BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645105|ref|NP_207275.1| outer membrane protein
(omp12) [Helicobacter pylori 26695]
(367 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 660 0.0
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 657 0.0
ref|NP_222795.1| putative Outer membrane protein [Helicobac... 146 9e-37
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 113 9e-27
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 113 9e-27
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 108 2e-25
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 107 4e-25
ref|NP_222958.1| putative Outer membrane protein [Helicobac... 106 8e-25
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 105 1e-24
ref|NP_222743.1| putative Outer membrane protein [Helicobac... 104 4e-24
ref|NP_223820.1| putative Outer membrane function [Helicoba... 101 3e-23
ref|NP_223882.1| outer membrane protein - adhesin [Helicoba... 100 5e-23
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 100 5e-23
ref|NP_223377.1| putative Outer membrane protein [Helicobac... 100 5e-23
ref|NP_224080.1| putative Outer membrane protein [Helicobac... 100 1e-22
ref|NP_223551.1| outer membrane protein - adhesin [Helicoba... 100 1e-22
ref|NP_223332.1| putative Outer membrane protein [Helicobac... 100 1e-22
ref|NP_224112.1| putative Outer membrane protein [Helicobac... 96 2e-21
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 95 2e-21
ref|NP_223363.1| Outer membrane protein/porin [Helicobacter... 92 3e-20
ref|NP_223566.1| Outer membrane protein/porin [Helicobacter... 91 4e-20
ref|NP_222838.1| putative Outer membrane protein [Helicobac... 86 1e-18
ref|NP_222959.1| putative Outer membrane protein [Helicobac... 83 1e-17
ref|NP_223567.1| Outer membrane protein/porin [Helicobacter... 73 1e-14
ref|NP_223027.1| putative Outer membrane protein [Helicobac... 72 2e-14
ref|NP_223450.1| putative Outer membrane protein [Helicobac... 65 3e-12
ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobac... 61 5e-11
ref|NP_223299.1| putative Outer membrane protein [Helicobac... 56 1e-09
ref|NP_223757.1| putative Outer membrane protein [Helicobac... 54 8e-09
ref|NP_222814.1| putative [Helicobacter pylori J99] 49 2e-07
ref|NP_223751.1| putative Outer membrane protein [Helicobac... 47 8e-07
ref|NP_223078.1| putative Outer membrane protein [Helicobac... 42 3e-05
ref|NP_223725.1| putative outer membrane protein [Helicobac... 41 4e-05
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 39 2e-04
ref|NP_223142.1| putative Outer membrane protein [Helicobac... 38 5e-04
ref|NP_223088.1| putative [Helicobacter pylori J99] 33 0.012
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 33 0.012
ref|NP_223451.1| NEURAMINYLLACTOSE-BINDING HEMAGGLUTININ PR... 32 0.020
ref|NP_223437.1| putative Outer membrane protein [Helicobac... 31 0.044
ref|NP_223273.1| putative [Helicobacter pylori J99] 31 0.044
ref|NP_223089.1| putative [Helicobacter pylori J99] 29 0.17
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 28 0.29
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 28 0.49
ref|NP_223865.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III ... 27 0.84
ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori... 27 1.1
ref|NP_223787.1| putative [Helicobacter pylori J99] 26 1.4
ref|NP_223636.1| DNA transfer protein [Helicobacter pylori ... 26 1.4
ref|NP_223381.1| putative Outer membrane protein [Helicobac... 26 1.4
ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacte... 26 1.4
ref|NP_224132.1| putative [Helicobacter pylori J99] 26 1.9
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 26 1.9
ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori ... 26 1.9
ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter py... 25 2.4
ref|NP_223560.1| putative [Helicobacter pylori J99] 25 3.2
ref|NP_223050.1| putative [Helicobacter pylori J99] 25 3.2
ref|NP_223802.1| putative PYRROLINE-5-CARBOXYLATE REDUCTASE... 25 4.1
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 25 4.1
ref|NP_223459.1| putative lipopolysaccharide biosynthesis p... 24 5.4
ref|NP_223207.1| cag island protein [Helicobacter pylori J99] 24 5.4
ref|NP_223145.1| Molybdate ABC transporter, ATP-binding pro... 24 5.4
ref|NP_222748.1| putative [Helicobacter pylori J99] 24 5.4
ref|NP_223990.1| putative [Helicobacter pylori J99] 24 7.1
ref|NP_223109.1| putative [Helicobacter pylori J99] 24 7.1
ref|NP_223065.1| putative [Helicobacter pylori J99] 24 7.1
ref|NP_223993.1| PHOSPHATIDYLSERINE DECARBOXYLASE [Helicoba... 23 9.2
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 23 9.2
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 660 bits (1702), Expect = 0.0
Identities = 326/366 (89%), Positives = 343/366 (93%), Gaps = 3/366 (0%)
Query: 2 QKALLHSSFFLPLFLSFCIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQIISNAQNK 61
QK LL S LFLS+CIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQ ISNAQNK
Sbjct: 4 QKTLLSLSL---LFLSYCIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQTISNAQNK 60
Query: 62 IYKLHQVKNEITSMPKTFAYINNALKNNSKLTPTEMQAEQYYLQSTFQNIEKIVMLSGGV 121
IYKL+QVKNEIT+MP TF YINNALKNN+KLTPTE QAE YYLQST QNIEKIVMLSGGV
Sbjct: 61 IYKLNQVKNEITNMPNTFNYINNALKNNAKLTPTEKQAETYYLQSTLQNIEKIVMLSGGV 120
Query: 122 SSNPQLVQALEKMQEPITNPLEFEENLRNLEVQFAQSQNRMLSSLSSQIAAISNSLNALD 181
+SNP+LVQALEKMQEPITNPLE ENL+NLE+QF+QSQN MLSSLSSQIA ISNSLNALD
Sbjct: 121 ASNPKLVQALEKMQEPITNPLELVENLKNLELQFSQSQNSMLSSLSSQIAQISNSLNALD 180
Query: 182 PNSYSKNISSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMNN 241
P+SYSKN+SSMYGV LSVGYKHFFTKKKNQG RYYLFYDYGYTNFGFVGNGFDGLGKMNN
Sbjct: 181 PSSYSKNVSSMYGVGLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMNN 240
Query: 242 HLYGLGIDYLYNFIDNAKKHSSVGFYLGFALAGSSWVGSGLSMWVSQTDFINNYLTGYQA 301
HLYGLGIDYL+NFIDNA+KHSSVGFY+GFALAGSSWVGSGL MWVSQ DFINNYLT Y+A
Sbjct: 241 HLYGLGIDYLFNFIDNAQKHSSVGFYVGFALAGSSWVGSGLGMWVSQMDFINNYLTDYRA 300
Query: 302 KMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAMNSFYETHGKGLNTSLFFKRLVMFNV 361
KMHTSFFQIPLNFGVRVNV+RHNGFEMGLKIPLA+NSFYETHGKGLN SLFFKRLVMFNV
Sbjct: 301 KMHTSFFQIPLNFGVRVNVDRHNGFEMGLKIPLAVNSFYETHGKGLNASLFFKRLVMFNV 360
Query: 362 SYVYSF 367
SYVYSF
Sbjct: 361 SYVYSF 366
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 657 bits (1695), Expect = 0.0
Identities = 326/368 (88%), Positives = 342/368 (92%), Gaps = 2/368 (0%)
Query: 2 QKALLHSSFFLPL--FLSFCIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQIISNAQ 59
QK L S FL L FLSF IAEENGAYASVGFEYSISHAVEHNNPFLNQERIQ ISNAQ
Sbjct: 4 QKTLSSLSLFLSLSLFLSFSIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQTISNAQ 63
Query: 60 NKIYKLHQVKNEITSMPKTFAYINNALKNNSKLTPTEMQAEQYYLQSTFQNIEKIVMLSG 119
NKIYKL+QVKNEIT+MP TF YINNALKNN+KLTPTE QAE YYLQST QNIEKIVMLSG
Sbjct: 64 NKIYKLNQVKNEITNMPNTFNYINNALKNNAKLTPTEKQAETYYLQSTLQNIEKIVMLSG 123
Query: 120 GVSSNPQLVQALEKMQEPITNPLEFEENLRNLEVQFAQSQNRMLSSLSSQIAAISNSLNA 179
GV+SNP+L QALEKMQEPITNPLE ENL+NLE+QF+QSQN MLSSLSSQIA ISNSLNA
Sbjct: 124 GVASNPKLAQALEKMQEPITNPLELVENLKNLELQFSQSQNSMLSSLSSQIAQISNSLNA 183
Query: 180 LDPNSYSKNISSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKM 239
LDP+SYSKN+SSMYGV LSVGYKHFFTKKKNQG RYYLFYDYGYTNFGFVGNGFDGLGKM
Sbjct: 184 LDPSSYSKNVSSMYGVGLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKM 243
Query: 240 NNHLYGLGIDYLYNFIDNAKKHSSVGFYLGFALAGSSWVGSGLSMWVSQTDFINNYLTGY 299
NNHLYGLGIDYL+NFIDNA+KHSSVGFY+GFALAGSSWVGSGL MWVSQ DFINNYLT Y
Sbjct: 244 NNHLYGLGIDYLFNFIDNAQKHSSVGFYVGFALAGSSWVGSGLGMWVSQMDFINNYLTDY 303
Query: 300 QAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAMNSFYETHGKGLNTSLFFKRLVMF 359
+AKMHTSFFQIPLNFGVRVNV+RHNGFEMGLKIPLA+NSFYETHGKGLN SLFFKRLVMF
Sbjct: 304 RAKMHTSFFQIPLNFGVRVNVDRHNGFEMGLKIPLAVNSFYETHGKGLNASLFFKRLVMF 363
Query: 360 NVSYVYSF 367
NVSYVYSF
Sbjct: 364 NVSYVYSF 371
>ref|NP_222795.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 255
Score = 146 bits (368), Expect = 9e-37
Identities = 75/201 (37%), Positives = 114/201 (56%), Gaps = 8/201 (3%)
Query: 167 SSQIAAISNSLNALDPNSYSKNISSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNF 226
++Q A + + ++ N+Y + MYGV GYK FF K K G R Y +Y Y + N
Sbjct: 57 NNQAAPAQETPSVINTNNYGQ----MYGVDAMAGYKWFFGKTKRFGFRTYGYYSYNHANL 112
