BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645095|ref|NP_207265.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(115 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223137.1| putative [Helicobacter pylori J99] 226 1e-61
ref|NP_223219.1| putative [Helicobacter pylori J99] 30 0.023
ref|NP_223788.1| putative [Helicobacter pylori J99] 28 0.066
ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE ... 27 0.11
ref|NP_222910.1| putative [Helicobacter pylori J99] 27 0.11
ref|NP_223830.1| putative [Helicobacter pylori J99] 27 0.19
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 27 0.19
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 26 0.33
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 25 0.42
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 25 0.55
ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylor... 25 0.55
ref|NP_223659.1| putative [Helicobacter pylori J99] 25 0.55
ref|NP_223515.1| putative [Helicobacter pylori J99] 25 0.55
ref|NP_223176.1| putative [Helicobacter pylori J99] 25 0.55
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 25 0.72
ref|NP_222962.1| putative [Helicobacter pylori J99] 25 0.72
ref|NP_223873.1| putative [Helicobacter pylori J99] 24 0.95
ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 24 0.95
ref|NP_223180.1| putative [Helicobacter pylori J99] 24 0.95
ref|NP_222868.1| putative lipopolysaccharide biosynthesis p... 24 0.95
ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobact... 24 0.95
ref|NP_223773.1| putative [Helicobacter pylori J99] 24 1.2
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 24 1.2
ref|NP_223139.1| putative [Helicobacter pylori J99] 24 1.2
ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Hel... 24 1.2
ref|NP_222831.1| putative [Helicobacter pylori J99] 24 1.2
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 23 1.6
ref|NP_223787.1| putative [Helicobacter pylori J99] 23 1.6
ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99] 23 1.6
ref|NP_223639.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_223025.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter ... 23 2.8
ref|NP_223807.1| putative component of cation transport for... 23 2.8
ref|NP_223546.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_222934.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 22 3.6
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 22 3.6
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 22 3.6
ref|NP_222783.1| putative [Helicobacter pylori J99] 22 3.6
ref|NP_223985.1| 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFE... 22 4.7
ref|NP_223457.1| putative [Helicobacter pylori J99] 22 4.7
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 22 6.1
ref|NP_224134.1| putative [Helicobacter pylori J99] 22 6.1
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 22 6.1
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 21 8.0
ref|NP_224061.1| putative Inner membrane protein [Helicobac... 21 8.0
ref|NP_223889.1| putative [Helicobacter pylori J99] 21 8.0
ref|NP_223116.1| FERRIC UPTAKE REGULATION PROTEIN [Helicoba... 21 8.0
ref|NP_222839.1| putative [Helicobacter pylori J99] 21 8.0
>ref|NP_223137.1| putative [Helicobacter pylori J99]
Length = 115
Score = 226 bits (576), Expect = 1e-61
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MRIIIRLLSFKMNAFLKLALASLMGGLWYAFNGEGSEIVAIGIFVLILFVFFIRPVSFQD 60
MRIIIRLLSFKMNAFLKLALASLMGGLWYAFNGEGSEIVAIGIFVLILFVFFIRPVSFQD
Sbjct: 1 MRIIIRLLSFKMNAFLKLALASLMGGLWYAFNGEGSEIVAIGIFVLILFVFFIRPVSFQD 60
Query: 61 PEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKKYS 115
PEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKKYS
Sbjct: 61 PEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKKYS 115
>ref|NP_223219.1| putative [Helicobacter pylori J99]
Length = 321
Score = 29.6 bits (65), Expect = 0.023
