BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645100|ref|NP_207270.1| outer membrane protein
(omp11) [Helicobacter pylori 26695]
(186 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223142.1| putative Outer membrane protein [Helicobac... 394 e-111
ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobac... 118 1e-28
ref|NP_223332.1| putative Outer membrane protein [Helicobac... 86 6e-19
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 83 4e-18
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 83 5e-18
ref|NP_223377.1| putative Outer membrane protein [Helicobac... 83 5e-18
ref|NP_222743.1| putative Outer membrane protein [Helicobac... 79 6e-17
ref|NP_223820.1| putative Outer membrane function [Helicoba... 73 5e-15
ref|NP_223882.1| outer membrane protein - adhesin [Helicoba... 70 5e-14
ref|NP_223551.1| outer membrane protein - adhesin [Helicoba... 70 5e-14
ref|NP_222959.1| putative Outer membrane protein [Helicobac... 70 5e-14
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 67 4e-13
ref|NP_223363.1| Outer membrane protein/porin [Helicobacter... 65 9e-13
ref|NP_223027.1| putative Outer membrane protein [Helicobac... 65 1e-12
ref|NP_223567.1| Outer membrane protein/porin [Helicobacter... 63 4e-12
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 62 7e-12
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 62 7e-12
ref|NP_224112.1| putative Outer membrane protein [Helicobac... 62 9e-12
ref|NP_224080.1| putative Outer membrane protein [Helicobac... 62 9e-12
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 62 1e-11
ref|NP_222958.1| putative Outer membrane protein [Helicobac... 61 2e-11
ref|NP_224132.1| putative [Helicobacter pylori J99] 60 5e-11
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 59 6e-11
ref|NP_223566.1| Outer membrane protein/porin [Helicobacter... 55 1e-09
ref|NP_223078.1| putative Outer membrane protein [Helicobac... 46 5e-07
ref|NP_223757.1| putative Outer membrane protein [Helicobac... 42 8e-06
ref|NP_223725.1| putative outer membrane protein [Helicobac... 42 1e-05
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 40 3e-05
ref|NP_222795.1| putative Outer membrane protein [Helicobac... 40 4e-05
ref|NP_223588.1| putative outer membrane protein [Helicobac... 39 9e-05
ref|NP_223367.1| putative Outer membrane protein [Helicobac... 39 9e-05
ref|NP_222838.1| putative Outer membrane protein [Helicobac... 37 3e-04
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 36 6e-04
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 36 6e-04
ref|NP_223299.1| putative Outer membrane protein [Helicobac... 30 0.030
ref|NP_223088.1| putative [Helicobacter pylori J99] 30 0.030
ref|NP_223381.1| putative Outer membrane protein [Helicobac... 28 0.12
ref|NP_223089.1| putative [Helicobacter pylori J99] 28 0.12
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 25 0.98
ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori... 24 2.8
ref|NP_223260.1| putative [Helicobacter pylori J99] 24 2.8
ref|NP_223623.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_222856.1| Cytochrome oxidase (CBB3-TYPE) [Helicobact... 23 4.8
>ref|NP_223142.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 186
Score = 394 bits (1011), Expect = e-111
Identities = 185/186 (99%), Positives = 185/186 (99%)
Query: 1 MIKRIACILSLSTSLALAGEVNGFFMGAGYQQGRYGPYNSNYSDWRHGNDLYGLNFKLGF 60
MIKRIACILSLS SLALAGEVNGFFMGAGYQQGRYGPYNSNYSDWRHGNDLYGLNFKLGF
Sbjct: 1 MIKRIACILSLSASLALAGEVNGFFMGAGYQQGRYGPYNSNYSDWRHGNDLYGLNFKLGF 60
Query: 61 VGFANKWFGARVYGFLDWFNTSGTEHTKTNLLTYGGGGDLIVNLIPLDKFALGLIGGVQL 120
VGFANKWFGARVYGFLDWFNTSGTEHTKTNLLTYGGGGDLIVNLIPLDKFALGLIGGVQL
Sbjct: 61 VGFANKWFGARVYGFLDWFNTSGTEHTKTNLLTYGGGGDLIVNLIPLDKFALGLIGGVQL 120
Query: 121 AGNTWMFPYDVNQTRFQFLWNLGGRMRVGDRSAFEAGVKFPMVNQGSKDVGLIRYYSWYV 180
AGNTWMFPYDVNQTRFQFLWNLGGRMRVGDRSAFEAGVKFPMVNQGSKDVGLIRYYSWYV
Sbjct: 121 AGNTWMFPYDVNQTRFQFLWNLGGRMRVGDRSAFEAGVKFPMVNQGSKDVGLIRYYSWYV 180
Query: 181 DYVFTF 186
DYVFTF
Sbjct: 181 DYVFTF 186
>ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 242
Score = 118 bits (295), Expect = 1e-28
Identities = 79/235 (33%), Positives = 113/235 (47%), Gaps = 55/235 (23%)
Query: 5 IACILSLSTSLALAGEVNGFFMGAGYQQGRYGPYNSNYSDWRHGN-DLYGLNFKLGFVGF 63
+A I+S++ + G NG F+GAGY QG+ + S + N + G + LG+ F
Sbjct: 10 LALIISMNAVSGMDG--NGVFLGAGYLQGQAQMHADINSQKQATNATIKGFDALLGYQFF 67
Query: 64 ANKWFGARVYGFLDWF---------------------------------NTSGTEHTKTN 90