Query: 227 GFVGNGF---DGLGKMNNHLYGLGIDYLYNFIDNAKKHSSVGFYLGFALAGSSWVGSGLS 283
FVG+ DG ++NN YG+G D LYNF ++ + +++ G ++GF L G S++ G S
Sbjct: 113 SFVGSKLGIMDGASQVNNFTYGVGFDALYNFYESKEGYNTAGLFVGFGLGGDSFIVQGES 172
Query: 284 MWVSQTDFINNYLTGYQAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAMNSFYETH 343
SQ NN G A M+TS+FQ+P+ FG R N ++H+G E+G K+PL N FY+
Sbjct: 173 YLKSQMQICNN-TAGCSASMNTSYFQMPVEFGFRSNFSKHSGIEVGFKLPLFTNQFYKER 231
Query: 344 GKGLNTSLFFKRLVMFNVSYV 364
G + +F+KR +Y+
Sbjct: 232 GVDGSVDVFYKRNFSIYFNYM 252
Score = 25.0 bits (53), Expect = 3.2
Identities = 12/27 (44%), Positives = 19/27 (69%), Gaps = 2/27 (7%)
Query: 11 FLPLFLSFCI--AEENGAYASVGFEYS 35
FL + L+F + AE++GA+ GF+YS
Sbjct: 5 FLGMALAFSVSMAEKSGAFLGGGFQYS 31
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 113 bits (282), Expect = 9e-27
Identities = 93/317 (29%), Positives = 152/317 (47%), Gaps = 42/317 (13%)
Query: 68 VKNEITSMPKTFAYINNALKNNSKLTPTEMQAEQYYLQSTFQNIEKIVMLSGGVSSNPQL 127
VK + S+ + AY N + + L+ T + ++ ST N K + + G+S+ P
Sbjct: 405 VKETLNSLEQHTAYYGNQVNQDRALSQTILNFKEAL--STLGNDSKAI--NSGISNLPN- 459
Query: 128 VQALEKMQEPITNPLEFEENLRNLEVQFAQSQNRMLSSLSSQIAAISNSLNALDPNSYSK 187
++L+ M NP E L L S+ L +++ ++ N + +Y
Sbjct: 460 AKSLQNMTHATQNP-NSPEGL--LTYSLDTSKYNQLQTVAQELG--KNPFRRIGVINYQN 514
Query: 188 NISSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLG 247
N +M G+ + GYK FF KK+N GLRYY F+DY N ++ + F + YG+G
Sbjct: 515 NNGAMNGIGVQAGYKQFFGKKRNWGLRYYGFFDY---NHAYIKSNFFN-SASDVWTYGVG 570
Query: 248 IDYLYNFIDNAKKH-------SSVGFYLGFALAGSSWVGSGLSMWVSQTDFINNYLTGYQ 300
+D LYNFI++ + SVG + GFALAG+SW+ S V+ T +N Y
Sbjct: 571 MDALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLN---SQQVNLT-MMNGI---YN 623
Query: 301 AKMHTSFFQIPLNFGVRVNVNR----------HNGFEMGLKIPLAMNSFYETHGKGLNTS 350
A + S FQ + G+R+N+ R +G E+G+KIP +Y G
Sbjct: 624 ANVSASNFQFLFDLGLRMNLARPKKKDSDHAAQHGMELGVKIPTINTDYYSFMG----AE 679
Query: 351 LFFKRLVMFNVSYVYSF 367
L ++RL ++YV+++
Sbjct: 680 LKYRRLYSVYLNYVFAY 696
Score = 27.7 bits (60), Expect = 0.49
Identities = 56/220 (25%), Positives = 88/220 (39%), Gaps = 29/220 (13%)
Query: 1 MQKALLHSSFFLPLFLSFCIAEENGAYASVGFEYSISHAVE--HNNPFLNQ--ERIQIIS 56
++K+L SF L LS AE++G Y SVG Y I AV+ N L +R +S
Sbjct: 3 IKKSLFALSFSLMASLSR--AEDDGFYMSVG--YQIGEAVQKVKNTGALQNLADRYDNLS 58
Query: 57 NAQNKIYKLHQVKNEITSMPKTFAYINNALKNNSKLTPTEMQAEQYYLQSTFQN--IEKI 114
N N+ L+ + N ++ I+N + LT + Y + N +
Sbjct: 59 NLLNQYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMW 118
Query: 115 VMLSGGVSSNPQLVQALEKMQEPITNPLEFEENLRNLEVQ-FAQSQNRMLSSLSSQIAAI 173
+++ G+S P P E+L N V+ F + N ++ S
Sbjct: 119 QVIAFGISCGP--------------GPNLGPEHLENGGVRSFDNTPNYSYNTGSGTTTTT 164
Query: 174 SNSLNALDPNSYSKNISSMYGVSLSVGYKHFFTK-KKNQG 212
N + + PN SS Y V L+ Y+ T +NQG
Sbjct: 165 CNGASNVGPNGILS--SSEYQV-LNTAYQTIQTALNQNQG 201
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 113 bits (282), Expect = 9e-27
Identities = 93/317 (29%), Positives = 152/317 (47%), Gaps = 42/317 (13%)
Query: 68 VKNEITSMPKTFAYINNALKNNSKLTPTEMQAEQYYLQSTFQNIEKIVMLSGGVSSNPQL 127
VK + S+ + AY N + + L+ T + ++ ST N K + + G+S+ P
Sbjct: 405 VKETLNSLEQHTAYYGNQVNQDRALSQTILNFKEAL--STLGNDSKAI--NSGISNLPN- 459
Query: 128 VQALEKMQEPITNPLEFEENLRNLEVQFAQSQNRMLSSLSSQIAAISNSLNALDPNSYSK 187
++L+ M NP E L L S+ L +++ ++ N + +Y
Sbjct: 460 AKSLQNMTHATQNP-NSPEGL--LTYSLDTSKYNQLQTVAQELG--KNPFRRIGVINYQN 514
Query: 188 NISSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLG 247
N +M G+ + GYK FF KK+N GLRYY F+DY N ++ + F + YG+G
Sbjct: 515 NNGAMNGIGVQAGYKQFFGKKRNWGLRYYGFFDY---NHAYIKSNFFN-SASDVWTYGVG 570
Query: 248 IDYLYNFIDNAKKH-------SSVGFYLGFALAGSSWVGSGLSMWVSQTDFINNYLTGYQ 300
+D LYNFI++ + SVG + GFALAG+SW+ S V+ T +N Y
Sbjct: 571 MDALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLN---SQQVNLT-MMNGI---YN 623
Query: 301 AKMHTSFFQIPLNFGVRVNVNR----------HNGFEMGLKIPLAMNSFYETHGKGLNTS 350
A + S FQ + G+R+N+ R +G E+G+KIP +Y G
Sbjct: 624 ANVSASNFQFLFDLGLRMNLARPKKKDSDHAAQHGMELGVKIPTINTDYYSFMG----AE 679
Query: 351 LFFKRLVMFNVSYVYSF 367
L ++RL ++YV+++
Sbjct: 680 LKYRRLYSVYLNYVFAY 696
Score = 27.7 bits (60), Expect = 0.49
Identities = 56/220 (25%), Positives = 88/220 (39%), Gaps = 29/220 (13%)
Query: 1 MQKALLHSSFFLPLFLSFCIAEENGAYASVGFEYSISHAVE--HNNPFLNQ--ERIQIIS 56
++K+L SF L LS AE++G Y SVG Y I AV+ N L +R +S
Sbjct: 3 IKKSLFALSFSLMASLSR--AEDDGFYMSVG--YQIGEAVQKVKNTGALQNLADRYDNLS 58
Query: 57 NAQNKIYKLHQVKNEITSMPKTFAYINNALKNNSKLTPTEMQAEQYYLQSTFQN--IEKI 114
N N+ L+ + N ++ I+N + LT + Y + N +
Sbjct: 59 NLLNQYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMW 118
Query: 115 VMLSGGVSSNPQLVQALEKMQEPITNPLEFEENLRNLEVQ-FAQSQNRMLSSLSSQIAAI 173
+++ G+S P P E+L N V+ F + N ++ S
Sbjct: 119 QVIAFGISCGP--------------GPNLGPEHLENGGVRSFDNTPNYSYNTGSGTTTTT 164
Query: 174 SNSLNALDPNSYSKNISSMYGVSLSVGYKHFFTK-KKNQG 212
N + + PN SS Y V L+ Y+ T +NQG
Sbjct: 165 CNGASNVGPNGILS--SSEYQV-LNTAYQTIQTALNQNQG 201
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 108 bits (271), Expect = 2e-25
Identities = 92/318 (28%), Positives = 151/318 (46%), Gaps = 44/318 (13%)
Query: 68 VKNEITSMPKTFAYINNA---LKNNSKLTPT--EMQAEQYYLQSTFQNIEKIVMLSGGVS 122
V+ IT++ + A+ +K + L T + + L +T+ +I +
Sbjct: 377 VEETITALNNSLAHFGTQAEQIKQSELLARTILDFRGSLSNLNNTYNSITT-------TA 429
Query: 123 SNPQLVQALEKMQEPITNPLEFEENLRNLEVQFAQSQNRMLSSLSSQIAAISNSLNALDP 182
SN L+ + TNP N L+ + +Q+ LS+ N +
Sbjct: 430 SNTPNSPFLKNLISQSTNP----NNPGGLQAVYQVNQSAYSQLLSATQELGHNPFRRVGL 485
Query: 183 NSYSKNISSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMNNH 242
S N +M G+ + VGYK FF +K+ GLRYY F+DY N ++ + F +
Sbjct: 486 ISSQTNNGAMNGIGVQVGYKQFFGEKRRWGLRYYGFFDY---NHAYIKSSFFN-SASDVF 541
Query: 243 LYGLGIDYLYNFI-DNAKKHSSVGF--YLGFALAGSSWVGSGLSMWVSQTDFINNYLTGY 299
YG+G D LYNFI D K+S + F + G ALAG+SW+ S +V+ F NN+ Y
Sbjct: 542 TYGVGTDVLYNFINDKTTKNSKISFGVFGGIALAGTSWLN---SQYVNLATF-NNF---Y 594
Query: 300 QAKMHTSFFQIPLNFGVRVNVNRH----------NGFEMGLKIPLAMNSFYETHGKGLNT 349
AKM+ + FQ N G+R+N+ ++ +G E+G+KIP ++Y L T
Sbjct: 595 SAKMNVANFQFLFNLGLRMNLAKNKKKASDHAAQHGVELGVKIPTINTNYYSL----LGT 650
Query: 350 SLFFKRLVMFNVSYVYSF 367
L ++RL ++YV+++
Sbjct: 651 QLQYRRLYSVYLNYVFAY 668
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 107 bits (268), Expect = 4e-25
Identities = 86/339 (25%), Positives = 148/339 (43%), Gaps = 55/339 (16%)
Query: 60 NKIYKLHQVKNEITSMPKTFAYINNALKNNSKLTPTEMQAEQYYLQSTFQNIEKIVMLSG 119
N + + + N +T KT +I N N S + QA + FQ L
Sbjct: 923 NGVSDTNNLINLLTEFIKTAGFIQNKDSNVSTSLTSAFQAITSAISQGFQ------ALQN 976
Query: 120 GVSSNPQLVQALEKMQEPITNPLEFEENLRNL--EVQFAQSQNRMLSSLSSQIAAISNSL 177
+S N ++ L+++ T F + LR L + F Q +++ ++ + + N+
Sbjct: 977 DISPNA-ILTLLQEITSNTTTIQSFSQTLRQLLGDKTFFMVQQKLIDAMINARNQVQNAQ 1035
Query: 178 NALDPNSYSKNISSMY------------GVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTN 225
N + N S+ + S Y G+ + +GYK+FF K + GLR+Y F+DYG++
Sbjct: 1036 NQAN-NYGSQPVLSQYAAAKSTQHGMSNGLGVGIGYKYFFGKARKLGLRHYFFFDYGFSE 1094
Query: 226 FGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNA--KKHSSVGFYLGFALAGSSWVGSGLS 283
G K N YG+G D+L+N K + G + G L G++W+ S
Sbjct: 1095 IGLANQSV----KANIFAYGVGTDFLWNLFRRTYNTKALNFGLFAGVQLGGATWLSS--- 1147
Query: 284 MWVSQTDFINNYLTGYQAKMHTSFFQIPLNFGVRVNVNRHNGF---------------EM 328
+ I+N+ G +H++ FQ+ LNFGVR N F E
Sbjct: 1148 ---LRQQIIDNW--GNANDIHSTNFQVALNFGVRTNFAEFKRFAKKFHNQGVISQKSVEF 1202
Query: 329 GLKIPLAMNSFYETHGKGLNTSLFFKRLVMFNVSYVYSF 367
G+K+PL ++ + G ++ ++RL F ++Y+ F
Sbjct: 1203 GIKVPLINQAYLNSAGADVS----YRRLYTFYINYIMGF 1237
Score = 33.9 bits (76), Expect = 0.007
Identities = 51/192 (26%), Positives = 81/192 (41%), Gaps = 32/192 (16%)
Query: 11 FLPLFL-SFCIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQIISNAQNKIYKLHQVK 69
F+P FL +AE+NG Y SVG++ + +N L + I I S Q+ I
Sbjct: 8 FIPFFLIGSLLAEDNGWYMSVGYQIGGTQQFINNKQLLENQNI-INSITQSAINIAGPTT 66
Query: 70 NEITSMPKTFA---------YINNALKNNSKLTPTEMQAEQYYLQSTFQNI-EKIVMLSG 119
IT +T + N L+ S + + + +Y +I ++I+ L G
Sbjct: 67 GLITLSSQTVIDALGYGVSNTVGNQLEGISNILNQIGKRKDFYSSRQISSISQQIIGLKG 126
Query: 120 GVSSNPQLVQALEKMQEPITNPLEFEENLRNLEVQFAQSQNRMLSSLSSQIAAISNSLNA 179
SS+P L+ IT L L N + F Q +LSS I + NSLN
Sbjct: 127 --SSDP-----LKAHSSQITAKL-----LSNTQSAFDQG-----IALSSNIISAVNSLN- 168
Query: 180 LDPNSYSKNISS 191
P++ S+ + +
Sbjct: 169 --PSNNSQEVKA 178
>ref|NP_222958.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 479