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 38 IVAIGIFVLILFVFFIR-PVSFQDPEKREEYIERLKKNHERKMI--LQDKQKEEQMRLYQ 94
++ +G+ V+IL V I+ S ++ ++E I+ KN+ ++K+ E +L +
Sbjct: 154 VIVLGVVVIILVVVIIQNSSSLKEEREQERAIKPDTKNNSFNETNPTEEKKLEPTPKLEE 213
Query: 95 AKKERESRQKQDLKE 109
KE++ + K+ +KE
Sbjct: 214 KHKEQDKQGKEAIKE 228
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 28.1 bits (61), Expect = 0.066
Identities = 13/45 (28%), Positives = 25/45 (54%)
Query: 62 EKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQD 106
EKR +Y K +++ L+++ KE+Q + +A K+ + QD
Sbjct: 49 EKRAQYQSYFKNLEQKEEALKERAKEQQAQFDEAVKQASALALQD 93
Score = 25.0 bits (53), Expect = 0.55
Identities = 15/49 (30%), Positives = 29/49 (58%), Gaps = 1/49 (2%)
Query: 62 EKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQ 110
EK E E+++K K L+ KQ+EEQ+ + + + + +++K +L Q
Sbjct: 162 EKLELEREKIEKALHEKNELKFKQQEEQLEMLR-NELKNAQRKAELSSQ 209
Score = 22.7 bits (47), Expect = 2.8
Identities = 13/58 (22%), Positives = 29/58 (49%)
Query: 56 VSFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKK 113
+ F+ E++ E + KN +RK L +Q + +++ ++ + D E++KK
Sbjct: 181 LKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAIEEFLRQKFPLDSVEEIKK 238
>ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99]
Length = 688
Score = 27.3 bits (59), Expect = 0.11
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 62 EKREEYIERLKKNHERKMILQDKQKEEQMRLYQAK 96
E+ E +E++KK R+MI+QDK + ++ L + +
Sbjct: 290 EEIELSLEKVKKTEIRRMIIQDKIRPDKRALEEVR 324
>ref|NP_222910.1| putative [Helicobacter pylori J99]
Length = 100
Score = 27.3 bits (59), Expect = 0.11
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 52 FIRPVSF--QDPEKREEYIER--------LKKNHERKMILQDKQKEEQMRLYQAKKE 98
F+ V + QDP+KR+ +E+ LK N K +D K QM L QA+KE
Sbjct: 43 FVHSVKYYLQDPQKRDHKLEKCHKAFDSTLKVNFITKSFKKD-CKHAQMALEQAQKE 98
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 26.6 bits (57), Expect = 0.19
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 60 DPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQ 110
+ EK++ E+ K E++ Q+KQK EQ + + E ++ K + ++Q
Sbjct: 132 EQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQ 182
Score = 26.2 bits (56), Expect = 0.25
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 60 DPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQ 110
+ EK++ E+ K E++ Q+KQK + K + +QK + ++Q
Sbjct: 139 EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQ 189
Score = 26.2 bits (56), Expect = 0.25
Identities = 14/47 (29%), Positives = 26/47 (54%), Gaps = 6/47 (12%)
Query: 69 ERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKKYS 115
E K E++ Q+KQK EQ +K++ ++KQ +++ +K S
Sbjct: 127 EEQKTEQEKQKTEQEKQKTEQ------EKQKTEQEKQKTEQEKQKTS 167
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 26.6 bits (57), Expect = 0.19
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 56 VSFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLK 108
V DP++ EE + L+K E K Q QK+++ + +KE ++ + +L+
Sbjct: 133 VDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKR----EKRKEERAKNRANLE 181
Score = 21.2 bits (43), Expect = 8.0
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 66 EYIERLKKNHERKMILQ---DKQKEEQMRLYQAKKERESRQKQDLKEQMKK 113
+Y E LK +K+I+ K+ EEQ + + +KE + + ++ K++ +K
Sbjct: 121 DYQEFLKT---KKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREK 168
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 25.8 bits (55), Expect = 0.33
Identities = 12/57 (21%), Positives = 30/57 (52%)
Query: 54 RPVSFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQ 110
+P+ PE + + KK + + L+ +K E+ ++ + KKE + +Q ++++
Sbjct: 108 KPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVVEQKVEQK 164
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 25.4 bits (54), Expect = 0.42
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 62 EKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKE 109
