BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645090|ref|NP_207260.1| type I restriction enzyme S
protein (hsdS) [Helicobacter pylori 26695]
(365 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223133.1| TYPE I RESTRICTION ENZYME (SPECIFICITY SUB... 376 e-106
ref|NP_222908.1| putative FATTY ACID/PHOSPHOLIPID SYNTHESIS... 28 0.37
ref|NP_223520.1| putative [Helicobacter pylori J99] 26 1.4
ref|NP_223862.1| putative [Helicobacter pylori J99] 25 2.4
ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [H... 25 2.4
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 25 3.2
ref|NP_222889.1| APOLIPOPROTEIN N-ACYLTRANSFERASE [Helicoba... 25 3.2
ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter py... 25 4.1
ref|NP_223327.1| putative [Helicobacter pylori J99] 24 5.4
ref|NP_222962.1| putative [Helicobacter pylori J99] 24 5.4
ref|NP_223786.1| METHIONYL-TRNA FORMYLTRANSFERASE [Helicoba... 24 7.0
ref|NP_223454.1| MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 2... 24 7.0
ref|NP_223017.1| putative [Helicobacter pylori J99] 24 7.0
ref|NP_224134.1| putative [Helicobacter pylori J99] 23 9.2
ref|NP_223982.1| PHOSPHOGLYCERATE KINASE [Helicobacter pylo... 23 9.2
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 23 9.2
ref|NP_223311.1| UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYLTRANSFE... 23 9.2
ref|NP_223292.1| Hydrogenase, small subunit [Helicobacter p... 23 9.2
>ref|NP_223133.1| TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT) [Helicobacter
pylori J99]
Length = 409
Score = 376 bits (966), Expect = e-106
Identities = 214/410 (52%), Positives = 267/410 (64%), Gaps = 46/410 (11%)
Query: 1 MSEWQTFCLKDLGKIVGGATPPTNNPKNYGNKISWITPKDLSTLQGRYIKKGSRSISRLG 60
MSEWQTFCLKDLGKIVGGATPPTNNPKNYGNKI+WITPKDLSTLQGRYIKKGSRSISRLG
Sbjct: 1 MSEWQTFCLKDLGKIVGGATPPTNNPKNYGNKIAWITPKDLSTLQGRYIKKGSRSISRLG 60
Query: 61 FKSCSCVLLPKHAILFSSRAPIGYVAIAEKRLCTNQGFKSIIPNKKIYFEFLYYLLKYHK 120
FKSCSCVLLPKHAILFSSRAPIGYVAIAEKRLCTNQGFKSIIPNKKIYFEFLYYLLKY+K
Sbjct: 61 FKSCSCVLLPKHAILFSSRAPIGYVAIAEKRLCTNQGFKSIIPNKKIYFEFLYYLLKYYK 120
Query: 121 NNFINMGEGTTIKGIYNIALGLFKVKIPPTYYEQQKIARTLSILDQKIENNHKINELLHT 180
+N N+G GTT K + LGLF+VKIPPTYYEQQKIA TLSILDQKIENNHKINELLH
Sbjct: 121 DNISNIGGGTTFKEVSGATLGLFQVKIPPTYYEQQKIAHTLSILDQKIENNHKINELLHK 180
Query: 181 LAYKIYEYY---FKYKPKNAKLEQI----IIENPKSNIMVKNAQKTQDKYPFFT------ 227
+ +YE Y F + +N K Q + + + N ++ N K + T
Sbjct: 181 ILELLYEQYFVRFDFLDENNKPYQTSGGKMKFSKELNRLIPNDFKVKTLGELITWISGSQ 240
Query: 228 -----------------------SGDNILSYPKAIIDGRNCF-----LNTGGNAG-IKFY 258
S +N ++Y + + C+ ++ G AG ++F
Sbjct: 241 PPKSCHIYEYKEGYIRFIQNRDYSSNNYVTYIPISKNNKICYQYDIMMDKYGEAGSVRFG 300
Query: 259 V-GKASYSTDTWCICANEFSDYL--YLLLSSIKNHINQSFFQGTSLKHLQKNLLKKYPIY 315
+ G + + + +Y+ YL IK +++ + T L +N + +
Sbjct: 301 LQGAYNVALSKISVLNQSMQEYIRSYLNSKPIKKYLSNACMASTRAS-LNENHIYSLMLP 359
Query: 316 MPSVHEIKKFNQIMMPLLTLISINTRTSKKLEQIRDFLLPLLLKQQVKPQ 365
+P ++ ++K+ +I ++T I N ++++ L +RDFLLPLLLKQQVKPQ
Sbjct: 360 IPPINLLQKYEKIAKNIITAIIKNNQSTQTLTALRDFLLPLLLKQQVKPQ 409
>ref|NP_222908.1| putative FATTY ACID/PHOSPHOLIPID SYNTHESIS PROTEIN [Helicobacter
pylori J99]
Length = 339
Score = 28.1 bits (61), Expect = 0.37
Identities = 40/155 (25%), Positives = 55/155 (34%), Gaps = 9/155 (5%)