Score = 106 bits (265), Expect = 8e-25
Identities = 72/233 (30%), Positives = 116/233 (48%), Gaps = 41/233 (17%)
Query: 155 FAQSQNRMLSSLSSQIAAISNSLNALDPNSYSKNI--------SSMYGVSLSVGYKHFFT 206
+ + +R ++ +++ + +S ++L SY N+ +SM G +GYK FFT
Sbjct: 268 YKKGLDRTINIINAVLGQFESSASSLYKISYIPNLFSLKDYQSASMNGFGAKMGYKQFFT 327
Query: 207 KKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMNNHL--YGLGIDYLYNFIDNAKK--HS 262
KKN GLRYY F DYGY NFG D K+ +L YG+G D+LYN + +++ +
Sbjct: 328 HKKNIGLRYYGFLDYGYANFG------DTNLKVGANLVTYGVGTDFLYNVYERSRRRERT 381
Query: 263 SVGFYLGFALAGSSWVGSGLSMWVSQTDFINNYLTGYQAKMHTSFFQIPLNFGVR----- 317
++G + G +AG +W + + N L+G + + +S FQ + GVR
Sbjct: 382 TIGLFFGAQIAGQTW-----------STNVTNLLSGQRPDVKSSSFQFLFDLGVRTNFAK 430
Query: 318 VNVNRH---NGFEMGLKIPLAMNSFYETHGKGLNTSLFFKRLVMFNVSYVYSF 367
N N+H G E G+KIP+ + ++ T G +S + R F V Y F
Sbjct: 431 TNFNKHRLDQGIEFGVKIPVIAHKYFATQG----SSASYMRNFSFYVGYSVGF 479
Score = 27.3 bits (59), Expect = 0.64
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 18/139 (12%)
Query: 16 LSFCIAEENGAYASVGFEYSISHAVEHNNPFLN-QERIQIISNAQNKI--------YKLH 66
+S C AEE+GA+ + ++ S++ N F QE Q+I + ++ Y L
Sbjct: 18 MSLCNAEEDGAFFVIDYQTSLARQELKNPGFTQAQELKQLIRDGAVRLQTSAIPLSYYLD 77
Query: 67 QVKNEITSMPKTFAYINNALKNNSKLTPTEMQAEQYYLQSTFQNIEKIVMLSGGVSSN-- 124
+ N KT ++ +LKNN + + L+ + + K++ LS +S
Sbjct: 78 ILGN------KTKTLLSESLKNNPQQPNGQPNQALVNLEQSLGILGKLLDLSQQYASEGV 131
Query: 125 -PQLVQALEKMQEPITNPL 142
LV + K Q IT+ +
Sbjct: 132 IKPLVVDVGKEQIGITDSM 150
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 105 bits (263), Expect = 1e-24
Identities = 101/367 (27%), Positives = 169/367 (45%), Gaps = 70/367 (19%)
Query: 49 QERIQIISNAQNKIYKLHQVKNEITSMPKT-FAYINNALKN--NSKLTPTEMQAEQYYLQ 105
Q + Q+IS AQ+ + N +S+PK + Y+ A N+ TPT ++ L
Sbjct: 307 QNQKQVISYAQD-------IFNLFSSIPKDQYRYLEKAYLKIPNAGKTPTNPYRQEVNLN 359
Query: 106 STFQNIEKIVMLSGG-VSSNPQLVQALEKMQEPITNPLEFEENLRNLEVQFAQ------- 157
Q I+ V G V + + + + ++ T + N +NL + ++
Sbjct: 360 QEIQTIQNNVSYYGNRVDAALSVAKDVYNLKSNQTEIVTTYNNAKNLSQEISKLPYNQVN 419
Query: 158 ---------SQN-------------RMLSSLSSQIAAISNS-LNALDPNSYSKNISSMYG 194
QN S+LS +AA+SN+ + S N ++ G
Sbjct: 420 TKDIITLPYDQNAPAAGQYNYQINPEQQSNLSQALAAMSNNPFKKVGMISSQNNNGALNG 479
Query: 195 VSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNF 254
+ + VGYK FF + K GLRYY F+DY N G++ + F + YG G D L NF
Sbjct: 480 LGVQVGYKQFFGESKRWGLRYYGFFDY---NHGYIKSSFFN-SSSDIWTYGGGSDLLVNF 535
Query: 255 IDNA--KKHS--SVGFYLGFALAGSSWVGSGLSMWVSQTDFINNYLTGYQAKMHTSFFQI 310
I+++ +K++ SVG + G LAG++W+ S +++ T F N Y AK++ S FQ
Sbjct: 536 INDSITRKNNKLSVGLFGGIQLAGTTWLN---SQYMNLTAFNN----PYSAKVNASNFQF 588
Query: 311 PLNFGVRVNV----------NRHNGFEMGLKIPLAMNSFYETHGKGLNTSLFFKRLVMFN 360
N G+R N+ + +G E+G+KIP ++Y L T L ++RL
Sbjct: 589 LFNLGLRTNLATAKKKDSERSAQHGVELGIKIPTINTNYYSF----LGTKLEYRRLYSVY 644
Query: 361 VSYVYSF 367
++YV+++
Sbjct: 645 LNYVFAY 651
Score = 32.0 bits (71), Expect = 0.026
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 1 MQKALLHSSFFLPLFLSFCIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQIISNAQN 60
M+K +L S L L S AE+NG + S G Y I AV+ + + N
Sbjct: 1 MKKTIL-LSLSLSLASSLLHAEDNGFFVSAG--YQIGEAVQM------VKNTGELKNLNE 51
Query: 61 KIYKLHQVKNEITSMPKTFAYINNALKNNSKLTPTEMQAEQYYLQST 107
K +L Q N++ S+ ++ NN NS L + Y +T
Sbjct: 52 KYEQLSQYLNQVASLKQSIQNANNIELVNSSLNYLKSFTNNNYNSTT 98
>ref|NP_222743.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 690
Score = 104 bits (259), Expect = 4e-24
Identities = 87/274 (31%), Positives = 134/274 (48%), Gaps = 52/274 (18%)
Query: 117 LSGGVSSNPQLVQALEKMQEPITNPLEFEENLRNLEVQFAQSQNRMLSSLSSQIAAISNS 176
++ +SS P Q+L+ + TNP Q Q + S++ SQ+ + S
Sbjct: 446 ITAAISSLPD-AQSLQNVVSKKTNPNS---------PQGIQDNYYIDSNIHSQVQSRSQE 495
Query: 177 LNALDPNSYSK---------NISSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYT-NF 226
L + N + + N +M G+ VGYK FF K K G RYY F DY +T N
Sbjct: 496 LGS---NPFRRAGLIAASTTNNGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNK 552
Query: 227 GFVGNGFDGLGKMNNHLYGLGIDYLYNFI-DNAKKHSSVGF--YLGFALAGSSWVGSGLS 283
N + YG+G D L NFI D A KH+ + F + G ALAG+SW+ S
Sbjct: 553 SQFFNASSDV-----WTYGVGSDLLVNFINDKATKHNKISFGAFGGIALAGTSWLN---S 604
Query: 284 MWVSQTDFINNYLTGYQAKMHTSFFQIPLNFGVRVNVNR----------HNGFEMGLKIP 333
+V+ + +NNY Y+AK++T+ FQ N G+R+N+ R +G E+G KIP
Sbjct: 605 QYVNLAN-VNNY---YKAKINTANFQFLFNLGLRMNLARKKHRATDNAAQHGIELGTKIP 660
Query: 334 LAMNSFYETHGKGLNTSLFFKRLVMFNVSYVYSF 367
++Y L T+L ++RL ++YV+++
Sbjct: 661 TINTNYYSL----LGTTLQYRRLYSVYLNYVFAY 690
Score = 24.6 bits (52), Expect = 4.1
Identities = 21/78 (26%), Positives = 34/78 (42%), Gaps = 8/78 (10%)
Query: 14 LFLSFCIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQIISNAQNKIYKL---HQVKN 70
L +S AE+NG + S G++ E N + IQ +S++ ++ L + V N
Sbjct: 13 LLVSALSAEDNGFFVSAGYQIG-----ESAQMVKNTKGIQDLSDSYERLNNLLTNYSVLN 67
Query: 71 EITSMPKTFAYINNALKN 88
+ INNA N
Sbjct: 68 ALIRQSADPNAINNARGN 85
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 101 bits (251), Expect = 3e-23
Identities = 78/253 (30%), Positives = 120/253 (46%), Gaps = 50/253 (19%)
Query: 145 EENLRNLEVQFAQSQNRMLSSLSSQIAAISNSLNA-LDPNSYSK--------NISSMYGV 195
EE L +L+ N+ L Q ++N+L L N + + N +M G+
Sbjct: 411 EETLTSLKASTTDFNNQTTPQLD-QAQTLANTLTQELGNNPFKRVGIIGSQTNNGAMNGL 469
Query: 196 SLSVGYKHFFTKKKNQGLRYYLFYDYGYT--NFGFVGNGFDGLGKMNNHLYGLGIDYLYN 253
+ GYK FF +K+ GLRYY F+DY +T F + D L YG+G D L+N
Sbjct: 470 GVQAGYKQFFGQKRRWGLRYYGFFDYNHTYIKSSFFNSSSDVL------TYGVGSDLLFN 523
Query: 254 FIDNAKKH-------SSVGFYLGFALAGSSWVGSGLSMWVSQTDFIN--NYLTGYQAKMH 304
FI++ + SVG + G ALAG+SW+ S F+N Y AK++
Sbjct: 524 FINDKNTNFLGKNNKISVGLFGGIALAGTSWLNS---------QFVNLKTISNVYSAKVN 574
Query: 305 TSFFQIPLNFGVRVNVNR----------HNGFEMGLKIPLAMNSFYETHGKGLNTSLFFK 354
T+ FQ N G+R N+ R +G E+G+KIP ++Y L T L ++
Sbjct: 575 TANFQFLFNLGLRTNLARPKKKDSDHSAQHGMELGVKIPTINTNYYSY----LGTKLEYR 630
Query: 355 RLVMFNVSYVYSF 367
RL ++YV+++
Sbjct: 631 RLYSVYLNYVFAY 643
Score = 32.7 bits (73), Expect = 0.015
Identities = 26/78 (33%), Positives = 39/78 (49%), Gaps = 7/78 (8%)
Query: 12 LPLFLSFCIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQIISNAQNKIYKLHQVKNE 71
L L S AE+NG + SVG Y I AV+ N +++Q +S+ ++ KL + N+
Sbjct: 12 LTLAASLLHAEDNGVFLSVG--YQIGEAVQ---KVKNADKVQKLSDVYEQLSKL--LAND 64
Query: 72 ITSMPKTFAYINNALKNN 89
+ KT A N NN
Sbjct: 65 NGTSSKTSAQAINQAVNN 82
>ref|NP_223882.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 703
Score = 100 bits (250), Expect = 5e-23
Identities = 101/389 (25%), Positives = 165/389 (41%), Gaps = 83/389 (21%)
Query: 44 NPFLNQERIQ-IISNAQNKIYKLHQVKNEITSMPKT-FAYINNAL-------------KN 88
NP+ + + ++ NAQ + L+Q + + + K A++N++L N
Sbjct: 333 NPYTDASFAESMLKNAQAQAEILNQAEQVVKNFEKIPTAFVNDSLGVCYEVQGGERRGTN 392
Query: 89 NSKLTPTEMQAEQYYLQSTFQNIEKIVMLSGGVSSNPQLVQALEKMQEPITNPLEFEENL 148
+ T A Y+ T N++ + G + Q +Q E + + + N L
Sbjct: 393 PGQTTSNTWGAGCAYVGQTITNLKNSIAHFG---TQEQQIQQAENIADTLVNFKSRYSEL 449
Query: 149 RNL--EVQFAQSQNRMLSSLSSQIAAISNSLNA--------LDPNSYSK----------- 187
N + A S SL + ++ +N + L+ NSY++
Sbjct: 450 GNTYNSITTALSNIPNAQSLQNAVSKKNNPYSPQGIDTNYYLNQNSYNQIQTINQELGRN 509
Query: 188 ------------NISSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDG 235
N +M G+ + VGYK FF +K+ G RYY F+DY N F+ + F
Sbjct: 510 PFRKVGIVSSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDY---NHAFIKSSFFN 566
Query: 236 LGKMNNHLYGLGIDYLYNFIDN-------AKKHSSVGFYLGFALAGSSWVGSGLSMWVSQ 288
+ YG G D LYNFI++ SVG + G ALAG+SW+ S +
Sbjct: 567 -SASDVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLAT- 624
Query: 289 TDFINNYLTGYQAKMHTSFFQIPLNFGVRVNVNR----------HNGFEMGLKIPLAMNS 338
+NN Y AKM+ + FQ N GVR+N+ R +G E+GLKIP +
Sbjct: 625 ---MNNV---YNAKMNVANFQFLFNMGVRMNLARPKKKDSDHAAQHGIELGLKIPTINTN 678
Query: 339 FYETHGKGLNTSLFFKRLVMFNVSYVYSF 367
+Y G L ++RL ++YV+++
Sbjct: 679 YYSFMG----AELKYRRLYSVYLNYVFAY 703
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 100 bits (250), Expect = 5e-23
Identities = 80/300 (26%), Positives = 129/300 (42%), Gaps = 38/300 (12%)
Query: 75 MPKTFAYINNALKNNSKLTPTEMQAEQYYLQSTFQNIEKIVMLSGGVSSNPQLVQALEKM 134
+P +N A +LTP + Q EQ + + + + + Q+ + L
Sbjct: 425 LPNYGGQLNGANNQTPQLTPQQAQQEQKVIMNQLEQ-------ATNAPTPAQINRILANP 477
Query: 135 QEPITNPLEFEENLRNLEVQFAQSQNRMLSSLSSQIAAISNSLNALDPNSYSKNISSMYG 194