EK ++ E+L RK++ Q+ +K + L + R ++KQ+ ++
Sbjct: 1031 EKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEK 1078
Score = 25.4 bits (54), Expect = 0.42
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 62 EKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKE 109
EK ++ E+L RK++ Q+ +K + L + R ++KQ+ ++
Sbjct: 1215 EKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEK 1262
Score = 23.5 bits (49), Expect = 1.6
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 62 EKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDL 107
E+R+E ++ L K+ + ++ ++ K + QAK E E ++ + L
Sbjct: 552 EERKECLKNLPKDLQSDILAKESLKAYKDCASQAKTEAEKKECEKL 597
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 25.0 bits (53), Expect = 0.55
Identities = 22/111 (19%), Positives = 50/111 (44%), Gaps = 19/111 (17%)
Query: 19 ALASLMGGLWYAFNGEGSEIVAIGIFVLILFVFFIRPVSFQDP--------------EKR 64
ALA+L + + G+E + +G+ + +L + S +D E+R
Sbjct: 405 ALANLCRSSFCITHEVGAEEILLGMLLKMLNIESTALKSLEDSKQSIVDEAALKALEEER 464
Query: 65 EEYIERLKKN-----HERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQ 110
++ +E+ ++ ++ + + + KEE A KE ++ K ++KE+
Sbjct: 465 KKALEQAEQGCSIGENKEEAVASKENKEENKTEAAAPKENQTENKTEVKEE 515
>ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 847
Score = 25.0 bits (53), Expect = 0.55
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 65 EEYIERLKKNHERKMILQDKQKEEQMRL 92
+E I+RLK HE+ + + K++ E++ L
Sbjct: 760 KEMIDRLKSKHEKLLAIVFKKENERITL 787
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 25.0 bits (53), Expect = 0.55
Identities = 15/63 (23%), Positives = 30/63 (46%), Gaps = 4/63 (6%)
Query: 56 VSFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKER----ESRQKQDLKEQM 111
+ QD EK E+ +E++K + + + QKE L K + ++ LK+++
Sbjct: 239 LQLQDLEKEEKALEQIKSPQDEWDLNKALQKEYLQELKDKNKAKALDIQNNHSTPLKQKI 298
Query: 112 KKY 114
K+
Sbjct: 299 SKF 301
Score = 22.3 bits (46), Expect = 3.6
Identities = 18/53 (33%), Positives = 30/53 (55%), Gaps = 8/53 (15%)
Query: 65 EEYI----ERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKK 113
EEY+ +LK+ K+ LQD +KEE+ L Q K ++ + DL + ++K
Sbjct: 221 EEYLYVNEPKLKELDNIKLQLQDLEKEEK-ALEQIKSPQD---EWDLNKALQK 269
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 25.0 bits (53), Expect = 0.55
Identities = 15/62 (24%), Positives = 36/62 (57%), Gaps = 6/62 (9%)
Query: 55 PVSFQDPEKREEYIERLKKNHERKMILQDKQK---EEQMRLY-QAKKERESRQKQDLKEQ 110
P+S ++ K+E + E++ + ++K+K E++ R + Q +E + R +++L+E+
Sbjct: 475 PISKENAAKKE--APKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEER 532
Query: 111 MK 112
K
Sbjct: 533 RK 534
Score = 23.9 bits (50), Expect = 1.2
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 61 PEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKK 113
P +EE ++ + K + ++ E++ R +Q + E+E +++ E KK
Sbjct: 489 PSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALEMNKK 541
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 25.0 bits (53), Expect = 0.55
Identities = 15/48 (31%), Positives = 25/48 (51%)
Query: 63 KREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQ 110
K E LK++ +K + KEE+ RL + KK+ ++ Q+ EQ
Sbjct: 378 KDTENTSVLKESAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQ 425
Score = 23.9 bits (50), Expect = 1.2
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 61 PEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKK 113
P +EE ++ + K + ++ E++ R +Q + E+E +++ E KK
Sbjct: 398 PSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALEMNKK 450
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 24.6 bits (52), Expect = 0.72
Identities = 8/42 (19%), Positives = 26/42 (61%)
Query: 72 KKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKK 113
++ E+K++ + +++E ++ Y+ K ++ + L+ ++KK
Sbjct: 299 EEEREKKLLAEKEKQETELAKYKLKDLENQKKLKALEAELKK 340
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 24.6 bits (52), Expect = 0.72
