BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645116|ref|NP_207286.1| hypothetical protein
[Helicobacter pylori 26695]
(295 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223759.1| putative [Helicobacter pylori J99] 415 e-118
ref|NP_223159.1| putative [Helicobacter pylori J99] 249 6e-68
ref|NP_222772.1| putative [Helicobacter pylori J99] 46 1e-06
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 42 2e-05
ref|NP_222774.1| putative [Helicobacter pylori J99] 40 7e-05
ref|NP_223025.1| putative [Helicobacter pylori J99] 39 2e-04
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 38 3e-04
ref|NP_223787.1| putative [Helicobacter pylori J99] 37 6e-04
ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1)... 37 6e-04
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 35 0.002
ref|NP_224063.1| putative thiophene/furan oxidation protein... 35 0.002
ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter p... 34 0.004
ref|NP_223645.1| putative [Helicobacter pylori J99] 33 0.009
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 33 0.012
ref|NP_224153.1| putative [Helicobacter pylori J99] 32 0.026
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 32 0.026
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 31 0.034
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 31 0.034
ref|NP_223830.1| putative [Helicobacter pylori J99] 30 0.098
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 29 0.17
ref|NP_222780.1| putative [Helicobacter pylori J99] 29 0.17
ref|NP_223560.1| putative [Helicobacter pylori J99] 28 0.22
ref|NP_222962.1| putative [Helicobacter pylori J99] 28 0.22
ref|NP_222961.1| putative [Helicobacter pylori J99] 28 0.22
ref|NP_224090.1| putative [Helicobacter pylori J99] 28 0.29
ref|NP_223788.1| putative [Helicobacter pylori J99] 28 0.29
ref|NP_223205.1| cag island protein [Helicobacter pylori J99] 28 0.29
ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99] 28 0.29
ref|NP_223629.1| putative [Helicobacter pylori J99] 28 0.37
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 28 0.37
ref|NP_224183.1| FLAGELLAR HOOK-BASAL BODY COMPLEX PROTEIN ... 27 0.64
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 27 0.64
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 27 0.64
ref|NP_222874.1| putative [Helicobacter pylori J99] 27 0.64
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 27 0.64
ref|NP_223739.1| putative Outer membrane protein [Helicobac... 27 0.83
ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicob... 27 0.83
ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 26 1.1
ref|NP_223387.1| putative [Helicobacter pylori J99] 26 1.1
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 26 1.4
ref|NP_223971.1| putative [Helicobacter pylori J99] 26 1.4
ref|NP_223162.1| putative paralog of HpaA [Helicobacter pyl... 26 1.4
ref|NP_223017.1| putative [Helicobacter pylori J99] 26 1.4
ref|NP_224138.1| glutamine fructose-6-phosphate aminotransf... 25 1.9
ref|NP_222886.1| putative [Helicobacter pylori J99] 25 1.9
ref|NP_224131.1| putative [Helicobacter pylori J99] 25 2.4
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 25 2.4
ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99] 25 2.4
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 25 2.4
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 25 2.4
ref|NP_223963.1| FUMARASE [Helicobacter pylori J99] 25 3.2
ref|NP_223594.1| ALANINE RACEMASE [Helicobacter pylori J99] 25 3.2
ref|NP_222834.1| THREONYL-TRNA SYNTHETASE [Helicobacter pyl... 25 3.2
ref|NP_224044.1| putative [Helicobacter pylori J99] 24 4.1
ref|NP_223238.1| putative [Helicobacter pylori J99] 24 4.1
ref|NP_223778.1| ATP synthase F1, subunit gamma [Helicobact... 24 5.4
ref|NP_223656.1| putative [Helicobacter pylori J99] 24 5.4
ref|NP_223531.1| putative [Helicobacter pylori J99] 24 5.4
ref|NP_223327.1| putative [Helicobacter pylori J99] 24 5.4
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 24 5.4
ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrop... 24 5.4
ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN ... 23 7.1
ref|NP_224041.1| putative [Helicobacter pylori J99] 23 7.1
ref|NP_223943.1| putative 30S RIBOSOMAL PROTEIN S8 [Helicob... 23 7.1
ref|NP_223859.1| putative ABC transporter, ATP-binding prot... 23 7.1
ref|NP_223567.1| Outer membrane protein/porin [Helicobacter... 23 7.1
ref|NP_223463.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 23 7.1
ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helico... 23 7.1
ref|NP_223209.1| cag island protein [Helicobacter pylori J99] 23 7.1
ref|NP_222997.1| putative [Helicobacter pylori J99] 23 7.1
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 23 7.1
ref|NP_222743.1| putative Outer membrane protein [Helicobac... 23 7.1
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 23 9.2
ref|NP_224034.1| DNA transfer protein [Helicobacter pylori ... 23 9.2
ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALP... 23 9.2
ref|NP_223270.1| putative [Helicobacter pylori J99] 23 9.2
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 415 bits (1066), Expect = e-118
Identities = 215/255 (84%), Positives = 233/255 (91%)
Query: 2 INYPNLPNSALEITEQPEVKEITNELLKQLQNALNSNSLFSEQVELSLKGIVRILEVLLS 61
+NYPNLPNSALEI+EQPEVKEITNELLKQLQNAL SN+ FSEQVELSLK IVRILEVLLS
Sbjct: 1 MNYPNLPNSALEISEQPEVKEITNELLKQLQNALRSNAHFSEQVELSLKCIVRILEVLLS 60
Query: 62 LDFFKNANEIDSSLRNSIEWLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNAN 121
LDFFKNANEIDSSLRNSIEWL NAGESLK KMKEYE FFS+FNTSM NEQEV+ TLNAN
Sbjct: 61 LDFFKNANEIDSSLRNSIEWLTNAGESLKLKMKEYERFFSEFNTSMHANEQEVTNTLNAN 120
Query: 122 TENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEALNQAKTSAN 181
ENIKSEIKKLENQLIETTTRLLTSYQIFLN ARD+ANNQIT NKT+SLEA+ QAK +AN
Sbjct: 121 AENIKSEIKKLENQLIETTTRLLTSYQIFLNQARDNANNQITKNKTQSLEAITQAKNNAN 180
Query: 182 NEITANQTQALTNINEAKENANNQITENKTQAITNINEARESATTQITTNKQEVLNSITQ 241
NEI+ NQTQA+TNI EAK NANN+I+ N+TQAITNINEA+ESATTQI NKQE +N+ITQ
Sbjct: 181 NEISNNQTQAITNITEAKTNANNEISNNQTQAITNINEAKESATTQINANKQEAINNITQ 240
Query: 242 EKNQATSEITEAKKS 256
EK QATSEITEAKK+
Sbjct: 241 EKTQATSEITEAKKT 255
>ref|NP_223159.1| putative [Helicobacter pylori J99]
Length = 181
Score = 249 bits (636), Expect = 6e-68
Identities = 128/143 (89%), Positives = 136/143 (94%)
Query: 2 INYPNLPNSALEITEQPEVKEITNELLKQLQNALNSNSLFSEQVELSLKGIVRILEVLLS 61
+NYPNLPNS LEIT+QPEVKEITNELLKQLQNAL+SN+LF+EQVELSLKGIVRILEVLLS
Sbjct: 1 MNYPNLPNSTLEITQQPEVKEITNELLKQLQNALHSNALFTEQVELSLKGIVRILEVLLS 60
Query: 62 LDFFKNANEIDSSLRNSIEWLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNAN 121
LDFFKNANEIDSSLRNSIEWL+NAGESLKTKMKEYE FFS+FNTSM NEQEV+ATLNAN
