BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645088|ref|NP_207258.1| hypothetical protein
[Helicobacter pylori 26695]
(162 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222756.1| DNA transformation competancy [Helicobacte... 37 3e-04
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 32 0.008
ref|NP_223183.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 32 0.011
ref|NP_223656.1| putative [Helicobacter pylori J99] 31 0.014
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 30 0.025
ref|NP_222912.1| putative [Helicobacter pylori J99] 30 0.032
ref|NP_223773.1| putative [Helicobacter pylori J99] 30 0.042
ref|NP_223025.1| putative [Helicobacter pylori J99] 30 0.042
ref|NP_223830.1| putative [Helicobacter pylori J99] 29 0.055
ref|NP_223646.1| putative [Helicobacter pylori J99] 29 0.055
ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Heli... 28 0.12
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 28 0.12
ref|NP_223038.1| putative [Helicobacter pylori J99] 27 0.21
ref|NP_224040.1| DIMETHYLADENOSINE TRANSFERASE [Helicobacte... 27 0.27
ref|NP_223759.1| putative [Helicobacter pylori J99] 27 0.27
ref|NP_223206.1| cag island protein [Helicobacter pylori J99] 27 0.27
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 27 0.27
ref|NP_223889.1| putative [Helicobacter pylori J99] 27 0.36
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 26 0.46
ref|NP_223610.1| putative [Helicobacter pylori J99] 26 0.61
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 26 0.61
ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter ... 25 0.79
ref|NP_223788.1| putative [Helicobacter pylori J99] 25 1.0
ref|NP_223384.1| putative [Helicobacter pylori J99] 25 1.4
ref|NP_223121.1| putative [Helicobacter pylori J99] 24 1.8
ref|NP_223047.1| 1-DEOXYXYLULOSE-5-PHOSPHATE SYNTHASE [Heli... 24 1.8
ref|NP_223688.1| putative PARALOG OF HpaA [Helicobacter pyl... 24 2.3
ref|NP_223516.1| putative [Helicobacter pylori J99] 24 2.3
ref|NP_223089.1| putative [Helicobacter pylori J99] 24 2.3
ref|NP_223019.1| putative [Helicobacter pylori J99] 24 2.3
ref|NP_223729.1| putative TYPE II DNA MODIFICATION ENZYME (... 23 3.0
ref|NP_223659.1| putative [Helicobacter pylori J99] 23 3.0
ref|NP_223465.1| putative [Helicobacter pylori J99] 23 3.0
ref|NP_222895.1| putative [Helicobacter pylori J99] 23 3.0
ref|NP_223780.1| putative ATP synthase F1, subunit delta [H... 23 3.9
ref|NP_223731.1| putative [Helicobacter pylori J99] 23 3.9
ref|NP_223614.1| putative [Helicobacter pylori J99] 23 3.9
ref|NP_223590.1| putative [Helicobacter pylori J99] 23 3.9
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 23 3.9
ref|NP_222739.1| putative chemotaxis protein [Helicobacter ... 23 3.9
ref|NP_223915.1| putative [Helicobacter pylori J99] 23 5.1
ref|NP_223645.1| putative [Helicobacter pylori J99] 23 5.1
ref|NP_223460.1| putative [Helicobacter pylori J99] 23 5.1
ref|NP_223260.1| putative [Helicobacter pylori J99] 23 5.1
ref|NP_224100.1| putative [Helicobacter pylori J99] 22 6.7
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 22 6.7
ref|NP_223787.1| putative [Helicobacter pylori J99] 22 6.7
ref|NP_223065.1| putative [Helicobacter pylori J99] 22 6.7
ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 22 6.7
ref|NP_222827.1| putative [Helicobacter pylori J99] 22 6.7
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 22 8.8
ref|NP_223176.1| putative [Helicobacter pylori J99] 22 8.8
ref|NP_223158.1| putative [Helicobacter pylori J99] 22 8.8
ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Heli... 22 8.8
>ref|NP_222756.1| DNA transformation competancy [Helicobacter pylori J99]
Length = 247
Score = 36.6 bits (83), Expect = 3e-04
Identities = 18/43 (41%), Positives = 28/43 (64%), Gaps = 2/43 (4%)
Query: 116 INTQLESFKKDELDLSSVFEIQRKNTQIAYRLAIGGLIGIIAL 158
+ ++L F ++LD+ SVF ++R +IAYRL GL+ IAL
Sbjct: 25 LESKLSGFSVNDLDMQSVFRLERNRLKIAYRLL--GLMSFIAL 65
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 32.0 bits (71), Expect = 0.008
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 5 QELREHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQE 64
+E +E LK L + KE++K Y C S E EK + E+ L + K+ E
Sbjct: 552 EERKECLKNLPKDLQSDILAKESLKAYKDC----ASQAKTEAEKKECEKLLTPEAKKLLE 607
Query: 65 ELIKNIQTSI----------AKNQELEKISFEKWENKIQE 94
E K + A+ +E EK+ + + K++E
Sbjct: 608 EEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEE 647
Score = 31.6 bits (70), Expect = 0.011
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 5 QELREHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQE 64
+E +E LK+L + KE+++ Y C +S E E+ + E+ L + ++ E
Sbjct: 698 EERKECLKDLPKDLQKKVLAKESVRVYLDC----VSKAKNEAERKECEKLLTPEARKLLE 753
Query: 65 ELIKNIQT----SIAKNQELEKISFEKWENKIQERVLPKLKRIV 104
E K+++ + E EK EK ++L + K+ V
Sbjct: 754 EAKKSVKAYKDCVLRARNEKEKQECEKLLTPEARKLLEESKKSV 797
Score = 29.6 bits (65), Expect = 0.042
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 44 EEQEKNQQEEFLEQDTKENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKRI 103
E +EK ++E L+++ +E ++ IKN +T KN+ L+ +S E E +++++ L LK
Sbjct: 422 EIREKFRKELELQKELQE-YKDCIKNAKTEAEKNECLKGLSKEAIE-RLKQQALDCLKNA 479
Query: 104 VTHKLQESITSSINTQLE 121
T + ++ +I L+
Sbjct: 480 KTDEERKECLKNIPQDLQ 497
>ref|NP_223183.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 443
Score = 31.6 bits (70), Expect = 0.011
Identities = 24/111 (21%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 37 MSLSMFLEEQEKNQQEEFLEQDTKENQEELIKNIQTSIAKNQELEKISFEKWE---NKIQ 93
M L E K + F+ +D + +L+ N + +N+ E++ + E KI
Sbjct: 76 MKLPFVKVEASKYTEVGFVGRDVESMVRDLVNN-SVLLVENEHKERLKDKIEEAVVEKIA 134
Query: 94 ERVLPKLKRIVTHKLQESITSSINTQLESFKKDELDLSSV-FEIQRKNTQI 143
+++LP L V+ + ++ +S+ + + ELD + E+++K+ +I
Sbjct: 135 KKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSIEI 185
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 31.2 bits (69), Expect = 0.014
Identities = 26/105 (24%), Positives = 50/105 (46%), Gaps = 10/105 (9%)
Query: 22 SFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQEELIKNIQTSIAKNQELE 81
+ +KE +EY + F + EE++ Q + ++ E++EEL K I+ I + ++
Sbjct: 70 NLSKEFPQEYREKIFECV----EEEKHKQALNLINKEDTEDKEELAKKIK-EIKEKAKVL 124
Query: 82 KISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQLESFKKD 126
+ F +E K + P K +LQ + ++ + ESF D
Sbjct: 125 RQKFMAFEMKEHSKEFPNKK-----QLQTMLENAFDNGAESFIDD 164
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 30.4 bits (67), Expect = 0.025
Identities = 20/87 (22%), Positives = 45/87 (50%), Gaps = 2/87 (2%)
Query: 44 EEQEKNQQEEFLEQDTKENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKRI 103
++ E+ +E FL++ K+ Q+EL + Q NQ +K+ E + ++E ++K+
Sbjct: 217 QKMEQTNKEYFLKEQLKQIQKELGTDKQRDEDLNQYYQKL--ESIKPFLKEEAFKEIKKQ 274
Query: 104 VTHKLQESITSSINTQLESFKKDELDL 130
+ + SS + L+++ + LD+
Sbjct: 275 IDRLSRTHADSSDSATLQNYVETMLDV 301
Score = 24.6 bits (52), Expect = 1.4
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 90 NKIQERVLPKLKRIV----THKLQESITSSINTQLESFKKDELDLSSVFEIQRK 139
N ++R+L + ++ T KLQ+ I S ++ ++E K+ + +IQ++