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 72 KKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKK 113
KK ++ + Q +KE+ +R+ Q + R +K DL + +K
Sbjct: 33 KKAELKEDLRQLSEKEQSLRILQTENARLLDEKSDLLNKKEK 74
Score = 22.7 bits (47), Expect = 2.8
Identities = 16/52 (30%), Positives = 26/52 (49%), Gaps = 5/52 (9%)
Query: 62 EKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKE-----RESRQKQDLK 108
+K +E E+LK ++ + Q EE+ RL +E RE +Q +D K
Sbjct: 71 KKEKEIDEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKDSK 122
>ref|NP_223873.1| putative [Helicobacter pylori J99]
Length = 298
Score = 24.3 bits (51), Expect = 0.95
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 6 RLLSFKMNAFLKLALASLMGGL 27
RL S+K F KLA ++GGL
Sbjct: 60 RLKSYKQGGFKKLAFRVVVGGL 81
>ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 528
Score = 24.3 bits (51), Expect = 0.95
Identities = 14/54 (25%), Positives = 27/54 (49%), Gaps = 4/54 (7%)
Query: 65 EEYIERLKKN----HERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKKY 114
+E+++ KKN H R+ ILQ + + ++ + A E Q+ D + +Y
Sbjct: 433 KEFLKEGKKNKLKAHNREKILQTYIERKAIKHFSALANIEKIQENDYNLSVNRY 486
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 24.3 bits (51), Expect = 0.95
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 61 PEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERE 100
P E +E K E+K + K+KEE Y+ KKE++
Sbjct: 546 PILEAETLEEYKPKKEKKEKKEKKEKEE----YKLKKEKK 581
Score = 21.9 bits (45), Expect = 4.7
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 88 EQMRLYQAKKERESRQKQDLKEQMK 112
E + Y+ KKE++ ++++ KE+ K
Sbjct: 551 ETLEEYKPKKEKKEKKEKKEKEEYK 575
>ref|NP_222868.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 377
Score = 24.3 bits (51), Expect = 0.95
Identities = 11/32 (34%), Positives = 18/32 (55%)
Query: 82 QDKQKEEQMRLYQAKKERESRQKQDLKEQMKK 113
+D + ++ +Q ++ERE RQK L E K
Sbjct: 169 KDFSSPKSLKHFQTEREREPRQKFSLYEHYLK 200
>ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobacter pylori J99]
Length = 352
Score = 24.3 bits (51), Expect = 0.95
Identities = 17/46 (36%), Positives = 24/46 (51%), Gaps = 5/46 (10%)
Query: 65 EEYIERLKKNHERKMILQDKQ-----KEEQMRLYQAKKERESRQKQ 105
+EY+ L+ E K +L+DK+ KEE L K E E+ KQ
Sbjct: 52 KEYLSVLEGIKENKELLEDKELSELAKEELKILEIQKSELETAIKQ 97
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 23.9 bits (50), Expect = 1.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 59 QDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKK 113
Q+ ++R +RLK+N E Q+ K Q L Q ++ ES + + L Q+ K
Sbjct: 117 QEEQRRLREQQRLKQNQEN----QEMLKGLQQNLNQFTQKLESVKNKTLDLQIPK 167
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 23.9 bits (50), Expect = 1.2
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 56 VSFQDPEKREEYIER---LKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQM 111
VS+Q K + R +K E+ ++ KEE ++L+++ K+ ++ +DLK +
Sbjct: 192 VSYQIQAKINDSANREVTIKHCDEKGEEIKFNDKEEALKLFESLKDNKACLLKDLKNSV 250
>ref|NP_223139.1| putative [Helicobacter pylori J99]
Length = 162
Score = 23.9 bits (50), Expect = 1.2
Identities = 12/27 (44%), Positives = 16/27 (58%)
Query: 85 QKEEQMRLYQAKKERESRQKQDLKEQM 111
QKEE + K ERES++ D KE +
Sbjct: 120 QKEEPIAQEPKKDERESKEWLDSKEAL 146
>ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Helicobacter pylori J99]
Length = 363
Score = 23.9 bits (50), Expect = 1.2
Identities = 13/51 (25%), Positives = 22/51 (42%)
Query: 61 PEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQM 111
PEK ++ +ER++K E QD K + + R Q +K +
Sbjct: 26 PEKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKMKNSL 76
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 23.9 bits (50), Expect = 1.2
Identities = 12/49 (24%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
Query: 60 DPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLK 108
+ EK+E +K ER+ Q++QK + + + ++ER+ K ++
