BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645110|ref|NP_207280.1| hypothetical protein
[Helicobacter pylori 26695]
(170 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223152.1| putative [Helicobacter pylori J99] 328 6e-92
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 26 0.65
ref|NP_222962.1| putative [Helicobacter pylori J99] 26 0.65
ref|NP_223607.1| putative PROLIPOPROTEIN DIACYLGLYCERYL TRA... 25 1.5
ref|NP_222897.1| putative cardiolipin synthase [Helicobacte... 25 1.5
ref|NP_222977.1| putative [Helicobacter pylori J99] 23 3.2
ref|NP_223523.1| CDP-DIACYLGLYCEROL PYROPHOSPHATASE [Helico... 23 4.2
ref|NP_223206.1| cag island protein [Helicobacter pylori J99] 23 4.2
ref|NP_223157.1| putative Outer membrane protein [Helicobac... 23 4.2
ref|NP_224110.1| putative [Helicobacter pylori J99] 23 5.5
ref|NP_223270.1| putative [Helicobacter pylori J99] 23 5.5
ref|NP_224068.1| putative [Helicobacter pylori J99] 22 7.2
ref|NP_223379.1| L-asparaginase II [Helicobacter pylori J99] 22 7.2
ref|NP_223645.1| putative [Helicobacter pylori J99] 22 9.4
>ref|NP_223152.1| putative [Helicobacter pylori J99]
Length = 175
Score = 328 bits (840), Expect = 6e-92
Identities = 160/170 (94%), Positives = 165/170 (96%)
Query: 1 MHISEVKTAFKIADVEYVKDSTKLNFNYLKDLKDENNQPLSQNILTQNVARVYLIVVNGE 60
MHIS VKTAFKIADVEYVKDSTKLNFNYLKDLKDENNQ LSQNILTQNVAR YLIVV+GE
Sbjct: 1 MHISGVKTAFKIADVEYVKDSTKLNFNYLKDLKDENNQSLSQNILTQNVARAYLIVVDGE 60
Query: 61 IKKIGGSQADGGIKSTLNIYKDGGVKGRPNIRSFGVWYFLYHTILTGAKIEFYMIYQPNF 120
IKKIGGSQADGGIKSTLNIYKDGGVKGR +IRSFGVWYFLYHTILTGAKIEFYMIYQPNF
Sbjct: 61 IKKIGGSQADGGIKSTLNIYKDGGVKGRSSIRSFGVWYFLYHTILTGAKIEFYMIYQPNF 120
Query: 121 ETQVKGLFGFCAIKDASISYKLLEQACLTDYRNNSNDALPEWNVQEQGKD 170
ETQVKGLFGFCAIKDASISYKLLEQACLTDYRNN+NDALPEWN +EQGK+
Sbjct: 121 ETQVKGLFGFCAIKDASISYKLLEQACLTDYRNNNNDALPEWNAREQGKE 170
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 25.8 bits (55), Expect = 0.65
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 3 ISEVKTAFKIADVEYVKDSTKLNFNYLKDLKDENNQPLSQNILTQNVARVYLIVVNG--E 60
++ V K A VE DST + + Y L ++ +L R L+ V+G E
Sbjct: 114 LNRVSNLPKDAKVEIGSDSTSIGWAYQYALSSDSKNLSDLKVLQDFYYRYALLGVDGVSE 173
Query: 61 IKKIGGSQAD 70
+ +GG D
Sbjct: 174 VASVGGFVKD 183
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 25.8 bits (55), Expect = 0.65
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 12 IADVEYVKDSTKLNFNYLKDLKDENNQPLSQNILTQNVARVYLIVVNGEIKKI 64
+ +++ KDS K+ Y K +KD + + +N+ TQN + + + E+ KI
Sbjct: 112 LREIKQAKDS-KIGETYSK-MKDSKSALILENLPTQNALEILMALKPQELGKI 162
>ref|NP_223607.1| putative PROLIPOPROTEIN DIACYLGLYCERYL TRANSFERASE [Helicobacter
pylori J99]
Length = 283
Score = 24.6 bits (52), Expect = 1.5
Identities = 12/32 (37%), Positives = 19/32 (58%), Gaps = 2/32 (6%)
Query: 88 RPNIRSFGVWYFLYHTILTGAKIEFYMIYQPN 119
R S+ +W L I+ GA+I + +IY+PN
Sbjct: 56 RKEFESYFLWAEL--GIVLGARIGYVLIYEPN 85
>ref|NP_222897.1| putative cardiolipin synthase [Helicobacter pylori J99]
Length = 502
Score = 24.6 bits (52), Expect = 1.5
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 4 SEVKTAFKIADVEYVKDSTKLNFNY-------LKDLKDENNQPLSQNILTQNVARVYLIV 56
S +K AF+ A ++ KDS + +Y +K K++ ++ + NILT +++ IV
Sbjct: 301 SPIKIAFEKA-LKNAKDSVFIASSYFIPGKKIMKIFKNQISKGIELNILTNSLSSTDAIV 359
Query: 57 VNG 59
V G
Sbjct: 360 VYG 362
