BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645122|ref|NP_207292.1| hypothetical protein
[Helicobacter pylori 26695]
(86 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223165.1| putative [Helicobacter pylori J99] 153 7e-40
ref|NP_223859.1| putative ABC transporter, ATP-binding prot... 28 0.044
ref|NP_222747.1| DETHIOBIOTIN SYNTHETASE [Helicobacter pylo... 25 0.22
ref|NP_223787.1| putative [Helicobacter pylori J99] 25 0.37
ref|NP_223170.1| DNA POLYMERASE III, BETA CHAIN [Helicobact... 23 0.82
ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Hel... 23 0.82
ref|NP_223440.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 23 1.1
ref|NP_223205.1| cag island protein [Helicobacter pylori J99] 23 1.1
ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN ... 23 1.4
ref|NP_223617.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_223463.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 22 1.8
ref|NP_223160.1| PUTATIVE POTASSIUM CHANNEL PROTEIN [Helico... 22 2.4
ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helic... 22 2.4
ref|NP_223026.1| putative ENDONUCLEASE [Helicobacter pylori... 22 2.4
ref|NP_223881.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 22 3.1
ref|NP_223578.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_224185.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicoba... 21 4.1
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 21 4.1
ref|NP_224110.1| putative [Helicobacter pylori J99] 21 4.1
ref|NP_223335.1| INTEGRASE-RECOMBINASE PROTEIN (XERCD FAMIL... 21 4.1
ref|NP_223101.1| putative [Helicobacter pylori J99] 21 4.1
ref|NP_223750.1| putative [Helicobacter pylori J99] 21 5.3
ref|NP_223651.1| putative [Helicobacter pylori J99] 21 5.3
ref|NP_223402.1| putative [Helicobacter pylori J99] 21 5.3
ref|NP_223361.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 21 5.3
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 21 5.3
ref|NP_222959.1| putative Outer membrane protein [Helicobac... 21 5.3
ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori... 20 9.1
ref|NP_223904.1| putative NADH oxidoreductase I [Helicobact... 20 9.1
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 20 9.1
ref|NP_223741.1| putative [Helicobacter pylori J99] 20 9.1
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 20 9.1
ref|NP_223260.1| putative [Helicobacter pylori J99] 20 9.1
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 20 9.1
ref|NP_223065.1| putative [Helicobacter pylori J99] 20 9.1
>ref|NP_223165.1| putative [Helicobacter pylori J99]
Length = 86
Score = 153 bits (386), Expect = 7e-40
Identities = 74/86 (86%), Positives = 78/86 (90%)
Query: 1 MPSDSKKPTIIYPCLWDYRVIMTTKDTSTLKELLETYQRPFKLEFKNTSKNAKFYSFNVS 60
MPSD +KPTIIYPC+WDYRVIMTT DTS LKELLETYQRPFKLE KNTSKNAKFYSFNVS
Sbjct: 1 MPSDLEKPTIIYPCVWDYRVIMTTNDTSVLKELLETYQRPFKLELKNTSKNAKFYSFNVS 60
Query: 61 MEVSNESERNEIFQKISQLDKVVQTL 86
MEVSNE+ERNEIFQKISQL+ V L