Sbjct: 185 NNTEQRLLDLIDIVIEETKTQKLQKEIKSKVHQKMEQTNKEYFLKEQLKQIQKE 238
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 30.0 bits (66), Expect = 0.032
Identities = 24/76 (31%), Positives = 36/76 (46%), Gaps = 7/76 (9%)
Query: 4 LQELREHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQ 63
L + H K++E+ F K YAK M LSM + + E+ +E+ TK N
Sbjct: 846 LSDCDRHFKQIEDCFSANDRNK-----YAKNKQMELSMAFKTRLLYGGEDAIEKQTKRNF 900
Query: 64 EELIKNI--QTSIAKN 77
+L K I T++ KN
Sbjct: 901 LKLFKWIAWATNLIKN 916
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 29.6 bits (65), Expect = 0.042
Identities = 29/121 (23%), Positives = 56/121 (45%), Gaps = 33/121 (27%)
Query: 25 KENIKEYAKCFFMSLSMFLE--------EQEKNQQEEFL----EQDTKENQE--ELIKNI 70
KE +E + F SL+ F E +++KN+QEE +Q K+NQE E++K +
Sbjct: 83 KEEPEESLEDIFSSLNDFQEKTDKNAQKDEQKNEQEEQRRLREQQRLKQNQENQEMLKGL 142
Query: 71 QTSIAK-NQELEKI------------------SFEKWENKIQERVLPKLKRIVTHKLQES 111
Q ++ + Q+LE + ++++W +I + + + + HK S
Sbjct: 143 QQNLNQFTQKLESVKNKTLDLQIPKQDGVDEKAYQEWYAQIYQILYKGWRGVFYHKASVS 202
Query: 112 I 112
+
Sbjct: 203 V 203
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 29.6 bits (65), Expect = 0.042
Identities = 33/139 (23%), Positives = 63/139 (44%), Gaps = 8/139 (5%)
Query: 7 LREHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQEEL 66
L + ELEN ++ + KE + E ++ QEE +++ KE QEE+
Sbjct: 134 LETNWDELENLGDLEALAKEEPNNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEV 193
Query: 67 IKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKRIVTHKL---QESITSSINTQLESF 123
+ + +A+N + E+ + +++ Q V P V+ +L +E T TQ +
Sbjct: 194 KEKQKQEVAENPQDEE---KPKDDETQGSVEPPKDEEVSKELETQEELETPKEETQEQEP 250
Query: 124 KKDELDLSSVFEIQRKNTQ 142
K+E + E +++ TQ
Sbjct: 251 IKEE--TQEIKEEKQEKTQ 267
Score = 28.5 bits (62), Expect = 0.094
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 46 QEKNQQEEFLEQDTKENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKRIVT 105
+E+ Q++E ++++T+E +EE + Q S QELE + ++ +IQE + + T
Sbjct: 242 KEETQEQEPIKEETQEIKEEKQEKTQDS-PSAQELE--AMQELVKEIQENSNDQENKKET 298
Query: 106 HKLQESITS--SINTQLESFKKDE 127
+ QE+ + I TQ K+E
Sbjct: 299 QETQENTETPQDIETQELEIPKEE 322
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 29.3 bits (64), Expect = 0.055
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 44 EEQEKNQQEEFLEQDTKENQEELIKNIQTSIAKNQELEKISFEKWENKI---QERVLPKL 100
EEQ+ Q+++ EQ+ ++ ++E K Q QE +K S + N+I QE+ +
Sbjct: 127 EEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQ 186
Query: 101 KRIVTHKLQESITS 114
++ T+ Q+ + +
Sbjct: 187 EKQKTNNTQKDLVN 200
Score = 25.0 bits (53), Expect = 1.0
Identities = 21/82 (25%), Positives = 39/82 (46%), Gaps = 2/82 (2%)
Query: 47 EKNQQEEFLEQDTKENQEELIKNIQTSIAKNQELEKISFEKWE-NKIQERVLPKLKRIVT 105
E Q+E+ EQ+ ++ ++E K Q QE +K EK + + I+ K+++
Sbjct: 123 ELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQ-EQ 181
Query: 106 HKLQESITSSINTQLESFKKDE 127
K ++ + NTQ + K E
Sbjct: 182 QKTEQEKQKTNNTQKDLVNKAE 203
>ref|NP_223646.1| putative [Helicobacter pylori J99]
Length = 150
Score = 29.3 bits (64), Expect = 0.055
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Query: 4 LQELREHLKELENSFEIGSFTKENIKEYAK 33
+ +L E +KELENS EI TK+NI +Y +
Sbjct: 5 ITKLPEKIKELENSIEI---TKKNIAKYTR 31
>ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
Length = 331
Score = 28.1 bits (61), Expect = 0.12
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 100 LKRIVTHKLQESITSSINTQ-LESFKKDELDLSSVFEIQRKNTQIAYRLAIGGL 152
LK + K +ES+ +N + L+SF K LD +++N I + +GGL
Sbjct: 119 LKNLAFAKTKESLPRHLNDKDLKSFLKTLLDYKPATSFEKRNKCILLIVILGGL 172