Sbjct: 61 LDFFKNANEIDSSLRNSIEWLSNAGESLKTKMKEYERFFSEFNTSMHANEQEVTATLNAN 120
Query: 122 TENIKSEIKKLENQLIETTTRLL 144
TENIKSEIKKLENQLIE T LL
Sbjct: 121 TENIKSEIKKLENQLIEETRMLL 143
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 45.8 bits (107), Expect = 1e-06
Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 23/210 (10%)
Query: 64 FFKNANEIDSSLRNSIEWLNNAGESLK-TKMKEYEGFFSDFNTSMRTNEQEVSATLNANT 122
F K++N+ + +++++ N + K T+ E T E+E + L A+
Sbjct: 2 FGKSSNDTQENPKDALKSTNFHEKHTKPTETTELVEENKALTTEKERLERE-NKNLTADK 60
Query: 123 ENIKSEIKKLENQLIETTTRLLTSYQIFLNNARD---------SANNQITANKTESLEAL 173
EN+ E +L+ Q+ E L S Q+ N D +T KTE E
Sbjct: 61 ENLTKEKTELQKQVNE----LKNSKQVLENEKADWLREKENLTKDRENLTKEKTELTEKN 116
Query: 174 NQAKT------SANNEITANQTQALTNINEAKENANNQITENKTQAITNINEARESATTQ 227
T + +T +T++ +NE K + Q+ EN+ +TN N ++ T
Sbjct: 117 KVLTTEKERLATEKENLTKEKTESQKQVNELKNS--KQVLENEKADLTNENTKLKTDKTD 174
Query: 228 ITTNKQEVLNSITQEKNQATSEITEAKKSA 257
+T Q + T+ N+ T TE ++ A
Sbjct: 175 LTEKNQRLTTEKTELNNKITGLATEKERLA 204
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 42.0 bits (97), Expect = 2e-05
Identities = 55/240 (22%), Positives = 102/240 (41%), Gaps = 24/240 (10%)
Query: 33 NALNSNSLFSEQVELSLKGIVRILE-VLLSLDFFKNANEIDSSLRNSIEWLNNAGESLKT 91
N LNS+S F+ SLKG V + +L+ N N+ L + +S
Sbjct: 336 NTLNSSSPFA-----SLKGSVSFNSGAIFNLNQTLNNNQTYDILTTNGAIQYGVYQSYLW 390
Query: 92 KMKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTSYQIFL 151
+ Y+G + + + N +V+ +N E ++ + NQ I T Q
Sbjct: 391 DLINYKGDKAISHVEVSNNTYDVTFDINGQDETLQ---ETFSNQSIIT--------QFLG 439
Query: 152 NNARDSANNQITANKTESLEALNQA---KTSANNEITANQTQALTNINEAK--ENANNQI 206
++ + A + S ALN+ T ANN+ + Q+ T + +A+ EN N QI
Sbjct: 440 DDLQQQAQQTYQEDVANSQNALNKVASDNTIANNDTSYTQSSNPTILKDAQGLENTNQQI 499
Query: 207 TENKTQAITNINEARESATTQITTNKQEVLNSITQEKNQATSEITEAKKSAFNELLETLK 266
+++ ++ + ++ A + TT E + Q++ Q + + ++AFN E L+
Sbjct: 500 QQDEKALEKDLAQIKQLANS--TTGFNEQAFTQAQKQEQQDEQALQNDENAFNTEQEGLE 557
Score = 32.7 bits (73), Expect = 0.012
Identities = 49/219 (22%), Positives = 85/219 (38%), Gaps = 40/219 (18%)
Query: 33 NALNSNSLFSEQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLNNAGESLKTK 92
N LNS+ + E ++ L+++ N N +++ N L N +S +
Sbjct: 1120 NPLNSSQIIQESIKNGD----------LTIEVLNNPNSASNTIFNIAPELYNYQDSKQNP 1169
Query: 93 MKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTSYQIFLN 152
G+ D++ + A T + S IK L T + +Y F N
Sbjct: 1170 T----GYSYDYSDNQ------------AGTYYLTSNIKGLFTPKGSQTPQTPGTYSPF-N 1212
Query: 153 NARDSANNQITANKTESLEAL----NQAKTSANNEITANQTQALTNINEAKENANN-QIT 207
+S N +E+L+ L +Q + I +NQ +TNINE + + +IT
Sbjct: 1213 QPLNSLNIYNKGFSSENLKTLLGILSQNSATLKEMIESNQLDNITNINEVLQLLDKIKIT 1272
Query: 208 ENKTQAI--------TNINEARESATTQITTNKQEVLNS 238
+ + QA+ NIN+ + I + V NS
Sbjct: 1273 QAQKQALLETINHLTDNINQTFNNGNLVIGATQDNVTNS 1311
Score = 27.3 bits (59), Expect = 0.49
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
Query: 121 NTENIKSEIKKLENQLIETTTRLLTSYQIFLNN-ARDSANNQITANKTESLEALNQAKTS 179
NT+ + + + TT+LL + L++ + + N T ++ N+++ +
Sbjct: 835 NTQAVFNVLYSRGTSNFNATTQLLGNTSFTLSSQSLLNFNGDTTLQNNANITLGNKSQAA 894
Query: 180 ANNEITANQTQALTNINEAKENANNQITENKTQAITNINEARESATTQITTN 231
N +T + L+ N++ NAN N QA NI ++A + + N
Sbjct: 895 FKNSLTLDNNSNLSLDNQSVLNANGTSAFN-NQASLNIYNGSQAAFSSLFFN 945
Score = 24.3 bits (51), Expect = 4.1
Identities = 20/63 (31%), Positives = 29/63 (45%), Gaps = 10/63 (15%)
Query: 204 NQITENKTQAITNINEARE----SATTQI------TTNKQEVLNSITQEKNQATSEITEA 253
N + N TQA+ N+ +R +ATTQ+ T + Q +LN Q + IT
Sbjct: 829 NSLIFNNTQAVFNVLYSRGTSNFNATTQLLGNTSFTLSSQSLLNFNGDTTLQNNANITLG 888
Query: 254 KKS 256
KS
Sbjct: 889 NKS 891
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 40.0 bits (92), Expect = 7e-05
Identities = 44/180 (24%), Positives = 72/180 (39%), Gaps = 27/180 (15%)
Query: 83 NNAGESLKTKMKEYEGFFSDFNTSM---RTNEQEVSATLNANTENIKSEIKKLENQLIET 139
NN K ++K + + NT + R E L E +K E +L +++ E
Sbjct: 99 NNKLTKEKAELKTEKDILAKENTRLLAARDRLTEEKRELTTEKERLKRENTELTHKITE- 157
Query: 140 TTRLLTSYQIFLNNARDSANNQITA--NKTESLEALNQAKTSAN-------------NEI 184
LT L D N+Q+TA N+ +SLE A+ N+
Sbjct: 158 ----LTKENKALTTENDKLNHQVTALTNERDSLEQERARLQDAHGFLEKRCTNLEKENQR 213
Query: 185 TANQTQALTNINEAKENANNQITENKTQAITNINEARESATTQITTNKQEVLNSITQEKN 244
++ + L + ++ EN NNQ+ QA+ N N A +I K E+ I + K+
Sbjct: 214 LTDKLKQLESAQKSLENTNNQL----RQALENSNVQLAQAKEKIAIEKSELEREIARLKS 269
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 38.5 bits (88), Expect = 2e-04
Identities = 56/263 (21%), Positives = 105/263 (39%), Gaps = 33/263 (12%)
Query: 23 ITNELLKQLQNALNSNSLFSEQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWL 82
+ E+LK LQ L SN+ E + +L ILE + D +N ++++ +
Sbjct: 102 LPTEMLKVLQKKLGSNASELEPSQ-NLDPTQEILET--NWDELENLGDLEALAKEE---- 154
Query: 83 NNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKK----------- 131
N E L + E EG ++EV E K E+ +
Sbjct: 155 PNNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDD 214
Query: 132 -----LENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEALNQAKTSANNEITA 186
+E E ++ L + + ++ + +T+ ++ Q KT + +A
Sbjct: 215 ETQGSVEPPKDEEVSKELETQEELETPKEETQEQEPIKEETQEIKEEKQEKTQ--DSPSA 272
Query: 187 NQTQALTN-INEAKENANNQITENKTQAITNINEARESATTQITTNKQEVLNSITQEKNQ 245
+ +A+ + E +EN+N+Q + +TQ E +E+ T QE L +E+ Q
Sbjct: 273 QELEAMQELVKEIQENSNDQENKKETQ------ETQENTETPQDIETQE-LEIPKEEETQ 325
Query: 246 ATSEITEAKKSAFNELLETLKPK 268
+E T+ + E+ ET + K
Sbjct: 326 EVAEKTQVQGLEKEEIAETPQEK 348
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 38.1 bits (87), Expect = 3e-04
Identities = 37/161 (22%), Positives = 74/161 (44%), Gaps = 20/161 (12%)
Query: 28 LKQLQNALNSNSLFSEQV------ELSLKGIVRILEVLLSLDFFKNANEIDSS--LRNSI 79
L++L+NALN ++ E L ++I E +L + KNA +++ L+ ++
Sbjct: 653 LEELENALNEKEALLDEFIEEHSNEEGLFDGLKINESVLKKEL-KNATDLEDKQILKTAL 711
Query: 80 EWLNNAGESLKTKMKEYEGF-FSDFNTSMRTNEQEV------SATLNANTENIKSEIKKL 132
EWL ++LK K K YE F+ E+ LN+ ++++I+K
Sbjct: 712 EWLEAKNKALKMKNKAYEELELKAFHQYKNLEINEIKDLIIKDKWLNSLKNALENKIQKR 771
Query: 133 ENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEAL 173
N +++SY +N+ + ++ ++++ LE L
Sbjct: 772 TNAFASALNEIISSY----SNSLLELDKEVKESESKVLEHL 808
Score = 37.4 bits (85), Expect = 5e-04
Identities = 46/182 (25%), Positives = 68/182 (37%), Gaps = 39/182 (21%)
Query: 87 ESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTS 146
E L+ + E E +F +NE+ + L N +K E+K
Sbjct: 654 EELENALNEKEALLDEF-IEEHSNEEGLFDGLKINESVLKKELK---------------- 696
Query: 147 YQIFLNNARDSANNQITANKTESLEALNQAKTSANN-----EITANQTQALTNINEAKE- 200
NA D + QI E LEA N+A N E+ A INE K+
Sbjct: 697 ------NATDLEDKQILKTALEWLEAKNKALKMKNKAYEELELKAFHQYKNLEINEIKDL 750
Query: 201 -------NANNQITENKTQAITNINEARESATTQITTNKQEVLNSITQEKNQATSEITEA 253
N+ ENK Q TN A SA +I ++ L + +E ++ S++ E