Sbjct: 130 EQEKKEANKSGIKLEQERQKTEQERQKTNKSEI-ELEQERQKTNKSGIE 177
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 23.5 bits (49), Expect = 1.6
Identities = 15/53 (28%), Positives = 24/53 (44%)
Query: 61 PEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKK 113
PEK +EY E +N + K+K ++ + K+R QD+ M K
Sbjct: 442 PEKLDEYFELKTQNLNEAAKTELKKKWVNLQKVFSTKDRLEHIVQDIVLDMAK 494
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 23.5 bits (49), Expect = 1.6
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 50 VFFIRPVSFQDPEKREEYIERLKKNHERKM--------ILQDKQKEEQMRLYQAKKERES 101
+F + + ++ EK E E + K +E+K+ + Q K+KEE+ K
Sbjct: 109 IFTLGKKTNENLEKIESKKESINKENEKKIKNEASLQVLTQKKEKEEKDFTDSCWKNLYK 168
Query: 102 RQKQDLKEQMKKY 114
+ +++ KE ++ +
Sbjct: 169 KNEEEFKEILEGF 181
>ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99]
Length = 144
Score = 23.5 bits (49), Expect = 1.6
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 62 EKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMK 112
++RE E ++K E + +++ E + ++A ++ +KQ LKEQ++
Sbjct: 74 KRREMLAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQILKEQLQ 124
>ref|NP_223639.1| putative [Helicobacter pylori J99]
Length = 328
Score = 23.1 bits (48), Expect = 2.1
Identities = 12/50 (24%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 64 REEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKK 113
+E+Y + +K H + + +++ EEQ++ +AK+++++++++ L +KK
Sbjct: 20 KEKYGDDWEK-HVKAKAINEEELEEQVKA-KAKEQQKTQREKTLNGFLKK 67
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 23.1 bits (48), Expect = 2.1
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 64 REEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQD 106
+EE E +KK ++M Q++ KE+Q + + E + K D
Sbjct: 174 KEEAQEEVKKEEVKEM--QEEVKEKQKQEVAENPQDEEKPKDD 214
>ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter pylori J99]
Length = 533
Score = 22.7 bits (47), Expect = 2.8
Identities = 15/55 (27%), Positives = 27/55 (48%), Gaps = 9/55 (16%)
Query: 59 QDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKK 113
+D E+ E ++ER K + KE+ + L KK + + +LK++ KK
Sbjct: 440 EDLEEIEGFLERFDKAN---------LKEKSLMLESLKKSKNTAIALELKKKEKK 485
>ref|NP_223807.1| putative component of cation transport for cbb3-type oxidase
[Helicobacter pylori J99]
Length = 63
Score = 22.7 bits (47), Expect = 2.8
Identities = 12/49 (24%), Positives = 27/49 (54%)
Query: 39 VAIGIFVLILFVFFIRPVSFQDPEKREEYIERLKKNHERKMILQDKQKE 87
V +G+ LI F++ ++ F D ++ E + + + ILQ+K+++
Sbjct: 14 VLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASDLNEAILQEKRQK 62
>ref|NP_223546.1| putative [Helicobacter pylori J99]
Length = 68
Score = 22.7 bits (47), Expect = 2.8
Identities = 11/45 (24%), Positives = 24/45 (52%)
Query: 69 ERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKK 113
++L K + + ++ + KE + + QAKK+ K +++KK
Sbjct: 20 KQLAKYQSKVLEIKTQMKEIKKQYSQAKKDENLANKYIPNDELKK 64
>ref|NP_222934.1| putative [Helicobacter pylori J99]
Length = 385
Score = 22.7 bits (47), Expect = 2.8
Identities = 8/35 (22%), Positives = 18/35 (50%)
Query: 1 MRIIIRLLSFKMNAFLKLALASLMGGLWYAFNGEG 35
M +++ ++ + N + + + L+ LW F G G
Sbjct: 351 MLLVVAVVLYTHNLAIGVVVGVLINALWIKFKGMG 385
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 22.3 bits (46), Expect = 3.6
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 62 EKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKER-ESRQKQDLKEQMKK 113
+ +EY + + +K + DKQ++E + Y K E + K++ +++KK
Sbjct: 221 QTNKEYFLKEQLKQIQKELGTDKQRDEDLNQYYQKLESIKPFLKEEAFKEIKK 273
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 22.3 bits (46), Expect = 3.6
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 76 ERKMILQDKQKEEQMRLYQAKKERESRQKQDL 107
E + +L +Q+ ++ R Q K+E +++ KQ++
Sbjct: 199 EIERLLNKRQEADKERRAQKKQEDQAKPKQEV 230
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 22.3 bits (46), Expect = 3.6
