BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645118|ref|NP_207288.1| ribosomal protein L28
(rpL28) [Helicobacter pylori 26695]
(62 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223161.1| 50S RIBOSOMAL PROTEIN L28 [Helicobacter py... 125 1e-31
ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME ... 22 2.6
ref|NP_223271.1| putative efflux transporter [Helicobacter ... 22 2.6
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 21 5.8
ref|NP_223088.1| putative [Helicobacter pylori J99] 20 7.6
ref|NP_222796.1| putative [Helicobacter pylori J99] 20 7.6
>ref|NP_223161.1| 50S RIBOSOMAL PROTEIN L28 [Helicobacter pylori J99]
Length = 62
Score = 125 bits (315), Expect = 1e-31
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 1 MAKRCALTFKGPMIGNHVSHANNKNKRRLLPNLRSIKIQLDDGTTKRIKVAASTLRTMRK 60
MAKRCALTFKGPMIGNHVSHANNKNKRRLLPNLRSIKIQLDDGTTKRIKVAASTLRTMRK
Sbjct: 1 MAKRCALTFKGPMIGNHVSHANNKNKRRLLPNLRSIKIQLDDGTTKRIKVAASTLRTMRK 60
Query: 61 GA 62
GA
Sbjct: 61 GA 62
>ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 620
Score = 21.9 bits (45), Expect = 2.6
Identities = 15/48 (31%), Positives = 24/48 (49%), Gaps = 4/48 (8%)
Query: 18 VSHANNKNKRRLLPNLRSIKIQLDD----GTTKRIKVAASTLRTMRKG 61
+ + N N R+ + + +LDD GTT IK ++R +RKG
Sbjct: 351 IVNKTNSNMVRINAKFKWTQDKLDDEIKEGTTFVIKSDEFSMRYIRKG 398
>ref|NP_223271.1| putative efflux transporter [Helicobacter pylori J99]
Length = 234
Score = 21.9 bits (45), Expect = 2.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 10 KGPMIGNHVSHANNKNKRRLLPNLRSIKIQLDDGTTKRIKV 50
K +G VS ANN RL+ + R + I+ D +KV
Sbjct: 139 KNIQVGEGVS-ANNTVLLRLVSHARKLVIEFDSKYINAVKV 178
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 20.8 bits (42), Expect = 5.8
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 13 MIGNHVSHANNKNKRRLLPNLR 34
+ H N +K +LLPNL+
Sbjct: 410 LFDGHYKILGNDDKDKLLPNLK 431
>ref|NP_223088.1| putative [Helicobacter pylori J99]
Length = 289
Score = 20.4 bits (41), Expect = 7.6
Identities = 12/35 (34%), Positives = 20/35 (56%)
Query: 1 MAKRCALTFKGPMIGNHVSHANNKNKRRLLPNLRS 35
MAK + F G ++G+ +AN K LL N+++
Sbjct: 107 MAKNKSGFFIGVILGDIGINANPYEKFELLSNIQA 141
>ref|NP_222796.1| putative [Helicobacter pylori J99]
Length = 590
Score = 20.4 bits (41), Expect = 7.6
Identities = 8/28 (28%), Positives = 16/28 (56%)
Query: 7 LTFKGPMIGNHVSHANNKNKRRLLPNLR 34
+ F ++GN +HA+ + +L NL+
Sbjct: 77 MRFNSGILGNFRAHAHLRQALKLQKNLK 104
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.132 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,413
Number of Sequences: 1491
Number of extensions: 1739
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 62
length of database: 494,079
effective HSP length: 38
effective length of query: 24
effective length of database: 437,421
effective search space: 10498104
effective search space used: 10498104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 40 (20.0 bits)