BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645132|ref|NP_207302.1| hypothetical protein
[Helicobacter pylori 26695]
(154 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223173.1| putative [Helicobacter pylori J99] 275 5e-76
ref|NP_224003.1| putative [Helicobacter pylori J99] 30 0.039
ref|NP_222747.1| DETHIOBIOTIN SYNTHETASE [Helicobacter pylo... 29 0.066
ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 27 0.19
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 26 0.56
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 25 1.3
ref|NP_222824.1| putative [Helicobacter pylori J99] 25 1.3
ref|NP_223814.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTE... 24 1.6
ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylor... 23 3.6
ref|NP_224151.1| putative [Helicobacter pylori J99] 23 4.8
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 23 4.8
ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter... 23 4.8
ref|NP_222973.1| putative [Helicobacter pylori J99] 23 4.8
ref|NP_223731.1| putative [Helicobacter pylori J99] 22 6.2
ref|NP_223383.1| putative [Helicobacter pylori J99] 22 6.2
ref|NP_224123.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 22 8.1
>ref|NP_223173.1| putative [Helicobacter pylori J99]
Length = 251
Score = 275 bits (702), Expect = 5e-76
Identities = 139/154 (90%), Positives = 146/154 (94%)
Query: 1 MIDYAKQLGLISLENLENTLKYLKKQKQFIEDNFMITRERFRSHQFGGMDFELSRISYPL 60
MI YAK+LGLISLENLENTLK+L+KQKQFIEDNFMITRERFRSHQFGGMDFELSRISYPL
Sbjct: 98 MIYYAKRLGLISLENLENTLKFLEKQKQFIEDNFMITRERFRSHQFGGMDFELSRISYPL 157
Query: 61 LIHSFDDNELSEIVIREQQYGSKTQAMLYFCFSILELKTATPLLNRTATLKEHAFLTIHK 120
LIHSFDDNELSEIVI+EQQYGSKTQAMLYFCFSILELKTATPLLNRTA KEHA L IH+
Sbjct: 158 LIHSFDDNELSEIVIKEQQYGSKTQAMLYFCFSILELKTATPLLNRTAMPKEHALLIIHE 217
Query: 121 ANAPMFLEMLKIFGLLSQAHHSDVLKILEKILQN 154
NA +FLEMLKIFGLLSQ HH+DVLKILEKILQN
Sbjct: 218 TNALVFLEMLKIFGLLSQVHHNDVLKILEKILQN 251
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 29.6 bits (65), Expect = 0.039
Identities = 27/114 (23%), Positives = 55/114 (47%), Gaps = 9/114 (7%)
Query: 3 DYAKQLGLISLENLENTLKYLKKQKQFIEDNFMITRERFRSHQFGGMDFELSRISYPLLI 62
DY+KQ+ +L++++N Y + +++ I +R+ + + + ++Y
Sbjct: 180 DYSKQIDFKNLKSVKNKDFYRAPKDSLMKE---IALFYYRADLMSDEESKENLLNYK--- 233
Query: 63 HSFDDNELSEIVIREQQYGSKTQAMLYFCFSILELKTATPLLNRTATLKEHAFL 116
DN + +++ E G+KT++ FS+L LK L N +AT E + L
Sbjct: 234 -DCWDNGENYVILDEAHKGNKTESKRQAIFSLLSLKGF--LFNFSATFTEESDL 284
>ref|NP_222747.1| DETHIOBIOTIN SYNTHETASE [Helicobacter pylori J99]
Length = 218
Score = 28.9 bits (63), Expect = 0.066
Identities = 12/26 (46%), Positives = 19/26 (72%)
Query: 103 LLNRTATLKEHAFLTIHKANAPMFLE 128
LL+R+ TLK+ +F HKA+AP+ +
Sbjct: 60 LLDRSLTLKDISFYRYHKASAPLIAQ 85
>ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 660
Score = 27.3 bits (59), Expect = 0.19
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 96 ELKTATPLLNRTATLKEHAFLTI 118
E+KT TP+ + T KE AFLT+
Sbjct: 509 EVKTFTPIETKKITSKEQAFLTL 531
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 25.8 bits (55), Expect = 0.56
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 20/120 (16%)
Query: 12 SLENLENTLKYLKKQKQFIEDNFMITRERFRSHQFGGMDFELSRISYP--------LLIH 63
S E + TL Y K++ +I++ F + H G + F R+ ++
Sbjct: 137 SNEEVLKTLDYSKEKLDYIKNLF-----GSKCHS-GWLSFMYPRLLLAKDLLKQDGVIFI 190