K FG R+YGF D+ N + + N
Sbjct: 68 FEKHFGLRLYGFFDYAHANSIKLKNPNYNSEAAQVASQILGKQEINRLTNIADPRTFEPN 127
Query: 91 LLTYGGGGDLIVNLIPLDKFALGLIGGVQLAGNTWMFP-------------YDVNQTRFQ 137
+LTYGG D++VN+I +LG GG+QLAGN+W+ T FQ
Sbjct: 128 MLTYGGAMDVMVNVINNGIMSLGAFGGIQLAGNSWLMATPSFEGILVEQALVSKKATSFQ 187
Query: 138 FLWNLGGRMRVGDRSAFEAGVKFPMVNQG------SKDVGLIRYYSWYVDYVFTF 186
FL+N+G R+R+ S+ EAGVKFPM+ + + D+G R YSWYV+YVFTF
Sbjct: 188 FLFNVGARLRILKHSSIEAGVKFPMLKKNPYITAKNLDIGFRRVYSWYVNYVFTF 242
>ref|NP_223332.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 270
Score = 85.9 bits (211), Expect = 6e-19
Identities = 67/230 (29%), Positives = 97/230 (42%), Gaps = 59/230 (25%)
Query: 16 ALAGEVNGFFMGAGYQQGRYG------PYNS--NYSDWRHGNDLY-----GLNFKLGFVG 62
A+ GE N +++G YQ G+ P +S NY + G Y GL +G+
Sbjct: 41 AVKGEKNAWYLGISYQVGQASQSVKNPPKSSEFNYPKFPVGKTDYLAVMQGLGLTVGYKQ 100
Query: 63 F--ANKWFGARVYGFLDWFNT------------------------SGTEHTKTNLLTYGG 96
F +WFGAR YGF+D+ + GT +++ TYG
Sbjct: 101 FFGEKRWFGARYYGFMDYGHAVFGANALTSDNGGVCKLNEPCATKVGTMGNLSDMFTYGV 160
Query: 97 GGDLIVNLIPLDKFALGLIGGVQLAGNTW---------------MFPYDVNQTRFQFLWN 141
G D + N+I + + G G Q+AGN+W Y ++ FQFL+N
Sbjct: 161 GIDTLYNVINKEDASFGFFFGAQIAGNSWGNTTGAFLETKSPYKHTSYSLDPAIFQFLFN 220
Query: 142 LGGRMRVGDRSAFEAGVKFPMV-----NQGSKDVGLIRYYSWYVDYVFTF 186
LG R +G F+ GVK P + N G+ R YS YV Y + F
Sbjct: 221 LGIRTHIGQHQEFDFGVKIPTINVYYFNHGNLSFTYRRQYSLYVGYRYNF 270
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 83.2 bits (204), Expect = 4e-18
Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 31/163 (19%)
Query: 53 GLNFKLGFVGF--ANKWFGARVYGFLDW---FNTSGTEHTKTNLLTYGGGGDLIVNLIPL 107
G+ +LG+ F NK+FG R YGF D+ + S ++ +N+ TYG G DL++N I
Sbjct: 323 GVGVQLGYKQFFGKNKFFGIRYYGFFDYNYAYIKSNFFNSASNVFTYGAGSDLLLNFING 382
Query: 108 D-----KFALGLIGGVQLAGNTWM-------------FPYDVNQTRFQFLWNLGGRMRVG 149
K + G+ GG+ LAG TW+ + +N T FQFL+N G R++ G
Sbjct: 383 GSDRNRKVSFGIFGGIALAGTTWLNNQSANLKITNSAYSAKINNTNFQFLFNTGLRLQ-G 441
Query: 150 DRSAFEAGVKFPMVN------QGSKDVGLIRYYSWYVDYVFTF 186
E GVK P +N G+K + R YS Y++YV +
Sbjct: 442 IHHGIELGVKIPTINTNYYSFMGAK-LAYRRLYSLYLNYVLAY 483
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 82.8 bits (203), Expect = 5e-18
Identities = 65/185 (35%), Positives = 94/185 (50%), Gaps = 43/185 (23%)
Query: 43 SDWRHGNDLYGLNFKLG---FVGFANKWFGARVYGFLDW---FNTSGTEHTKTNLLTYGG 96
S + L GL ++G F G + +W G R YGF D+ + S ++ +++ TYGG
Sbjct: 469 SSQNNNGALNGLGVQVGYKQFFGESKRW-GLRYYGFFDYNHGYIKSSFFNSSSDIWTYGG 527
Query: 97 GGDLIVNLI------PLDKFALGLIGGVQLAGNTWM-----------FPYD--VNQTRFQ 137
G DL+VN I +K ++GL GG+QLAG TW+ PY VN + FQ
Sbjct: 528 GSDLLVNFINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYMNLTAFNNPYSAKVNASNFQ 587
Query: 138 FLWNLGGRMRV-------GDRSA---FEAGVKFPMVNQ------GSKDVGLIRYYSWYVD 181
FL+NLG R + +RSA E G+K P +N G+K + R YS Y++
Sbjct: 588 FLFNLGLRTNLATAKKKDSERSAQHGVELGIKIPTINTNYYSFLGTK-LEYRRLYSVYLN 646
Query: 182 YVFTF 186
YVF +
Sbjct: 647 YVFAY 651
Score = 33.5 bits (75), Expect = 0.004
Identities = 21/48 (43%), Positives = 27/48 (55%), Gaps = 3/48 (6%)
Query: 8 ILSLSTSLA---LAGEVNGFFMGAGYQQGRYGPYNSNYSDWRHGNDLY 52
+LSLS SLA L E NGFF+ AGYQ G N + ++ N+ Y
Sbjct: 6 LLSLSLSLASSLLHAEDNGFFVSAGYQIGEAVQMVKNTGELKNLNEKY 53
>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 638
Score = 82.8 bits (203), Expect = 5e-18
Identities = 65/185 (35%), Positives = 94/185 (50%), Gaps = 43/185 (23%)
Query: 43 SDWRHGNDLYGLNFKLG---FVGFANKWFGARVYGFLDW---FNTSGTEHTKTNLLTYGG 96
S + L GL ++G F G + +W G R YGF D+ + S ++ +++ TYGG
Sbjct: 456 SSQNNNGALNGLGVQVGYKQFFGESKRW-GLRYYGFFDYNHGYIKSSFFNSSSDIWTYGG 514
Query: 97 GGDLIVNLI------PLDKFALGLIGGVQLAGNTWM-----------FPYD--VNQTRFQ 137
G DL+VN I +K ++GL GG+QLAG TW+ PY VN + FQ
Sbjct: 515 GSDLLVNFINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYMNLTAFNNPYSAKVNASNFQ 574
Query: 138 FLWNLGGRMRV-------GDRSA---FEAGVKFPMVNQ------GSKDVGLIRYYSWYVD 181
FL+NLG R + +RSA E G+K P +N G+K + R YS Y++
Sbjct: 575 FLFNLGLRTNLATAKKKDSERSAQHGVELGIKIPTINTNYYSFLGTK-LEYRRLYSVYLN 633
Query: 182 YVFTF 186
YVF +
Sbjct: 634 YVFAY 638
Score = 35.0 bits (79), Expect = 0.001
Identities = 22/48 (45%), Positives = 27/48 (55%), Gaps = 3/48 (6%)
Query: 8 ILSLSTSLA---LAGEVNGFFMGAGYQQGRYGPYNSNYSDWRHGNDLY 52
+LSLS SLA L E NGFF+ AGYQ G N + ++ ND Y
Sbjct: 6 LLSLSLSLASSLLHAEDNGFFVSAGYQIGEAVQMVKNTGELKNLNDKY 53
>ref|NP_222743.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 690
Score = 79.3 bits (194), Expect = 6e-17
