BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645089|ref|NP_207259.1| hypothetical protein
[Helicobacter pylori 26695]
         (30 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_222993.1|  putative [Helicobacter pylori J99]               21  4.9

>ref|NP_222993.1| putative [Helicobacter pylori J99]
          Length = 172

 Score = 21.2 bits (43), Expect = 4.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 4  YSKNEVLQKRVFKQQLLLTFYKRTHK 29
          Y+ NEVLQ+R     LL +     HK
Sbjct: 40 YAYNEVLQQRRIHSLLLFSPCMLAHK 65



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.327    0.138    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,359
Number of Sequences: 1491
Number of extensions: 577
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 1
length of query: 30
length of database: 494,079
effective HSP length: 6
effective length of query: 24
effective length of database: 485,133
effective search space: 11643192
effective search space used: 11643192
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 41 (20.4 bits)