BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645097|ref|NP_207267.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(162 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223139.1| putative [Helicobacter pylori J99] 304 9e-85
ref|NP_223618.1| putative [Helicobacter pylori J99] 30 0.042
ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Hel... 29 0.072
ref|NP_223090.1| putative [Helicobacter pylori J99] 27 0.27
ref|NP_223025.1| putative [Helicobacter pylori J99] 27 0.27
ref|NP_223999.1| putative [Helicobacter pylori J99] 24 1.8
ref|NP_224003.1| putative [Helicobacter pylori J99] 23 3.9
ref|NP_223788.1| putative [Helicobacter pylori J99] 23 3.9
ref|NP_223137.1| putative [Helicobacter pylori J99] 23 3.9
ref|NP_222725.1| 3-deoxy-D-manno-octulosonic acid 8-phospha... 23 3.9
ref|NP_223830.1| putative [Helicobacter pylori J99] 23 5.1
ref|NP_223490.1| putative [Helicobacter pylori J99] 23 5.1
ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III ... 22 8.8
ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99] 22 8.8
ref|NP_222781.1| putative [Helicobacter pylori J99] 22 8.8
>ref|NP_223139.1| putative [Helicobacter pylori J99]
Length = 162
Score = 304 bits (778), Expect = 9e-85
Identities = 151/162 (93%), Positives = 157/162 (96%)
Query: 1 MQRELRLLNNKHCMEYLQFLSKNHLSFNLLCERDAIDFSPKLPKEIHEKFGALVLFVLAG 60
MQRELRLLNNKHC+EYLQFLSKNHLSFNLLCERDAIDFSPKLPKEIHEKFG+LVLF+LAG
Sbjct: 1 MQRELRLLNNKHCIEYLQFLSKNHLSFNLLCERDAIDFSPKLPKEIHEKFGSLVLFILAG 60
Query: 61 YTLESLIIDTKSVQFEAGFGPNNIGSVVQVKLPGIIQILIKEKNENAVLFNRCDSLELFQ 120
YTLESL+ID +SVQFEAGFGPNNIGSVVQV L GIIQILIKEKNEN VLFNRCDSLELFQ
Sbjct: 61 YTLESLMIDAQSVQFEAGFGPNNIGSVVQVGLSGIIQILIKEKNENIVLFNRCDSLELFQ 120
Query: 121 KEDSIAQEPKKDERESKEWLDSKEALFSNSKNRAILENLHKS 162
KE+ IAQEPKKDERESKEWLDSKEALFSNSKNRAILENLHKS
Sbjct: 121 KEEPIAQEPKKDERESKEWLDSKEALFSNSKNRAILENLHKS 162
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 29.6 bits (65), Expect = 0.042
Identities = 21/61 (34%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 88 VQVKLPGIIQILIKEKNENAV--LFNRCDSLELFQKEDSIAQEPKKDERESKEWLDSKEA 145
VQ KL ++ L E EN++ L +RC+ LE+ K+ IA K+ E+ + D K+
Sbjct: 263 VQYKLKKVLPGLFNECLENSLKGLKDRCE-LEITHKKQEIALAQKEKEKHLNDLEDQKQI 321
Query: 146 L 146
L
Sbjct: 322 L 322
>ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Helicobacter pylori J99]
Length = 363
Score = 28.9 bits (63), Expect = 0.072
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 109 LFNRCDSLELFQKEDSIAQEPKKDERESKE---WLDSKEALFSNSK 151
L N+CD++ L K + I QE ++ E+E ++ W D +A +N +
Sbjct: 13 LQNKCDNIALIIKPEKIKQELERIEKEQEDPNFWQDVLKARDTNKE 58
>ref|NP_223090.1| putative [Helicobacter pylori J99]
Length = 440
Score = 26.9 bits (58), Expect = 0.27
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 49 KFGALVLFVLAGYTL-ESLIIDTKSVQF-----EAGFGPNNIGSVVQVKLPGIIQILI-K 101
K ALV+ +L GY + + I +++ F E NN +K P ++I+ K
Sbjct: 6 KILALVVLILGGYLIFNAFITKPRALSFSLKSEENALNDNNEALFWDLKKPIKVKIVAPK 65
Query: 102 EKNENAVLFNRCDSLELFQKEDSIAQEPKKDE 133
+ D+L L++KE + +PK E
Sbjct: 66 GIKRYEIKVTTKDNLILYEKESLVLDKPKSLE 97
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 26.9 bits (58), Expect = 0.27
Identities = 18/47 (38%), Positives = 25/47 (52%), Gaps = 1/47 (2%)
Query: 100 IKEKNENAVLFNRCDSLELFQKEDSIAQEPKKDERESKEWLDSKEAL 146
+KEK + V N D + E + EP KDE SKE L+++E L
Sbjct: 193 VKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKE-LETQEEL 238
>ref|NP_223999.1| putative [Helicobacter pylori J99]
Length = 464
Score = 24.3 bits (51), Expect = 1.8