P L R+ V + + +Q+ + + N L+ NS S N M G
Sbjct: 478 YSPTAKTLMAYGLYRSKAVIGGVIDE--MQTKVNQVYQMGFARNFLEHNSNSNN---MNG 532
Query: 195 VSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNF 254
+ +GYK FF KK+ GLRYY FYD+GY FG + L K YG G D+LYN
Sbjct: 533 FGVKMGYKQFFGKKRMFGLRYYGFYDFGYAQFGTESS----LVKATLSSYGAGTDFLYNV 588
Query: 255 IDNAK--KHSSVGFYLGFALAGSSWVGSGLSMWVSQTDFINNYLTGYQAKMHTSFFQIPL 312
+ + +GF+ G LAG +W +T+F++ + G K + FQ
Sbjct: 589 FTRKRGTEAIDIGFFAGIQLAGQTW----------KTNFLDQ-VDGNHLKPKDTSFQFLF 637
Query: 313 NFGVRVNVNR---------HNGFEMGLKIPLAMNSFYETHGKGLNTSLFFKRLVMFNVSY 363
+ G+R N ++ G E GLKIP+ +++Y++ G F V +N+ +
Sbjct: 638 DLGIRTNFSKIAHQKRSRFSQGIEFGLKIPVLYHTYYQSEGVTAKYRRDFSFYVGYNIGF 697
Score = 25.0 bits (53), Expect = 3.2
Identities = 18/73 (24%), Positives = 36/73 (48%), Gaps = 9/73 (12%)
Query: 2 QKALLHSSFFLPLFLSFCIAEENGAYASVGFEYSIS---------HAVEHNNPFLNQERI 52
+K L++SS FL+ +AE++G + V ++ S++ +A + + ++ Q I
Sbjct: 8 KKWLIYSSLLPLFFLNPLMAEDDGFFMGVSYQTSLAVQRVDNSGLNASQDASTYIRQNAI 67
Query: 53 QIISNAQNKIYKL 65
+ S A Y L
Sbjct: 68 ALESAAVPLAYYL 80
>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 638
Score = 100 bits (250), Expect = 5e-23
Identities = 72/219 (32%), Positives = 118/219 (53%), Gaps = 30/219 (13%)
Query: 164 SSLSSQIAAISNS-LNALDPNSYSKNISSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYG 222
S+L+ +AA+SN+ + S N ++ G+ + VGYK FF + K GLRYY F+DY
Sbjct: 435 SNLNQALAAMSNNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDY- 493
Query: 223 YTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNA--KKHS--SVGFYLGFALAGSSWV 278
N G++ + F + YG G D L NFI+++ +K++ SVG + G LAG++W+
Sbjct: 494 --NHGYIKSSFFN-SSSDIWTYGGGSDLLVNFINDSITRKNNKLSVGLFGGIQLAGTTWL 550
Query: 279 GSGLSMWVSQTDFINNYLTGYQAKMHTSFFQIPLNFGVRVNV----------NRHNGFEM 328
S +++ T F N Y AK++ S FQ N G+R N+ + +G E+
Sbjct: 551 N---SQYMNLTAFNN----PYSAKVNASNFQFLFNLGLRTNLATAKKKDSERSAQHGVEL 603
Query: 329 GLKIPLAMNSFYETHGKGLNTSLFFKRLVMFNVSYVYSF 367
G+KIP ++Y L T L ++RL ++YV+++
Sbjct: 604 GIKIPTINTNYYSF----LGTKLEYRRLYSVYLNYVFAY 638
Score = 29.3 bits (64), Expect = 0.17
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 1 MQKALLHSSFFLPLFLSFCIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQIISNAQN 60
M+K +L S L L S AE+NG + S G Y I AV+ + + N +
Sbjct: 1 MKKTIL-LSLSLSLASSLLHAEDNGFFVSAG--YQIGEAVQ------MVKNTGELKNLND 51
Query: 61 KIYKLHQVKNEITSMPKTFAYINNALKNNSKLT 93
K +L Q ++ S+ K+ NN N+ L+
Sbjct: 52 KYEQLSQSLAQLASLKKSIQTANNIQAVNNALS 84
>ref|NP_224080.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 248
Score = 99.8 bits (247), Expect = 1e-22
Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 39/229 (17%)
Query: 169 QIAAISNSLNALDPNSYSKNISSM---YGVSLSVGYKHFFTKKKNQGLRYYLFYDYG--- 222
Q++ I N ++ N K + G VGYK FF KKK G+RYY F+DY
Sbjct: 29 QVSMIQNQTKMVNDNGLQKPLIKFPPYAGPGFEVGYKQFFGKKKWFGMRYYGFFDYAHNR 88
Query: 223 ----------------YTNFGFVGN------GFDGLGKMNNHLYGLGIDYLYNFIDNAKK 260
Y +F F GN + G +N YG+G+D L+NF++ K+
Sbjct: 89 FGVMKKGIPVGESGFIYNSFSFGGNTLTERDSYQGQYYINLFTYGVGLDTLWNFVN--KE 146
Query: 261 HSSVGFYLGFALAGSSWVGSGLSMWVSQTDFINNYLTGYQAKMHT-SFFQIPLNFGVRVN 319
+ GF +G LAG SW S + I +Y+ + ++ + FQ FGVR +
Sbjct: 147 NMVFGFVVGIQLAGDSWA-------TSISKEIGSYVKHHSNSSYSPANFQFLWKFGVRTH 199
Query: 320 VNRHNGFEMGLKIP-LAMNSFYETHGKGLNTSLFFKRLVMFNVSYVYSF 367
+ HN E+G+K+P + F+ T+ KG +R+ F +SY+ F
Sbjct: 200 IAIHNSLELGIKVPTITHRLFFITNEKGYTLQADVRRVYAFQISYLRDF 248
>ref|NP_223551.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 744
Score = 99.8 bits (247), Expect = 1e-22
Identities = 69/201 (34%), Positives = 100/201 (49%), Gaps = 32/201 (15%)
Query: 184 SYSKNISSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMNNHL 243
S N +M G+ + VGYK FF +K+ G RYY F+DY N F+ + F +
Sbjct: 559 SSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDY---NHAFIKSSFFN-SASDVWT 614
Query: 244 YGLGIDYLYNFIDN-------AKKHSSVGFYLGFALAGSSWVGSGLSMWVSQTDFINNYL 296
YG G D LYNFI++ SVG + G ALAG+SW+ S + +NN
Sbjct: 615 YGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLAT----MNNV- 669
Query: 297 TGYQAKMHTSFFQIPLNFGVRVNVNR----------HNGFEMGLKIPLAMNSFYETHGKG 346
Y AKM+ + FQ N GVR+N+ R +G E+GLKIP ++Y G
Sbjct: 670 --YNAKMNVANFQFLFNMGVRMNLARPKKKDSDHAAQHGIELGLKIPTINTNYYSFMG-- 725
Query: 347 LNTSLFFKRLVMFNVSYVYSF 367
L ++RL ++YV+++
Sbjct: 726 --AELKYRRLYSVYLNYVFAY 744
Score = 23.5 bits (49), Expect = 9.2
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 14 LFLSFCIAEENGAYASVGFEYSISHAVEHNNPFLN--QERIQIISNAQNKIYKLH 66
L +S AE++G Y SVG++ + + N + +R + ++N N+ L+
Sbjct: 13 LLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQDLSDRYESLNNLLNRYSTLN 67
>ref|NP_223332.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 270
Score = 99.8 bits (247), Expect = 1e-22
Identities = 66/196 (33%), Positives = 102/196 (51%), Gaps = 28/196 (14%)
Query: 189 ISSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFD--GLGKMNN----- 241
++ M G+ L+VGYK FF +K+ G RYY F DYG+ FG D G+ K+N
Sbjct: 86 LAVMQGLGLTVGYKQFFGEKRWFGARYYGFMDYGHAVFGANALTSDNGGVCKLNEPCATK 145
Query: 242 ----------HLYGLGIDYLYNFIDNAKKHSSVGFYLGFALAGSSWVGSGLSMWVSQTDF 291
YG+GID LYN I+ K+ +S GF+ G +AG+SW + + +++ +
Sbjct: 146 VGTMGNLSDMFTYGVGIDTLYNVIN--KEDASFGFFFGAQIAGNSWGNTTGAFLETKSPY 203
Query: 292 INNYLTGYQAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAMNSFYETHGKGLNTSL 351
+ T Y + + FQ N G+R ++ +H F+ G+KIP +N +Y HG N S
Sbjct: 204 KH---TSY--SLDPAIFQFLFNLGIRTHIGQHQEFDFGVKIP-TINVYYFNHG---NLSF 254
Query: 352 FFKRLVMFNVSYVYSF 367
++R V Y Y+F
Sbjct: 255 TYRRQYSLYVGYRYNF 270
>ref|NP_224112.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 388
Score = 95.5 bits (236), Expect = 2e-21
Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 42/190 (22%)
Query: 192 MYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNF------GFVGNGFDGLGKMNNHLYG 245
MYG+ + GYKHF KK+ GLRYY F+DYG+TNF + + K + + YG
Sbjct: 153 MYGLGVMTGYKHFVGKKRWFGLRYYGFFDYGHTNFSNSRAANAISPFYLSDQKADMYTYG 212
Query: 246 LGIDYLYNFIDNAKKHSSVGFYLGFALAGSSWVGSGLS------MWVSQTD---FINN-- 294
G D L+N ID K ++ GF++G AG++W + + ++ TD ++ N
Sbjct: 213 FGTDMLFNVIDKPK--ATAGFFVGVNFAGNTWTNNRVGYFKDGYVYGVNTDADAYMTNAD 270
Query: 295 ----------------------YLTG-YQAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLK 331
Y TG AK++ + FQ +N G+R N+ H+G E G+K
Sbjct: 271 GTITCGDTTPASCNVGINPNSVYTTGKLNAKVNHTIFQFLVNVGIRTNIFEHHGIEFGIK 330
Query: 332 IPLAMNSFYE 341
IP N F++
Sbjct: 331 IPTLPNYFFK 340
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 95.1 bits (235), Expect = 2e-21
Identities = 63/188 (33%), Positives = 98/188 (51%), Gaps = 20/188 (10%)
Query: 183 NSYSKNISSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMNNH 242
NS S N +M GV + +GYK FF K K G+RYY F+DY N+ ++ + F N
Sbjct: 313 NSQSNN-GAMNGVGVQLGYKQFFGKNKFFGIRYYGFFDY---NYAYIKSNFFN-SASNVF 367
Query: 243 LYGLGIDYLYNFIDNAKKHS---SVGFYLGFALAGSSWVGSGLSMWVSQTDFINNYLTGY 299
YG G D L NFI+ + S G + G ALAG++W+ +Q+ + + Y
Sbjct: 368 TYGAGSDLLLNFINGGSDRNRKVSFGIFGGIALAGTTWLN-------NQSANLKITNSAY 420
Query: 300 QAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAMNSFYETHGKGLNTSLFFKRLVMF 359
AK++ + FQ N G+R+ H+G E+G+KIP ++Y G L ++RL
Sbjct: 421 SAKINNTNFQFLFNTGLRLQ-GIHHGIELGVKIPTINTNYYSFMG----AKLAYRRLYSL 475
Query: 360 NVSYVYSF 367
++YV ++
Sbjct: 476 YLNYVLAY 483
Score = 41.6 bits (96), Expect = 3e-05
Identities = 81/379 (21%), Positives = 146/379 (38%), Gaps = 44/379 (11%)
Query: 6 LHSSFFLPLFLSFCIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQIISNAQNKIYKL 65
+ + L L +S AE +G Y SVG Y I A + N IQ +SNA + L
Sbjct: 1 MKKTILLSLMVSSLFAENDGVYMSVG--YQIGEAAQ---MVKNTGEIQKVSNAYENLNNL 55
Query: 66 HQVKNEI-----TSMPKTFAYINNALKNNSKLTPTEMQAEQYYLQSTFQNIEKIVMLSGG 120
NE+ + T I+N K+ S+L T A Q + + +++
Sbjct: 56 LTRYNELKQTASNTDSSTAQAIDNLEKSASRLKTTPNTANQAVSSALSSAVGMWQVIASN 115
Query: 121 VSSNPQLVQALEKMQ---EPITNPLEFEENLRNLEVQFAQ---SQNRMLSSLSSQIAAIS 174
+++N EK++ + + N LE + N +E + Q + ++++L SQ +
Sbjct: 116 LANNSLSSSEYEKLKATSQLLQNTLENKNNNLKIENDYDQLLTQASTIINTLQSQCPGVD 175
Query: 175 NSLNALDPNSYSKNISSMYGVSLSVGYKHFFTKKK-----NQGLRYYLFYDYGYTNFGFV 229
+ S N +++G + + + KK + +TN F
Sbjct: 176 GGNGKPWGINTSGNACAIFGSTFNAINSMIDSAKKAAADARRTAPESPNQQNAFTNADFN 235
Query: 230 GNGFDGLGKMN---NHLYGLGIDYLYNFIDNAKKHSSVGFYLGFALAGSSWVGSGLSMWV 286
N +N ++L G ++ +YN I K +S GF S S S +
Sbjct: 236 KNLNQVSSVINDTISYLKGDNLETIYNTIQ--KTPNSKGFQ-------SLVSRSSYSYSL 286
Query: 287 SQTDFINNYLTGYQAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAMNSFYETHGKG 346
++T + + + T + H F + L +N +NG G+ + L F+ G
Sbjct: 287 NETQY-SQFQTTTKEFGHNPFRSVGL-----INSQSNNGAMNGVGVQLGYKQFF-----G 335
Query: 347 LNTSLFFKRLVMFNVSYVY 365
N + F+ +Y Y
Sbjct: 336 KNKFFGIRYYGFFDYNYAY 354
>ref|NP_223363.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 270
Score = 91.7 bits (226), Expect = 3e-20
Identities = 62/196 (31%), Positives = 91/196 (45%), Gaps = 25/196 (12%)
Query: 191 SMYGVSLSVGYKHFFTKK------KNQGLRYYLFYDYGYTNFG---FVGNGFDGLGKMNN 241
++ G L+VGYK FF K K G R Y +DYG+ + G + N +++
Sbjct: 81 ALNGFGLNVGYKKFFQFKSLDMTSKWFGFRVYGLFDYGHADLGKQVYAPNKI----QLDM 136
Query: 242 HLYGLGIDYLYNFIDNAKKHSSVGFYLGFALAGSSWVGSGLSMWVSQ----------TDF 291
+G+G D L + ID K ++S G + G A+ G++W S + W Q T
Sbjct: 137 VSWGVGSDLLADIID--KDNASFGIFGGVAIGGNTWKSSAANYWKEQIIEAKGPDVCTPT 194
Query: 292 INNYLTGYQAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAMNSFYETHGKGLNTSL 351
N Y T FQ+ LNFGVR N+ +HNG E G+++PL +N F N
Sbjct: 195 YCNPNAPYSTNTSTVAFQVWLNFGVRANIYKHNGVEFGVRVPLLINKFLSAGPNATNLYY 254
Query: 352 FFKRLVMFNVSYVYSF 367
KR + Y Y+F
Sbjct: 255 HLKRDYSLYLGYNYTF 270
>ref|NP_223566.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 520
Score = 91.3 bits (225), Expect = 4e-20
Identities = 95/366 (25%), Positives = 161/366 (43%), Gaps = 54/366 (14%)
Query: 22 EENGAYASVGFEYSISHAVEHNNPFLNQERIQIISNAQNKIYKLHQVKNEITSMPKTF-- 79
E+NG A+ S S A + +Q+ IQ + QN + + + + + F
Sbjct: 189 EKNGT-ATANSTSSTSGATGSDGQTYSQQAIQYLQGQQNILNNAANLLKQDELLLEAFNS 247
Query: 80 ---AYINNALKNNSKLTPTEM----QAEQYYLQSTFQNIEKIVMLSGGVSSNPQLVQALE 132
A I N N++ T Q++ Y + T I + + G++SN A++
Sbjct: 248 AVAANIGNKEFNSAAFTGLVQGIIDQSQLVYNELTKNTISGSAVNNAGINSNQ--ANAVQ 305
Query: 133 KMQEPITNPLEFEENLRNLEVQFAQSQNRMLSSLSSQIAAISNSLNALDPNSYSKNISSM 192
+ N L N++V + +++L++Q+ ++ NS + NI +
Sbjct: 306 GRASQLPNALY------NVQVTLDK-----INALNNQVRSMPYLPQFRAGNSRATNI--L 352
Query: 193 YGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLY 252
G VGYK FF KK+N GLRYY F+ Y + GF + + YG+G D LY
Sbjct: 353 NGFYTKVGYKQFFGKKRNIGLRYYGFFSYNGASVGFRST----QNNVGLYTYGVGTDVLY 408
Query: 253 NFIDNAKKHSSV--GFYLGFALAGSSWVGSGLSMWVSQTDFINNYLTGYQAKMHTSFFQI 310
N + ++ SV GF+ G LAG ++ Q+ ++ K++ + FQ
Sbjct: 409 NIFSRSYQNRSVDMGFFSGIQLAGETF----------QSTLRDDPNVKLHGKINNTHFQF 458
Query: 311 PLNFGVRVNV-------NRHN--GFEMGLKIPLAMNSFYETHGKGLNTSLFFKRLVMFNV 361
+FG+R+N NRHN E G+ +P N++Y++ G T++ + R
Sbjct: 459 LFDFGMRMNFGKLDGKSNRHNQHTVEFGVVVPTIYNTYYKSAG----TTVKYFRPYSVYW 514
Query: 362 SYVYSF 367
SY YSF
Sbjct: 515 SYGYSF 520
>ref|NP_222838.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 286
Score = 86.3 bits (212), Expect = 1e-18
Identities = 57/184 (30%), Positives = 84/184 (44%), Gaps = 19/184 (10%)
Query: 194 GVSLSVGYKHFFTKKKNQGLRYYLFYDYG---YTNFGFVGNGFDGLGKMNNHL---YGLG 247
G VGYKHFF K G+RYY F+D+ Y + + G K + YG G
Sbjct: 112 GFGFVVGYKHFFKKAPQFGMRYYGFFDFASSYYKYYTYNDYGMRDARKGSQSFMFGYGAG 171
Query: 248 IDYLYNFIDNAKKHSSVGFYLGFALAGSSWVGSGLSMWVSQTDFINNYLTGYQAKMHTSF 307
D L+N +++ GF+LG A+ G+SW + + + Y+ H S
Sbjct: 172 TDVLFNPAIFNRENLHFGFFLGVAIGGTSWGPTNY--------YFKDLAEEYRGSFHPSN 223
Query: 308 FQIPLNFGVRVNVNRHNGFEMGLKIPLAMNSFYETHG----KGLNTSLFFKRLVMFNVSY 363
FQ+ +N G+R+ +H GFE+GLKI N++Y +G F R F Y
Sbjct: 224 FQVLVNGGIRLG-TKHQGFEIGLKIQTIRNNYYTASADNVPEGTTYRFTFHRPYAFYWRY 282
Query: 364 VYSF 367
+ SF
Sbjct: 283 IVSF 286
>ref|NP_222959.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 83.2 bits (204), Expect = 1e-17
Identities = 103/464 (22%), Positives = 176/464 (37%), Gaps = 113/464 (24%)
Query: 1 MQKALLHSSFFLPLFLSFCIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQIISN--- 57
++K LL ++ L LS +AE++G Y VG Y I A ++ N + R +I +
Sbjct: 24 LKKGLLKTALLFSLPLSVALAEDDGFYMGVG--YQIGGAQQNINNKGSTLRNNVIDDFRQ 81
Query: 58 ---------------AQNKIYKLHQVKNEITSMPKTFAYINNALKNNSKLTPT------- 95
+ L + N+I + T N L K+ P
Sbjct: 82 VGVGMAGGNGLLALATNTTMDALLGIGNQIVNTNTTVGNNNAELTQFKKILPQIEQRFET 141
Query: 96 -----EMQAEQYYLQSTFQNI-----------------------------------EKIV 115
+QA Q YL + N+ E +
Sbjct: 142 NKNAYSVQALQVYLSNVLYNLVNNSNNGSNNGVVPEYVGIIKVLYGSQNEFSLLATESVA 201
Query: 116 MLSG----GVSSNPQLVQALEKMQEPITNPL-----EFEENLRNLEVQFAQSQNRMLSSL 166
+L+ + SN ++ L + + + ENL+N + + ++
Sbjct: 202 LLNALTRVNLDSNSVFLKGLLAQMQLFNDTSSAKLGQIAENLKNGGA--GAMLQKDVKTI 259
Query: 167 SSQIAAISNSLNAL--------DP--NSYSKNISSMYGV----SLSVGYKHFFTKKKNQG 212
S +IA +L L +P + SS +GV + VGYK FF KKN G
Sbjct: 260 SDRIATYQENLKQLGGMLKNYDEPYLPQFGPGTSSQHGVINGFGIQVGYKQFFGSKKNIG 319
Query: 213 LRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNAKKHSS--VGFYLGF 270
LRYY F+DYG+T G + + K N YG G D+L+N S VG + G
Sbjct: 320 LRYYAFFDYGFTQLGSLNSAV----KANIFTYGAGTDFLWNIFRRVFSDQSLNVGVFGGI 375
Query: 271 ALAGSSW-------VGSGLSMWVSQTDFINNYLTGYQAKMHTSFFQIPLNFGVRVNVNRH 323
+AG++W + + + + T+F + G +A ++ + L+ +
Sbjct: 376 QIAGNTWDSSLRGQIENSFKEYPTPTNFQFLFNLGLRAHFASTMHRRFLSASQSI----Q 431
Query: 324 NGFEMGLKIPLAMNSFYETHGKGLNTSLFFKRLVMFNVSYVYSF 367
+G E G+KIP + + +G ++ ++RL F ++Y F
Sbjct: 432 HGMEFGVKIPAINQRYLKANGADVD----YRRLYAFYINYTIGF 471
>ref|NP_223567.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 527
Score = 73.2 bits (178), Expect = 1e-14
Identities = 60/225 (26%), Positives = 107/225 (46%), Gaps = 39/225 (17%)
Query: 161 RMLSSLSSQIAAISNSLNALDPNSY--------SKNISSMYGVSLSVGYKHFFTKKKNQG 212
++L++ ++ +A ++ N L N + S +++ G +GYK FF + KN G
Sbjct: 322 QLLNNTTNTLAKVTALNNELKANPWLGNFAAGNSSQVNAFNGFITKIGYKQFFGENKNVG 381
Query: 213 LRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNA--KKHSSVGFYLGF 270
LRYY F+ Y N VGNG ++N YG+G D LYN + + + GF+ G
Sbjct: 382 LRYYGFFSY---NGAGVGNG-PTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNAGFFGGI 437
Query: 271 ALAGSSWVGS-----GLSMWVSQTDFINNYLTGYQAKMHTSFFQIPLNFGV-RVNVNRHN 324
LAG +++ + L+ + T F + G + +NFG+ + ++ HN
Sbjct: 438 QLAGDTYISTLRNSPQLASRPTATKFQFLFDVG-----------LRMNFGILKKDLKSHN 486
Query: 325 --GFEMGLKIPLAMNSFYETHGKGLNTSLFFKRLVMFNVSYVYSF 367
E+G++IP N++Y+ G + K ++V +VY +
Sbjct: 487 QHSIEIGVQIPTIYNTYYKAGGAEV------KYFRPYSVYWVYGY 525
>ref|NP_223027.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 245
Score = 72.0 bits (175), Expect = 2e-14
Identities = 59/214 (27%), Positives = 96/214 (44%), Gaps = 29/214 (13%)
Query: 161 RMLSSLSSQIAAISNSLNALDPNSYSKNISSM--YGVSLSVGYKHFFTKKKNQGLRYYLF 218
R ++S + + S+N++ K +++M G+ L +GY HFF K GLRY+ F
Sbjct: 54 REVTSYQTGYTNVMTSINSV------KKLTNMGSNGIGLVMGYNHFFHPDKVLGLRYFAF 107
Query: 219 YDYGYTNFGFVGNGFDGLGKMNNHL-YGLGIDYLYNFIDNAKKHS----SVGFYLGFALA 273
D+ + + G NN + YG+G+D ++NF + +G + G A+A
Sbjct: 108 LDWQGYGMRYPKGYYGG----NNMITYGVGVDAIWNFFQGSFYQDDIGVDIGVFGGIAIA 163
Query: 274 GSSWVGSGLSMWVSQTDFINNYLTGYQAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIP 333
G+SW ++ +T A +TS FQ NFG + + FE+G K P
Sbjct: 164 GNSW-------YIGNKGQELLGITNSSAVDNTS-FQFLFNFGFKALFVDEHEFEIGFKFP 215
Query: 334 LAMNSFYETHGKGLNTSLFFKRLVMFNVSYVYSF 367
N +Y T + +R+ F V Y Y F
Sbjct: 216 TLNNKYYTTDA----LKVQMRRVFAFYVGYNYHF 245
>ref|NP_223450.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 278
Score = 65.1 bits (157), Expect = 3e-12
Identities = 53/194 (27%), Positives = 80/194 (40%), Gaps = 40/194 (20%)
Query: 195 VSLSVGYKHFFTKKKNQGLRYYLFYDYGY----TNFGFVGNGFDGLGK------------ 238
VSL GYK FF KK++ G R+Y+ DY Y N G +G+ +
Sbjct: 104 VSLIYGYKQFFPKKEHYGFRFYVSLDYAYGFFLKNKGALGDSLRASSQIPKSYREKLQRK 163
Query: 239 ---MNNHLYGLGIDYLYNFIDNAKKHSSVGFYLGFALAGSSWVGSGLSMWVSQTDFINNY 295
+N YG+G D+LY K + LG G +W D +N Y
Sbjct: 164 ETFINAIFYGVGADFLY-------KRAFGTLILGVNFVGETWFYETKIFKQWAKDSLNTY 216
Query: 296 LTGYQAKMHTSFFQIPLNFGVRVNVNRHNGF--EMGLKIPLAMNSFYETHGKGLNTSLFF 353
+ FQ+ LN G R +R+ + E G +IP +N +++T +L F
Sbjct: 217 --------RPNMFQVMLNVGYRYRFSRYKNWAIEFGARIPFLINDYFKTP----LYTLHF 264
Query: 354 KRLVMFNVSYVYSF 367
KR + ++ Y F
Sbjct: 265 KRNISVYLTSTYDF 278
Score = 28.1 bits (61), Expect = 0.38
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 13/52 (25%)
Query: 175 NSLNALDPNSYSKNISSMYGVSLSVGYKHFFTKKKNQGLRY-----YLFYDY 221
+SLN PN M+ V L+VGY++ F++ KN + + +L DY
Sbjct: 211 DSLNTYRPN--------MFQVMLNVGYRYRFSRYKNWAIEFGARIPFLINDY 254
>ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 242
Score = 60.8 bits (146), Expect = 5e-11
Identities = 59/239 (24%), Positives = 103/239 (42%), Gaps = 55/239 (23%)