Query: 115 LLKYHKNNFINMGEGTTIKGIYNIALGLFK-VKIPPTYYEQQKIARTLSILDQKIENNHK 173
+LK + I+ G G+ + LG K V+ P + + S+L N
Sbjct: 85 ILKNGADALISAGHSGATMGLATLRLGRIKGVERPAICTLMPSVGKRPSVLLDAGANTDC 144
Query: 174 INELLHTLAYKIYEY---YFKYKPKNAKLEQIIIENPKSNIMVKNAQKTQDKYPFFTSGD 230
E L A YEY Y L E+ K N +VK K Y FF
Sbjct: 145 KPEYLIDFALMGYEYAKSVLHYDSPKVGLLSNGEEDIKGNTLVKETHKMLKAYDFFYGNV 204
Query: 231 NILSYPKAIIDGRNC--FLNTGGNAGIKFYVGKAS 263
K ++D C F+ GN +K G AS
Sbjct: 205 EGSDIFKGVVDVVVCDGFM---GNVVLKTTEGVAS 236
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 26.2 bits (56), Expect = 1.4
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 272 CANEFSDYLYLLLSSI-------KNHINQSFFQGTSLKHLQKNLLKKYPIY 315
C F++ LYL S+ KNH+++ F+ + LK ++L K+ +Y
Sbjct: 94 CKRLFNEGLYLQYRSVLRENRLLKNHLSKKDFENSLLKIELRDLHKEIKLY 144
>ref|NP_223862.1| putative [Helicobacter pylori J99]
Length = 112
Score = 25.4 bits (54), Expect = 2.4
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 319 VHEIKKFNQIMMPLLTLISINTRTSKKLEQIRDFL 353
V E+ ++ ++ +P TLIS+N + E++ DFL
Sbjct: 22 VRELDEYEELHLPNATLISVNDQ-----EKLADFL 51
>ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 764
Score = 25.4 bits (54), Expect = 2.4
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 173 KINELLHTLAYKIYEYYFKYKPKNAKLEQIIIENPKSNIMVKNAQKTQDKYPFFTSGDNI 232
KI +L L +K+ KP+ + ++I+ N + +I K Q ++ F DN+
Sbjct: 399 KIQNILKNLGFKVSTKEPNSKPQ---ILEVIVPNFRHDI--KTIQDIAEEILRFVGIDNL 453
Query: 233 LSYPKAIIDGRN 244
+S P + +N
Sbjct: 454 VSKPLHCVSSKN 465
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 25.0 bits (53), Expect = 3.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 189 YFKYKPKNAKLEQIIIENPKSNIMVKNAQKTQDKYPFFTSGDNILSY 235
Y + KN + + N + I +KN Q T+D TS +N +Y
Sbjct: 391 YTLFSMKNGNIAYDDVNNLWNIIRLKNTQATKDNSKNATSNNNTHTY 437
>ref|NP_222889.1| APOLIPOPROTEIN N-ACYLTRANSFERASE [Helicobacter pylori J99]
Length = 425
Score = 25.0 bits (53), Expect = 3.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 246 FLNTGGNAG--IKFYVGKASYSTDTWCICANEFSDYLYLL 283
FL T N+ + F+VG + WC + +SD+ YLL
Sbjct: 53 FLKTPRNSAFALGFFVGALLFY---WCALSFRYSDFTYLL 89
>ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter pylori J99]
Length = 445
Score = 24.6 bits (52), Expect = 4.1
Identities = 11/29 (37%), Positives = 16/29 (54%)
Query: 193 KPKNAKLEQIIIENPKSNIMVKNAQKTQD 221
K KNA Q ++ SN+ +K K+QD
Sbjct: 272 KSKNALSSQAVVATSMSNLALKEYLKSQD 300
>ref|NP_223327.1| putative [Helicobacter pylori J99]
Length = 171
Score = 24.3 bits (51), Expect = 5.4
Identities = 17/63 (26%), Positives = 30/63 (46%), Gaps = 4/63 (6%)
Query: 283 LLSSIKNHINQSFFQGTS----LKHLQKNLLKKYPIYMPSVHEIKKFNQIMMPLLTLISI 338
L+ S+ N++F + S L L+K KK Y S E K + + +++L++
Sbjct: 17 LIHSLTTQKNRAFLKKISANEMLLELEKGAFKKNEAYFISDEEDKNYVLVPDNVISLLAE 76
Query: 339 NTR 341
N R
Sbjct: 77 NAR 79
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 24.3 bits (51), Expect = 5.4
Identities = 19/74 (25%), Positives = 35/74 (46%), Gaps = 2/74 (2%)
Query: 152 YEQQKIARTLSILDQKIENNHKINELLHTLAYKIYEYYFKYKPKNAK-LEQIIIENPKSN 210
Y + K +++ IL+ + + + L+ ++ + K PK A L ++ + PK N
Sbjct: 127 YSKMKDSKSALILEN-LPTQNALEILMALKPQELGKILAKMDPKKAAALTELWQKPPKEN 185
Query: 211 IMVKNAQKTQDKYP 224
K +QKT D P
Sbjct: 186 KENKESQKTTDPTP 199
>ref|NP_223786.1| METHIONYL-TRNA FORMYLTRANSFERASE [Helicobacter pylori J99]