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 132 DERESKEWLDSKEALFSNSK---NRAILEN 158
D+R +EWL S++ L N+ RA+L+N
Sbjct: 12 DKRVLEEWLLSEDILMENAAMALERAVLQN 41
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 23.1 bits (48), Expect = 3.9
Identities = 11/29 (37%), Positives = 17/29 (57%)
Query: 133 ERESKEWLDSKEALFSNSKNRAILENLHK 161
+ ESKE L + + + N +N IL+ HK
Sbjct: 222 DEESKENLLNYKDCWDNGENYVILDEAHK 250
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 23.1 bits (48), Expect = 3.9
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 101 KEKNENAVLFNRCDSLELFQKEDSIAQEPKKDERESKEWLDSKEALFSNSKNRAILENLH 160
KE NE + L QKE+++ + K+ + + E + AL + I+E
Sbjct: 45 KEVNEKRAQYQSYFK-NLEQKEEALKERAKEQQAQFDEAVKQASALALQDERAKIIEEAR 103
Query: 161 KS 162
K+
Sbjct: 104 KN 105
>ref|NP_223137.1| putative [Helicobacter pylori J99]
Length = 115
Score = 23.1 bits (48), Expect = 3.9
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 120 QKEDSIAQEPKKDERESKEWLDSKEAL 146
QKE+ + K ERES++ D KE +
Sbjct: 85 QKEEQMRLYQAKKERESRQKQDLKEQM 111
>ref|NP_222725.1| 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase [Helicobacter
pylori J99]
Length = 276
Score = 23.1 bits (48), Expect = 3.9
Identities = 17/78 (21%), Positives = 36/78 (45%), Gaps = 1/78 (1%)
Query: 18 QFLSKNHLSFNLLCERDAIDFSPKLPK-EIHEKFGALVLFVLAGYTLESLIIDTKSVQFE 76
QF++ + +++L D S + P E K G + + + +L++D +S++
Sbjct: 133 QFMNPKDMQYSVLKALKTRDSSIQSPTYETALKNGVWLCERGSSFGYGNLVVDMRSLKIM 192
Query: 77 AGFGPNNIGSVVQVKLPG 94
F P + V++PG
Sbjct: 193 REFAPVIFDATHSVQMPG 210
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 22.7 bits (47), Expect = 5.1
Identities = 13/44 (29%), Positives = 23/44 (51%)
Query: 101 KEKNENAVLFNRCDSLELFQKEDSIAQEPKKDERESKEWLDSKE 144
+++ ENA +EL Q+E QE +K E+E ++ K+
Sbjct: 107 QKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQ 150
>ref|NP_223490.1| putative [Helicobacter pylori J99]
Length = 296
Score = 22.7 bits (47), Expect = 5.1
Identities = 15/43 (34%), Positives = 21/43 (47%), Gaps = 1/43 (2%)
Query: 108 VLFNRCDSLELFQKEDSIAQEPKKDERESKEWLDSKEALFSNS 150
V F C S E F K AQE + D + ++DS +FS +
Sbjct: 15 VCFLAC-SQESFIKMQKKAQEQENDGSKRPSYVDSDYEVFSET 56
>ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE [Helicobacter
pylori J99]
Length = 457
Score = 21.9 bits (45), Expect = 8.8
Identities = 14/68 (20%), Positives = 34/68 (49%), Gaps = 7/68 (10%)
Query: 17 LQFLSKNHLSFNLLCERDAIDFSPKLPKEIHE----KFGALVLFVLAGYTLE---SLIID 69
+Q +S L ++ + E+ +IDF KE+ + + L+ F G+ + +++
Sbjct: 377 MQMMSNLKLDYSKIEEKFSIDFKAHFKKELEKLKPYEEAGLLSFNSKGFEMTRTGGMLVR 436
Query: 70 TKSVQFEA 77
+++F+A
Sbjct: 437 NMAMEFDA 444
>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 21.9 bits (45), Expect = 8.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 136 SKEWLDSKEALFSNSKNRA 154
+KE L++ E LF+N +N A
Sbjct: 179 NKERLNANEPLFANPRNAA 197
>ref|NP_222781.1| putative [Helicobacter pylori J99]
Length = 139
Score = 21.9 bits (45), Expect = 8.8
Identities = 7/13 (53%), Positives = 11/13 (83%)
Query: 137 KEWLDSKEALFSN 149
KEWL+ +E +F+N
Sbjct: 84 KEWLEPEEIVFAN 96
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.136 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,434
Number of Sequences: 1491
Number of extensions: 8256
Number of successful extensions: 31
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 15
length of query: 162
length of database: 494,079
effective HSP length: 71
effective length of query: 91
effective length of database: 388,218
effective search space: 35327838
effective search space used: 35327838
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)