Identities = 57/172 (33%), Positives = 84/172 (48%), Gaps = 38/172 (22%)
Query: 53 GLNFKLGFVGF--ANKWFGARVYGFLDW---FNTSGTEHTKTNLLTYGGGGDLIVNLI-- 105
G+ F++G+ F NK +GAR YGF+D+ +N S + +++ TYG G DL+VN I
Sbjct: 519 GIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNASSDVWTYGVGSDLLVNFIND 578
Query: 106 ---PLDKFALGLIGGVQLAGNTWM-------------FPYDVNQTRFQFLWNLGGRM--- 146
+K + G GG+ LAG +W+ + +N FQFL+NLG RM
Sbjct: 579 KATKHNKISFGAFGGIALAGTSWLNSQYVNLANVNNYYKAKINTANFQFLFNLGLRMNLA 638
Query: 147 ----RVGDRSA---FEAGVKFPMVNQG-----SKDVGLIRYYSWYVDYVFTF 186
R D +A E G K P +N + R YS Y++YVF +
Sbjct: 639 RKKHRATDNAAQHGIELGTKIPTINTNYYSLLGTTLQYRRLYSVYLNYVFAY 690
Score = 28.5 bits (62), Expect = 0.12
Identities = 15/37 (40%), Positives = 19/37 (50%)
Query: 16 ALAGEVNGFFMGAGYQQGRYGPYNSNYSDWRHGNDLY 52
AL+ E NGFF+ AGYQ G N + +D Y
Sbjct: 17 ALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSY 53
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 72.8 bits (177), Expect = 5e-15
Identities = 60/178 (33%), Positives = 85/178 (47%), Gaps = 46/178 (25%)
Query: 53 GLNFKLG---FVGFANKWFGARVYGFLDWFNT---SGTEHTKTNLLTYGGGGDLIVNLI- 105
GL + G F G +W G R YGF D+ +T S ++ +++LTYG G DL+ N I
Sbjct: 468 GLGVQAGYKQFFGQKRRW-GLRYYGFFDYNHTYIKSSFFNSSSDVLTYGVGSDLLFNFIN 526
Query: 106 --------PLDKFALGLIGGVQLAGNTWM-------------FPYDVNQTRFQFLWNLGG 144
+K ++GL GG+ LAG +W+ + VN FQFL+NLG
Sbjct: 527 DKNTNFLGKNNKISVGLFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLGL 586
Query: 145 RMRV-------GDRSA---FEAGVKFPMVNQ------GSKDVGLIRYYSWYVDYVFTF 186
R + D SA E GVK P +N G+K + R YS Y++YVF +
Sbjct: 587 RTNLARPKKKDSDHSAQHGMELGVKIPTINTNYYSYLGTK-LEYRRLYSVYLNYVFAY 643
Score = 25.4 bits (54), Expect = 0.98
Identities = 15/31 (48%), Positives = 18/31 (57%), Gaps = 1/31 (3%)
Query: 3 KRIACILSLSTSLALAGEVNGFFMGAGYQQG 33
K I L+L+ SL L E NG F+ GYQ G
Sbjct: 6 KTILLSLTLAASL-LHAEDNGVFLSVGYQIG 35
>ref|NP_223882.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 703
Score = 69.7 bits (169), Expect = 5e-14
Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 44/177 (24%)
Query: 53 GLNFKLG---FVGFANKWFGARVYGFLDW---FNTSGTEHTKTNLLTYGGGGDLIVNLI- 105
G+ ++G F G KW GAR YGF D+ F S ++ +++ TYG G D + N I
Sbjct: 528 GIGIQVGYKQFFGQKRKW-GARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFIN 586
Query: 106 --------PLDKFALGLIGGVQLAGNTWM-------------FPYDVNQTRFQFLWNLGG 144
+K ++GL GG+ LAG +W+ + +N FQFL+N+G
Sbjct: 587 DKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLATMNNVYNAKMNVANFQFLFNMGV 646
Query: 145 RMRV-------GDRSA---FEAGVKFPMVNQG-----SKDVGLIRYYSWYVDYVFTF 186
RM + D +A E G+K P +N ++ R YS Y++YVF +
Sbjct: 647 RMNLARPKKKDSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 703
Score = 25.0 bits (53), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 8 ILSLSTSLALAGEVNGFFMGAGYQQG 33
+LSLS S L E +GF+ AG + G
Sbjct: 6 LLSLSLSFGLHAEDDGFYASAGIRIG 31
>ref|NP_223551.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 744
Score = 69.7 bits (169), Expect = 5e-14
Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 44/177 (24%)
Query: 53 GLNFKLG---FVGFANKWFGARVYGFLDW---FNTSGTEHTKTNLLTYGGGGDLIVNLI- 105
G+ ++G F G KW GAR YGF D+ F S ++ +++ TYG G D + N I
Sbjct: 569 GIGIQVGYKQFFGQKRKW-GARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFIN 627
Query: 106 --------PLDKFALGLIGGVQLAGNTWM-------------FPYDVNQTRFQFLWNLGG 144
+K ++GL GG+ LAG +W+ + +N FQFL+N+G
Sbjct: 628 DKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLATMNNVYNAKMNVANFQFLFNMGV 687
Query: 145 RMRV-------GDRSA---FEAGVKFPMVNQG-----SKDVGLIRYYSWYVDYVFTF 186
RM + D +A E G+K P +N ++ R YS Y++YVF +
Sbjct: 688 RMNLARPKKKDSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 744
>ref|NP_222959.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 69.7 bits (169), Expect = 5e-14
Identities = 57/190 (30%), Positives = 84/190 (44%), Gaps = 42/190 (22%)
Query: 34 RYGPYNSNYSDWRHGNDLYGLNFKLGFVGF--ANKWFGARVYGFLDW-FNTSGTEHT--K 88
++GP S+ +HG + G ++G+ F + K G R Y F D+ F G+ ++ K
Sbjct: 287 QFGPGTSS----QHGV-INGFGIQVGYKQFFGSKKNIGLRYYAFFDYGFTQLGSLNSAVK 341
Query: 89 TNLLTYGGGGDLIVNLIPL----DKFALGLIGGVQLAGNTW----------MFPYDVNQT 134
N+ TYG G D + N+ +G+ GG+Q+AGNTW F T
Sbjct: 342 ANIFTYGAGTDFLWNIFRRVFSDQSLNVGVFGGIQIAGNTWDSSLRGQIENSFKEYPTPT 401
Query: 135 RFQFLWNLGGRMRVGD-------------RSAFEAGVKFPMVNQ-----GSKDVGLIRYY 176
FQFL+NLG R + E GVK P +NQ DV R Y
Sbjct: 402 NFQFLFNLGLRAHFASTMHRRFLSASQSIQHGMEFGVKIPAINQRYLKANGADVDYRRLY 461
Query: 177 SWYVDYVFTF 186
++Y++Y F
Sbjct: 462 AFYINYTIGF 471