Length = 305
Score = 23.9 bits (50), Expect = 7.0
Identities = 10/24 (41%), Positives = 15/24 (61%)
Query: 287 IKNHINQSFFQGTSLKHLQKNLLK 310
++NH+N FQ SLK + +LK
Sbjct: 56 LENHLNIPIFQPQSLKEPEVQILK 79
>ref|NP_223454.1| MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 2 [Helicobacter pylori
J99]
Length = 145
Score = 23.9 bits (50), Expect = 7.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 182 AYKIYEYYFKYKPKNAKL 199
A K+YEY+FK +NA +
Sbjct: 101 ALKLYEYFFKNFKRNAPI 118
>ref|NP_223017.1| putative [Helicobacter pylori J99]
Length = 321
Score = 23.9 bits (50), Expect = 7.0
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 258 YVGKASYSTDTWCICANEFSDYLYLLLSSIKNHINQSFFQGTSLKHL 304
Y G+ + C+C N+ D L+ S+K +N ++G LK +
Sbjct: 54 YCGEKMLYLNAGCVCCNKRLD----LVESLKATLNNYEWRGEILKRV 96
>ref|NP_224134.1| putative [Helicobacter pylori J99]
Length = 479
Score = 23.5 bits (49), Expect = 9.2
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 146 KIPPTYYEQQKIARTLSILDQKIENNHKINELLHTLAYKIYEYYFKYKPKNAKLEQIIIE 205
++ PT+YE ++A + + + N +NE ++YE ++ L II E
Sbjct: 374 QVEPTFYETSELAYSSTRKSEITRNELNLNEKFMEFV-EVYEGHY--------LNDIIKE 424
Query: 206 NPKSNIMVKN 215
+ + VKN
Sbjct: 425 SSEYKEWVKN 434
>ref|NP_223982.1| PHOSPHOGLYCERATE KINASE [Helicobacter pylori J99]
Length = 402
Score = 23.5 bits (49), Expect = 9.2
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 216 AQKTQDKYPF--FTSGDNILSYPKAIIDGRNCFLNTGGNAGIKFYVGK 261
A K + Y F GD I + +A F++TGG A ++ GK
Sbjct: 343 AHKIANTYAFSLIGGGDTIDAINRAGEKDNMSFISTGGGASLELLEGK 390
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 23.5 bits (49), Expect = 9.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 258 YVGKASYSTDTWCICANEFSDYLYLLLSSIKNHINQSFF 296
++ K + W + N S+ L LLS I N + QS F
Sbjct: 421 FLNKLIAKEEPWVLHKNNESEKLEALLSLIANTLLQSSF 459
>ref|NP_223311.1| UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYLTRANSFERASE [Helicobacter pylori
J99]
Length = 422
Score = 23.5 bits (49), Expect = 9.2
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 132 IKGIYNIALGLFKVKIPPTYYEQQKIARTLSILDQKIENNHKINELLHTLAYKIYEYYF 190
I+G+ + AL L ++I P E +I + +++ NH I + + K+ E F
Sbjct: 217 IRGVESDALNLKDIQIIPDRIEAGTCLCVGAITNSQLKINHIIPNHIQAITDKLIEIGF 275
>ref|NP_223292.1| Hydrogenase, small subunit [Helicobacter pylori J99]
Length = 384
Score = 23.5 bits (49), Expect = 9.2
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 21/83 (25%)
Query: 73 AILFSSRAPIGYVAIAEKRLCTNQGFKSIIPN-KKIYFEF-------------------- 111
A+ ++R P+ ++ +AE C+ +S P I F++
Sbjct: 69 AVEVANRLPVIWLHMAECTGCSESLLRSADPTIDSIIFDYINLEYHETIMVASGFQAEKS 128
Query: 112 LYYLLKYHKNNFINMGEGTTIKG 134
L+ ++ HKNN+I M EG +G
Sbjct: 129 LHDAIEKHKNNYILMVEGGIPQG 151
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.138 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,814
Number of Sequences: 1491
Number of extensions: 21301
Number of successful extensions: 63
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 20
length of query: 365
length of database: 494,079
effective HSP length: 79
effective length of query: 286
effective length of database: 376,290
effective search space: 107618940
effective search space used: 107618940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)