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 53 IRPVSFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERE 100
++ + QD E IE+++K + + I + ++ EE + KKE+E
Sbjct: 494 LQDMVLQDTEPLFSKIEKIEKIEKIEKIEKIEKGEEALAEKAEKKEKE 541
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 22.3 bits (46), Expect = 3.6
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 49 FVFFIRPVSFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKK 97
F F+ + + ++ I+R N E + + D K +MRL+ KK
Sbjct: 563 FKSFLTKIHAEFNQRNLAPIDRKIYNGETPLKMPDTLKANEMRLHLGKK 611
>ref|NP_223985.1| 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE [Helicobacter
pylori J99]
Length = 237
Score = 21.9 bits (45), Expect = 4.7
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 38 IVAIGIFVLILFVFFIR 54
++AIG+ V+I+F +F R
Sbjct: 18 VIAIGLAVIIVFNYFNR 34
>ref|NP_223457.1| putative [Helicobacter pylori J99]
Length = 279
Score = 21.9 bits (45), Expect = 4.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 1 MRIIIRLLSFKMNAFLKLAL 20
MR+II+ + + FLK+ L
Sbjct: 1 MRVIIKFMLISLKTFLKILL 20
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 21.6 bits (44), Expect = 6.1
Identities = 12/45 (26%), Positives = 23/45 (50%)
Query: 65 EEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKE 109
E RL+K + L+DK++ ++ + E+ ++ DLKE
Sbjct: 161 ETKFTRLEKLERERRSLEDKKRFQKDLEERLNFEKMKLERLDLKE 205
>ref|NP_224134.1| putative [Helicobacter pylori J99]
Length = 479
Score = 21.6 bits (44), Expect = 6.1
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 80 ILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKK 113
ILQ + E+ + +A+K+ +RQ ++E +K+
Sbjct: 316 ILQARSSTEKCKRARARKDGTTRQCYLIEEPLKQ 349
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 21.6 bits (44), Expect = 6.1
Identities = 11/47 (23%), Positives = 24/47 (50%)
Query: 63 KREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKE 109
K+E E ++N ++ ++K + + + K +ES+ K+ KE
Sbjct: 15 KQEAKTEATQENKAKESNKENKNNKAKEGKIKEAKTKESKVKETAKE 61
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 21.2 bits (43), Expect = 8.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 62 EKREEYIERLKKNHE 76
EK E+Y ERL+K E
Sbjct: 340 EKHEQYKERLEKEIE 354
>ref|NP_224061.1| putative Inner membrane protein [Helicobacter pylori J99]
Length = 549
Score = 21.2 bits (43), Expect = 8.0
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 44 FVLILFVFFIRPVSFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRL 92
+ +IL +R + + K +++LK+ + LQ+K K E +L
Sbjct: 357 WAIILLTIIVRIILYPLSYKGMVSMQKLKELAPKMKELQEKYKGEPQKL 405
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 21.2 bits (43), Expect = 8.0
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 84 KQKEEQMRLYQAKKERESRQKQDLKEQMKK 113
KQ+ +Q + K+E + KQ++K+++K+
Sbjct: 91 KQEIKQEIKQEIKQEIKQEIKQEIKQEIKQ 120
>ref|NP_223116.1| FERRIC UPTAKE REGULATION PROTEIN [Helicobacter pylori J99]
Length = 150
Score = 21.2 bits (43), Expect = 8.0
Identities = 9/27 (33%), Positives = 16/27 (58%)
Query: 62 EKREEYIERLKKNHERKMILQDKQKEE 88
E E +ERL+ + ++ + KQ+EE
Sbjct: 5 ETLESILERLRMSIKKNGLKNSKQREE 31
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 21.2 bits (43), Expect = 8.0
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 87 EEQMRLYQAKKERESRQKQDLKEQMKK 113
E RL K+E + K D K+ M K
Sbjct: 50 EVNKRLEAMKEEERQKYKADFKKAMDK 76
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.324 0.140 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,790
Number of Sequences: 1491
Number of extensions: 5475
Number of successful extensions: 98
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 74
length of query: 115
length of database: 494,079
effective HSP length: 67
effective length of query: 48
effective length of database: 394,182
effective search space: 18920736
effective search space used: 18920736
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 43 (21.2 bits)