Score = 30.4 bits (67), Expect = 0.030
Identities = 16/30 (53%), Positives = 21/30 (69%), Gaps = 1/30 (3%)
Query: 4 RIACILSLSTSLALAGEVNGFFMGAGYQQG 33
+ A + SL S+ALA E +GF+MG GYQ G
Sbjct: 30 KTALLFSLPLSVALA-EDDGFYMGVGYQIG 58
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 66.6 bits (161), Expect = 4e-13
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 40/173 (23%)
Query: 53 GLNFKLG---FVGFANKWFGARVYGFLDW---FNTSGTEHTKTNLLTYGGGGDLIVNLI- 105
G+ ++G F G +W G R YGF D+ + S ++ +++ TYG G D++ N I
Sbjct: 497 GIGVQVGYKQFFGEKRRW-GLRYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVLYNFIN 555
Query: 106 ----PLDKFALGLIGGVQLAGNTWM-------------FPYDVNQTRFQFLWNLGGRM-- 146
K + G+ GG+ LAG +W+ + +N FQFL+NLG RM
Sbjct: 556 DKTTKNSKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAKMNVANFQFLFNLGLRMNL 615
Query: 147 -----RVGDRSA---FEAGVKFPMVNQG-----SKDVGLIRYYSWYVDYVFTF 186
+ D +A E GVK P +N + R YS Y++YVF +
Sbjct: 616 AKNKKKASDHAAQHGVELGVKIPTINTNYYSLLGTQLQYRRLYSVYLNYVFAY 668
Score = 35.4 bits (80), Expect = 0.001
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 8 ILSLSTSLALAGEVNGFFMGAGYQQGRYGPYNSNYSDWRHGNDLY 52
+LSLS S L E NGFF+ AGYQ G N + + +D Y
Sbjct: 6 LLSLSASSLLNAEDNGFFISAGYQIGEAAQMVKNTGELKKLSDTY 50
>ref|NP_223363.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 270
Score = 65.5 bits (158), Expect = 9e-13
Identities = 57/233 (24%), Positives = 96/233 (40%), Gaps = 57/233 (24%)
Query: 11 LSTSLALAGEVNGFFMGA--GYQQGRYGPYNSN---YSDWRHGN-DLYGLN------FKL 58
L++++ G+ G +G G ++ P +N +S + +G + +GLN F+
Sbjct: 38 LNSNIYNTGDCTGSVVGCPPGLTANKHNPGGTNINWHSKYANGALNGFGLNVGYKKFFQF 97
Query: 59 GFVGFANKWFGARVYGFLDWFNTS------GTEHTKTNLLTYGGGGDLIVNLIPLDKFAL 112
+ +KWFG RVYG D+ + + +++++G G DL+ ++I D +
Sbjct: 98 KSLDMTSKWFGFRVYGLFDYGHADLGKQVYAPNKIQLDMVSWGVGSDLLADIIDKDNASF 157
Query: 113 GLIGGVQLAGNTWMF----------------------------PYDVNQTR--FQFLWNL 142
G+ GGV + GNTW PY N + FQ N
Sbjct: 158 GIFGGVAIGGNTWKSSAANYWKEQIIEAKGPDVCTPTYCNPNAPYSTNTSTVAFQVWLNF 217
Query: 143 GGRMRVGDRSAFEAGVKFPMVNQGSKDVG---------LIRYYSWYVDYVFTF 186
G R + + E GV+ P++ G L R YS Y+ Y +TF
Sbjct: 218 GVRANIYKHNGVEFGVRVPLLINKFLSAGPNATNLYYHLKRDYSLYLGYNYTF 270
>ref|NP_223027.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 245
Score = 64.7 bits (156), Expect = 1e-12
Identities = 49/164 (29%), Positives = 73/164 (43%), Gaps = 31/164 (18%)
Query: 53 GLNFKLGFVGF--ANKWFGARVYGFLDWFNTSGTEHTK-----TNLLTYGGGGDLIVNLI 105
G+ +G+ F +K G R + FLDW G + K N++TYG G D I N
Sbjct: 83 GIGLVMGYNHFFHPDKVLGLRYFAFLDW-QGYGMRYPKGYYGGNNMITYGVGVDAIWNFF 141
Query: 106 PLDKFA------LGLIGGVQLAGNTWMFPYD------------VNQTRFQFLWNLGGRMR 147
+ +G+ GG+ +AGN+W V+ T FQFL+N G +
Sbjct: 142 QGSFYQDDIGVDIGVFGGIAIAGNSWYIGNKGQELLGITNSSAVDNTSFQFLFNFGFKAL 201
Query: 148 VGDRSAFEAGVKFPMVNQ-----GSKDVGLIRYYSWYVDYVFTF 186
D FE G KFP +N + V + R +++YV Y + F
Sbjct: 202 FVDEHEFEIGFKFPTLNNKYYTTDALKVQMRRVFAFYVGYNYHF 245
>ref|NP_223567.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 527
Score = 63.2 bits (152), Expect = 4e-12
Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 31/169 (18%)
Query: 49 NDLYGLNFKLGFVGF--ANKWFGARVYGFLDWFNT---SGTEHTKTNLLTYGGGGDLIVN 103
N G K+G+ F NK G R YGF + +G + + NLLTYG G D++ N
Sbjct: 359 NAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYN 418
Query: 104 LIPLD----KFALGLIGGVQLAGNTWM--------FPYDVNQTRFQFLWNLGGRMRVG-- 149
+ G GG+QLAG+T++ T+FQFL+++G RM G
Sbjct: 419 VFSRSFGSRSLNAGFFGGIQLAGDTYISTLRNSPQLASRPTATKFQFLFDVGLRMNFGIL 478
Query: 150 -------DRSAFEAGVKFPMV-----NQGSKDVGLIRYYSWYVDYVFTF 186
++ + E GV+ P + G +V R YS Y Y + F
Sbjct: 479 KKDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRPYSVYWVYGYAF 527
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 62.4 bits (150), Expect = 7e-12
Identities = 52/167 (31%), Positives = 75/167 (44%), Gaps = 41/167 (24%)
Query: 60 FVGFANKWFGARVYGFLDW---FNTSGTEHTKTNLLTYGGGGDLIVNLI---------PL 107
F G W G R YGF D+ + S ++ +++ TYG G D + N I
Sbjct: 531 FFGKKRNW-GLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLGKN 589
Query: 108 DKFALGLIGGVQLAGNTWMFPYDVNQT-------------RFQFLWNLGGRMRV------ 148
+K ++GL GG LAG +W+ VN T FQFL++LG RM +
Sbjct: 590 NKLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSASNFQFLFDLGLRMNLARPKKK 649
Query: 149 -GDRSA---FEAGVKFPMVNQG-----SKDVGLIRYYSWYVDYVFTF 186
D +A E GVK P +N ++ R YS Y++YVF +
Sbjct: 650 DSDHAAQHGMELGVKIPTINTDYYSFMGAELKYRRLYSVYLNYVFAY 696
Score = 24.6 bits (52), Expect = 1.7
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 2 IKRIACILSLSTSLALA-GEVNGFFMGAGYQQG 33