Sbjct: 61 MEVSNEAERNEIFQKISQLEVVAHAL 86
>ref|NP_223859.1| putative ABC transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 228
Score = 27.7 bits (60), Expect = 0.044
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 18 YRVIMTTKDTSTLKELLETYQRPFKLEFKNTSK--------------NAKFYSFNVSMEV 63
Y+ + D S LL+ + P K EFK SK NA Y F+ +
Sbjct: 96 YKDFFSDFDESKALNLLKRFSVPLKREFKALSKGMREKLQLILTLSRNASLYLFDEPVAG 155
Query: 64 SNESERNEIFQKISQ 78
+ R EIF+ I++
Sbjct: 156 IDPIAREEIFELIAK 170
>ref|NP_222747.1| DETHIOBIOTIN SYNTHETASE [Helicobacter pylori J99]
Length = 218
Score = 25.4 bits (54), Expect = 0.22
Identities = 13/41 (31%), Positives = 22/41 (52%), Gaps = 1/41 (2%)
Query: 33 LLETYQRPFKLEFKNTSKNAKFYSFNVS-MEVSNESERNEI 72
LL++YQ +K+ N FYS ++ +E+ N+ N I
Sbjct: 162 LLKSYQLDYKIAINLRGNNTAFYSVSLPYIELFNKRSNNPI 202
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 24.6 bits (52), Expect = 0.37
Identities = 16/61 (26%), Positives = 30/61 (48%), Gaps = 1/61 (1%)
Query: 23 TTKDTSTLKELLETYQRPFKLEFKNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKV 82
T DT LK ++ET + K + +K S N ++ SN++E + I I + ++
Sbjct: 345 TKLDTENLKRIIETLRSKIKANQQKMIDKSKEMSRNFKLD-SNKNEIDAIKDLIKKANEQ 403
Query: 83 V 83
+
Sbjct: 404 I 404
Score = 21.6 bits (44), Expect = 3.1
Identities = 11/35 (31%), Positives = 19/35 (53%), Gaps = 5/35 (14%)
Query: 20 VIMTTKDTSTLKELLETYQRPFKLEFKNTSKNAKF 54
+ + ++DTS +ETY + F+ FK T A +
Sbjct: 723 LFVQSQDTS-----IETYLKVFEKTFKETGHEAHY 752
>ref|NP_223170.1| DNA POLYMERASE III, BETA CHAIN [Helicobacter pylori J99]
Length = 374
Score = 23.5 bits (49), Expect = 0.82
Identities = 21/76 (27%), Positives = 38/76 (49%), Gaps = 6/76 (7%)
Query: 4 DSKKPTIIYPCLWDYRVIMTTKDTSTLKELLETYQRPFKLEFKNTSKNAKFYSFN--VSM 61
+ KK I CL D +++ TKD S +++ + FKL + + +F + VS+
Sbjct: 71 NGKKFLDIISCLKDSNIVLETKDDSL---VIKQNKSSFKLPMFDADEFPEFPVIDPKVSL 127
Query: 62 EVSNESERNEIFQKIS 77
E+ N + F+KI+
Sbjct: 128 EI-NAPFLVDAFKKIA 142
>ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Helicobacter pylori J99]
Length = 363
Score = 23.5 bits (49), Expect = 0.82
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 23 TTKDTSTLKELLETYQRPFKLEFKNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKV 82
T K+ L LLETYQ+ KN S + F ++ S+E + ++++ L+
Sbjct: 55 TNKEKVRLNRLLETYQK-----MKN-SLDESVELFELAQNDSDEVTLSLLYEEAPTLEHS 108
Query: 83 VQ 84
VQ
Sbjct: 109 VQ 110
>ref|NP_223440.1| putative [Helicobacter pylori J99]
Length = 184
Score = 23.1 bits (48), Expect = 1.1
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 39 RPFKLEFKNTSKNAKFYSFNVSMEVSNESERNEIF 73
+PF LEFK+ N +F S N NEIF
Sbjct: 138 KPFSLEFKDDMNNLVTITF--SQAEINPKIPNEIF 170
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 23.1 bits (48), Expect = 1.1
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 48 TSKNAKFYSFNVSMEVSNESERNEIFQKISQL 79
+SKN +E NE N++ KIS +
Sbjct: 82 SSKNVSIVVIEFELEKPNEEALNDVVNKISSV 113
>ref|NP_223205.1| cag island protein [Helicobacter pylori J99]
Length = 237