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 28.1 bits (61), Expect = 0.12
Identities = 17/60 (28%), Positives = 30/60 (49%), Gaps = 2/60 (3%)
Query: 38 SLSMFLEEQEKNQQEEFLEQDTKENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVL 97
+L +F+E+ KN + KENQE + +N KN + K E+ + K +E ++
Sbjct: 151 NLQVFIED--KNYYTNAFIKPQKENQENMSENAPKDAQKNNKPLKEEKEETKEKEEETII 208
>ref|NP_223038.1| putative [Helicobacter pylori J99]
Length = 112
Score = 27.3 bits (59), Expect = 0.21
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 2/53 (3%)
Query: 48 KNQQEEFLEQDTKENQEELIK-NIQTSIAKNQELEKISFEKWENKIQERVLPK 99
K + ++ EQ K ++ LIK N+Q S +EL KI FE E ++ E++ K
Sbjct: 35 KEKSQKIREQAVKIVEKRLIKENMQLSDFNEEEL-KIMFEAEEKRLLEQIHAK 86
Score = 23.5 bits (49), Expect = 3.0
Identities = 12/58 (20%), Positives = 27/58 (45%), Gaps = 11/58 (18%)
Query: 14 LENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQEELIKNIQ 71
++ + ++ F +E +K + E +EK E+ ++ KE QE+ K+ +
Sbjct: 54 IKENMQLSDFNEEELK-----------IMFEAEEKRLLEQIHAKELKEKQEKTTKHFK 100
>ref|NP_224040.1| DIMETHYLADENOSINE TRANSFERASE [Helicobacter pylori J99]
Length = 271
Score = 26.9 bits (58), Expect = 0.27
Identities = 19/74 (25%), Positives = 36/74 (47%), Gaps = 5/74 (6%)
Query: 12 KELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQ--EEFLEQDTKENQEELIKN 69
K + FE+ KE +KE A F E +K + E+FL+ ++ L N
Sbjct: 170 KVFSSVFEV---IKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNN 226
Query: 70 IQTSIAKNQELEKI 83
++ S++ ++L+K+
Sbjct: 227 LKKSVSYKEKLDKV 240
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 26.9 bits (58), Expect = 0.27
Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 21/121 (17%)
Query: 9 EHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQEELIK 68
E LK+L+N+ + E ++ KC L E L D +N E+
Sbjct: 25 ELLKQLQNALRSNAHFSEQVELSLKCIVRIL------------EVLLSLDFFKNANEIDS 72
Query: 69 NIQTSI---AKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQLESFKK 125
+++ SI E K+ +++E E H ++ +T+++N E+ K
Sbjct: 73 SLRNSIEWLTNAGESLKLKMKEYERFFSE------FNTSMHANEQEVTNTLNANAENIKS 126
Query: 126 D 126
+
Sbjct: 127 E 127
>ref|NP_223206.1| cag island protein [Helicobacter pylori J99]
Length = 381
Score = 26.9 bits (58), Expect = 0.27
Identities = 20/77 (25%), Positives = 37/77 (47%), Gaps = 14/77 (18%)
Query: 38 SLSMFLEEQEKNQQEEFLEQDTKENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVL 97
++ M +E+Q+ N Q E I+N+Q ++ KN E+ K+ + +N + E +
Sbjct: 123 NVKMIVEKQKINTQTE-------------IQNMQIALQKNNEIIKLKMNQ-QNALLEALK 168
Query: 98 PKLKRIVTHKLQESITS 114
+ VT K Q + S
Sbjct: 169 NSFEPSVTLKTQMEMLS 185
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 26.9 bits (58), Expect = 0.27
Identities = 26/119 (21%), Positives = 56/119 (46%), Gaps = 18/119 (15%)
Query: 43 LEEQEKNQQEEFLEQDTKENQEELIKNIQTSI-----AKNQELEKISFEKWENKIQ--ER 95
++EQE + F + KE+ EE +K +QT + A L+ + K+ N ++ E
Sbjct: 1 MKEQEWDLSALF---ENKESAEEFLKTLQTEVQEFENAYQNNLKNLDAAKFANTLKHYEN 57
Query: 96 VLPKLKRIVTHKLQESITSSINTQLESFKKDELDLSSV------FEIQRKNTQIAYRLA 148
+ K+ R + + + + + + + + + E+ +++ FEI+ KN +LA
Sbjct: 58 LSEKISRAMAY--AQLLFAKNTKEAKFYSQCEMACANIQQHLLFFEIEFKNLDAKKQLA 114
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 26.6 bits (57), Expect = 0.36
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 25 KENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQEELIKNIQTSIAKNQELEK 82
K+ IK+ K + ++++ K + ++ ++Q+TK+ QE+ K Q S++ Q +K
Sbjct: 91 KQEIKQEIK---QEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQK 145
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 26.2 bits (56), Expect = 0.46