Sbjct: 751 IIKDKWLNSLKNALENKIQKRTN---AFASALNEIISSYSNSLLELDKEVKESESKVLEH 807
Query: 254 KK 255
K
Sbjct: 808 LK 809
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 37.0 bits (84), Expect = 6e-04
Identities = 45/209 (21%), Positives = 86/209 (40%), Gaps = 17/209 (8%)
Query: 72 DSSLRNSIEWLNNAGESLKTKMKEYEGF-----FSDFNTSMRTNEQEVSATLNANTENIK 126
D ++ N I+ L+N E + +EY F T ++++ + + + +
Sbjct: 254 DVAIANLIKTLSN--EDWVAQGREYVKDNSICPFCQKETITEEFKKQLESYFDTSYQEST 311
Query: 127 SEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEALNQAKTSANNEITA 186
IKK++ T L + + NN T TE+L+ + + S +I A
Sbjct: 312 DTIKKMKEDYTNKTDEALERLDEIIKTEQ---NNSQTKLDTENLKRIIETLRS---KIKA 365
Query: 187 NQTQALTNINEAKENANNQITENKTQAITNINEARESATTQITTNKQEVLNSITQEKNQA 246
NQ + I+++KE + N ++ I I + + A QI TN E + I ++K
Sbjct: 366 NQQKM---IDKSKEMSRNFKLDSNKNEIDAIKDLIKKANEQI-TNHNETIKDIEKQKKSC 421
Query: 247 TSEITEAKKSAFNELLETLKPKFSGLFAG 275
+ + + F ++ K+ GL G
Sbjct: 422 KEQTWKFLINEFKSDIQEYNKKYCGLEKG 450
>ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori
J99]
Length = 606
Score = 37.0 bits (84), Expect = 6e-04
Identities = 23/59 (38%), Positives = 32/59 (53%), Gaps = 2/59 (3%)
Query: 198 AKENANNQITENKTQAIT-NINEARESATTQITTNKQEVLNSITQEKNQATSEITEAKK 255
AK++A Q KT+A+T NI + RE TT + E L S+ +E N S+I E K
Sbjct: 128 AKDSAQKQALAQKTEALTHNIKDTRERLTT-LQHKASEELKSVIKEVNSLGSQIAEINK 185
Score = 31.6 bits (70), Expect = 0.026
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 146 SYQIFLNNARDSANNQITANKTESL--------EALNQAKTSANNEITANQTQALTNINE 197
S++ NA+DSA Q A KTE+L E L + A+ E+ + + + ++
Sbjct: 120 SWKELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEEL-KSVIKEVNSLGS 178
Query: 198 AKENANNQITE-NKTQAITNINEARESATTQITTNKQEVLNSITQEKNQATSEITEAKKS 256
N +I E +++ + NE R+ ++ + +E+L + + T +T+ +
Sbjct: 179 QIAEINKRIKEVENNKSLKHANELRDK-RDELEFHLRELLGGNVFKSSIKTHSLTDKDSA 237
Query: 257 AFNE 260
F+E
Sbjct: 238 DFDE 241
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 35.4 bits (80), Expect = 0.002
Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 6/147 (4%)
Query: 118 LNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSAN---NQITANKTESLEALN 174
+ N+ N+ S++ + N L + L + +I NN S N + + S A
Sbjct: 474 IGVNSFNLVSQVWSVYNSLKTSEENLQKNAKILCNNGSQSGTSPCNSSSGGLSISGNAQL 533
Query: 175 QAKTSANNEITANQTQALTNINEAKENANNQITENKTQAITNINEARESATTQITTNKQE 234
Q S N T N TQA +N ++ K A + + TN N++ T +
Sbjct: 534 QNILSPTNGTTTN-TQAKSNASKLK--AMVMVNNEEEAKTTNFNQSSGPTTQSSNSTVMG 590
Query: 235 VLNSITQEKNQATSEITEAKKSAFNEL 261
LN++ Q + I A ++ N +
Sbjct: 591 ALNTVLQNVSNFQQSIQSAFQNQENNI 617
Score = 33.9 bits (76), Expect = 0.005
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 26/148 (17%)
Query: 110 NEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTES 169
N QEV A L +++ ++++E+ + +TT+ T Q L+N D+ N ++N T
Sbjct: 172 NSQEVKAQLQNTAQSMAELLQQIEHSITKTTS--TTYAQSLLSNLTDAVN--ASSNNTTY 227
Query: 170 LEALNQAKTSANNEI--TANQTQALTN-------------INEAKENANNQITENKTQAI 214
+ AL A + + T T + N + N+NNQ N T +
Sbjct: 228 VSALVNALNTLGVGVFPTTTSTHVVLNPPGQVVFYPTNSLLGSTSSNSNNQQQYNNTLLM 287
Query: 215 TNINEARESATTQITTNKQEVLNSITQE 242
+ +++TN Q N +
Sbjct: 288 NTLQ-------GELSTNNQNNPNGCANQ 308
Score = 28.5 bits (62), Expect = 0.22
Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 6/137 (4%)
Query: 101 SDFNTSMRTNEQEVSATLNAN------TENIKSEIKKLENQLIETTTRLLTSYQIFLNNA 154
S + N +E + T N N T++ S + N +++ + S Q N
Sbjct: 554 SKLKAMVMVNNEEEAKTTNFNQSSGPTTQSSNSTVMGALNTVLQNVSNFQQSIQSAFQNQ 613
Query: 155 RDSANNQITANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANNQITENKTQAI 214
++ A S NQ++ N + Q N + N Q+ + I
Sbjct: 614 ENNIQAWANALYNTSNPNGNQSQNLTTNNNQDLRIQLRANFYQLINTINQQVPTDMNALI 673
Query: 215 TNINEARESATTQITTN 231
+ ++++ + TTN
Sbjct: 674 NQSQQTQQTSGSASTTN 690
>ref|NP_224063.1| putative thiophene/furan oxidation protein [Helicobacter pylori
J99]
Length = 461
Score = 35.0 bits (79), Expect = 0.002
Identities = 32/182 (17%), Positives = 69/182 (37%), Gaps = 26/182 (14%)
Query: 82 LNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTT 141
L AGE K ++ S+ S++ E + LNA +K E+K +
Sbjct: 113 LAKAGEFSKKAFLNHKMDLSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLL 172
Query: 142 RLLTSYQIFLNNARDSANNQITANKTESLEALNQAKTSANNEITANQTQALTNINEAKEN 201
+LL S ++ ++ + + + E++ N + + + + +
Sbjct: 173 KLLASSEVLIDYSEEDIPSDFL------------------KEVSFNLEKQIASFKDLLDF 214
Query: 202 ANNQITENKTQAITNINEARESATTQITTNKQEVLNSITQEKNQATSEITEAKKSAFNEL 261
+N Q NK A++ + + K +LN++ E+ S+I + E+
Sbjct: 215 SNAQKQRNKGHALSIVGKP--------NAGKSSLLNAMLLEERALVSDIKGTTRDTIEEV 266
Query: 262 LE 263
+E
Sbjct: 267 IE 268
>ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter pylori J99]
Length = 171
Score = 34.3 bits (77), Expect = 0.004
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 61 SLDFFKNANEIDSSLRNSIEWLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNA 120
SL+ K EI + L+ S E + L+ ++ E SD N T Q+
Sbjct: 59 SLEISKRLEEIQAQLKVSKEHKKKLLKELEQAKEKAELIISDANKEAYTITQKYELQTKM 118
Query: 121 NTENIKS--------EIKKLENQLIETTTRLLTSYQIFLNNARDSAN 159
+ EN+ E+KK++ +L+E+ + L + NA+D N
Sbjct: 119 DVENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQDCVN 165
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 33.1 bits (74), Expect = 0.009
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 30/133 (22%)
Query: 126 KSEIKKLENQL---IETTTRLLTSYQIFLNNARD--SANNQITANKTESLEALNQAKTSA 180
K ++ LEN+L IETT L ++ + + A D + +N + N T+
Sbjct: 299 KKVLEILENRLKKSIETTNETLNAFNVLDSQAIDLNAISNSVGLNPTQE----------- 347
Query: 181 NNEITANQTQALTNINEAKEN-ANNQITENKTQAITNINEARESATTQITTNKQEVLNSI 239
++IT N + +N A+E A Q T+ +T +E T + TT +Q
Sbjct: 348 -SKITDNSVE----LNNAQEQTAQEQTTQEQT--------TQEQTTQEQTTQEQTTQEQT 394
Query: 240 TQEKNQATSEITE 252
TQE+ + E
Sbjct: 395 TQEQTTQEQDTQE 407
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 32.7 bits (73), Expect = 0.012
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 66 KNANEIDSSLRNSIEWLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTEN- 124
K+ +EI++++ ++ +++ ES+K ++KE E + N S+ L +++
Sbjct: 598 KSLSEIEANINILVQSISDTSESIKNQVKEVE----EINASIEALRSVTEGNLKIASDSL 653
Query: 125 -IKSEIKKLENQLIETTTR 142
I EI K+ N ++E +
Sbjct: 654 EISQEIDKVSNDILEDVNK 672
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 31.6 bits (70), Expect = 0.026
Identities = 33/152 (21%), Positives = 59/152 (38%), Gaps = 16/152 (10%)
Query: 99 FFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLEN--------QLIETTTRLLTSYQIF 150
F S + + + ++ LNA E +K +++KLE+ + ++T LL +YQ
Sbjct: 173 FLSYQHKELEHKKNQIIKRLNAQKERLKEKLEKLEDPKTLQLEAKELQTQASLLLTYQHL 232
Query: 151 LNNARDSANNQITANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANNQITENK 210
+N N++ E E + + S N+ L+ + K EN
