BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645086|ref|NP_207256.1| hypothetical protein
[Helicobacter pylori 26695]
(78 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223176.1| putative [Helicobacter pylori J99] 27 0.10
ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE... 25 0.29
ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter ... 24 0.50
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 24 0.50
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 24 0.65
ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN ... 23 1.1
ref|NP_224119.1| putative ferredoxin-like protein [Helicoba... 23 1.4
ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99] 23 1.4
ref|NP_224211.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 22 2.5
ref|NP_222845.1| BACTERIOFERRITIN COMIGRATORY PROTEIN [Heli... 22 3.2
ref|NP_222831.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_223197.1| cag island protein [Helicobacter pylori J99] 20 7.2
ref|NP_223060.1| ASPARTATE CARBAMOYLTRANSFERASE CATALYTIC C... 20 7.2
ref|NP_222814.1| putative [Helicobacter pylori J99] 20 7.2
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 26.6 bits (57), Expect = 0.10
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 35 KKEAHLDAYILVTNIRNIVDELHKEVVLANQSNKNTPKRKRKS 77
KKE +DA N R I E KE ANQ +N P + K+
Sbjct: 249 KKEERIDAR---ENKREIKQEAIKEPKKANQGTENAPTLEEKN 288
>ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE [Helicobacter pylori
J99]
Length = 340
Score = 25.0 bits (53), Expect = 0.29
Identities = 13/30 (43%), Positives = 18/30 (59%)
Query: 10 PNPLTISYNLEQAISSLKSSVNALMKKEAH 39
P PL S NL + S LK++V ++K AH
Sbjct: 200 PIPLKNSPNLAFSFSGLKNAVRLEVEKNAH 229
>ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter pylori J99]
Length = 389
Score = 24.3 bits (51), Expect = 0.50
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 12 PLTISYNLEQ------AISSLKSSVNALMKKEAHLDAYILVTNIRNIVDELHKEVVLANQ 65
P+ + YN Q + LKS V ++ E H + I + ++ I++ L E L +
Sbjct: 302 PIVLIYNCYQDKDAFLVLEILKSVVKKVLILELHNERIIQLEKLKGILETLGLEHALFEE 361
Query: 66 SNKN 69
+N
Sbjct: 362 LKEN 365
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 24.3 bits (51), Expect = 0.50
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 2 QKEVLVEKPNPLTISYNLEQAISSLKSSVNALMKKEAHLDAYILVTNIRNIVDELHKEVV 61
QK +EK + +T Y +++S + E +LD L+ ++ +++L KE +
Sbjct: 771 QKLAKLEKVSVIT--YKPLKSVSDVGEFCQTYADLE-NLDLSPLIARLKKQLEKLEKEKL 827
Query: 62 LANQSNKNTPKRKRKS 77
N N+N K KS
Sbjct: 828 KLNLHNENFVKNAPKS 843
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 23.9 bits (50), Expect = 0.65
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 35 KKEAHLDAYILVTNIRNIVDELHKEVVLANQSNK 68
K+EA++DAY L N+R + +V + +K
Sbjct: 753 KEEAYIDAYSLQKNLRTNQNTSFNQVPIVKVGDK 786
>ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Helicobacter pylori J99]
Length = 457
Score = 23.1 bits (48), Expect = 1.1
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 10 PNP-LTISYNLE----QAISSLKSSVNALMKKEAHLDAYILVTNIRNIVDELHKEVVLAN 64
PNP L+++ L+ +IS + SSV ++++E L I+N ++EL+ + N
Sbjct: 395 PNPTLSLAQFLDLKDHSSISKMYSSVKKMLEEEKSPFILSLREEIKNRLNELNDKKTAFN 454
Query: 65 QS 66
S
Sbjct: 455 SS 456
>ref|NP_224119.1| putative ferredoxin-like protein [Helicobacter pylori J99]
Length = 458
Score = 22.7 bits (47), Expect = 1.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 49 IRNIVDELHKEVVLANQSNKNTPKRK 74
I + +LHK++ +S KNTP K
Sbjct: 105 IETKIFKLHKKISNKQESPKNTPSYK 130
>ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99]
Length = 425
Score = 22.7 bits (47), Expect = 1.4
Identities = 17/65 (26%), Positives = 27/65 (41%)
Query: 2 QKEVLVEKPNPLTISYNLEQAISSLKSSVNALMKKEAHLDAYILVTNIRNIVDELHKEVV 61
QK+ P P T S L+ L V + + L L+T IR + L KE +
Sbjct: 255 QKDKEKAPPKPFTTSNLLKDGARILGMGVKQIQEHAQKLFEAGLITYIRTDSEALSKEYL 314
Query: 62 LANQS 66
+++
Sbjct: 315 QEHEA 319
>ref|NP_224211.1| putative [Helicobacter pylori J99]
Length = 209
Score = 22.3 bits (46), Expect = 1.9
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 1 MQKEVLVEKPNPLTISYNLEQAISSLKSSVNALMKKEA 38
+ KE+L + + L I+YN A S ++ ++ + + K++
Sbjct: 47 LYKEILCDACDHLDINYNERSATSLIEQNMLSKLLKDS 84
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 21.9 bits (45), Expect = 2.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 20 EQAISSLKSSVNALMKKEAHLDAYI 44
E+ L+ NAL +KEA LD +I
Sbjct: 647 EKETKELEELENALNEKEALLDEFI 671
>ref|NP_222845.1| BACTERIOFERRITIN COMIGRATORY PROTEIN [Helicobacter pylori J99]
Length = 152
Score = 21.6 bits (44), Expect = 3.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 51 NIVDELHKEVVLANQSNKNTP 71
++ D LHK+VVL NTP
Sbjct: 24 SLKDLLHKKVVLYFYPKDNTP 44
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 20.8 bits (42), Expect = 5.5
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 24 SSLKSSVNALMKKEAHLDAYILVTNIRNIVDELHKEVVLANQSNKNTPK 72
S ++ + + +AHL + ++ I +++KE+ + K T K
Sbjct: 355 SKAQAKMLEMRNPQAHLPTSQSLLFVQKIFADINKEIEAVANTEKKTEK 403
>ref|NP_223197.1| cag island protein [Helicobacter pylori J99]
Length = 252
Score = 20.4 bits (41), Expect = 7.2
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 48 NIRNIVDELHKEVVLAN----QSNKNTP 71
NIR VD++ E ++++ + KN+P
Sbjct: 139 NIRQFVDKVRAEAIISSNIQREKVKNSP 166
>ref|NP_223060.1| ASPARTATE CARBAMOYLTRANSFERASE CATALYTIC CHAIN [Helicobacter pylori
J99]
Length = 307
Score = 20.4 bits (41), Expect = 7.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 3 KEVLVEKPNPLTISYNLEQAISSLKSS 29
KEV++ P P+ ++E A+ K S
Sbjct: 258 KEVIILHPGPVHRDIDIESAVLEDKRS 284
>ref|NP_222814.1| putative [Helicobacter pylori J99]
Length = 253
Score = 20.4 bits (41), Expect = 7.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 8 EKPNPLTISYNLEQ 21
+KP PLTI N E+
Sbjct: 39 DKPKPLTIDKNNEK 52
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.308 0.124 0.313
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,392
Number of Sequences: 1491
Number of extensions: 2753
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 78
length of database: 494,079
effective HSP length: 54
effective length of query: 24
effective length of database: 413,565
effective search space: 9925560
effective search space used: 9925560
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 40 (20.0 bits)