IK+ LS S +L+ E +GF+M GYQ G
Sbjct: 3 IKKSLFALSFSLMASLSRAEDDGFYMSVGYQIG 35
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 62.4 bits (150), Expect = 7e-12
Identities = 52/167 (31%), Positives = 75/167 (44%), Gaps = 41/167 (24%)
Query: 60 FVGFANKWFGARVYGFLDW---FNTSGTEHTKTNLLTYGGGGDLIVNLI---------PL 107
F G W G R YGF D+ + S ++ +++ TYG G D + N I
Sbjct: 531 FFGKKRNW-GLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLGKN 589
Query: 108 DKFALGLIGGVQLAGNTWMFPYDVNQT-------------RFQFLWNLGGRMRV------ 148
+K ++GL GG LAG +W+ VN T FQFL++LG RM +
Sbjct: 590 NKLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSASNFQFLFDLGLRMNLARPKKK 649
Query: 149 -GDRSA---FEAGVKFPMVNQG-----SKDVGLIRYYSWYVDYVFTF 186
D +A E GVK P +N ++ R YS Y++YVF +
Sbjct: 650 DSDHAAQHGMELGVKIPTINTDYYSFMGAELKYRRLYSVYLNYVFAY 696
Score = 24.6 bits (52), Expect = 1.7
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 2 IKRIACILSLSTSLALA-GEVNGFFMGAGYQQG 33
IK+ LS S +L+ E +GF+M GYQ G
Sbjct: 3 IKKSLFALSFSLMASLSRAEDDGFYMSVGYQIG 35
>ref|NP_224112.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 388
Score = 62.0 bits (149), Expect = 9e-12
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 51 LYGLNFKLGFVGFANK--WFGARVYGFLDWFNTSGTEHT-------------KTNLLTYG 95
+YGL G+ F K WFG R YGF D+ +T+ + K ++ TYG
Sbjct: 153 MYGLGVMTGYKHFVGKKRWFGLRYYGFFDYGHTNFSNSRAANAISPFYLSDQKADMYTYG 212
Query: 96 GGGDLIVNLIPLDKFALGLIGGVQLAGNTWM----------FPYDVNQTRFQFLWNLGGR 145
G D++ N+I K G GV AGNTW + Y VN ++ N G
Sbjct: 213 FGTDMLFNVIDKPKATAGFFVGVNFAGNTWTNNRVGYFKDGYVYGVNTDADAYMTNADGT 272
Query: 146 MRVGDRSAFEAGV 158
+ GD + V
Sbjct: 273 ITCGDTTPASCNV 285
>ref|NP_224080.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 248
Score = 62.0 bits (149), Expect = 9e-12
Identities = 57/217 (26%), Positives = 82/217 (37%), Gaps = 56/217 (25%)
Query: 1 MIKRIACILSLSTSLALAGEVNGFFMGAGYQQGRYGPYNSNYSDWRHGNDLY------GL 54
M+KRI + +L LA A E + F+G YQ +D L G
Sbjct: 1 MLKRIVLLGALGV-LANAEE-SAAFVGVNYQVSMIQNQTKMVNDNGLQKPLIKFPPYAGP 58
Query: 55 NFKLGFVGF--ANKWFGARVYGFLDW-----------------------FNTSGTEHTKT 89
F++G+ F KWFG R YGF D+ F+ G T+
Sbjct: 59 GFEVGYKQFFGKKKWFGMRYYGFFDYAHNRFGVMKKGIPVGESGFIYNSFSFGGNTLTER 118
Query: 90 ---------NLLTYGGGGDLIVNLIPLDKFALGLIGGVQLAGNTWMFPY----------- 129
NL TYG G D + N + + G + G+QLAG++W
Sbjct: 119 DSYQGQYYINLFTYGVGLDTLWNFVNKENMVFGFVVGIQLAGDSWATSISKEIGSYVKHH 178
Query: 130 ---DVNQTRFQFLWNLGGRMRVGDRSAFEAGVKFPMV 163
+ FQFLW G R + ++ E G+K P +
Sbjct: 179 SNSSYSPANFQFLWKFGVRTHIAIHNSLELGIKVPTI 215
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 61.6 bits (148), Expect = 1e-11
Identities = 52/157 (33%), Positives = 72/157 (45%), Gaps = 32/157 (20%)
Query: 30 YQQG---RYGPYNSNYSDWRHGNDLYGLNFKLGFVGFANK--WFGARVYGFLDW-FNTSG 83
YQ G + +NSN N++ G K+G+ F K FG R YGF D+ + G
Sbjct: 512 YQMGFARNFLEHNSN------SNNMNGFGVKMGYKQFFGKKRMFGLRYYGFYDFGYAQFG 565
Query: 84 TEHT--KTNLLTYGGGGDLIVNLIP----LDKFALGLIGGVQLAGNTWMFPY----DVN- 132
TE + K L +YG G D + N+ + +G G+QLAG TW + D N
Sbjct: 566 TESSLVKATLSSYGAGTDFLYNVFTRKRGTEAIDIGFFAGIQLAGQTWKTNFLDQVDGNH 625
Query: 133 ----QTRFQFLWNLGGRMRVG-----DRSAFEAGVKF 160
T FQFL++LG R RS F G++F
Sbjct: 626 LKPKDTSFQFLFDLGIRTNFSKIAHQKRSRFSQGIEF 662
Score = 22.7 bits (47), Expect = 6.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 17 LAGEVNGFFMGAGYQ 31
L E +GFFMG YQ
Sbjct: 25 LMAEDDGFFMGVSYQ 39
>ref|NP_222958.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 479
Score = 61.2 bits (147), Expect = 2e-11
Identities = 53/166 (31%), Positives = 74/166 (43%), Gaps = 33/166 (19%)
Query: 53 GLNFKLGFVGFAN--KWFGARVYGFLDW-FNTSGTEHTKT--NLLTYGGGGDLIVNLIPL 107
G K+G+ F K G R YGFLD+ + G + K NL+TYG G D + N+
Sbjct: 315 GFGAKMGYKQFFTHKKNIGLRYYGFLDYGYANFGDTNLKVGANLVTYGVGTDFLYNVYER 374
Query: 108 ----DKFALGLIGGVQLAGNTWMFPY---------DVNQTRFQFLWNLGGRMRVGDRS-- 152
++ +GL G Q+AG TW DV + FQFL++LG R +
Sbjct: 375 SRRRERTTIGLFFGAQIAGQTWSTNVTNLLSGQRPDVKSSSFQFLFDLGVRTNFAKTNFN 434
Query: 153 ------AFEAGVKFPMV------NQGSKDVGLIRYYSWYVDYVFTF 186
E GVK P++ QGS +R +S+YV Y F
Sbjct: 435 KHRLDQGIEFGVKIPVIAHKYFATQGS-SASYMRNFSFYVGYSVGF 479
>ref|NP_224132.1| putative [Helicobacter pylori J99]
Length = 211
Score = 59.7 bits (143), Expect = 5e-11
Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 28/183 (15%)
Query: 24 FFMGAGYQQGRYGPYNSNYSDWRHGNDLYGLNFKLGF-VGFANKWFGARVYGFLDWFNTS 82
F++ + YQ G+ Y+D + + G +F LG+ + N WF +R Y F+D+ N
Sbjct: 33 FYVASQYQVGKM--IMKKYNDLKR--TIEGASFSLGWEINPTNYWFYSRYYFFMDYGNVI 88