Sbjct: 233 INR----RENRVILKDFEDKECMIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEENL 288
Query: 211 TQAI----TNINEARESATTQITTNKQEVLNS 238
+ I IN R++A + V NS
Sbjct: 289 KEKIAFKENQINYVRDAAEESVLEMFMPVKNS 320
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 31.6 bits (70), Expect = 0.026
Identities = 50/270 (18%), Positives = 104/270 (38%), Gaps = 36/270 (13%)
Query: 1 MINYPNLPNSALEITEQPEVKEITNELLKQLQNALNSNSLFSEQVELSLKGIVRILEVLL 60
+ N PNL N A IT+ + + L++ L + L ++ +K + + L+
Sbjct: 541 VFNLPNLNNLA-----------ITSVVRQDLEDKLIAKGLSPQEANKLVKDFLSSNKELV 589
Query: 61 SLDFFKNANEIDSSLRNSIEWLNNAGESLKTKMKEYEGFFSDFNTSMRT---NEQEVSAT 117
N ++ + + + A + L+ +K+ E D ++ + N+ ++ A
Sbjct: 590 GKALNFNKAVAEAKNTGNYDEVKQAQKDLEKSLKKRERLEKDVAKNLESKSGNKNKMEAK 649
Query: 118 LNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKT--ESLEALNQ 175
AN++ K EI L N+ R + Q R+ ++ NK + ++ ++
Sbjct: 650 SQANSQ--KDEIFALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDE 707
Query: 176 AKTSANNEITANQTQALTNINEAKENANNQITENKTQAITNINEARESATTQITTNKQEV 235
K N + + + K+ N +K + N+N A
Sbjct: 708 FKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVE---NLNAA--------------- 749
Query: 236 LNSITQEKNQATSEITEAKKSAFNELLETL 265
LN KN+ S++T+AK N + + +
Sbjct: 750 LNEFKNGKNKDFSKVTQAKSDLENSIKDVI 779
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 31.2 bits (69), Expect = 0.034
Identities = 38/165 (23%), Positives = 56/165 (33%), Gaps = 11/165 (6%)
Query: 57 EVLLSLDFFKNANEIDSSLRNSIEWLNNAGESLKTK------MKEYEGFFSDFNTSMRTN 110
++ L L F + +S+ WLN+ E+ K ++ + G F T N
Sbjct: 56 KIFLGLGFVSALSAQSEDYNSSVYWLNSVNENNNNKSYYISPLRTWAGGNRSF-TQNYNN 114
Query: 111 EQEVSATLNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKT--- 167
Q T NA+ S + E I T + + IF+ A S N T
Sbjct: 115 SQLYIGTKNASATPNHSSVWFGEKGYIGFITGVFKARDIFITGAVGSGNELKTGGGAILV 174
Query: 168 -ESLEALNQAKTSANNEITANQTQALTNINEAKENANNQITENKT 211
ES L N QT + I+ N N N+T
Sbjct: 175 FESSNELTTNGAYFQNNRAGTQTSWINLISNNSVNLTNTDFGNQT 219
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 31.2 bits (69), Expect = 0.034
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 8/136 (5%)
Query: 101 SDFNTSMRTNEQEVSATLNANTENIKSE----IKKLENQLIETTTRLLTSYQIFLNNARD 156
SD T+ TN +A NA++ N + + + L+ T S I+ N D
Sbjct: 2202 SDPTTASATNPC-TTAQNNASSSNASNNAPIALNNNDESLVVTANGFNFSGNIYANGVVD 2260
Query: 157 SANNQITANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANNQ--ITENKTQAI 214
+ + +AN ++L N A+ ANN +NQ N + N N Q N TQ I
Sbjct: 2261 FSKIKGSAN-VKNLYLYNNAQFQANNLTISNQAVLEKNASFVTNNLNIQGAFNNNATQKI 2319
Query: 215 TNINEARESATTQITT 230
+ ++ ++T
Sbjct: 2320 EVLQNLVIASNASLST 2335
Score = 31.2 bits (69), Expect = 0.034
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 169 SLEALNQAKTSANNEITANQTQA-LTNINEAKENANNQITENKTQAITNINEARESATTQ 227
SL +L+ K A N++T T + NINE +NANN + +N I + Q
Sbjct: 1708 SLSSLSNLKGDALNQLTKLITPSDWKNINELIDNANNSVVQNFNNGTLIIGATK---IGQ 1764
Query: 228 ITTNKQEVLNSITQEKNQATSEIT--EAKKSAFNELLETL 265
TN V + +K ++I + + + +LLE++
Sbjct: 1765 TDTNSAVVFGGLGYQKPCDYTDIVCQKFRGTYLGQLLESI 1804
Score = 30.8 bits (68), Expect = 0.044
Identities = 17/81 (20%), Positives = 36/81 (43%), Gaps = 1/81 (1%)
Query: 160 NQITANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANNQITENKTQAITNINE 219
N I ++ S+ A N + ++ N T +L N+N++ N +N T N ++ N
Sbjct: 1332 NAINLSQNASINASNHSTLELQGDLNLNDTSSL-NLNQSAINVSNNATINDYASLIASNG 1390
Query: 220 ARESATTQITTNKQEVLNSIT 240
+ + + N + S++
Sbjct: 1391 SHLNFNGAVNFNSANITTSLS 1411
Score = 23.5 bits (49), Expect = 7.1
Identities = 22/96 (22%), Positives = 32/96 (32%), Gaps = 10/96 (10%)
Query: 146 SYQIFLNNARDSANNQITANKTE---SLEALNQAKTSANNEITANQTQA-------LTNI 195
SYQ ++ S NNQ + E N A + + N + A TN
Sbjct: 824 SYQFSGDSLNFSNNNQFNSGSFEIGAKNTIFNNANFNNSTSFNFNNSSATTSFVGDFTNA 883
Query: 196 NEAKENANNQITENKTQAITNINEARESATTQITTN 231
N + A N + N T N + + I N
Sbjct: 884 NSNLQIAGNAVFGNSTNGSQNTANFNNTGSVNIAGN 919
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 29.6 bits (65), Expect = 0.098
Identities = 29/143 (20%), Positives = 53/143 (36%), Gaps = 6/143 (4%)
Query: 154 ARDSANNQITANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANNQITEN---K 210
A D + ++ + E+ A ++A S I Q + T + K Q TE K
Sbjct: 95 ADDQSKKEVAQAQKEAENARDRANKSG---IELEQEEQKTEQEKQKTEQEKQKTEQEKQK 151
Query: 211 TQAITNINEARESATTQITTNKQEVLNSITQEKNQATSEITEAKKSAFNELLETLKPKFS 270
T+ E + T+ I TN Q + Q+ Q + +K N+ + + +
Sbjct: 152 TEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQENHN 211
Query: 271 GLFAGAYYIRNVIIFKADGRRKS 293
F I+ I + + K+
Sbjct: 212 QFFIKKLGIKAGIAIEIEAECKT 234
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 28.9 bits (63), Expect = 0.17
Identities = 60/264 (22%), Positives = 104/264 (38%), Gaps = 27/264 (10%)
Query: 2 INYPNLPNSALEITEQPEVKEITNELLKQLQNALNSNSLFSEQVELSLKGIVRILEVLLS 61
I PNLP + L+I P + ++ N +K L++A+ VE+ G +RI
Sbjct: 415 IKIPNLPIN-LDI---PILLDVKNSTIKDLKDAIKERFNNEVDVEIETNGRLRI------ 464
Query: 62 LDFFKNANEIDSSLRN-SIEWLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNA 120
+D + I +L + L AG + + +F+ + +N + + A
Sbjct: 465 IDNSSKESPISFALSTLDQKGLEVAGIPTNNASEYQKTYFNKEGAKLESNVAQTAQNDAA 524
Query: 121 NTENIKSEIKK--LENQL----IETTTRLLTSYQIFLNN--ARDSANNQITANKTESLEA 172
N SE+ K LEN + + QI L+N A S N + + A
Sbjct: 525 NGSTKLSEVSKGSLENSVFNMKLNDVNGSFLEAQINLDNNGAFLSLPNGVKIPLYDPTTA 584
Query: 173 LNQAKTSANNEITANQTQALTNINEAKENAN----NQITENKT--QAITNINEARESATT 226
QA S NE+T Q +I N + QI++N T ++ E + A
Sbjct: 585 DIQA--SKPNEVTYRQLMDAMSIALNYSNTDPAIYQQISDNPTSKESKERFIELLKQAKD 642
Query: 227 QITTNKQEVLNSITQEKNQATSEI 250
++ N E I Q+ + +++
Sbjct: 643 NLSINLNEEGKVIIQDNMHSNTKM 666
Score = 24.3 bits (51), Expect = 4.1
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 33 NALNSNSLFSEQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLNNAGESLKTK 92
N + N+L S++ L L ++ S++FF I +S+R I + G++ +
Sbjct: 676 NDFSQNALHSDKPSLKLNANNALIIDKPSVNFFDQLENIITSVRKGIYRPDALGDTYSSD 735
Query: 93 MK 94
M+
Sbjct: 736 MR 737
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 28.9 bits (63), Expect = 0.17
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 183 EITANQTQALTNI-NEAKENANNQI---TENKTQAITNINEARESATTQITTNKQEVLNS 238
EI +NQ +A N+ N+A E ++ T+ + I + +A ++ + VL
Sbjct: 129 EIYSNQAKASANLMNQAWEGIKKRLHFYTDKHQEFIRRLKQASDAIDNEYNFPTPGVLLE 188
Query: 239 ITQEKNQATSEITEAKKSAFNELLETLKPKFS 270
E+ + KKS FNE L+ L+ FS
Sbjct: 189 YDFERPAISYT---PKKSVFNERLKDLRENFS 217
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 28.5 bits (62), Expect = 0.22
Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Query: 163 TANKTESLEALN-QAKTSANNEITANQTQALTNINEAKENANNQITENKTQAITNINEAR 221
T ++ L A N QA T+ N+ N + L + + + N+ +T+N + N++
Sbjct: 189 TLSQKHDLNASNIQAATTPENKNPLNASDHLA-LKTTQASINHTLTKNDAKNTANLSSVL 247
Query: 222 ESATTQITTNKQEVLNSITQEKNQATSEITEAKKSAFNELLETLKPKFSGLFA 274