Identities = 22/93 (23%), Positives = 42/93 (44%), Gaps = 2/93 (2%)
Query: 43 LEEQEKNQQEEFLEQDTKENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKR 102
L E+E + + E Q K N + I T+I ++ + FE + +I +R+
Sbjct: 150 LGEEEASARFEKYSQALKSNYIQYISIKITTIFS--QINILDFEYSKKEIVKRLDALYAL 207
Query: 103 IVTHKLQESITSSINTQLESFKKDELDLSSVFE 135
+ + ++ + IN +E F+ EL + S E
Sbjct: 208 ALEEEKKQGMPKFINLDMEEFRDLELTVESFME 240
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 25.8 bits (55), Expect = 0.61
Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Query: 39 LSMFLEEQEKNQQEEFLEQDTKENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVLP 98
L +E +++ + LE +E +++L K + AKN+ + + EK K+Q
Sbjct: 5 LKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQV---- 60
Query: 99 KLKRIVTHKLQESITSSINTQLESFKKDELDLSSVFEIQRKNTQ 142
E N ++ S +K ++ S E++ N +
Sbjct: 61 --------SKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIE 96
Score = 23.5 bits (49), Expect = 3.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 44 EEQEKNQQEEFLEQDTKENQEEL 66
E Q K QEE E+ +E+QE +
Sbjct: 245 ESQPKESQEESQEESQEESQESV 267
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 25.8 bits (55), Expect = 0.61
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 38 SLSMFLEEQEKNQQEEFLEQDTKENQEELIKNIQTSIAKNQELEKISFEKWENKIQE 94
S ++ E+Q Q L Q+ +N+ + ++ + + AK L K EK++N+I++
Sbjct: 376 SFYLYKEDQLTGSQRA-LSQEEIQNKVDFMEFLAQNNAKLDNLSKKEKEKFQNEIED 431
>ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter pylori J99]
Length = 389
Score = 25.4 bits (54), Expect = 0.79
Identities = 16/62 (25%), Positives = 33/62 (52%), Gaps = 6/62 (9%)
Query: 63 QEELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQLES 122
Q+EL+ N+ IAK++ + I +N+I + V ++R H L + ++ L++
Sbjct: 192 QQELVLNVAQKIAKDKHAQLIVV---QNEISKGVSDYIER---HHLAHFLAMNLEVALKA 245
Query: 123 FK 124
F+
Sbjct: 246 FE 247
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 25.0 bits (53), Expect = 1.0
Identities = 21/100 (21%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 4 LQELREHLKELENSFEIGSFTKENIK-EYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKEN 62
+QEL + E+E + + +K E K L + E+ EK E+ + +
Sbjct: 128 VQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLELEREKIEKALHEK--NELKFKQ 185
Query: 63 QEELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKR 102
QEE ++ ++ + Q ++S ++++ ++QE + + R
Sbjct: 186 QEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAIEEFLR 225
>ref|NP_223384.1| putative [Helicobacter pylori J99]
Length = 355
Score = 24.6 bits (52), Expect = 1.4
Identities = 14/65 (21%), Positives = 31/65 (47%)
Query: 75 AKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQLESFKKDELDLSSVF 134
AK L I K+Q+ + LKR + + Q+S++ N + ++ + L+ V
Sbjct: 271 AKKPNLGSIKLLLKHEKVQDHLEENLKRFINYPFQKSLSLIQNIRNKAVHQKAPSLNEVE 330
Query: 135 EIQRK 139
+++ +
Sbjct: 331 KLRNE 335
>ref|NP_223121.1| putative [Helicobacter pylori J99]
Length = 288
Score = 24.3 bits (51), Expect = 1.8
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 92 IQERVLPKLKRIVTHKLQESITSSINTQLESFKKDELDLSSVFEIQRKNTQIAYRL 147
+ + LPK R T+ LQE + TQ+ S + ++F I R Y+L
Sbjct: 32 LSNKTLPK--RFATYSLQEVGVIFLTTQILSIMRKTRCSKTLFFITRGRESFRYQL 85
>ref|NP_223047.1| 1-DEOXYXYLULOSE-5-PHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 618
Score = 24.3 bits (51), Expect = 1.8
Identities = 21/71 (29%), Positives = 33/71 (45%), Gaps = 6/71 (8%)
Query: 60 KENQEELIKNIQTSIAKNQELEKISFEKWENK---IQERVLPKLKRIVTHKLQESITSSI 116
KE +E ++ + QT K ++ + +EKW + L K + T E+ +