>ref|NP_222977.1| putative [Helicobacter pylori J99]
Length = 327
Score = 23.5 bits (49), Expect = 3.2
Identities = 13/49 (26%), Positives = 29/49 (58%), Gaps = 4/49 (8%)
Query: 10 FKIADVEYVKDSTKLNFNYLKDLKDENNQPLSQNILTQNVARVYLIVVN 58
FKI DV+++ L +++++D + N+PL +L + +R Y ++ +
Sbjct: 130 FKIQDVDFLFSPFSLIYDFVRD--NLENKPLLYLLLER--SRFYFLIAD 174
>ref|NP_223523.1| CDP-DIACYLGLYCEROL PYROPHOSPHATASE [Helicobacter pylori J99]
Length = 244
Score = 23.1 bits (48), Expect = 4.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 134 KDASISYKLLEQACLTDYRNNSN 156
KD ++ K++ + CL +Y N N
Sbjct: 22 KDPNVLRKIVFEKCLPNYEKNQN 44
>ref|NP_223206.1| cag island protein [Helicobacter pylori J99]
Length = 381
Score = 23.1 bits (48), Expect = 4.2
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Query: 47 QNVARVYLIVVNGEIKKIGGS 67
QN+A YL +NGEIK + GS
Sbjct: 309 QNIA--YLNGINGEIKTLKGS 327
>ref|NP_223157.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 465
Score = 23.1 bits (48), Expect = 4.2
Identities = 9/17 (52%), Positives = 13/17 (75%)
Query: 9 AFKIADVEYVKDSTKLN 25
A IAD++Y KD+ K+N
Sbjct: 219 ALMIADLKYEKDNLKIN 235
>ref|NP_224110.1| putative [Helicobacter pylori J99]
Length = 306
Score = 22.7 bits (47), Expect = 5.5
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 111 EFYMIYQPNFETQVKGLFGFCAIKDASISYKLLEQACLTDYRNNSNDAL--PEWNVQEQG 168
EF +I +F+T F D + +YK L+ C D NN D + P+ + + G
Sbjct: 56 EFEIIVGLDFKTTDSKSIRF--FLDLNKTYKKLKFYCYGDKENNKTDIVFHPKIYMFDNG 113
Query: 169 KD 170
K+
Sbjct: 114 KE 115
>ref|NP_223270.1| putative [Helicobacter pylori J99]
Length = 477
Score = 22.7 bits (47), Expect = 5.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 66 GSQADGGIKSTLNIYKDGGV 85
G Q G+ +TLNI+ D G+
Sbjct: 343 GQQNTAGVTATLNIFDDIGL 362
>ref|NP_224068.1| putative [Helicobacter pylori J99]
Length = 210
Score = 22.3 bits (46), Expect = 7.2
Identities = 13/44 (29%), Positives = 20/44 (44%), Gaps = 1/44 (2%)
Query: 29 LKDLKDENNQP-LSQNILTQNVARVYLIVVNGEIKKIGGSQADG 71
+ D+ ++ QP L N+LT +AR + NG S G
Sbjct: 77 VSDVINDTTQPNLDMNLLTTEIARQLRLRSNGRFNITRASGGSG 120
>ref|NP_223379.1| L-asparaginase II [Helicobacter pylori J99]
Length = 332
Score = 22.3 bits (46), Expect = 7.2
Identities = 14/44 (31%), Positives = 22/44 (49%), Gaps = 9/44 (20%)
Query: 45 LTQNVARVYLIVVNGEIKKIGGSQADGGIKSTLNIYKDG--GVK 86
+ QN+ + L+ GG+ A G+ ++L YK G GVK
Sbjct: 1 MAQNLPTIALLAT-------GGTIAGSGVDASLGSYKSGELGVK 37
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 21.9 bits (45), Expect = 9.4
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 13/62 (20%)
Query: 4 SEVKTAFKIADVEYVKDSTKLNFNYLKDLKDENNQPLSQNILTQNVARVYLIVVNGEIKK 63
S +K FKI D L DL PLS ++ +N +V + +KK
Sbjct: 943 SRLKAYFKIKDA-------------LNDLTSAELNPLSSDLELENKRAKLNLVYDEFVKK 989
Query: 64 IG 65
G
Sbjct: 990 FG 991
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.137 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,916
Number of Sequences: 1491
Number of extensions: 8542
Number of successful extensions: 28
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 14
length of query: 170
length of database: 494,079
effective HSP length: 72
effective length of query: 98
effective length of database: 386,727
effective search space: 37899246
effective search space used: 37899246
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)