+S + NK+ ++K E + ++ L KP+ + + A
Sbjct: 248 QSLEKKEPQNKEHANPPNNEKKTPPLKEALQMNAIKRDKTLSKKKPEKTPIHA 300
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 28.5 bits (62), Expect = 0.22
Identities = 26/109 (23%), Positives = 48/109 (43%), Gaps = 3/109 (2%)
Query: 164 ANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANNQITENKTQAITNINEARES 223
+ K E E L Q + + QT+ ++E K + N+ + + + N+ A+E
Sbjct: 32 SKKAELKEDLRQL-SEKEQSLRILQTENARLLDE-KSDLLNKKEKEIDEKLKNL-AAKEE 88
Query: 224 ATTQITTNKQEVLNSITQEKNQATSEITEAKKSAFNELLETLKPKFSGL 272
A + T +++ L ++ +E EI +AK S E +K S L
Sbjct: 89 AFKTLQTEEKKRLKNLIEENEGILREIKQAKDSKIGETYSKMKDSKSAL 137
Score = 24.6 bits (52), Expect = 3.2
Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 12/173 (6%)
Query: 87 ESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTS 146
ES K ++KE S+ S+R + E + L+ ++ + + K+++ +L + +
Sbjct: 31 ESKKAELKEDLRQLSEKEQSLRILQTENARLLDEKSDLLNKKEKEIDEKLKNLAAK-EEA 89
Query: 147 YQIFLNNARDSANNQITANKTESLEALNQAKTSANNEITA---NQTQALTNINEAKENAN 203
++ + N I N+ L + QAK S E + + AL N +NA
Sbjct: 90 FKTLQTEEKKRLKNLIEENE-GILREIKQAKDSKIGETYSKMKDSKSALILENLPTQNAL 148
Query: 204 NQITENKTQAITNINEARESATTQITTNKQEVLNSITQEKNQATSEITEAKKS 256
+ K Q + I ++ K L + Q+ + E E++K+
Sbjct: 149 EILMALKPQELGKI-------LAKMDPKKAAALTELWQKPPKENKENKESQKT 194
>ref|NP_222961.1| putative [Helicobacter pylori J99]
Length = 142
Score = 28.5 bits (62), Expect = 0.22
Identities = 25/116 (21%), Positives = 47/116 (39%), Gaps = 8/116 (6%)
Query: 29 KQLQNALNSNSLFSEQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLNNAGES 88
K+L+ N + +Q +LS L + F ++ S+LR IE+ GE+
Sbjct: 26 KRLELQQNEREVLDKQAQLSAFKNPE----LGGMSLFLQTQQLKSALRMEIEYYQQEGEN 81
Query: 89 LKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLL 144
L +K E + N + ++ L + K ++K E L++ +L
Sbjct: 82 LTKDLKILEKDYLLANQEL----EKAKIILEKEKQKEKEILEKKEQALLDENAMIL 133
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 28.1 bits (61), Expect = 0.29
Identities = 24/95 (25%), Positives = 40/95 (41%), Gaps = 5/95 (5%)
Query: 123 ENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEALNQAKT---- 178
+ I S+I L+ L +T +++ +S + F + I SL AL A +
Sbjct: 25 KGIHSKIPSLKQALEQTISKIKSSKEFFKQLLHNKKKLYIALGILLSLIALIVALSLLLG 84
Query: 179 -SANNEITANQTQALTNINEAKENANNQITENKTQ 212
N+ T+ QT T NE + NN E + +
Sbjct: 85 HKKENKQTSLQTNTATTNNETPNDTNNAEAEGQIE 119
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 28.1 bits (61), Expect = 0.29
Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 13/166 (7%)
Query: 121 NTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEALNQAKTSA 180
N ++ K E ++ E + SY L ++ + + + EA+ QA
Sbjct: 32 NQSRFLAQQKAFEKEVNEKRAQY-QSYFKNLEQKEEALKERAKEQQAQFDEAVKQASA-- 88
Query: 181 NNEITANQTQALTNINEAKENANNQITENKTQAITNINEARESATTQITTNKQEVLNSIT 240
A Q + I EA++NA + + K + +S Q K+ + +
Sbjct: 89 ----LALQDERAKIIEEARKNAF--LEQQKGLELLQKELDEKSKQVQELHQKEAEIERLK 142
Query: 241 QEKNQATSEITEAKKSAFNELLETLKPKFSGLFAGAYYIRNVIIFK 286
+E N+A S + + NE LE + K A + +N + FK
Sbjct: 143 RENNEAESRLKAENEKKLNEKLELEREKIE----KALHEKNELKFK 184
>ref|NP_223205.1| cag island protein [Helicobacter pylori J99]
Length = 237
Score = 28.1 bits (61), Expect = 0.29
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 123 ENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQI 162
E+I S +K+L+N ET ++L + + SANN+I
Sbjct: 21 EDITSGLKQLDNTYQETNQQVLKNLDEIFSTTSPSANNKI 60
>ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99]
Length = 620
Score = 28.1 bits (61), Expect = 0.29
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 84 NAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRL 143
N G+S + K+ G SD + E+ +A + + E + + L T +
Sbjct: 486 NTGKSQEIKISGSSGL-SDSEIEKMVKDAELHKEEDARKKEV-IEARNHADSLAHQTQKS 543
Query: 144 LTSYQIFLN-NARDSANNQITANKTESLEALNQAKTSANNEITANQTQALTNINEAKENA 202
L ++ LN N + N I A K + ++ N K ++ A TQA + EA N
Sbjct: 544 LDEHKTNLNENDANEIQNAINALK-DCIKNDNATKAELEDKTKA-LTQAAQKLGEAMANK 601
Query: 203 NN 204
NN
Sbjct: 602 NN 603
>ref|NP_223629.1| putative [Helicobacter pylori J99]
Length = 487
Score = 27.7 bits (60), Expect = 0.37
Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 161 QITANKTESLEALNQAKTSANNEIT------ANQTQALTNINEAKENANNQITENKTQAI 214
Q+ + + L+ ++AK++ +T A QT A + + K + ++ N I
Sbjct: 344 QLVSQIKDELQNFDEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGGTI 403
Query: 215 TNINEARESATTQITTNKQEVLNSITQEKNQATSEITE 252
+ +N+ + N+QE +T +ITE
Sbjct: 404 SELNQEESAKFINTLFNRQEKKGFVTIGNKVVLYQITE 441
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 27.7 bits (60), Expect = 0.37
Identities = 22/82 (26%), Positives = 35/82 (41%), Gaps = 6/82 (7%)
Query: 162 ITANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANNQITENKTQAITNINEAR 221
I+A+ TE+ + KT N+ I + Q N KEN I E +TQ N
Sbjct: 290 ISASNTENHDKTENHKTP-NHPIKEDDLQESPQENPQKENIEENIEEKETQ-----NAPS 343
Query: 222 ESATTQITTNKQEVLNSITQEK 243
S T + K ++ +++ K
Sbjct: 344 FSPLTLTSAKKPVMVKELSENK 365
>ref|NP_224183.1| FLAGELLAR HOOK-BASAL BODY COMPLEX PROTEIN [Helicobacter pylori J99]
Length = 109
Score = 26.9 bits (58), Expect = 0.64
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 14/77 (18%)
Query: 100 FSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSAN 159
FS+ NT RT +E +T E E KL Q I LNN ++ ++
Sbjct: 14 FSELNTDNRTKREESGSTFK---EQKGGEFSKLLKQSINE-----------LNNTQEQSD 59
Query: 160 NQITANKTESLEALNQA 176
+ T ++ L+QA
Sbjct: 60 KALADMATGQIKDLHQA 76
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 26.9 bits (58), Expect = 0.64
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 116 ATLNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEALNQ 175
+T+ A E + + + L N + T L + + + +N + + L
Sbjct: 173 STVIALPEGLANTMDALNNDITNALTTLWYNQTLTNKSFSTPSNTSVNFSPQVLQHLLQD 232
Query: 176 AKTSANNEITANQTQ-ALTNINEAKENANNQITENKTQAI 214
+ANN T TQ T NEAK A N +N QA+
Sbjct: 233 GLATANNNQTICSTQNQCTATNEAKSIAQN--AQNIFQAL 270
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 26.9 bits (58), Expect = 0.64
Identities = 39/175 (22%), Positives = 64/175 (36%), Gaps = 23/175 (13%)
Query: 112 QEVSATLNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLE 171
+++ L N + + KL +++ + + Q N +D+ ++ TA + L
Sbjct: 29 KDIGLELKTNFKMTPEQAGKLYKYIVDGIKEQIQANQPTKNPKQDNKDDLNTAATPKPL- 87
Query: 172 ALNQAKTSANNEITANQTQALTNINEAKENANNQITENKTQAITNI---------NEARE 222
A +KT E A T E K+ A I + K I N N +
Sbjct: 88 AKKASKTPKKEETKAQPKPKKTK--EKKKEAPAPIIKKKEIEIVNTFENQTPLVENTPKA 145
Query: 223 SATTQITTNKQ---------EVLNSITQEKNQATSEITEAK--KSAFNELLETLK 266
+ +QI KQ E LN +TQ T+ A +A E+ E K
Sbjct: 146 VSHSQIEKAKQKLQEIQKSREALNKLTQSNTNTTNNANSASNVSNAKKEISEVKK 200
>ref|NP_222874.1| putative [Helicobacter pylori J99]
Length = 157
Score = 26.9 bits (58), Expect = 0.64
