BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645123|ref|NP_207293.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(133 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223166.1| putative [Helicobacter pylori J99] 265 2e-73
ref|NP_223546.1| putative [Helicobacter pylori J99] 24 1.3
ref|NP_222872.1| putative histidine kinase sensor protein [... 24 1.3
ref|NP_223733.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BET... 23 2.1
ref|NP_223403.1| putative abc transporter, ATP-binding prot... 23 2.8
ref|NP_223457.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_223643.1| putative [Helicobacter pylori J99] 22 4.8
ref|NP_223040.1| putative [Helicobacter pylori J99] 22 4.8
ref|NP_224029.1| lipopolysaccharide biosynthesis protein [H... 22 6.2
ref|NP_224021.1| putative [Helicobacter pylori J99] 22 8.1
ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Heli... 22 8.1
>ref|NP_223166.1| putative [Helicobacter pylori J99]
Length = 133
Score = 265 bits (678), Expect = 2e-73
Identities = 131/133 (98%), Positives = 133/133 (99%)
Query: 1 MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPA 60
MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPA
Sbjct: 1 MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPA 60
Query: 61 SLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPI 120
SLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPI
Sbjct: 61 SLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPI 120
Query: 121 AIPKLFKELLNAI 133
AIPKLFKELL+A+
Sbjct: 121 AIPKLFKELLSAV 133
>ref|NP_223546.1| putative [Helicobacter pylori J99]
Length = 68
Score = 24.3 bits (51), Expect = 1.3
Identities = 9/16 (56%), Positives = 15/16 (93%)
Query: 64 QVLEIRTQIKELRKVF 79
+VLEI+TQ+KE++K +
Sbjct: 28 KVLEIKTQMKEIKKQY 43
>ref|NP_222872.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 442
Score = 24.3 bits (51), Expect = 1.3
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 36 QNVLPENEEGVFVIRSIKADFFTPASLGQVLEIRTQIKELRKVFVVLFQEIYCI--QNAS 93
Q + NE V +RSI + TP + G++L + + K F +F + + Q A
Sbjct: 196 QKINAMNESRVLFLRSIMHELRTPITKGKILSSMLKEELSCKRFSSIFDHLNMLIEQFAR 255
Query: 94 LEPMKPFKVFASEIKF 109
+E + +++ KF
Sbjct: 256 IEQLASKNYGSNKEKF 271
>ref|NP_223733.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN [Helicobacter
pylori J99]
Length = 341
Score = 23.5 bits (49), Expect = 2.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 49 IRSIKADFFTPASLGQVLEIRTQIKEL 75
+R+ +AD FTP + +V+E+ + E+
Sbjct: 233 LRNERADLFTPQLINEVIEMFKKAVEI 259
>ref|NP_223403.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 223
Score = 23.1 bits (48), Expect = 2.8
Identities = 24/90 (26%), Positives = 39/90 (42%), Gaps = 12/90 (13%)
Query: 12 SEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPASLGQVLEI--- 68
+E V+ HAN R +F F P ++RS D + +V I
Sbjct: 17 NEPVIKHANL----RIKRKDFVFISG--PSGSGKSTLLRSFYGDLKVFSGKLEVCNINMN 70
Query: 69 ---RTQIKELRKVFVVLFQEIYCIQNASLE 95
++ I +LRK V+FQ+ IQ+ ++E
Sbjct: 71 NASKSTILDLRKNIGVVFQDYKLIQDYTIE 100
>ref|NP_223457.1| putative [Helicobacter pylori J99]
Length = 279
Score = 22.7 bits (47), Expect = 3.6
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 65 VLEIRTQIKELRKVFVVLFQEIYCI 89
++ ++T +K L K+F+ FQ+I+ +
Sbjct: 9 LISLKTFLKILLKIFLKTFQKIWIV 33
>ref|NP_223643.1| putative [Helicobacter pylori J99]
Length = 338
Score = 22.3 bits (46), Expect = 4.8
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 63 GQVLEIRTQIKELRKVFVVLF--QEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPI 120
G+++ + K K F V+ Q+++ +EP FK + F +N+ P+
Sbjct: 183 GELVIDKNTKKPKHKQFAVIENGQKVFKPAYRDIEPQAQFKFVYNIEMFPSINKEKIKPL 242
Query: 121 AIPKL 125
+ KL
Sbjct: 243 NLDKL 247
>ref|NP_223040.1| putative [Helicobacter pylori J99]
Length = 293
Score = 22.3 bits (46), Expect = 4.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 52 IKADFFTPASLGQVLEIRTQIKELRKVFVVLFQEI 86
I TP ++ + L IR+QI L K + L + +
Sbjct: 165 INKPILTPQNIQKDLRIRSQISPLGKPSITLVEPL 199
>ref|NP_224029.1| lipopolysaccharide biosynthesis protein [Helicobacter pylori J99]
Length = 367
Score = 21.9 bits (45), Expect = 6.2
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 90 QNASLEPMKPFKVFASEIKFGFVNRSTYS 118
QN L+ ++PFK FAS ++F +N +S
Sbjct: 75 QNKLLKTIEPFKKFAS-LEFIDINSLDHS 102
>ref|NP_224021.1| putative [Helicobacter pylori J99]
Length = 410
Score = 21.6 bits (44), Expect = 8.1
Identities = 8/30 (26%), Positives = 16/30 (52%)
Query: 5 VYYEDTDSEGVVYHANYLKYCERARSEFFF 34
++Y D D +G++ + + C R + FF
Sbjct: 29 IFYTDNDCDGMLAGSVLMSMCYRLGIKDFF 58
>ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 452
Score = 21.6 bits (44), Expect = 8.1
Identities = 10/53 (18%), Positives = 27/53 (50%)
Query: 26 ERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPASLGQVLEIRTQIKELRKV 78
E A++ F + +N + I+++ DF + + ++ + +IK+L ++
Sbjct: 396 ENAKTPFMLAGGLNLDNIQKALKIKALGLDFNSGLEISPGIKNKDKIKQLARI 448
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.326 0.141 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,056
Number of Sequences: 1491
Number of extensions: 5898
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 11
length of query: 133
length of database: 494,079
effective HSP length: 69
effective length of query: 64
effective length of database: 391,200
effective search space: 25036800
effective search space used: 25036800
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 44 (21.6 bits)