BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645129|ref|NP_207299.1| hypothetical protein
[Helicobacter pylori 26695]
(54 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223172.1| putative [Helicobacter pylori J99] 101 3e-24
ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 24 0.54
ref|NP_223402.1| putative [Helicobacter pylori J99] 23 0.92
ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 2.0
ref|NP_223860.1| putative [Helicobacter pylori J99] 22 2.7
ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME ... 22 3.5
ref|NP_223106.1| putative proline peptidase [Helicobacter p... 22 3.5
ref|NP_223265.1| putative secretion/efflux abc transporter,... 21 4.6
ref|NP_223378.1| ANAEROBIC C4-DICARBOXYLATE MEMBRANE TRANSP... 21 6.0
>ref|NP_223172.1| putative [Helicobacter pylori J99]
Length = 343
Score = 101 bits (251), Expect = 3e-24
Identities = 45/49 (91%), Positives = 46/49 (93%)
Query: 1 MNLGVYYTPPYLVDCAYKLLKKHVGIEKYTLLDTACGNKEFLKLQHPKK 49
+NLG YYTPPYLVDCAYKLLKKHVGIE YTLLDTACGNKEFLKL HPKK
Sbjct: 14 VNLGAYYTPPYLVDCAYKLLKKHVGIENYTLLDTACGNKEFLKLHHPKK 62
>ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 545
Score = 24.3 bits (51), Expect = 0.54
Identities = 18/55 (32%), Positives = 25/55 (44%), Gaps = 5/55 (9%)
Query: 4 GVYYTPPYLVDCAYKLLKKHVGIEKYTLLDTACGNKEF----LKLQHPKKNRSGY 54
G+YYTP +V+ + L K + D A G+ F LKL +N GY
Sbjct: 111 GIYYTPNRIVEQLF-TLPKDFDTTQAIFCDPAVGSGNFVMHALKLGFKVENIYGY 164
>ref|NP_223402.1| putative [Helicobacter pylori J99]
Length = 400
Score = 23.5 bits (49), Expect = 0.92
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 36 CGNKEFLKLQHPKKN 50
C ++EFL L+HP K+
Sbjct: 23 CFHREFLSLKHPTKS 37
>ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 343
Score = 22.3 bits (46), Expect = 2.0
Identities = 10/24 (41%), Positives = 14/24 (57%)
Query: 16 AYKLLKKHVGIEKYTLLDTACGNK 39
A+ L +K +GI+ L AC NK
Sbjct: 300 AFLLQRKFIGIDNSDLAIQACKNK 323
>ref|NP_223860.1| putative [Helicobacter pylori J99]
Length = 234
Score = 21.9 bits (45), Expect = 2.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 9 PPYLVDCAYKLLKKHVGIEKYTLLD 33
P VD K+LKK++ E+ T LD
Sbjct: 65 PKSEVDFLMKMLKKYLKDERSTYLD 89
>ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 620
Score = 21.6 bits (44), Expect = 3.5
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 16 AYKLLKKHVGIEKYTLLDTACGNKEFLK 43
A+K+ ++++GIE+ ++T KE LK
Sbjct: 473 AHKMKRRYIGIEQMDYIETI--TKERLK 498
>ref|NP_223106.1| putative proline peptidase [Helicobacter pylori J99]
Length = 357
Score = 21.6 bits (44), Expect = 3.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 24 VGIEKYTLLDTACGNKEFLK 43
V ++ Y LD+A GNK L+
Sbjct: 92 VNLQTYKRLDSAVGNKVVLE 111
>ref|NP_223265.1| putative secretion/efflux abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 589
Score = 21.2 bits (43), Expect = 4.6
Identities = 10/23 (43%), Positives = 12/23 (51%)
Query: 12 LVDCAYKLLKKHVGIEKYTLLDT 34
L+D LL+KH E LL T
Sbjct: 47 LIDIVVNLLQKHTHFEYSLLLPT 69
>ref|NP_223378.1| ANAEROBIC C4-DICARBOXYLATE MEMBRANE TRANSPORTER [Helicobacter
pylori J99]
Length = 443
Score = 20.8 bits (42), Expect = 6.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 11 YLVDCAYKLLKKH 23
YLV A K+L+KH
Sbjct: 74 YLVQIAEKILRKH 86
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.141 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,617
Number of Sequences: 1491
Number of extensions: 2463
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 54
length of database: 494,079
effective HSP length: 30
effective length of query: 24
effective length of database: 449,349
effective search space: 10784376
effective search space used: 10784376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 41 (20.4 bits)