Sbjct: 260 KELKEPVLIHAQTLKGKGYKIAEGRYEKWHGVGPFDLDTGLSKKSKSATLSPTEAYS--- 316
Query: 117 NTQLESFKKDE 127
NT LE KKDE
Sbjct: 317 NTLLELAKKDE 327
>ref|NP_223688.1| putative PARALOG OF HpaA [Helicobacter pylori J99]
Length = 249
Score = 23.9 bits (50), Expect = 2.3
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 10/118 (8%)
Query: 14 LENSFEIGSFTKENI-KEYAKCFFMSLSMFLE------EQEKNQQEEFLEQDTKENQEEL 66
++ E EN KE+ K F+ LS FLE Q K+ E + QD KE + L
Sbjct: 63 IDPKIEANKVIPENYQKEFEKSLFLQLSNFLERKGYSVSQFKDVSE--IPQDIKE-KALL 119
Query: 67 IKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQLESFK 124
+ + ++A +++ + S E K+ + L E I S + K
Sbjct: 120 VLRMDGNVAILEDIVEESDALSEEKVIDMSSGYLNLNFVEPKSEDIIHSFGIDVSKIK 177
>ref|NP_223516.1| putative [Helicobacter pylori J99]
Length = 218
Score = 23.9 bits (50), Expect = 2.3
Identities = 19/91 (20%), Positives = 41/91 (44%), Gaps = 5/91 (5%)
Query: 3 NLQELREHLKELENSFEIGSFTKEN-IKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKE 61
NL+++R K E E G+F E K Y + F+ + +++ + T+E
Sbjct: 6 NLEQVRNEFKSDEKLLE-GAFRLEKFFKRYKWVLLFIVVAFIAYLGDTKLQDYKHEQTRE 64
Query: 62 NQEELIKNIQTS---IAKNQELEKISFEKWE 89
++ + S IA + L++++ E ++
Sbjct: 65 RITQIYNEVLESPNNIALQKRLKEVAPELYD 95
>ref|NP_223089.1| putative [Helicobacter pylori J99]
Length = 313
Score = 23.9 bits (50), Expect = 2.3
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 60 KENQE--ELIKNIQTSIA-KNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESIT 113
+ENQ+ E I N++ + K +++ +K+E + ER PK+ KL +S +
Sbjct: 26 EENQQLDEKINNLKRQLTEKGVSPKEMDKDKFEEEYLERTYPKISSKKRKKLLKSFS 82
>ref|NP_223019.1| putative [Helicobacter pylori J99]
Length = 251
Score = 23.9 bits (50), Expect = 2.3
Identities = 11/30 (36%), Positives = 18/30 (59%)
Query: 133 VFEIQRKNTQIAYRLAIGGLIGIIALSSQI 162
+F + T+I Y I GL+G++ +SS I
Sbjct: 37 IFVFSKNTTEIFYFNNIIGLMGLLIISSAI 66
>ref|NP_223729.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 320
Score = 23.5 bits (49), Expect = 3.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 46 QEKNQQEEFLEQDTKENQEELIKNIQTSIAKNQELEK 82
Q K + + + KE E IK S+AKN+E K
Sbjct: 192 QNKKSEFSWYKNRHKEPFSEYIKVFTVSLAKNRECGK 228
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 23.5 bits (49), Expect = 3.0
Identities = 23/93 (24%), Positives = 42/93 (44%), Gaps = 8/93 (8%)
Query: 54 FLEQDTKENQEELIKNIQTSIAKNQELEKISFEKWENK---IQERVLPKLKRIVTHKLQE 110
FLEQD K+ +EE + + + ++ + S E + Q + K+ + + + E
Sbjct: 509 FLEQDLKQKEEEFERAKEHYVKSSKHYRETSLSPKEKQGFLKQIKQFSKISKDILYTCNE 568
Query: 111 SITSSINTQLESFKKDELDLSSVFEIQRKNTQI 143
I N L + D L+L V E K+T++
Sbjct: 569 II--GANRFLTHY--DNLNLEKVLE-HAKDTKL 596
>ref|NP_223465.1| putative [Helicobacter pylori J99]
Length = 108
Score = 23.5 bits (49), Expect = 3.0
Identities = 15/43 (34%), Positives = 25/43 (57%), Gaps = 2/43 (4%)
Query: 23 FTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQEE 65
FTK+++KE K F+ +L + + E+ Q + EQ K+ EE
Sbjct: 57 FTKQSVKEDIKNFYRALKISEKPCEEIQFSK--EQKIKQLLEE 97
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 23.5 bits (49), Expect = 3.0
Identities = 20/77 (25%), Positives = 35/77 (44%), Gaps = 4/77 (5%)
Query: 5 QELREHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQE 64
++ RE K L E+ K + + FF +L E+ + E+ + + K+N
Sbjct: 93 EDKRETRKYLYQKGEL----KLEVASQNQSFFKTLLEVAEKGNISHCEKDADTEGKQNLF 148
Query: 65 ELIKNIQTSIAKNQELE 81
E++K I I+K E E
Sbjct: 149 EVLKAILDKISKLSEEE 165
>ref|NP_223780.1| putative ATP synthase F1, subunit delta [Helicobacter pylori J99]
Length = 180
Score = 23.1 bits (48), Expect = 3.9