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Query: 171 EALNQ----AKTSANNEITANQTQALTNINEAKENANNQITENKTQAITNINEARESATT 226
E LN+ AKT + TA +T + +N N ++N + N A+
Sbjct: 13 ETLNEIEKMAKTIDDGFNTAQKTPSFFKTPSHLQNTPN--SKNANTPLEPKNAAKIETQE 70
Query: 227 QITTNKQEVLNSITQE--KNQATSEITEAKKSAFNELLETLKPKFSGLFA 274
+IT K+E IT+E + T + ++ LLE F G+ A
Sbjct: 71 KITEEKEEAKEIITEEIVQENPTQALIPNERVFLKGLLERTLVLFKGMQA 120
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 26.9 bits (58), Expect = 0.64
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 172 ALNQAKTSANNEITANQTQALTNINEAKENANNQITENK-TQAITNINEARESATTQITT 230
A +AKT A E A ++ KEN NN+ E K +A T ++ +E+A I
Sbjct: 14 AKQEAKTEATQENKAKESN--------KENKNNKAKEGKIKEAKTKESKVKETAKEPIPV 65
Query: 231 NK 232
K
Sbjct: 66 KK 67
Score = 23.1 bits (48), Expect = 9.2
Identities = 18/83 (21%), Positives = 37/83 (43%), Gaps = 5/83 (6%)
Query: 87 ESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTS 146
++LK ++ + E N ++T E T + + + E+K+LE +L L+ +
Sbjct: 318 QTLKDRLYDLEPTSKLINELVKTME-----TTLKSGDGFEKELKRLEYKLPLFNDTLIAN 372
Query: 147 YQIFLNNARDSANNQITANKTES 169
++ L N + I A E+
Sbjct: 373 HKKILANITNMTKEDIIAQVPEA 395
>ref|NP_223739.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 511
Score = 26.6 bits (57), Expect = 0.83
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 1 MINYPNLPNSALEI-TEQPEVKEITNELLKQLQNALNSNSLFSEQVELSLKGIVRILEVL 59
+IN P N+ + + + +K + L+ NAL +N+L ++ L+LK + + +
Sbjct: 165 LINRPAYANAKVSLQADFNSLKPLEGHLILTANNALINNALINQIFHLNLKDTL-VFNLS 223
Query: 60 LSLDFFKNANEIDSSLRNSI 79
S DF N D++L + +
Sbjct: 224 HSSDFKGNKAISDTTLTSPL 243
>ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 701
Score = 26.6 bits (57), Expect = 0.83
Identities = 32/141 (22%), Positives = 60/141 (41%), Gaps = 19/141 (13%)
Query: 8 PNSALEITEQPEV----KEITNELLKQLQNALNSNSLFSEQVELSLKGIVRILEVLLSLD 63
P + E+ E+ V K+ ++L++++ + + E L +V I E +L
Sbjct: 209 PKAYFEVLEKNHVILDPKKREAKILQEIKGLEKKHDIIVEVDRDLLDEVVAITEYPTAL- 267
Query: 64 FFKNANEIDSSLRNSIEWLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTE 123
E D + +L E + T MKE + +F+ FN QE S TL+
Sbjct: 268 ----LGEFDKA------FLKLPSEIITTSMKENQRYFAIFN----QKSQEESPTLHNGFI 313
Query: 124 NIKSEIKKLENQLIETTTRLL 144
+ + I K + ++I ++L
Sbjct: 314 VVSNAISKDKQKIILGNQKVL 334
>ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 198
Score = 26.2 bits (56), Expect = 1.1
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 195 INEAKENANNQITENKTQAITNINEARESATTQITTNKQEVLNSITQ-EKNQATSE 249
+ K+N N+ + K I + + +E+A T TT+++ ++ T NQ E
Sbjct: 142 VESPKQNEKNEKNDAKENGIKGVEKNKENAKTPPTTHQKPKTHATTNAHTNQKKDE 197
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 26.2 bits (56), Expect = 1.1
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 101 SDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANN 160
S+ N +++ E+ + + I IK+ + E L S F+++ SA +
Sbjct: 78 SNCNKALKVVEELQNTIKTTIEKQIDPGIKETQEHQQEARFNLDRSTDKFISDLEKSAFS 137
Query: 161 QITANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANNQITENKTQAITNI 217
+I NQ + + E+ + + N NE KE N++ + KT+ I +I
Sbjct: 138 KI-----------NQFEFNFRKEMHERIERGIGN-NECKEIFGNELKQRKTKLIEDI 182
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 25.8 bits (55), Expect = 1.4
Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 146 SYQIFLNNARDSANNQITANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANNQ 205
++ F+N+A ++ + S + L + N+E T + +++ N+NE+ NA N
Sbjct: 28 NFIFFVNSASILEKTKLNFTDSVSSKYLFSENININDENT--EIKSINNLNESHNNAINI 85
Query: 206 ITENKTQAITNINEARESATTQITTNKQEVLNSITQEKNQATSE 249
+ A+E+A T + K + L + E + +E
Sbjct: 86 YFSTIQGLFSLFTRAKENAIT-LEDLKDQKLVFLADEAHHLNTE 128
Score = 24.3 bits (51), Expect = 4.1
Identities = 18/73 (24%), Positives = 34/73 (45%), Gaps = 1/73 (1%)
Query: 187 NQTQALTNINEAKENANNQITENKTQAITNINEARESATTQITTNKQEVLNSITQEK-NQ 245
N T ++++ EN N + ++I N+NE+ +A + Q + + T+ K N
Sbjct: 45 NFTDSVSSKYLFSENININDENTEIKSINNLNESHNNAINIYFSTIQGLFSLFTRAKENA 104
Query: 246 ATSEITEAKKSAF 258
T E + +K F
Sbjct: 105 ITLEDLKDQKLVF 117
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 25.8 bits (55), Expect = 1.4
Identities = 36/168 (21%), Positives = 66/168 (38%), Gaps = 24/168 (14%)
Query: 99 FFSDFNTS--MRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARD 156
FF F+ + M T + + +A L+ + E + + KL L YQ L+N +D
Sbjct: 9 FFLTFSNAQIMMTFDSQTNAKLSRSNEQLSDMLYKLNESL--------RIYQNVLSNNQD 60
Query: 157 SANNQITANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANNQITENKTQAITN 216
AN T +Q + ++I T AL + + + ++ +++ +
Sbjct: 61 QLKEIKKANST----LTSQRRFFNASQIRLMDTDALLKQSALELEKLQALEKHLKESMEH 116
Query: 217 INEARESATTQI---------TTNKQEVLNSI-TQEKNQATSEITEAK 254
+ES + N +E N++ QEKN A + E K
Sbjct: 117 ERLIKESQALFLQEHCPYLSGVKNLEEASNALEVQEKNNALFLLKEPK 164
>ref|NP_223162.1| putative paralog of HpaA [Helicobacter pylori J99]
Length = 282
Score = 25.8 bits (55), Expect = 1.4
Identities = 16/77 (20%), Positives = 36/77 (45%), Gaps = 6/77 (7%)
Query: 190 QALTNINEAKENANNQITENKTQAITNINEARESATTQITTNKQEVLNSITQEKNQATSE 249
QA+T + NA+ +K+ N+++ RE A +I V+ +A +E
Sbjct: 202 QAITYTYTSTNNASGGFNSSKSVIHENLDKNREDAIHKILNRMYAVV------MKKAVTE 255
Query: 250 ITEAKKSAFNELLETLK 266
+T+ + + + ++ +K
Sbjct: 256 LTKENIAKYRDAIDRMK 272
>ref|NP_223017.1| putative [Helicobacter pylori J99]
Length = 321
Score = 25.8 bits (55), Expect = 1.4
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 58 VLLSLDFFKNANEIDSSLRNSIEWLNNAGESLKTKMKEYEGFFSDFN 104
VLL+ +N + L+ I+ LN + E K +YE FFS N
Sbjct: 156 VLLTKTDLQNDSTALMKLKERIQSLNPSAEIFDKKNIDYESFFSRKN 202
>ref|NP_224138.1| glutamine fructose-6-phosphate aminotransferase [Helicobacter
pylori J99]
Length = 597
Score = 25.4 bits (54), Expect = 1.9
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 4/117 (3%)
Query: 163 TANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANNQITENKTQAITNINEARE 222
T K E+L + K N ++ T+ T+ + NA+ TEN I E
Sbjct: 47 TQGKLENLRTELKNKEFLNFGVSIAHTRWATHGKPSSANAHPHFTENLALVHNGIIENYA 106
Query: 223 SATTQITTNKQEVLNSITQEKNQATSEITEAKKSAFNELLETLKPKFSGLFAGAYYI 279
S ++ NK ++Q + + + E + +LL+ + S L G+Y I
Sbjct: 107 SLKKEL-ENKGHAF--LSQTDTEVIAHLLEETLKSEGDLLKAFEKSIS-LLKGSYAI 159
>ref|NP_222886.1| putative [Helicobacter pylori J99]
Length = 406
Score = 25.4 bits (54), Expect = 1.9
Identities = 17/78 (21%), Positives = 35/78 (44%)
Query: 120 ANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEALNQAKTS 179
++ +NI++++KKL + L+E + + N ++N +TA K L+ S
Sbjct: 39 SDNKNIRADVKKLVSILLEYNKTIACENLLNNKNEIINSNFPLTAYKNVIEYFLSHGYYS 98
Query: 180 ANNEITANQTQALTNINE 197
N N + N ++
Sbjct: 99 ENKSYYENNAKGRINFSK 116
>ref|NP_224131.1| putative [Helicobacter pylori J99]
Length = 115
Score = 25.0 bits (53), Expect = 2.4
Identities = 25/89 (28%), Positives = 33/89 (36%), Gaps = 11/89 (12%)