Query: 155 FAQSQNRMLSSLSSQIAAISNSLNALDPNSYSKNISSMYGVSLSVGYKHFFTKKKNQGLR 214
+ Q Q +M + ++SQ A + ++ D +GY+ FF +K+ GLR
Sbjct: 33 YLQGQAQMHADINSQKQATNATIKGFDA---------------LLGYQFFF--EKHFGLR 75
Query: 215 YYLFYDYGYTNFGFVGN---------------GFDGLGKMNNHL-----------YGLGI 248
Y F+DY + N + N G + ++ N YG +
Sbjct: 76 LYGFFDYAHANSIKLKNPNYNSEAAQVASQILGKQEINRLTNIADPRTFEPNMLTYGGAM 135
Query: 249 DYLYNFIDNAKKHSSVGFYLGFALAGSSWVGSGLSMWVSQTDFINNYLTGYQAKMHTSFF 308
D + N I+N S+G + G LAG+SW+ + S + + L +A + F
Sbjct: 136 DVMVNVINNGIM--SLGAFGGIQLAGNSWLMATPSF---EGILVEQALVSKKA----TSF 186
Query: 309 QIPLNFGVRVNVNRHNGFEMGLKIPLAMNSFYETHGKGLNTSLFFKRLVMFNVSYVYSF 367
Q N G R+ + +H+ E G+K P+ + Y T N + F+R+ + V+YV++F
Sbjct: 187 QFLFNVGARLRILKHSSIEAGVKFPMLKKNPYIT---AKNLDIGFRRVYSWYVNYVFTF 242
Score = 25.4 bits (54), Expect = 2.4
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 32 FEYSISHAVEHNNPFLNQERIQIISNAQNKIYKLHQVKNEITSM--PKTF 79
F+Y+ +++++ NP N E Q+ S K Q N +T++ P+TF
Sbjct: 80 FDYAHANSIKLKNPNYNSEAAQVASQILGK-----QEINRLTNIADPRTF 124
>ref|NP_223299.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 307
Score = 56.2 bits (134), Expect = 1e-09
Identities = 65/271 (23%), Positives = 106/271 (38%), Gaps = 81/271 (29%)
Query: 157 QSQNRMLSSLSSQIAAISNSLNALDPNSYSKNISSMYGVS---------LSVGYKHFFTK 207
Q+ N +SL AI + NAL+ S I++ + + LS+GYK+F K
Sbjct: 54 QAINNAKNSLFPNTKAIRDVQNALNAVKDSNKIANRFAGNGGSGGIFNELSLGYKYFLGK 113
Query: 208 KKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNF------------- 254
K+ G R+ LF+ Y G VG+ G G + YG D L N+
Sbjct: 114 KRIIGFRHSLFFGY---QLGGVGS-VPGSGLIAFLPYGFNTDLLINWTNDKRASQEYVER 169
Query: 255 ---------------------IDNAKKH---SSVGFYLGFALAGSSWVGSGLSMWVSQTD 290
+ A +H S G +G L S+W
Sbjct: 170 RVKGLSIFYKDMTGRTLDADTLKRASRHIIRKSSGLVIGMELGASTW------------- 216
Query: 291 FINNYLTGYQAKMHTSFFQIPLNFGVRVNVNRH-------------NGFEMGLKIP-LAM 336
F +N LT + + FQ+ FGVR + + + + E+G+K+P +
Sbjct: 217 FASNNLTPFNQVKSRTIFQLQGKFGVRFSSDEYDIDRYGDENYLGGSSVELGVKVPAFKV 276
Query: 337 NSFYETHGKGLNTSLFFKRLVMFNVSYVYSF 367
N + + +G L+ +KR+V ++Y Y+F
Sbjct: 277 NYYSDDYGDKLD----YKRVVSVYLNYTYNF 303
>ref|NP_223757.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 277
Score = 53.5 bits (127), Expect = 8e-09
Identities = 64/237 (27%), Positives = 99/237 (41%), Gaps = 41/237 (17%)
Query: 153 VQFAQSQNRMLSSLSSQIAAISNSLNALDPNSYSKNISSMYGVSLSVGYKHFFTKKKNQ- 211
+Q S + + S+SL+ + NSY N G+ + VGYK ++ +
Sbjct: 60 IQHNSSNLNLSQRFNKSQIIFSDSLSPVFKNSYVSN-----GLGVQVGYKWVGKHEETKW 114
Query: 212 -GLRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNAKKHSSVGFYLGF 270
G R+ LFYD + +G + + YG +D L N + K + GF LG
Sbjct: 115 FGFRWGLFYDLSASLYGSQESQ-----SIIISTYGTYMDLLLNAYNGDKFFA--GFNLGI 167
Query: 271 ALAGSSWVGSGLSMWVSQTDFINNYLTGYQAKMHTSFFQIPLNFGVRVNVNRHNGFEMGL 330
A AG V LS + + N G K++ + FQ ++ GVR+ N HN F G+
Sbjct: 168 AFAG---VYDRLSDALLYQTLLQNTFGG---KVNLNGFQFLVDLGVRLG-NEHNQFGFGI 220
Query: 331 KIP-LAMNSFYETHG----------------KGLNTSLF---FKRLVMFNVSYVYSF 367
KIP N +Y + G+N+ L+ F+R +Y YSF
Sbjct: 221 KIPTYYFNHYYSMNNISNNSENVLKVLRFLEYGINSLLYQVDFRRNYSVYFNYTYSF 277
>ref|NP_222814.1| putative [Helicobacter pylori J99]
Length = 253
Score = 49.3 bits (116), Expect = 2e-07
Identities = 60/248 (24%), Positives = 99/248 (39%), Gaps = 41/248 (16%)
Query: 121 VSSNPQLVQALEKMQEPITNPLEFEENLRNLEVQFAQSQNRMLSSLSSQIAAISNSLNAL 180
+ N + Q L+K Q+ + LE ++L+ F N ++ S+ ++ + N++
Sbjct: 46 IDKNNEKQQILDKNQQILKRALE-----KSLKFFFIFGYNYSQAAYSTTNQNLTLTANSI 100
Query: 181 DPNSYSKNISSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMN 240
G + + G +HF G R + Y+Y F V + +
Sbjct: 101 -------------GFNTATGLEHFLRNHPKVGFRIFSVYNY----FHSVSLSQPQILMVQ 143
Query: 241 NHLYGLGIDYLYNFIDNAKKHSSVGFYLGFALAGSSWVGSGLSMWVSQTDFINN-YLTGY 299
N YG +D+ + F+D KK YLG AL V D I T
Sbjct: 144 N--YGGALDFSWIFVD--KKTYRFRSYLGIAL----------EQGVLLVDTIKTGSFTTI 189
Query: 300 QAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAMNSFYETHGKGLNTSLFFKRLVMF 359
+ +FFQ PL FG V+ + ++G+++PL N FY + N FK
Sbjct: 190 IPRTKKTFFQAPLRFGFIVDFIGYLSLQLGIEMPLVRNVFYTYN----NHQERFKPRFNA 245
Query: 360 NVSYVYSF 367
N+S + SF
Sbjct: 246 NLSLIVSF 253
>ref|NP_223751.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 220
Score = 47.0 bits (110), Expect = 8e-07
Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 26/225 (11%)
Query: 143 EFEENLRNLEVQFAQSQNRMLSSLSSQIAAISNSLNALDPNSYSKNISSMYGVSLSVGYK 202
E E + ++ + +FA +N + Q++AI+ S + + + +GV L +
Sbjct: 22 EAELDEKSKKPKFAD-RNTFYLGVGYQLSAINTSFSTSSIDKSYFMTGNGFGVVLGGKFV 80
Query: 203 HFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNAKKHS 262
++ G RY LFYD +++ K YGL L++ ++ K
Sbjct: 81 AKTQAVEHVGFRYGLFYDQTFSSH-----------KSYISTYGLEFSGLWDAFNSPKMF- 128
Query: 263 SVGFYLGFALAGSSWVGSGLSMWVSQTDFINNYLTGYQAKMHTSFFQIPLNFGVRVNVNR 322
+G G +AG++++ G ++ + Y K S FQ+ + G R
Sbjct: 129 -LGLEFGLGIAGATYMPGGA---------MHGIIAQYLGK-ENSLFQLLVKVGFRFGFF- 176
Query: 323 HNGFEMGLKIPLAMNSFYETHGKGLNTSLFFKRLVMFNVSYVYSF 367
HN GLK P+ N E GL+ + ++RL + +Y+Y+F
Sbjct: 177 HNEITFGLKFPVIPNKKTEIVD-GLSATTLWQRLPVAYFNYIYNF 220
>ref|NP_223078.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 200
Score = 42.0 bits (97), Expect = 3e-05
Identities = 50/187 (26%), Positives = 76/187 (39%), Gaps = 42/187 (22%)
Query: 192 MYGVSLSVGYKHFFTKKKNQGL--RYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGID 249
+ G S+ GY+ KN RYY F DYG F D + N YG+G D
Sbjct: 45 LQGASILQGYE---VNPKNDWAYSRYYFFIDYGNVLF-----NNDSTLQANMFTYGVGGD 96
Query: 250 YLYNFIDNAKKHSSVGFYLGFALAGSSWVGSG------LSMWVSQTDFINNYLTGYQAKM 303
++ + N + F+ G LA ++W+ + ++ W S DF
Sbjct: 97 FMVAYAKNPINRWA--FFFGLQLAANTWILNNKVKDLVVNTWDSLKDF----------NF 144
Query: 304 HTSFFQIPLNFGV--RVNVNRHN-GFEMGLKIPLAMNSFYETHGKGLNTSLFFKRLVMFN 360
H ++F+ FGV R V H E+G+KI F + L F+R +F
Sbjct: 145 HNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKI------FLTPERRSL-----FERSFLFF 193
Query: 361 VSYVYSF 367
VS+ + F
Sbjct: 194 VSHSWHF 200
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 41.2 bits (95), Expect = 4e-05
Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 33/189 (17%)
Query: 167 SSQIAAISNSLNALDPNSY---SKNISS-MYGVSLSVGYKHFFTKKKNQGLRYYLFYDYG 222
+S ++AI+ + + +Y SKN S + GV++ +GY+H+F GL YY Y
Sbjct: 564 TSMVSAIAQNFSTTSTTTYRSSSKNFRSPILGVNVKIGYQHYF--NDYIGLAYYGIIQYN 621
Query: 223 YTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFI----DNAKKHSSVGFYLGFALAGSSWV 278
Y K+ YG G+D L++FI + + H + + A S V
Sbjct: 622 YAQAND--------EKIQQLSYGGGMDVLFDFITTYTNKKQDHPTKKVF-----ASSFGV 668
Query: 279 GSGLSMWVSQTDFINNYLTGYQAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAMNS 338
GL N+Y Q K + I F R +H+ + +G+ +PL +
Sbjct: 669 FGGL------RGLYNSYYVFNQVK-GSGNLDIVTGFNYRY---KHSKYSIGVSVPLIQSG 718
Query: 339 FYETHGKGL 347
G+
Sbjct: 719 IKIASNNGI 727
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 38.9 bits (89), Expect = 2e-04
Identities = 38/194 (19%), Positives = 80/194 (40%), Gaps = 20/194 (10%)
Query: 142 LEFEENLRNLEVQFAQSQNRMLSSLSSQIAAISNSLNALDPNSYSKNISS-MYGVSLSVG 200
L + N N + MLS++S +++ +S + S+ + + GV+L +G
Sbjct: 533 LSSQTNYLNASLNTQDFATTMLSAISQSLSSSKSSATTYRTSKTSRPFGAPLLGVNLKMG 592
Query: 201 YKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNAKK 260
Y+ +F Y YG + + + + +++ YG+G+D L++FI N
Sbjct: 593 YQKYFND-------YLGLSSYGIIKYNYAQANNEKIQQLS---YGVGMDVLFDFITNYTN 642
Query: 261 HSSVGFYLGFALAGSSWVGSGLSMWVSQTDFINNYLTGYQAKMHTSFFQIPLNFGVRVNV 320
+ L + SS L ++ N+Y Y + + + G+
Sbjct: 643 EKNPKSNLTKKVFTSS-----LGVFGGLRGLYNSY---YLLNQYKGSGNLNVTGGLNYRY 694
Query: 321 NRHNGFEMGLKIPL 334
+H+ + +G+ +PL
Sbjct: 695 -KHSKYSIGISVPL 707
>ref|NP_223142.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 186
Score = 37.7 bits (86), Expect = 5e-04
Identities = 38/145 (26%), Positives = 61/145 (41%), Gaps = 31/145 (21%)
Query: 190 SSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGID 249
+ +YG++ +G+ F K G R Y F D+ F +G + K N YG G D
Sbjct: 49 NDLYGLNFKLGFVGFANKWF--GARVYGFLDW------FNTSGTEHT-KTNLLTYGGGGD 99
Query: 250 YLYNFIDNAKKHSSVGFYLGFALAGSSWVGSGLSMWVSQTDFINNYLTGYQAKMHTSFFQ 309
+ N I K ++G G LAG++W+ + ++ + FQ
Sbjct: 100 LIVNLIPLDK--FALGLIGGVQLAGNTWM--------------------FPYDVNQTRFQ 137
Query: 310 IPLNFGVRVNVNRHNGFEMGLKIPL 334
N G R+ V + FE G+K P+
Sbjct: 138 FLWNLGGRMRVGDRSAFEAGVKFPM 162
>ref|NP_223088.1| putative [Helicobacter pylori J99]