Score = 23.1 bits (48), Expect = 1.1
Identities = 15/51 (29%), Positives = 23/51 (44%)
Query: 20 VIMTTKDTSTLKELLETYQRPFKLEFKNTSKNAKFYSFNVSMEVSNESERN 70
V+M TS LK+L TYQ + KN + S + + ++ E N
Sbjct: 17 VLMAEDITSGLKQLDNTYQETNQQVLKNLDEIFSTTSPSANNKIGQEDALN 67
>ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Helicobacter pylori J99]
Length = 457
Score = 22.7 bits (47), Expect = 1.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 24 TKDTSTLKELLETYQRPFKLEFKNTSKNAKFYSFNVSMEVSNESE 68
+K S++K++LE + PF L + KN + N N SE
Sbjct: 414 SKMYSSVKKMLEEEKSPFILSLREEIKN-RLNELNDKKTAFNSSE 457
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 22.7 bits (47), Expect = 1.4
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 43 LEFKNT-SKNAKFYSFNVSMEVSNESERNE 71
L++ NT S +FYS E+ NE E+ E
Sbjct: 96 LKYANTLSAEVEFYSLKDIAELENEHEKYE 125
>ref|NP_223463.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 183
Score = 22.3 bits (46), Expect = 1.8
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 49 SKNAKFY-SFNVSMEVSNESERNEIFQKISQL-DKVVQTL 86
S+N + Y ++S+E+SNE NE+ K + + D +++ L
Sbjct: 99 SQNGRRYLKASISLELSNEKLLNEVKVKDTAIKDTIIEIL 138
>ref|NP_223160.1| PUTATIVE POTASSIUM CHANNEL PROTEIN [Helicobacter pylori J99]
Length = 378
Score = 21.9 bits (45), Expect = 2.4
Identities = 6/26 (23%), Positives = 20/26 (76%)
Query: 20 VIMTTKDTSTLKELLETYQRPFKLEF 45
++ T++ +T K+L+ ++Q+P ++++
Sbjct: 350 MVGTSEGVATCKQLITSHQKPKEVDY 375
>ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helicobacter pylori J99]
Length = 258
Score = 21.9 bits (45), Expect = 2.4
Identities = 15/57 (26%), Positives = 24/57 (41%), Gaps = 3/57 (5%)
Query: 25 KDTSTLKELLETYQRPFKL---EFKNTSKNAKFYSFNVSMEVSNESERNEIFQKISQ 78
K T L L Q F+ E K +NAK + + + E RNE+ +++
Sbjct: 66 KKTDELSSHLVKLQMQFEKAQEESKVLIENAKNDGYKIGFKEGEEKMRNELTHSVNE 122
>ref|NP_223026.1| putative ENDONUCLEASE [Helicobacter pylori J99]
Length = 180
Score = 21.9 bits (45), Expect = 2.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 17 DYRVIMTTKDTSTLKELLETYQR 39
+Y V++ T DT T+ + YQ+
Sbjct: 150 NYEVLLKTDDTETILKAKSYYQK 172
>ref|NP_223881.1| putative [Helicobacter pylori J99]
Length = 76
Score = 21.6 bits (44), Expect = 3.1
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 54 FYSFN--VSMEVSNESERNEIFQKISQLDKVVQT 85
F+ F +S+ +N ++IF+K +QLD ++T
Sbjct: 2 FHEFRDEISVLKANNPHFDKIFEKHNQLDDDIKT 35
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 21.6 bits (44), Expect = 3.1
Identities = 10/38 (26%), Positives = 21/38 (54%)
Query: 29 TLKELLETYQRPFKLEFKNTSKNAKFYSFNVSMEVSNE 66
T ++ L+ YQ F+ ++ KNA + ++ ++ NE
Sbjct: 362 TNQDALKLYQLIFERTIESQGKNAIYDKQDLLFKIKNE 399
>ref|NP_223578.1| putative [Helicobacter pylori J99]
Length = 381
Score = 21.6 bits (44), Expect = 3.1
Identities = 11/42 (26%), Positives = 21/42 (49%)
Query: 28 STLKELLETYQRPFKLEFKNTSKNAKFYSFNVSMEVSNESER 69
S + L+ PFK+ + ++ + F ++E+ ESER
Sbjct: 243 SNALKALKNQAHPFKILEGDVMRHYPYGKFFDALELEKESER 284
>ref|NP_224185.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicobacter pylori J99]