Identities = 13/70 (18%), Positives = 29/70 (40%)
Query: 53 EFLEQDTKENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESI 112
E LE+ T ++K + + KN L+ + E + + +V KL+ +
Sbjct: 63 EILEKITPTKACSILKPVMEVVLKNNRLDMLELVAEELSFDSKRTLEATLLVPQKLENNE 122
Query: 113 TSSINTQLES 122
+ +L++
Sbjct: 123 LEEVQQKLQA 132
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 23.1 bits (48), Expect = 3.9
Identities = 10/42 (23%), Positives = 24/42 (56%), Gaps = 5/42 (11%)
Query: 55 LEQDTKENQEELIKNIQTSIAKNQELEKISFEKWENKIQERV 96
+++D KE + I S A N E ++ FE++++++ + +
Sbjct: 70 MDKDAKE-----LVGISKSYAHNNEKDRSDFERFKSRLDKAI 106
>ref|NP_223614.1| putative [Helicobacter pylori J99]
Length = 230
Score = 23.1 bits (48), Expect = 3.9
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 29/118 (24%)
Query: 1 MSNLQELREHLKELENSFE------------------IGSFTKENIKEYAK-----CFFM 37
+ NLQ LRE +E +N+++ + +EN +E+ + +F
Sbjct: 95 LENLQTLRELKEEADNNYQESLNDEKLQNNLREWRDLKNTPEEENYREFEEIKKMVLYFR 154
Query: 38 SLSMFLEEQEKNQQEEFLEQDTKENQEELIKNIQTSIAKNQELEKISFEKWENKIQER 95
MF + K +QEE + +L+ N + + L+ +S K +I E+
Sbjct: 155 DWCMFRLDWYKLRQEEI------QKHRDLMDNDNRLLQLDYSLKNLSILKRFKEINEK 206
>ref|NP_223590.1| putative [Helicobacter pylori J99]
Length = 274
Score = 23.1 bits (48), Expect = 3.9
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 15 ENSFEIGSFTKENIKE 30
+ +FE+ +F K+NIKE
Sbjct: 12 DTTFELKNFNKQNIKE 27
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 23.1 bits (48), Expect = 3.9
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 53 EFLEQDTKENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKL 100
EFL QDT + E L++N Q L+K+ K I E+ L L
Sbjct: 2040 EFLGQDTLNSLESLLQNQQI----KSVLDKVLAAKGLGSIYEQGLGDL 2083
>ref|NP_222739.1| putative chemotaxis protein [Helicobacter pylori J99]
Length = 321
Score = 23.1 bits (48), Expect = 3.9
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 72 TSIAKNQELEKISFEKWENKIQERV-LPKLKRIVTHKLQESITSSINTQL 120
TS+ KN EL+ + F +NK V + K++ +V + +I S N L
Sbjct: 12 TSLHKNNELQLLCFRLGKNKDLYAVNVFKIREVVKYHGNLTIISHENNSL 61
>ref|NP_223915.1| putative [Helicobacter pylori J99]
Length = 123
Score = 22.7 bits (47), Expect = 5.1
Identities = 14/61 (22%), Positives = 31/61 (49%), Gaps = 2/61 (3%)
Query: 87 KWEN--KIQERVLPKLKRIVTHKLQESITSSINTQLESFKKDELDLSSVFEIQRKNTQIA 144
KW I+ ++ + K+ + + + S Q ESF++++ + F++QR+ +I
Sbjct: 37 KWRELADIRSKMFAESKKQLKERGIQLKEKSKAQQQESFEREKELMEEEFQVQRELLEIY 96
Query: 145 Y 145
Y
Sbjct: 97 Y 97
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 22.7 bits (47), Expect = 5.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 45 EQEKNQQEEFLEQDTKENQEELIK 68
+++ Q++ EQDT+EN IK
Sbjct: 391 QEQTTQEQTTQEQDTQENAPTTIK 414
>ref|NP_223460.1| putative [Helicobacter pylori J99]
Length = 206
Score = 22.7 bits (47), Expect = 5.1
Identities = 14/61 (22%), Positives = 29/61 (46%), Gaps = 9/61 (14%)
Query: 61 ENQEELIKNIQTSIAKNQELEKISFEKWENKI---------QERVLPKLKRIVTHKLQES 111
+ QE +K ++ + L + + EK++NKI + L LK+I+ L++
Sbjct: 46 KEQEAWLKKTLLAMQEKHSLLRTNLEKYKNKILVFDEMRNANDYTLTDLKKILKTYLEQK 105
Query: 112 I 112
+
Sbjct: 106 L 106
>ref|NP_223260.1| putative [Helicobacter pylori J99]
Length = 490
Score = 22.7 bits (47), Expect = 5.1
Identities = 11/24 (45%), Positives = 14/24 (57%)
Query: 67 IKNIQTSIAKNQELEKISFEKWEN 90
IKNI KN EL +S+E +N
Sbjct: 460 IKNISAGGFKNDELVLVSYENNKN 483
>ref|NP_224100.1| putative [Helicobacter pylori J99]
Length = 510
Score = 22.3 bits (46), Expect = 6.7
Identities = 11/36 (30%), Positives = 17/36 (46%)
Query: 5 QELREHLKELENSFEIGSFTKENIKEYAKCFFMSLS 40