Query: 166 KTESLEALNQAKTSANNEITA-NQTQALTNINEAKENANNQIT-----ENKTQAITNINE 219
K S N KT+ NN+I N+ E E ++ ENK I N
Sbjct: 26 KKSSQSHQNNTKTTQNNQINQPNKDIKKIEHEEEDEKVTKEVNDLINNENKIDEINNEEN 85
Query: 220 A-----RESATTQITTNKQEVLNSITQEK 243
A R + Q TN Q+ L+S K
Sbjct: 86 ADPSQKRTNNVLQRATNHQDNLSSPLNRK 114
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 25.0 bits (53), Expect = 2.4
Identities = 13/41 (31%), Positives = 21/41 (50%)
Query: 219 EARESATTQITTNKQEVLNSITQEKNQATSEITEAKKSAFN 259
EA+E + + T K V QE++ TSE ++ A+N
Sbjct: 145 EAKEKSVPKQVTTKDIVKEKDKQEESNKTSEGATSEAQAYN 185
>ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99]
Length = 496
Score = 25.0 bits (53), Expect = 2.4
Identities = 22/62 (35%), Positives = 30/62 (47%), Gaps = 6/62 (9%)
Query: 216 NINEARESATTQITTNKQEVLNSITQEKNQATSEITEAKKSAFNELLETLKPKFSGLFAG 275
+++ RESA + T K+ S+ K + T AK +A LLE LK F GL G
Sbjct: 66 DVHLLRESACLAVRTLKKLAFKSV---KVGVYTCDTHAKDNA---LLENLKALFLGLKLG 119
Query: 276 AY 277
Y
Sbjct: 120 LY 121
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 25.0 bits (53), Expect = 2.4
Identities = 17/62 (27%), Positives = 30/62 (47%), Gaps = 11/62 (17%)
Query: 63 DFFKNANEIDSSLRNSIEWLNNAGESLKT---------KMKEYEGFFSDFNTSMRTNEQE 113
DF KN N++ S + ++I +L G++L+T K ++ S + S NE +
Sbjct: 233 DFNKNLNQVSSVINDTISYLK--GDNLETIYNTIQKTPNSKGFQSLVSRSSYSYSLNETQ 290
Query: 114 VS 115
S
Sbjct: 291 YS 292
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 25.0 bits (53), Expect = 2.4
Identities = 34/137 (24%), Positives = 51/137 (36%), Gaps = 27/137 (19%)
Query: 130 KKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEALNQAKTSANNEITANQT 189
KKL NQ +T + L F DSA Q+T T N+++T+ T
Sbjct: 167 KKL-NQAYQTIQQALKQDSGF--PVLDSAGKQVTITITTQTNGANKSETTTT---TTTTN 220
Query: 190 QALTNINEAKENANNQITE----NKTQA--------------ITNINEARESATTQITTN 231
A T + EA + + T N Q + + SA T + N
Sbjct: 221 DAQTLLQEASKMISVLTTNCPWVNHNQGQNGGAPWGLDTAGNVCQVFATEFSAVTSMIKN 280
Query: 232 KQEVL---NSITQEKNQ 245
QE++ S+ Q+ NQ
Sbjct: 281 AQEIVTQAQSLNQQNNQ 297
>ref|NP_223963.1| FUMARASE [Helicobacter pylori J99]
Length = 463
Score = 24.6 bits (52), Expect = 3.2
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 20 VKEITNELLKQLQNALNS----NSLFSEQVELSLKGIVRILEVLLSLDFFKNANEIDSSL 75
V EIT++LL L+N L + + F E V++ + + L +F A+ ++ S
Sbjct: 152 VLEITHKLLPSLENLLKTFKEKSQQFKEIVKIGRTHLQDATPLTLGQEFSGYASMLEHSK 211
Query: 76 RNSIEWLNNAGE 87
+ +E L + E
Sbjct: 212 QQILESLEHLRE 223
>ref|NP_223594.1| ALANINE RACEMASE [Helicobacter pylori J99]
Length = 377
Score = 24.6 bits (52), Expect = 3.2
Identities = 24/113 (21%), Positives = 39/113 (34%)
Query: 82 LNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTT 141
L+NA ++KT K F+ F + + E N+ I S EN+L+
Sbjct: 166 LSNADSNIKTHAKNQMKVFNAFLEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYR 225
Query: 142 RLLTSYQIFLNNARDSANNQITANKTESLEALNQAKTSANNEITANQTQALTN 194
+ Y + +N ++ I N + Q K E TN
Sbjct: 226 PGIMLYGFYPSNEMKESSQTILKNVISLKARIVQIKRVKKGEFIGYGEHFYTN 278
>ref|NP_222834.1| THREONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 612
Score = 24.6 bits (52), Expect = 3.2
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 97 EGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTSYQ 148
EGF+ DF T+ + +E+++ I++++K+ + T LT Q
Sbjct: 79 EGFYYDFKTTSKISEEDL--------PKIEAKMKEFAKSKLAITKETLTREQ 122
>ref|NP_224044.1| putative [Helicobacter pylori J99]
Length = 792
Score = 24.3 bits (51), Expect = 4.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 231 NKQEVLNSITQEKNQATSEITEAKKSAFNELLETLKPK 268
NKQ LNS T+ K++ ++ + A +L + ++PK
Sbjct: 746 NKQGRLNSPTKAKDEYYKQLYANLQYALKDLAKEIQPK 783
>ref|NP_223238.1| putative [Helicobacter pylori J99]
Length = 110
Score = 24.3 bits (51), Expect = 4.1
Identities = 21/83 (25%), Positives = 40/83 (47%), Gaps = 12/83 (14%)
Query: 43 EQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLNNAGESLKTKM-------KE 95
E+ S+K ++ E+L+ K+ ++ +L N I+ L SLKT++ E
Sbjct: 33 ERTNASMKLTLQEAEILIQ----KHQLQLQRALGN-IDILTQEMSSLKTELKALKQRNSE 87
Query: 96 YEGFFSDFNTSMRTNEQEVSATL 118
Y+G + ++ EQ++ A L
Sbjct: 88 YKGESDKYKNRIKQLEQKIEALL 110
>ref|NP_223778.1| ATP synthase F1, subunit gamma [Helicobacter pylori J99]
Length = 301
Score = 23.9 bits (50), Expect = 5.4
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 218 NEARESATTQITTNKQEVLNSITQEKNQATSEITEAKKSAFNELLETLK 266
+ AR A T N ++++ ++T N+A E + N +E LK
Sbjct: 253 HSARMQAMDTATNNAKDLVKTLTISYNKARQEAITTELVEINAGVEALK 301
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 23.9 bits (50), Expect = 5.4
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 81 WLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVS 115
W N E +K K+K Y+ ++ + N +S
Sbjct: 301 WRNKIWECIKNKVKSYDNTTAEIGIVWKKNTYSIS 335
>ref|NP_223531.1| putative [Helicobacter pylori J99]
Length = 155
Score = 23.9 bits (50), Expect = 5.4
Identities = 10/17 (58%), Positives = 13/17 (75%)
Query: 19 EVKEITNELLKQLQNAL 35
+ KE TNELLK++ N L
Sbjct: 25 QAKERTNELLKEIPNIL 41
>ref|NP_223327.1| putative [Helicobacter pylori J99]
Length = 171
Score = 23.9 bits (50), Expect = 5.4
Identities = 24/78 (30%), Positives = 37/78 (46%), Gaps = 22/78 (28%)
Query: 230 TNKQEVLNSITQEKNQATSEITEAKKSAFNELLETLKPKFSGLFA--GAYYIR------- 280
T Q++++S+T +KN+A KK + NE+L L+ G F AY+I
Sbjct: 12 TKSQKLIHSLTTQKNRAF-----LKKISANEMLLELE---KGAFKKNEAYFISDEEDKNY 63
Query: 281 -----NVIIFKADGRRKS 293
NVI A+ RK+
Sbjct: 64 VLVPDNVISLLAENARKA 81
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 23.9 bits (50), Expect = 5.4
Identities = 12/77 (15%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 66 KNANEIDSSLRNSIEWLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENI 125
K+ +EI++++ ++ + + ES+K + K E + N + + + + T+ ++ +
Sbjct: 596 KSLSEIEANINILVQSIADNAESIKMQNKGVENIHNSINALQQ--DVQDNLTIANHSLQV 653
Query: 126 KSEIKKLENQLIETTTR 142
++I + ++E ++
Sbjct: 654 STKIDGISQDILEDVSK 670
>ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrophosphorylase
[Helicobacter pylori J99]
Length = 470
Score = 23.9 bits (50), Expect = 5.4
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 183 EITANQTQALTNINE----AKENANNQITENKTQAITNINE 219
E AN T+ ++N+ AKE+ NN + +K A+ + +
Sbjct: 275 EEAANGTKENVSLNQTPIFAKESTNNLVFSHKVSALLGVED 315
>ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Helicobacter pylori J99]
Length = 457
Score = 23.5 bits (49), Expect = 7.1
Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 33 NALNSNSLFSEQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLNNAGESLKTK 92
NA+ +++L + + + + + L LD KN + R+ +L + + L+ K
Sbjct: 161 NAIGNHALEKHKKVVLVTSEDFLTDFLKHLDN-KNMDSFKKKYRHCDFFLLDDAQFLQGK 219
Query: 93 MKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQ 135
K E FF FN + N +++ + + +NI +L+++
Sbjct: 220 PKLEEEFFHTFN-ELHANSKQIVLISDRSPKNIAGLEDRLKSR 261