Length = 140
Score = 21.2 bits (43), Expect = 4.1
Identities = 12/51 (23%), Positives = 23/51 (44%)
Query: 31 KELLETYQRPFKLEFKNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDK 81
K L + P L+F+N++KN F N+ ++ + S++ K
Sbjct: 61 KVLPLAHTNPRHLDFENSTKNGASLFFRDGHLAKNDGNSVDLDIETSEMGK 111
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 21.2 bits (43), Expect = 4.1
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 30 LKELLETY--QRPFKLEFKNTSKNAKFYSFNVSMEVSNESERNEI 72
LK ++ Y Q P K +N K NV + E ++NEI
Sbjct: 8 LKVFIKKYNPQEPKKETIENFEKEINSLLENVPRQDDEEFQKNEI 52
>ref|NP_224110.1| putative [Helicobacter pylori J99]
Length = 306
Score = 21.2 bits (43), Expect = 4.1
Identities = 11/39 (28%), Positives = 18/39 (45%)
Query: 31 KELLETYQRPFKLEFKNTSKNAKFYSFNVSMEVSNESER 69
+E LE+Y F KN K +K S ++ + E+
Sbjct: 169 EEYLESYDEVFSAIIKNEQKVSKDKSIQEKIKKIEKQEK 207
>ref|NP_223335.1| INTEGRASE-RECOMBINASE PROTEIN (XERCD FAMILY) [Helicobacter pylori
J99]
Length = 356
Score = 21.2 bits (43), Expect = 4.1
Identities = 12/49 (24%), Positives = 32/49 (64%), Gaps = 5/49 (10%)
Query: 43 LEFKNTSKNAKFYSFNVSME-VS--NESERNEIFQKIS--QLDKVVQTL 86
++ +N KN K Y +N++++ +S N+S N++ ++ +L+K ++++
Sbjct: 133 IDKQNQDKNEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLESI 181
>ref|NP_223101.1| putative [Helicobacter pylori J99]
Length = 347
Score = 21.2 bits (43), Expect = 4.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 10 IIYPCLWDYRVIMTTKDTSTLKELLE 35
I+Y L Y I+ +K+T L+ L+E
Sbjct: 120 IVYEFLKKYYAILESKNTLWLEPLVE 145
>ref|NP_223750.1| putative [Helicobacter pylori J99]
Length = 435
Score = 20.8 bits (42), Expect = 5.3
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 17 DYRVIMTTKDTSTLKELLETYQRPFKLEFKNTSKNAKFYS 56
D++ +M D + ++ Q + + + + KNA+FY+
Sbjct: 278 DFKNLMPYMDNIFMTFGTQSSQTHYCVRYASECKNARFYN 317
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 20.8 bits (42), Expect = 5.3
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 43 LEFKNTSKNAKFYSFNVSMEVSNESERNEIFQK 75
LE+ N K + +++ + + ES+ E+F +
Sbjct: 214 LEWLNEEKEDRLFNYYLFLNGIKESDVEEVFNE 246
>ref|NP_223402.1| putative [Helicobacter pylori J99]
Length = 400
Score = 20.8 bits (42), Expect = 5.3
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 30 LKELLETYQRPFKLEFKNTSKNAKFYSFNVSMEV 63
LK+ L Y + F++ N +N+K S ++++
Sbjct: 74 LKQALRIYSQSFEVISHNLQENSKHASQKKALDL 107
>ref|NP_223361.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 381
Score = 20.8 bits (42), Expect = 5.3
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 30 LKELLETYQRPFKLEFKNTSKNAKFYSFNVSM-EVSNESERNEIFQKISQLDK 81
LKE+ E Y K KN +K YS++ ++ E+ ER I + +++ +
Sbjct: 322 LKEVCEAYHLGPKSFSKNAAKRLLEYSWHGNVRELLGVVERAAILSEETEIQE 374
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 20.8 bits (42), Expect = 5.3
Identities = 10/22 (45%), Positives = 13/22 (58%)
Query: 43 LEFKNTSKNAKFYSFNVSMEVS 64
L F N S N+ YSFN + V+
Sbjct: 1137 LIFNNNSFNSGSYSFNDTKNVT 1158