Length = 289
Score = 33.1 bits (74), Expect = 0.012
Identities = 54/228 (23%), Positives = 92/228 (39%), Gaps = 35/228 (15%)
Query: 142 LEFEENLRNLEVQFAQ-SQNRMLSSLSSQIAAISNSLNALDPNSYSKNISS---MYGVSL 197
L+ E + +N + F Q ++N+ + + I + N + NI + +YG L
Sbjct: 91 LKGELHEKNESILFQQMAKNKSGFFIGVILGDIGINANPYEKFELLSNIQASPLLYG--L 148
Query: 198 SVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDN 257
GY+ +F + LR+Y Y G GF + L ID L + +
Sbjct: 149 RSGYQKYFANGIS-ALRFYGEY------LGGAMKGFKSDSLASYQTASLNIDLLMDKPID 201
Query: 258 AKKHSSVGFYLGFALAGSSWVGSGLSMWVSQTDFINNYLTGYQAKMHTSFFQIPLNFGVR 317
+K ++G + G G W G ++ + GY + F + LN GV
Sbjct: 202 KEKRFALGIFGG---VGVGWNGMYQNL---------KEIRGYS---QPNAFGLVLNLGVS 246
Query: 318 VNVNRHNGFEMGLKIPLAMNSFYETHGKGLNTSLFFKRLVMFNVSYVY 365
+ +N + FE+ LK+P ET L +FK ++ +SY Y
Sbjct: 247 MTLNLKHRFELALKMP----PLKETSQTFL---YYFKSTNIYYISYNY 287
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 33.1 bits (74), Expect = 0.012
Identities = 22/75 (29%), Positives = 36/75 (47%), Gaps = 4/75 (5%)
Query: 65 LHQVKNEITSMPKTFAYINNA---LKNNSKLTPTEMQAEQYYLQSTFQNIEKIVMLS-GG 120
LH E+T M FA +NN+ L + P +++A + +QS K+ +S
Sbjct: 23 LHHKNAEVTPMHMLFAMLNNSQGILIQALQKMPVDIEALKLSVQSELNKFAKVSQISKQN 82
Query: 121 VSSNPQLVQALEKMQ 135
+ N L+Q+LE Q
Sbjct: 83 IQLNQALIQSLENAQ 97
>ref|NP_223451.1| NEURAMINYLLACTOSE-BINDING HEMAGGLUTININ PRECURSOR [Helicobacter
pylori J99]
Length = 260
Score = 32.3 bits (72), Expect = 0.020
Identities = 37/161 (22%), Positives = 73/161 (44%), Gaps = 17/161 (10%)
Query: 32 FEYSISHAVEHNNPFLNQERIQIISNAQNKIYKLHQV----KNEITSMPKTFAYINNALK 87
F+YS + A E+ N F NQ +++ QN+ YK+ V K++ + K Y+ A+
Sbjct: 65 FQYSDNIAKEYENKFKNQTTLKVEEILQNQGYKVINVDSSDKDDFSFAQKKEGYLAVAMN 124
Query: 88 NNSKLTP-----TEMQAEQYYLQST-FQNIEKIVMLSGGVSSNPQLVQALEKMQEPITNP 141
L P + ++E L ST +E +++ +G V V LE M +
Sbjct: 125 GEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLIPAGFVK-----VTILEPMSGESLDS 179
Query: 142 LEFEENLRNLEVQFAQSQNRMLSS--LSSQIAAISNSLNAL 180
+ + +++ +F ++ + S +S+ + NS +A+
Sbjct: 180 FTMDLSELDIQEKFLKTTHSSHSGGLVSTMVKGTDNSNDAI 220
>ref|NP_223437.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 455
Score = 31.2 bits (69), Expect = 0.044
Identities = 33/145 (22%), Positives = 61/145 (41%), Gaps = 17/145 (11%)
Query: 216 YLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNAKKHSSVGFYLGFALAGS 275
YLFY YG +G + M+++ G +DY N K SS G ALA
Sbjct: 148 YLFYSYGDKFHLKLGRYLSNMDFMSSYTQGFELDYKINSKIALKWFSS----FGRALAFG 203
Query: 276 SWVGSGLSMWVSQTDFINNYLTGYQAKMHTSFFQI---PLNF---------GVRVNVNRH 323
W+ + V++ Y + A+++ S + P + GV+++++ +
Sbjct: 204 QWIRDWYAPIVTEDGRKEVYDGIHAAQLYFSSKHVQVMPFAYFSPKIYGAPGVKIHIDSN 263
Query: 324 NGFE-MGLKIPLAMNSFYETHGKGL 347
F+ +GL+ +N + + K L
Sbjct: 264 PKFKGLGLRAQTTINVIFPVYAKDL 288
>ref|NP_223273.1| putative [Helicobacter pylori J99]
Length = 189
Score = 31.2 bits (69), Expect = 0.044
Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 26/132 (19%)
Query: 236 LGKMNNHLYGLGIDYLYNFIDNAKKHSSVGFYLGFALAGSSWVGSGLSMWVSQTDFINNY 295
L +N L L +D L +F K S G Y G +G G + N+
Sbjct: 84 LHTINTSLLSLNMDVLSDFY--TYKKYSFGVYGG--------LGIGYFYQSNHLGMKNSS 133
Query: 296 LTGYQAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAMNSFYETHGKGLNTSLFFKR 355
GY N G+ ++RH+ E+G KIP F +T N+ +F
Sbjct: 134 FMGYNGLF---------NVGLGSTIDRHHRVELGAKIP-----FSKTRNSFKNS--YFLE 177
Query: 356 LVMFNVSYVYSF 367
V + +Y Y F
Sbjct: 178 SVFIHAAYSYMF 189
>ref|NP_223089.1| putative [Helicobacter pylori J99]
Length = 313
Score = 29.3 bits (64), Expect = 0.17
Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 33/170 (19%)
Query: 182 PNSYSKNIS---SMYGVSLSVGYKHFFTKKKNQGLRYY--LFYDYGYTNFGF----VGNG 232
P+++ NI+ + +S+ GY+ +F G R+Y L G VG+
Sbjct: 118 PSAFKNNININAPVSMISVKFGYQKYFVPYF--GTRFYGDLLLGGGALKENALKQPVGSF 175
Query: 233 FDGLGKMNNHL-YGLGIDYLYNFIDNAKKHSSVGFYLGFALAGSSWVGSGLSMWVSQTDF 291
F LG MN L + + +D+ KKH +G Y GF G GL ++ + +
Sbjct: 176 FYVLGAMNTDLLFDMPLDF------KTKKHF-LGVYAGF--------GIGLMLYQDKPNQ 220
Query: 292 INNYLT--GYQAK--MHTSFFQIPLNF--GVRVNVNRHNGFEMGLKIPLA 335
L GY + + S ++ F GV + + R + E+G K+P++
Sbjct: 221 NGRNLIVGGYSSPNFLWKSLIEVDYTFNVGVSLTLYRKHRLEIGTKLPIS 270
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 28.5 bits (62), Expect = 0.29
Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 20/163 (12%)
Query: 61 KIYKLHQ---VKNEITSMPKTFAYINNALKNNSKLTPTEMQAEQYYLQSTFQN-----IE 112
K Y+L+Q K+ + L++N KL + Y + +Q+ +E
Sbjct: 156 KAYELYQNALKKDNLVDFDDLLCLSLKILQDNEKLAKETSERYHYIMVDEYQDTNALQLE 215
Query: 113 KIVMLSGG------VSSNPQLVQALEKMQEPITNPLEFEENLRNLEVQFAQSQNRMLSSL 166
+ LS V + Q + I+N L F ++ + ++ ++ R
Sbjct: 216 FLKQLSFTHHNLCVVGDDDQSIYGFRGAD--ISNILNFSKHFKGAKIVKLETNYRS---- 269
Query: 167 SSQIAAISNSLNALDPNSYSKNISSMYGVSLSVGYKHFFTKKK 209
S++I A +NSL + + + + K + S G SV K + T+K+
Sbjct: 270 SAEILACANSLISHNQHRHIKTLQSFKGSHKSVICKEYPTQKE 312
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 27.7 bits (60), Expect = 0.49
Identities = 35/156 (22%), Positives = 69/156 (43%), Gaps = 22/156 (14%)
Query: 48 NQERIQIISN--AQNKIYKLHQVKNEITSMPKTFAYINNAL-KNNSKLTPTEMQAEQYYL 104
N+ ++QI N + N ++ L P + Y N ++ + T +A YYL
Sbjct: 1851 NRLKVQISQNGASNNAMFNL---------APSLYDYQQNPYDESENSYNHTSDKAGTYYL 1901
Query: 105 QSTFQNIEKIVMLSGGVSSNPQLVQALEKMQEPITNPLEFEENLRNLEVQFAQSQNRMLS 164
S+ + K + G ++ Q +QAL + I+ + + +L +F ++++
Sbjct: 1902 SSSIKGFGKNNEIPGTYNAQNQPLQALHIYNQAISK--QDLNMIASLGKEFLPKVAKLIA 1959
Query: 165 SLSSQIAAISNSLNALDPNSYSK--NISSMYGVSLS 198
S A+ N LN P+S+ +I YG++L+
Sbjct: 1960 S-----GALDN-LNLNSPDSFETIFSILKEYGITLN 1989
>ref|NP_223865.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE [Helicobacter
pylori J99]
Length = 345
Score = 26.9 bits (58), Expect = 0.84
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 241 NHL--YGLGIDYLYNFIDNAKKHSSVGFYLGFALAGSSWVGSGLSMWVSQTDFINNYLTG 298
NHL Y L I+ N NAKK SSV F + V L + + ++NY
Sbjct: 180 NHLSAYALSIEKNTNLEKNAKKPSSVDF--------DNVVREVLEGFFFKQYEVSNYARN 231
Query: 299 YQAKMHTSFF 308
YQ K + +++
Sbjct: 232 YQVKHNLAYW 241
>ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori J99]
Length = 1288
Score = 26.6 bits (57), Expect = 1.1
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 172 AISNSLNALDPNSYSKNISSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGN 231
++ S N L ++ N S + +H F N RYY YG T++ ++
Sbjct: 1157 SVGVSYNHLGSTNFKSNSQSQVALKNGASSQHLFNANANVEARYY----YGDTSYFYLHA 1212
Query: 232 G 232
G
Sbjct: 1213 G 1213
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 26.2 bits (56), Expect = 1.4
Identities = 25/135 (18%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
Query: 48 NQERIQIISNAQNKIYKLHQVKNEITSMPKTFAYINNALKNNSKLTPTEMQAEQYYLQST 107
NQ+++ S ++ +KL KNEI ++ N + N+++ T
Sbjct: 366 NQQKMIDKSKEMSRNFKLDSNKNEIDAIKDLIKKANEQITNHNE---------------T 410
Query: 108 FQNIEKIVMLSGGVSSNPQLVQALEKMQEPITNPLEFEENLRNLEVQFAQSQNRMLSSLS 167
++IEK + + + +QE E+ + NLE + +++Q + + L
Sbjct: 411 IKDIEKQKKSCKEQTWKFLINEFKSDIQEYNKKYCGLEKGINNLEKEISENQEK-VKKLE 469
Query: 168 SQIAAISNSLNALDP 182
++I + ++ ++ P
Sbjct: 470 NEIKELEKNMVSIKP 484
>ref|NP_223636.1| DNA transfer protein [Helicobacter pylori J99]
Length = 140
Score = 26.2 bits (56), Expect = 1.4
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 76 PKTFAYINNALKNNSKLTPTEMQAEQYYLQSTFQNIEKIVMLSGGVS 122
P FAYI NAL K+ T A Q Q I+K L G +S
Sbjct: 3 PIMFAYIANALAQARKINGTLCMAFQKISQVKELGIDKAKSLIGNLS 49
>ref|NP_223381.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 305
Score = 26.2 bits (56), Expect = 1.4
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 312 LNFGVRVNVNRHNGFEMGLKIP 333
+NFG + + + N F +GLKIP
Sbjct: 241 VNFGGSLYIGKRNRFNVGLKIP 262
>ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacter pylori J99]
Length = 560
Score = 26.2 bits (56), Expect = 1.4
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 19/144 (13%)
Query: 55 ISNAQNKIYKLHQVKNEITSMPKTFAYINNALKNNSKLTPTEMQAEQYYLQSTFQNIEKI 114
+ NA+ K Y+L Q KN + N+ K+ P ++ +Q L+S + +
Sbjct: 50 LENAK-KAYELTQNKNSALQKAMQEKGVENSDKSPDAKMPEDIYCKQITLESMLETTDAF 108
Query: 115 VMLSGGVSSNPQL-------VQALEKMQEPITN--PLEFEENLRNLEVQFAQSQNRMLSS 165
++ ++ +Q + +QE I P+ +E E++ QS+N S
Sbjct: 109 QASCIAIALKSKIRDFDKIPIQTFKPLQEKIKEAYPILYE------ELEILQSKNVSASL 162
Query: 166 LSSQIAAISNSLNALDPNSYSKNI 189
+ S N L SY K +
Sbjct: 163 FKANAQVFSALFNHL---SYEKKL 183