Query: 83 GTEHT--KTNLLTYGGGGDLIVNLIPLDKFALGLIGGVQLAGNTWMFP------------ 128
+ T + N+ TYG GGDLI+ + L G+Q+A NTW
Sbjct: 89 LNKRTGAQANMFTYGFGGDLIMEYNKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWR 148
Query: 129 ----YDVNQTRFQFLWNLGGRMRV---GDRSAFEAGVKFPMVNQGSKDVGLIRYYSWYVD 181
+ + + F+ L +G + + ++ E G+K+P + D +R +S ++
Sbjct: 149 SIQGFSLKTSNFRMLGLVGFKFQTVLFHHDASIEVGIKWPFAFE--YDSPFVRLFSVFIS 206
Query: 182 YVF 184
+ F
Sbjct: 207 HTF 209
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 59.3 bits (142), Expect = 6e-11
Identities = 61/203 (30%), Positives = 82/203 (40%), Gaps = 49/203 (24%)
Query: 31 QQGRYG--PYNSNYS---DWRHG--NDL-YGLNFKLGFVGFANKWFGARVYGFLDW-FNT 81
Q YG P S Y+ +HG N L G+ +K F G A K G R Y F D+ F+
Sbjct: 1037 QANNYGSQPVLSQYAAAKSTQHGMSNGLGVGIGYKY-FFGKARK-LGLRHYFFFDYGFSE 1094
Query: 82 SG--TEHTKTNLLTYGGGGDLIVNLIP----LDKFALGLIGGVQLAGNTWMFPY------ 129
G + K N+ YG G D + NL GL GVQL G TW+
Sbjct: 1095 IGLANQSVKANIFAYGVGTDFLWNLFRRTYNTKALNFGLFAGVQLGGATWLSSLRQQIID 1154
Query: 130 ------DVNQTRFQFLWNLGGRMRVGDRSAF---------------EAGVKFPMVNQ--- 165
D++ T FQ N G R + F E G+K P++NQ
Sbjct: 1155 NWGNANDIHSTNFQVALNFGVRTNFAEFKRFAKKFHNQGVISQKSVEFGIKVPLINQAYL 1214
Query: 166 --GSKDVGLIRYYSWYVDYVFTF 186
DV R Y++Y++Y+ F
Sbjct: 1215 NSAGADVSYRRLYTFYINYIMGF 1237
Score = 24.3 bits (51), Expect = 2.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 1 MIKRIACILSLSTSLALAGEVNGFFMGAGYQQG 33
MIK+ + +L E NG++M GYQ G
Sbjct: 1 MIKKAKKFIPFFLIGSLLAEDNGWYMSVGYQIG 33
>ref|NP_223566.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 520
Score = 55.1 bits (131), Expect = 1e-09
Identities = 52/174 (29%), Positives = 70/174 (39%), Gaps = 33/174 (18%)
Query: 46 RHGNDLYGLNFKLGFVGFANKW--FGARVYGFLDWFNTS-GTEHTKTN--LLTYGGGGDL 100
R N L G K+G+ F K G R YGF + S G T+ N L TYG G D+
Sbjct: 347 RATNILNGFYTKVGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDV 406
Query: 101 IVNLIPLD----KFALGLIGGVQLAGNTWMFPY----------DVNQTRFQFLWNLGGRM 146
+ N+ +G G+QLAG T+ +N T FQFL++ G RM
Sbjct: 407 LYNIFSRSYQNRSVDMGFFSGIQLAGETFQSTLRDDPNVKLHGKINNTHFQFLFDFGMRM 466
Query: 147 RVG---------DRSAFEAGVKFPMV-----NQGSKDVGLIRYYSWYVDYVFTF 186
G ++ E GV P + V R YS Y Y ++F
Sbjct: 467 NFGKLDGKSNRHNQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF 520
>ref|NP_223078.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 200
Score = 46.2 bits (108), Expect = 5e-07
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 8 ILSLSTSLALAGEVNGFFMGAGYQQGRY--GPYNSNYSDWRHGNDLYGLNFKLGF-VGFA 64
ILS+S L E N +M + YQ G P N+N L G + G+ V
Sbjct: 8 ILSMSFLNILNAE-NLSYMSSSYQIGTVFMRPLNTNKL-------LQGASILQGYEVNPK 59
Query: 65 NKWFGARVYGFLDW----FNTSGTEHTKTNLLTYGGGGDLIVNLI--PLDKFALGLIGGV 118
N W +R Y F+D+ FN T + N+ TYG GGD +V P++++A G+
Sbjct: 60 NDWAYSRYYFFIDYGNVLFNNDST--LQANMFTYGVGGDFMVAYAKNPINRWA--FFFGL 115
Query: 119 QLAGNTWM 126
QLA NTW+
Sbjct: 116 QLAANTWI 123
>ref|NP_223757.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 277
Score = 42.4 bits (98), Expect = 8e-06
Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 43/180 (23%)
Query: 22 NGFFMGAGYQQGRYGPYNSN-------------YSD-----WRHGNDLYGLNFKLGFVGF 63
+ F++G GYQ G +SN +SD +++ GL ++G+
Sbjct: 47 SAFYLGLGYQLGSIQHNSSNLNLSQRFNKSQIIFSDSLSPVFKNSYVSNGLGVQVGYKWV 106
Query: 64 AN----KWFGARVYGFLDWF-NTSGTEHTKTNLL-TYGGGGDLIVNLIPLDKFALGLIGG 117
KWFG R F D + G++ +++ ++ TYG DL++N DKF G G
Sbjct: 107 GKHEETKWFGFRWGLFYDLSASLYGSQESQSIIISTYGTYMDLLLNAYNGDKFFAGFNLG 166
Query: 118 VQLAG----------------NTWMFPYDVNQTRFQFLWNLGGRMRVGDRSAFEAGVKFP 161
+ AG NT F VN FQFL +LG R+ + + F G+K P
Sbjct: 167 IAFAGVYDRLSDALLYQTLLQNT--FGGKVNLNGFQFLVDLGVRLG-NEHNQFGFGIKIP 223
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 41.6 bits (96), Expect = 1e-05
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 20/145 (13%)
Query: 38 YNSNYSDWRHGNDLYGLNFKLGFVGFANKWFGARVYGFLDWFNTSGTEHTKTNLLTYGGG 97
Y S+ ++R + + G+N K+G+ + N + G YG + +N + K L+YGGG
Sbjct: 582 YRSSSKNFR--SPILGVNVKIGYQHYFNDYIGLAYYGIIQ-YNYAQANDEKIQQLSYGGG 638
Query: 98 GDLIVNLI----------PLDKF---ALGLIGGVQ-LAGNTWMFPYDVNQTRFQFLWNLG 143
D++ + I P K + G+ GG++ L + ++F +
Sbjct: 639 MDVLFDFITTYTNKKQDHPTKKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTGFN 698
Query: 144 GRMRVGDRSAFEAGVKFPMVNQGSK 168
R + S + GV P++ G K
Sbjct: 699 YRYK---HSKYSIGVSVPLIQSGIK 720
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 40.4 bits (93), Expect = 3e-05
Identities = 35/149 (23%), Positives = 66/149 (43%), Gaps = 20/149 (13%)