>ref|NP_222959.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 20.8 bits (42), Expect = 5.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 22 MTTKDTSTLKELLETYQRPFK 42
M KD T+ + + TYQ K
Sbjct: 251 MLQKDVKTISDRIATYQENLK 271
>ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 415
Score = 20.0 bits (40), Expect = 9.1
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 25 KDTSTLKELLETYQRPFKLEFKNTSKNAKFYSFNVS 60
++ S++ + R K+ FK KN ++ N S
Sbjct: 348 REISSVSNTRDFQARRAKIRFKENQKNQLVHTLNGS 383
>ref|NP_223904.1| putative NADH oxidoreductase I [Helicobacter pylori J99]
Length = 328
Score = 20.0 bits (40), Expect = 9.1
Identities = 11/38 (28%), Positives = 18/38 (46%)
Query: 29 TLKELLETYQRPFKLEFKNTSKNAKFYSFNVSMEVSNE 66
+LK ++ + FK+ K AKF N ++E E
Sbjct: 258 SLKTPKLSFSKQFKIANKIKHSKAKFQILNQTLECELE 295
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 20.0 bits (40), Expect = 9.1
Identities = 11/43 (25%), Positives = 20/43 (45%)
Query: 33 LLETYQRPFKLEFKNTSKNAKFYSFNVSMEVSNESERNEIFQK 75
LL+T + FKN K+ N+ E+ + E + + +K
Sbjct: 174 LLDTADQESVENFKNARKDLIEGVLNLRKEILKDKELHALIKK 216
>ref|NP_223741.1| putative [Helicobacter pylori J99]
Length = 290
Score = 20.0 bits (40), Expect = 9.1
Identities = 13/45 (28%), Positives = 18/45 (39%)
Query: 31 KELLETYQRPFKLEFKNTSKNAKFYSFNVSMEVSNESERNEIFQK 75
KE L Y + +LE N +N NE + E F+K
Sbjct: 226 KEALARYSKACELENGGGCFNLGAMQYNGEGATRNEKQAIENFKK 270
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 20.0 bits (40), Expect = 9.1
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 43 LEFKNTSKNAKFYSFNVSMEVSNESERNE 71
L F N++ N Y FN + S N+
Sbjct: 274 LSFNNSNFNQGTYHFNSAQSTFENSNFNQ 302
>ref|NP_223260.1| putative [Helicobacter pylori J99]
Length = 490
Score = 20.0 bits (40), Expect = 9.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 39 RPFKLEFKNTSKNAKFYSF 57
+PFK NT + + FY F
Sbjct: 134 QPFKDRLLNTLQKSAFYVF 152
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT
ANTIGEN [Helicobacter pylori J99]
Length = 1167
Score = 20.0 bits (40), Expect = 9.1
Identities = 7/15 (46%), Positives = 11/15 (72%)
Query: 65 NESERNEIFQKISQL 79
N+ + + F+KISQL
Sbjct: 50 NDRDNRQAFEKISQL 64
>ref|NP_223065.1| putative [Helicobacter pylori J99]
Length = 381
Score = 20.0 bits (40), Expect = 9.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 33 LLETYQRPFKLEFKNTSKNAKFYSFNVSMEV 63
+LE Y K + SKN FY + ++
Sbjct: 56 VLEIYDNIRKEPLTSESKNLMFYGLDTEKKI 86
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.129 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,390
Number of Sequences: 1491
Number of extensions: 3284
Number of successful extensions: 39
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of query: 86
length of database: 494,079
effective HSP length: 62
effective length of query: 24
effective length of database: 401,637
effective search space: 9639288
effective search space used: 9639288
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 40 (20.0 bits)