>ref|NP_224132.1| putative [Helicobacter pylori J99]
Length = 211
Score = 25.8 bits (55), Expect = 1.9
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 214 RYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNAKKHSSVGFYLGFALA 273
RYY F DYG + N G + N YG G D + + N S+ + G +A
Sbjct: 77 RYYFFMDYG----NVILNKRTG-AQANMFTYGFGGDLIMEYNKNPLYVFSL--FYGMQVA 129
Query: 274 GSSWVGSGLSMWVSQTDFINNYLTGYQAKMHTSFFQI--PLNFGVRVNVNRHN-GFEMGL 330
++W S S D+ + G+ K TS F++ + F + + H+ E+G+
Sbjct: 130 ENTWTISKHSANFIIDDW--RSIQGFSLK--TSNFRMLGLVGFKFQTVLFHHDASIEVGI 185
Query: 331 KIPLA 335
K P A
Sbjct: 186 KWPFA 190
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 25.8 bits (55), Expect = 1.9
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 30/160 (18%)
Query: 65 LHQVKNEITSMPKTFAYINNALKNNSKLT---PTEMQAEQYYLQSTFQNIEKIVMLSGGV 121
L + N + M K Y N +LK+ +K+T P E++ L + + K+
Sbjct: 357 LGNLLNRLLGMAKK--YFNYSLKS-TKITAYYPKELEKAHQILDNANSFVPKM------- 406
Query: 122 SSNPQLVQALEKMQEPITNPLEFEENLRNLEVQFAQSQNRMLSSLSSQIAAISNSL---- 177
QL +ALE++ N +F L E + +N L + ++ I+N+L
Sbjct: 407 ----QLHKALEEL----FNIYDFLNKLIAKEEPWVLHKNNESEKLEALLSLIANTLLQSS 458
Query: 178 ---NALDPNSYSKNISSMYGVSLSVG-YKHFFTKKKNQGL 213
A P S K ++S + V ++ Y+ FF KK Q +
Sbjct: 459 FLLYAFMPKSAMK-LASAFRVEITPNNYERFFKAKKLQDM 497
>ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori J99]
Length = 675
Score = 25.8 bits (55), Expect = 1.9
Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 7/142 (4%)
Query: 44 NPFLNQERIQIISNAQNKIYKLHQVKNEITSMPKTFAYINNALKNNSKLTPTEMQAEQYY 103
N ++ E I+ + A K K+ + I + ++ ++ S + A YY
Sbjct: 532 NALVDSEIIEWLYQASQKGVKIDLIIRGICCLKPQVKGLSENIRVYSIVGKYLEHARIYY 591
Query: 104 LQSTFQNIEKIVMLSGGVSSNPQLVQALEKMQEPITNPLEFEENLRNLEVQFAQSQNRML 163
+ E I S + P+ ++ ++ P TNP + L LE+Q + R
Sbjct: 592 FKH-----ENIYFSSADLM--PRNLERRVELLIPATNPKIANKLLHILEIQLKDTLKRYE 644
Query: 164 SSLSSQIAAISNSLNALDPNSY 185
+ + A ISN + L+ Y
Sbjct: 645 LNSKGRYAKISNPNDPLNSQDY 666
>ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 920
Score = 25.4 bits (54), Expect = 2.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 120 GVSSNPQLVQALEKMQEPITNPLEFEENLRNLEVQFAQSQ 159
G+ Q+++ LEK + + NP F E R+ +F + Q
Sbjct: 99 GLPIEQQILEQLEKEKTSLENPTLFREKCRDHAKKFLEIQ 138
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 25.0 bits (53), Expect = 3.2
Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 12/145 (8%)
Query: 37 SHAVEHNNPFLNQERIQIISNAQNKIYKLHQVKNEITSMPKTFAYINNALKNNSKLTPTE 96
+H NP E + N++ N P T + NNA+KN + TPT
Sbjct: 119 THEANETNPKTPNETLSKNEKKPNEVASNAHQTNLPNKNPITPNHANNAIKNPT--TPTH 176
Query: 97 MQAEQYYLQSTFQNIEKIVMLSGGVSSNPQLVQALEKMQEPITNPLEFEENLRNLEVQFA 156
+ T ++I+ + +SN Q E NPL ++L L+ A
Sbjct: 177 NVKD----PKTLKDIQTLSQKHDLNASNIQAATTPEN-----KNPLNASDHLA-LKTTQA 226
Query: 157 QSQNRMLSSLSSQIAAISNSLNALD 181
+ + + + A +S+ L +L+
Sbjct: 227 SINHTLTKNDAKNTANLSSVLQSLE 251
>ref|NP_223050.1| putative [Helicobacter pylori J99]
Length = 98
Score = 25.0 bits (53), Expect = 3.2
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 300 QAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKI 332
+AK H F+IPLN ++ +N G+ G++I
Sbjct: 4 EAKKH---FRIPLNRANKITLNFTGGYRSGVQI 33
>ref|NP_223802.1| putative PYRROLINE-5-CARBOXYLATE REDUCTASE [Helicobacter pylori
J99]
Length = 257
Score = 24.6 bits (52), Expect = 4.1
Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 96 EMQAEQYYLQSTFQNIEKIVMLSGGVSSNPQLVQALEKMQ--EPITNPLEFEENLRNLEV 153
E+ ++++ L+ T +N EKI + Q+V + + + L NL++
Sbjct: 22 EILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFNY 81
Query: 154 QFAQSQNRMLSSLSSQIAAISNSLNALDPNSYSKNISSMYGVS 196
Q Q+++ + + A+SN++N+L NI+S + +S
Sbjct: 82 Q-GQAKSVLSALAGVNFEALSNAINSLHYLKCMPNIASKFALS 123
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 24.6 bits (52), Expect = 4.1
Identities = 37/149 (24%), Positives = 57/149 (37%), Gaps = 32/149 (21%)
Query: 42 HNNPFLNQERIQIISNA-QNKIYKLHQVKN-----EITSMPKTFAYINNALKNNSKLTPT 95
+ N QE IQ + A QN I + V+N EI +PK K+ L T
Sbjct: 371 NENILKTQESIQADNKAIQNSIEVTNYVENGDFTQEIACVPKN--------KDLQALRNT 422
Query: 96 EMQAEQYYLQSTFQNIEKIVMLSGGVSSNPQLVQALEKMQEPITNPLEFEENLRNLEVQF 155
QY+ +IE L ALE + L+F +++N +
Sbjct: 423 INSIIQYFRNQIGADIES-------------LNNALEHYKN-----LDFTHHIQNPKANM 464
Query: 156 AQSQNRMLSSLSSQIAAISNSLNALDPNS 184
++ N + +SS + A NAL+ S
Sbjct: 465 EKALNTLGQEISSMLKASLGFANALNHES 493
>ref|NP_223459.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 292
Score = 24.3 bits (51), Expect = 5.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 6 LHSSFFLPLFLSFCIAEENGAYASVGFEYSISH 38
LH SF + L+FC +++ A F Y++ H
Sbjct: 71 LHPSFMVEDLLAFCKNKKHPPCALKNFFYALKH 103
>ref|NP_223207.1| cag island protein [Helicobacter pylori J99]
Length = 370
Score = 24.3 bits (51), Expect = 5.4
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 146 ENLRNLEVQFAQSQNRMLSSLSSQIAAISNSLNALDPNSYSKNISSMYGVSL 197
E LR ++F ++ +L + S I S + NISS+Y ++
Sbjct: 279 EILREYYIEFVKNNTNLLQNASQMILNQSGLATSTYDTQAISNISSLYNYNI 330
>ref|NP_223145.1| Molybdate ABC transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 265
Score = 24.3 bits (51), Expect = 5.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 70 NEITSMPKTFAYINNAL 86
NEIT + +TF ++NN +
Sbjct: 193 NEITKLARTFLFLNNGV 209
>ref|NP_222748.1| putative [Helicobacter pylori J99]
Length = 565
Score = 24.3 bits (51), Expect = 5.4
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 24 NGAYASVGFEYSISHAVEHNNPFLNQERIQIISNAQNKIYKLHQVKNEITSMPKTFAY 81
N + ++ F + I + + + LN+ +++ A + KL Q+KNE+TS AY
Sbjct: 500 NSLHNTLNFIFDIDNPMSDQS--LNELVVEVPREALKNV-KLPQIKNELTSQIFDGAY 554
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 23.9 bits (50), Expect = 7.1
Identities = 40/191 (20%), Positives = 70/191 (35%), Gaps = 10/191 (5%)
Query: 41 EHNNPFLNQERIQIIS----NAQNKIYKLHQVKNEITSMPKTFAYINNALKNNSKLTPTE 96
E+ F QE QI S ++KI+ + ++ + K N + P +
Sbjct: 708 EYEQGFSVQEMFQISSVGIVTGKDKIFIANNTESLKEQVLKYCNEFNEQCVKDIHYRPFD 767
Query: 97 MQAEQY---YLQSTFQNIEKIVMLSGGVSSNPQLVQALEKMQEPITNPLEFEENLRNLEV 153
++ Y L+ +N K ML +NP+ K + P + + N ++
Sbjct: 768 IRKVYYDTKKLERARENTFKH-MLPPPPPTNPKTPNQTRK-NVALNTPRQLKNNDKSWTQ 825
Query: 154 QFAQSQ-NRMLSSLSSQIAAISNSLNALDPNSYSKNISSMYGVSLSVGYKHFFTKKKNQG 212
F SQ N S A ++ L +Y++N + + + Y H F + G
Sbjct: 826 CFISSQLNDQGLSSGGNGAGVNYPLYQFKHPNYTENFTPEFRSFIDKHYSHHFEPLEVLG 885
Query: 213 LRYYLFYDYGY 223
Y L Y Y
Sbjct: 886 YIYALLYSPHY 896
>ref|NP_223109.1| putative [Helicobacter pylori J99]
Length = 294
Score = 23.9 bits (50), Expect = 7.1
Identities = 15/58 (25%), Positives = 28/58 (47%), Gaps = 1/58 (1%)
Query: 166 LSSQIAAISNSLNALDPNSYSKNISSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGY 223
+S+Q + + N +NA +P S+ N + ++++ G + L Y L Y GY
Sbjct: 1 MSNQASHLDNFMNAKNPKSFFDNKGNTKFIAITSGKGGVGKSNISANLAYSL-YKKGY 57
>ref|NP_223065.1| putative [Helicobacter pylori J99]
Length = 381
Score = 23.9 bits (50), Expect = 7.1
Identities = 13/37 (35%), Positives = 20/37 (53%), Gaps = 1/37 (2%)
Query: 133 KMQEPITNPLEFEENLRNLEVQFAQSQNRMLSSLSSQ 169
K P TN LE +N+R E ++S+N M L ++
Sbjct: 48 KSMHPCTNVLEIYDNIRK-EPLTSESKNLMFYGLDTE 83
>ref|NP_223993.1| PHOSPHATIDYLSERINE DECARBOXYLASE [Helicobacter pylori J99]
Length = 267
Score = 23.5 bits (49), Expect = 9.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 63 YKLHQVKNEITSMPKTFAYIN 83
YK H++ EI + +F Y+N
Sbjct: 100 YKAHELVGEINPLSPSFFYVN 120
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 23.5 bits (49), Expect = 9.2
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 110 NIEKIVMLSGGVSSNPQLVQALEKMQEPITNPLEFEENLRNLEVQFAQSQNRMLSSLSSQ 169
N+ ++ ++ GG S+P QE + + ENLR +F + + S
Sbjct: 642 NLSEVALIGGGGDSSPFQTFVFSHSQEAVDKSV---ENLR----KFLLESPELKGKVESY 694
Query: 170 IAAISNSLNALDPNSYSKNISSMYGVS 196
+ S S L +N ++ YGVS
Sbjct: 695 HTSTSESQPQLQLKILRQN-ANKYGVS 720
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,667
Number of Sequences: 1491
Number of extensions: 21049
Number of successful extensions: 239
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 90
length of query: 367
length of database: 494,079
effective HSP length: 79
effective length of query: 288
effective length of database: 376,290
effective search space: 108371520
effective search space used: 108371520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)