Query: 38 YNSNYSDWRHGNDLYGLNFKLGFVGFANKWFGARVYGFLDWFNTSGTEHTKTNLLTYGGG 97
Y ++ + G L G+N K+G+ + N + G YG + +N + + K L+YG G
Sbjct: 571 YRTSKTSRPFGAPLLGVNLKMGYQKYFNDYLGLSSYGIIK-YNYAQANNEKIQQLSYGVG 629
Query: 98 GDLIVNLI---------------PLDKFALGLIGGVQLAGNTWMFPYDVNQTRFQFLWNL 142
D++ + I + +LG+ GG++ N++ Y +NQ + N+
Sbjct: 630 MDVLFDFITNYTNEKNPKSNLTKKVFTSSLGVFGGLRGLYNSY---YLLNQYKGSGNLNV 686
Query: 143 GGRMRVG-DRSAFEAGVKFPMVNQGSKDV 170
G + S + G+ P+V S+ V
Sbjct: 687 TGGLNYRYKHSKYSIGISVPLVQLKSRIV 715
>ref|NP_222795.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 255
Score = 40.0 bits (92), Expect = 4e-05
Identities = 58/253 (22%), Positives = 94/253 (36%), Gaps = 72/253 (28%)
Query: 2 IKRIACILSLSTSLALAGEVNGFFMGAGYQQGRYGPYNSNYSDWRHGN------------ 49
+K+I ++L+ S+++A E +G F+G G+Q N+ + + N
Sbjct: 1 MKKIFLGMALAFSVSMA-EKSGAFLGGGFQYSNLENQNTTRTPSANNNTPINTSMFGNNQ 59
Query: 50 -----------------DLYGLNFKLGFVGFANKW--FGARVYGFLDWFNTS----GTE- 85
+YG++ G+ F K FG R YG+ + + + G++
Sbjct: 60 AAPAQETPSVINTNNYGQMYGVDAMAGYKWFFGKTKRFGFRTYGYYSYNHANLSFVGSKL 119
Query: 86 -----HTKTNLLTYGGGGDLIVNLIPLDK----------FALG-----------LIGGVQ 119
++ N TYG G D + N + F LG L +Q
Sbjct: 120 GIMDGASQVNNFTYGVGFDALYNFYESKEGYNTAGLFVGFGLGGDSFIVQGESYLKSQMQ 179
Query: 120 LAGNTWMFPYDVNQTRFQFLWNLGGRMRVGDRSAFEAGVKFPM-VNQ--------GSKDV 170
+ NT +N + FQ G R S E G K P+ NQ GS DV
Sbjct: 180 ICNNTAGCSASMNTSYFQMPVEFGFRSNFSKHSGIEVGFKLPLFTNQFYKERGVDGSVDV 239
Query: 171 GLIRYYSWYVDYV 183
R +S Y +Y+
Sbjct: 240 FYKRNFSIYFNYM 252
>ref|NP_223588.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 38.9 bits (89), Expect = 9e-05
Identities = 18/55 (32%), Positives = 32/55 (57%), Gaps = 1/55 (1%)
Query: 51 LYGLNFKLGFVGFANKWFGARVYGFLDWFNTSGTEHTKTNLLTYGGGGDLIVNLI 105
+ G+N K+G+ + N + G YG + +N + + K L+YGGG DL+++ I
Sbjct: 508 ILGVNAKIGYQNYFNDFIGLAYYGIIK-YNYAKAVNQKVQQLSYGGGIDLLLDFI 561
Score = 23.9 bits (50), Expect = 2.8
Identities = 9/16 (56%), Positives = 12/16 (74%)
Query: 18 AGEVNGFFMGAGYQQG 33
A E NGFF+ AG++ G
Sbjct: 16 ANEKNGFFIEAGFETG 31
>ref|NP_223367.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 657
Score = 38.9 bits (89), Expect = 9e-05
Identities = 18/55 (32%), Positives = 32/55 (57%), Gaps = 1/55 (1%)
Query: 51 LYGLNFKLGFVGFANKWFGARVYGFLDWFNTSGTEHTKTNLLTYGGGGDLIVNLI 105
+ G+N K+G+ + N + G YG + +N + + K L+YGGG DL+++ I
Sbjct: 497 ILGVNAKIGYQNYFNDFIGLAYYGIIK-YNYAKAVNQKVQQLSYGGGIDLLLDFI 550
Score = 23.9 bits (50), Expect = 2.8
Identities = 9/16 (56%), Positives = 12/16 (74%)
Query: 18 AGEVNGFFMGAGYQQG 33
A E NGFF+ AG++ G
Sbjct: 16 ANEKNGFFIEAGFETG 31
>ref|NP_222838.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 286
Score = 37.0 bits (84), Expect = 3e-04
Identities = 53/225 (23%), Positives = 79/225 (34%), Gaps = 73/225 (32%)
Query: 10 SLSTSLALAGEVNGFFMGAGYQQG-----------------RYGPYNSNYSDW------- 45
++ TS GE N F+G YQ G + G Y SN +
Sbjct: 28 AIKTSPTKKGERNAAFIGIDYQLGMLSTTAQNCSHGNCNGNQSGAYGSNTPNMPTASNPT 87
Query: 46 ---RHG-----------NDLYGLN---FKLGFVGFANK--WFGARVYGFLDW-------- 78
HG N Y +N F +G+ F K FG R YGF D+
Sbjct: 88 GGLTHGALGTRGYKGLSNQQYAINGFGFVVGYKHFFKKAPQFGMRYYGFFDFASSYYKYY 147
Query: 79 -FNTSGTEHTKTN----LLTYGGGGDLIVN--LIPLDKFALGLIGGVQLAGNTW------ 125
+N G + + YG G D++ N + + G GV + G +W
Sbjct: 148 TYNDYGMRDARKGSQSFMFGYGAGTDVLFNPAIFNRENLHFGFFLGVAIGGTSWGPTNYY 207
Query: 126 ------MFPYDVNQTRFQFLWNLGGRMRVGDR-SAFEAGVKFPMV 163
+ + + FQ L N G +R+G + FE G+K +
Sbjct: 208 FKDLAEEYRGSFHPSNFQVLVN--GGIRLGTKHQGFEIGLKIQTI 250
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 36.2 bits (82), Expect = 6e-04
Identities = 40/154 (25%), Positives = 66/154 (41%), Gaps = 33/154 (21%)
Query: 40 SNYSDWRHGNDLYGLNFKLGFVGFANKWF--GARVYGFLDW------FNTSGTEHT-KTN 90
S+YS ++ + +YG+ +G+ F K G R Y F D+ F +G + K N
Sbjct: 182 SSYS--KNVSSMYGVGLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMN 239
Query: 91 LLTYGGGGDLIVNLIPLDK--FALGLIGGVQLAGNTWM--------------------FP 128
YG G D + N I + ++G G LAG++W+ +
Sbjct: 240 NHLYGLGIDYLFNFIDNAQKHSSVGFYVGFALAGSSWVGSGLGMWVSQMDFINNYLTDYR 299
Query: 129 YDVNQTRFQFLWNLGGRMRVGDRSAFEAGVKFPM 162
++ + FQ N G R+ V + FE G+K P+
Sbjct: 300 AKMHTSFFQIPLNFGVRVNVDRHNGFEMGLKIPL 333
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 36.2 bits (82), Expect = 6e-04
Identities = 40/154 (25%), Positives = 66/154 (41%), Gaps = 33/154 (21%)
Query: 40 SNYSDWRHGNDLYGLNFKLGFVGFANKWF--GARVYGFLDW------FNTSGTEHT-KTN 90
S+YS ++ + +YG+ +G+ F K G R Y F D+ F +G + K N