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 23.5 bits (49), Expect = 7.1
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 201 NANNQITENKTQAITNINEARESATTQITTNKQEVLNSITQEKNQATSE 249
N NN+ EN ++ + +EAR A + T K+ + + + E
Sbjct: 5 NQNNENHENSSENSKDHHEARAGAFERFTNRKKRFRENAQKNAESSNHE 53
>ref|NP_223943.1| putative 30S RIBOSOMAL PROTEIN S8 [Helicobacter pylori J99]
Length = 131
Score = 23.5 bits (49), Expect = 7.1
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 20 VKEITNELLKQLQNALNSNSLFSEQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSI 79
V +I + L +L+NA F++ + +V ILE+ F K+ N D + S+
Sbjct: 2 VNDIIADSLTRLRNASMRRLEFTQLYYAKI--VVSILEIFKEKGFIKDFNVKDKDKKQSV 59
>ref|NP_223859.1| putative ABC transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 228
Score = 23.5 bits (49), Expect = 7.1
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 24/107 (22%)
Query: 45 VELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLNNAGESLKTKMKE------YEG 98
+ L+ +G V+IL + ++ + S+ +L++ G+ L K+ Y+
Sbjct: 51 LNLNYQGEVKILNQKIGIE-----------TKKSVAFLSD-GDFLDPKLTPLKAIAFYKD 98
Query: 99 FFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLT 145
FFSDF+ S N L + +K E K L + E +LT
Sbjct: 99 FFSDFDESKALN------LLKRFSVPLKREFKALSKGMREKLQLILT 139
>ref|NP_223567.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 527
Score = 23.5 bits (49), Expect = 7.1
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 100 FSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSAN 159
F+ N + +E ++ + N ++ + N I +T SY ++ AR +
Sbjct: 264 FNSANAGNDLSAKEFTSLVQNIVNNSQNALTLANNANISNSTGYQVSYGGNIDQARSTQL 323
Query: 160 NQITANKTESLEALNQAKTSANNEITAN 187
T N + AL NNE+ AN
Sbjct: 324 LNNTTNTLAKVTAL-------NNELKAN 344
>ref|NP_223463.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 183
Score = 23.5 bits (49), Expect = 7.1
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 194 NINEAKENANNQITENKTQAITNIN-EARESATTQ 227
N E+KENA+ E + + N N EA+E + Q
Sbjct: 44 NKEESKENASKNTQEVQANPMANKNQEAKEGSNIQ 78
>ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99]
Length = 402
Score = 23.5 bits (49), Expect = 7.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 35 LNSNSLFSEQVELSLKGIVRILE 57
L SN+L +E EL LK R+LE
Sbjct: 43 LTSNALVNESKELLLKHDFRVLE 65
>ref|NP_223209.1| cag island protein [Helicobacter pylori J99]
Length = 268
Score = 23.5 bits (49), Expect = 7.1
Identities = 21/109 (19%), Positives = 48/109 (43%), Gaps = 14/109 (12%)
Query: 27 LLKQLQNALNSNSLFSEQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLNNAG 86
+L+ L+ +N+N SE ++ ++ +FF AN ++ ++N I N+A
Sbjct: 169 ILRLLEKPINNN--ISEDMQSDIE------------NFFVQANFLEYYVQNKIYPTNHAY 214
Query: 87 ESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQ 135
+ M + + S+ ++E+ N + + +++ ENQ
Sbjct: 215 DFTHLIMDSIIPNWIQIDMSVEAKKKELFEKYFQNIDEVTNKMLDQENQ 263
>ref|NP_222997.1| putative [Helicobacter pylori J99]
Length = 100
Score = 23.5 bits (49), Expect = 7.1
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 118 LNANTENIKSEIKKLENQLIE-TTTRLLTSYQIFLNNARDSANNQITANKTES--LEALN 174
L++ EN+++EI L+N+L + RL + +I L N I K E L+ L+
Sbjct: 5 LDSLLENLRAEIDALDNELSDLLDKRLGIALKIALIKQESPQENPIYCPKREQEILKRLS 64
Query: 175 Q-AKTSANNEITAN 187
Q N EI A+
Sbjct: 65 QRGFKHLNGEILAS 78
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 23.5 bits (49), Expect = 7.1
Identities = 13/45 (28%), Positives = 21/45 (45%)
Query: 151 LNNARDSANNQITANKTESLEALNQAKTSANNEITANQTQALTNI 195
L D+A + AN T +L A K + A++ QA+ N+
Sbjct: 718 LTGGEDTAYKMLKANPTLALSAETGGKNATIVSKMADRDQAIKNV 762
>ref|NP_222743.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 690
Score = 23.5 bits (49), Expect = 7.1
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 24 TNELLKQLQNALNSNSLFSEQ-VELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWL 82
TN LK N N N+ + E+ K ++L + A+ I ++L ++ W+
Sbjct: 202 TNTELKFTINKNNGNTNTNNNGEEIVTKNNAQVL--------LEQASTIITTLNSACPWI 253
Query: 83 NNAGESLKTKMKEYEGFF 100
NN G + +EG +
Sbjct: 254 NNGGAGGASSGSLWEGIY 271
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 23.1 bits (48), Expect = 9.2
Identities = 23/111 (20%), Positives = 49/111 (43%), Gaps = 17/111 (15%)
Query: 65 FKNANEIDSSL-RNSIEWLNNAGESLKTKMKEY-------EGFFSDFNTSMRTNEQEVSA 116
++N ++DS + +++IE N+ + K+ + + DF + N+++V
Sbjct: 849 YENFMQVDSEIEKDTIEESNDTKIIVFGKLPRVKIPIGLNQTYSPDFGYVVENNDKKVLL 908
Query: 117 TLNANTENIKSEIKKLENQLIETTTRLLTS---------YQIFLNNARDSA 158
+ + KSE++ E + I T + + Y+ LNN + SA
Sbjct: 909 VVETKGVDKKSELRPEEKRKISTAKKFFEALKKQGVNIEYKTKLNNDQLSA 959
>ref|NP_224034.1| DNA transfer protein [Helicobacter pylori J99]
Length = 304
Score = 23.1 bits (48), Expect = 9.2
Identities = 19/96 (19%), Positives = 40/96 (40%), Gaps = 24/96 (25%)
Query: 145 TSYQIFLNNARDSANNQITAN----------------KTESLEALNQAKTSANNEITANQ 188
T Y++ N+ + NNQIT N K + E+L +N + + +
Sbjct: 87 TRYRVSANHFSITTNNQITLNIRVPRLKPLSLEDFTFKVSNPESLKNLALKGHNILISGE 146
Query: 189 TQALTNINEAKENANNQITE--NKTQAITNINEARE 222
T + K + N + + NK + + ++ +++E
Sbjct: 147 T------SSGKTSLLNALLDCVNKDERVVSVEDSQE 176
>ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter
pylori J99]
Length = 788
Score = 23.1 bits (48), Expect = 9.2
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 43 EQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLNNAGES 88
E ++ + +VR+L+ ++ L+F+ N ++L+N L GE+
Sbjct: 511 EDIKRVVPIMVRLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEA 556
>ref|NP_223270.1| putative [Helicobacter pylori J99]
Length = 477
Score = 23.1 bits (48), Expect = 9.2
Identities = 36/166 (21%), Positives = 65/166 (38%), Gaps = 22/166 (13%)
Query: 112 QEVSATLNANTENIKSEIKKLENQLIE-----TTTRLLTSYQIFLNNARDSANNQITANK 166
+E + T+N + K L E TT L + ++ + A + T K
Sbjct: 63 KETATTINQEIAKYHEKSDKAALGLYELLKGATTNLSLQAQELSVKQAMKNH----TIAK 118
Query: 167 TESLEALNQAKTSANNEITANQTQALTNINEAKENANNQITENKTQAITNINEARESATT 226
L LN S N + A T + N + A Q+T N +N+N +E + T
Sbjct: 119 AMFLPTLN---ASYNFKNEARDTPEYKHYNTQQLQA--QVTLNVFNGFSNVNNVKEKSAT 173
Query: 227 QITT------NKQEVLNSITQEKNQATSEITEAKKSAFNELLETLK 266
+T ++Q V + Q+ + + + A+ A + LE ++
Sbjct: 174 YRSTVANLEYSRQSVYLQVVQQYYEYFNNL--ARMIALQKKLEQIQ 217
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.306 0.122 0.307
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 287,657
Number of Sequences: 1491
Number of extensions: 13144
Number of successful extensions: 161
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 98
length of query: 295
length of database: 494,079
effective HSP length: 77
effective length of query: 218
effective length of database: 379,272
effective search space: 82681296
effective search space used: 82681296
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 48 (23.1 bits)