori J99]
Length = 193
Score = 20.0 bits (40), Expect = 9.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 58 FSIAEFFDEDISDILIAHSKIKTKANSFYA 87
FS D+ I + L+ ++ I K+N+ YA
Sbjct: 86 FSKGTHGDKKIQENLLNNALILEKSNTLYA 115
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.329 0.143 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,792
Number of Sequences: 1491
Number of extensions: 3140
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 87
length of database: 494,079
effective HSP length: 63
effective length of query: 24
effective length of database: 400,146
effective search space: 9603504
effective search space used: 9603504
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 40 (20.0 bits)