Sbjct: 187 SSYS--KNVSSMYGVGLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMN 244
Query: 91 LLTYGGGGDLIVNLIPLDK--FALGLIGGVQLAGNTWM--------------------FP 128
YG G D + N I + ++G G LAG++W+ +
Sbjct: 245 NHLYGLGIDYLFNFIDNAQKHSSVGFYVGFALAGSSWVGSGLGMWVSQMDFINNYLTDYR 304
Query: 129 YDVNQTRFQFLWNLGGRMRVGDRSAFEAGVKFPM 162
++ + FQ N G R+ V + FE G+K P+
Sbjct: 305 AKMHTSFFQIPLNFGVRVNVDRHNGFEMGLKIPL 338
>ref|NP_223299.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 307
Score = 30.4 bits (67), Expect = 0.030
Identities = 15/35 (42%), Positives = 20/35 (56%)
Query: 1 MIKRIACILSLSTSLALAGEVNGFFMGAGYQQGRY 35
M K + LSLS S L E NGF++G + +G Y
Sbjct: 1 MKKVLLLTLSLSLSFWLHAERNGFYLGLNFAEGSY 35
>ref|NP_223088.1| putative [Helicobacter pylori J99]
Length = 289
Score = 30.4 bits (67), Expect = 0.030
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 33/174 (18%)
Query: 17 LAGEVNGFFMGA-----GYQQGRYGPYNSNYSDWRHGNDLYGLNFKLGFVG-FAN----- 65
+A +GFF+G G Y + S+ + LYGL + G+ FAN
Sbjct: 107 MAKNKSGFFIGVILGDIGINANPYEKFEL-LSNIQASPLLYGL--RSGYQKYFANGISAL 163
Query: 66 KWFGARVYGFLDWFNTSGTEHTKTNLLTYGGGGDLIVNLIPLDK---FALGLIGGVQLAG 122
+++G + G + F + +T L DL+++ P+DK FALG+ GGV G
Sbjct: 164 RFYGEYLGGAMKGFKSDSLASYQTASLNI----DLLMDK-PIDKEKRFALGIFGGV---G 215
Query: 123 NTWMFPY-DVNQTR-------FQFLWNLGGRMRVGDRSAFEAGVKFPMVNQGSK 168
W Y ++ + R F + NLG M + + FE +K P + + S+
Sbjct: 216 VGWNGMYQNLKEIRGYSQPNAFGLVLNLGVSMTLNLKHRFELALKMPPLKETSQ 269
>ref|NP_223381.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 305
Score = 28.5 bits (62), Expect = 0.12
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 110 FALGLIGGVQLAGNTWMFPYDVNQTRFQ----------FLWNLGGRMRVGDRSAFEAGVK 159
F +G+ GG + P NQ Q F N GG + +G R+ F G+K
Sbjct: 201 FKIGVFGGGGVEYAILWSPQYKNQNTHQDDKFFAAGGGFFVNFGGSLYIGKRNRFNVGLK 260
Query: 160 FP 161
P
Sbjct: 261 IP 262
>ref|NP_223089.1| putative [Helicobacter pylori J99]
Length = 313
Score = 28.5 bits (62), Expect = 0.12
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 24/85 (28%)
Query: 11 LSTSLALAGEVNGFFMGAGYQQGRYGPYNSNYSDWRHGNDLYGLN--------------- 55
L S ++A + +G F+G GY YG N +Y D YG N
Sbjct: 77 LLKSFSIADDKSGVFLGGGY---AYGELNLSYQG--EMLDRYGANAPSAFKNNININAPV 131
Query: 56 ----FKLGFVGFANKWFGARVYGFL 76
K G+ + +FG R YG L
Sbjct: 132 SMISVKFGYQKYFVPYFGTRFYGDL 156
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 25.4 bits (54), Expect = 0.98
Identities = 10/28 (35%), Positives = 16/28 (56%)
Query: 152 SAFEAGVKFPMVNQGSKDVGLIRYYSWY 179
+AF + + Q KD+GL+ YY +Y
Sbjct: 595 NAFLNVINLDAITQNPKDLGLLAYYLFY 622
>ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori J99]
Length = 1288
Score = 23.9 bits (50), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (51%), Gaps = 2/38 (5%)
Query: 80 NTSGTEHTKTNLLT--YGGGGDLIVNLIPLDKFALGLI 115
NT TE T ++ + GG D +VN+ L+ A G I
Sbjct: 367 NTQKTETEPTQVIDGPFAGGKDTVVNIFHLNTKADGTI 404
>ref|NP_223260.1| putative [Helicobacter pylori J99]
Length = 490
Score = 23.9 bits (50), Expect = 2.8
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 99 DLIVNLIPLDKFALGLI----GGVQLAGNTWMFPYDVNQTRFQFLWNLGGRMRVGDRSAF 154
D ++N + F + I VQ +T FPY +F WNL + V +
Sbjct: 138 DRLLNTLQKSAFYVFFIVVGSNAVQAFVSTGPFPYIGQSDPVRFSWNL--KESVWSMENW 195
Query: 155 EAGVKFPMVNQGSKDVG 171
+ +KFP G +DVG
Sbjct: 196 D-HLKFPRSVLGRRDVG 211
>ref|NP_223623.1| putative [Helicobacter pylori J99]
Length = 431
Score = 23.5 bits (49), Expect = 3.7
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 119 QLAGNTWMFPYDVNQTRFQFLWNLGGRMRVGDRSAFEAGVKFPMVN 164
Q + N W FPY N+T + N G + R+ K P V+
Sbjct: 62 QRSVNAWDFPYIFNET--SMVKNFQGIVEAQPRTLLMVRPKLPWVS 105
>ref|NP_222856.1| Cytochrome oxidase (CBB3-TYPE) [Helicobacter pylori J99]
Length = 292
Score = 23.1 bits (48), Expect = 4.8
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 15/54 (27%)
Query: 47 HGNDLYGLNFKLGFVGFANKWFGARVYGFLDWFNTSGTEHTKTNLLTYGGGGDL 100
HGND GL N+ F A + T GTE N+LT+G G++
Sbjct: 223 HGNDGKGLQ--------ENQVFAADL-------TTYGTESFLRNILTHGKKGNI 261
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.325 0.145 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,919
Number of Sequences: 1491
Number of extensions: 9920
Number of successful extensions: 149
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 66
length of query: 186
length of database: 494,079
effective HSP length: 73
effective length of query: 113
effective length of database: 385,236
effective search space: 43531668
effective search space used: 43531668
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)