+E +LKE ++ KEN+K + F LS
Sbjct: 427 KETLSYLKEYKSLLSSVELAKENLKLQEQAFLQGLS 462
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 22.3 bits (46), Expect = 6.7
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 11 LKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQEELIKNI 70
L +++F+ G NI +S L +Q+ + Q+T ++ EL++ I
Sbjct: 143 LSNTQSAFDQGIALSSNI--------ISAVNSLNPSNNSQEVKAQLQNTAQSMAELLQQI 194
Query: 71 QTSIAK 76
+ SI K
Sbjct: 195 EHSITK 200
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 22.3 bits (46), Expect = 6.7
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 9 EHLKELENSFEIG-SFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTK---ENQE 64
E K+LE+ F+ + + IK+ + + LE ++ + E TK EN +
Sbjct: 294 EFKKQLESYFDTSYQESTDTIKKMKEDYTNKTDEALERLDEIIKTEQNNSQTKLDTENLK 353
Query: 65 ELIKNIQTSIAKNQE 79
+I+ +++ I NQ+
Sbjct: 354 RIIETLRSKIKANQQ 368
>ref|NP_223065.1| putative [Helicobacter pylori J99]
Length = 381
Score = 22.3 bits (46), Expect = 6.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 5 QELREHLKELENSFEIGSFTKEN 27
+EL +HL + +N+ + SF N
Sbjct: 213 EELNKHLNQFDNNIQSISFNTNN 235
>ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 550
Score = 22.3 bits (46), Expect = 6.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 43 LEEQEKNQQEEFLEQDTKENQEELIKNIQTSIAKNQELEKISFEK 87
LE ++K + Q ENQ+EL+ Q++ A + +I F+K
Sbjct: 391 LEVKDKIAYGKKKPQTLDENQKELVALYQSAKALSAYWLEIEFDK 435
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 22.3 bits (46), Expect = 6.7
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 12 KELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQEELIKNI 70
K+ E + + K ++E F+ ++ FLE+ EK ++ LE+ E E L I
Sbjct: 492 KKCEEIIKYANEKKTQVEEA----FLKVAEFLEKVEKLHEKNKLEELDFEELENLSAEI 546
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 21.9 bits (45), Expect = 8.8
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 108 LQESITSSINTQLESFKKDELDLSSVF 134
+ E+++ S+ +++ F KD LDL+ +
Sbjct: 174 IDENLSLSLFDRIKDFSKDCLDLAQYY 200
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 21.9 bits (45), Expect = 8.8
Identities = 16/96 (16%), Positives = 36/96 (36%)
Query: 44 EEQEKNQQEEFLEQDTKENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKRI 103
+E E+ +E + + EN L TS+ K +K + + + + R+ + K+
Sbjct: 355 KENEREINQESANEPSSENNATLKDTENTSVLKESAAKKEAPKPSSKEEKRRLKEEKKKA 414
Query: 104 VTHKLQESITSSINTQLESFKKDELDLSSVFEIQRK 139
+ E +K+ + E+ +K
Sbjct: 415 KAEQRAREFEQRAREHQERDEKELEERRKALEMNKK 450
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 21.9 bits (45), Expect = 8.8
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 62 NQEELIKNIQTSIAKNQELEKISFEKWEN 90
+QE+L+KN + + QE++ +S + N
Sbjct: 205 SQEDLLKNTELNNETTQEVKNLSLLEQAN 233
>ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Helicobacter pylori J99]
Length = 621
Score = 21.9 bits (45), Expect = 8.8
Identities = 10/28 (35%), Positives = 14/28 (49%)
Query: 47 EKNQQEEFLEQDTKENQEELIKNIQTSI 74
EK + + FLE T E I + TS+
Sbjct: 286 EKERHQLFLEPQTIHKSEYYINGLSTSL 313
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.312 0.129 0.331
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,829
Number of Sequences: 1491
Number of extensions: 8354
Number of successful extensions: 88
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 66
length of query: 162
length of database: 494,079
effective HSP length: 71
effective length of query: 91
effective length of database: 388,218
effective search space: 35327838
effective search space used: 35327838
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)