Query: 64 SFDDNELSEI-VIREQQYGSKTQAMLYFCFSILELKTATPLLNRTATLKEHAFLTIHKAN 122
S DDNE +++ ++ ++ +G F + L KT TP T K H F+ ++ N
Sbjct: 191 SIDDNECAQLKLLCDEIFGEGN-----FIETFLWNKTQTPPSASNKTRKTHEFILCYQKN 245
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 24.6 bits (52), Expect = 1.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 51 FELSRISYPLLIHSFDDNELSEI 73
FE + L+H FDDN+L ++
Sbjct: 328 FENKKFLVGSLVHKFDDNDLEDL 350
>ref|NP_222824.1| putative [Helicobacter pylori J99]
Length = 266
Score = 24.6 bits (52), Expect = 1.3
Identities = 16/46 (34%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Query: 97 LKTATPLLNRTATLKEHAFLTIHKANAPMFLEMLKIFGLLSQAHHS 142
L+T P+ ++ LKE A L + A + ++L G+L QAH S
Sbjct: 26 LQTLEPISSKR--LKELANLKVSCATIRNYFQILSKEGMLHQAHSS 69
>ref|NP_223814.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN [Helicobacter pylori
J99]
Length = 223
Score = 24.3 bits (51), Expect = 1.6
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 114 AFLTIHKANAPMFLEMLKIFGLLSQAHHSDVLKILEKILQ 153
+FL++ ++ +F M+K L+S D+LK+ ++I++
Sbjct: 140 SFLSLLPSSLNLFTRMIKTTALVSLIGAVDLLKVGQQIIE 179
>ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 847
Score = 23.1 bits (48), Expect = 3.6
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 6 KQLGLISLENLENTLKYLKKQKQFIEDNFMITRERFRSHQFGGMD-FELS 54
K +G++ E N YLK+ K+ + ERF GM+ F LS
Sbjct: 319 KVVGVVC-EQFSNVHAYLKESKEMVMKECFEEEERFLETLESGMELFNLS 367
>ref|NP_224151.1| putative [Helicobacter pylori J99]
Length = 307
Score = 22.7 bits (47), Expect = 4.8
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 90 FCFSILELKTATPLLNRTATLKEHAFLTIHKANAPMFLEMLKIFGLLSQAHHSDVLKIL- 148
FC S + A +++ AT KAN P++++ L Q + D K+L
Sbjct: 242 FCLSFCAHEDALVVIDGQATYDL-------KANQPLYIQKSPTTTKLLQKNSRDYFKVLK 294
Query: 149 EKIL 152
EK+L
Sbjct: 295 EKLL 298
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 22.7 bits (47), Expect = 4.8
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 96 ELKTATPLLNRTATLKEHAFLTIHKANAPMFLEMLKIFGLLSQAHHSDVL 145
EL +L++ LK+ L + N + E+L I GL Q +L
Sbjct: 203 ELPLIYQVLSQEVLLKQKRTLDANTLNKDFYEELLYILGLEEQNDKGKIL 252
>ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter pylori J99]
Length = 803
Score = 22.7 bits (47), Expect = 4.8
Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 11/157 (7%)
Query: 1 MIDYAKQLGLISLENLENTLKYLKKQKQFIEDNFMITRERFRSHQFGGMDFELSRISYPL 60
+ID + G LEN + Y +Q+QFI I + R D + + + PL
Sbjct: 77 VIDSIPKEGFTPLENAFFNITYSMRQQQFI---LHIKPKVMRRLTLFSFDRDYKK-AIPL 132
Query: 61 LIHSFDDNELSEIVIREQQ---YGSKTQAMLYFCFSILELKTATPLLNRTATLKEHAFLT 117
+ + ++ +I+ +Q+ K A F I+ TP++ + + LT
Sbjct: 133 FVENDAKAKMWQIIGYDQKIPFLSEKDNAQKGLNFPIIIKDAQTPII-QELDVNNKPLLT 191
Query: 118 IHKANAPMFLEMLKIFGLLSQAHHSDVLKILEKILQN 154
+ +LE K + SQA+ D L+ + + +N
Sbjct: 192 TKGYDLNAYLEAKK--QMDSQAYF-DALRTISRAFKN 225
>ref|NP_222973.1| putative [Helicobacter pylori J99]
Length = 409
Score = 22.7 bits (47), Expect = 4.8
Identities = 15/55 (27%), Positives = 27/55 (48%), Gaps = 1/55 (1%)
Query: 2 IDYAKQLGLISLENLENTLKYLKKQKQFIEDNFMITRERFRSHQFGGMDFELSRI 56
ID K + + N +L+ LK+ K +++ F+IT F + G +L R+
Sbjct: 249 IDMFKDTHTLFVHNQFASLEALKRIKSQVKNAFLITCP-FSNRLLSGKALDLERV 302
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 22.3 bits (46), Expect = 6.2
Identities = 14/58 (24%), Positives = 29/58 (49%)
Query: 11 ISLENLENTLKYLKKQKQFIEDNFMITRERFRSHQFGGMDFELSRISYPLLIHSFDDN 68
+++ +LE+ LK LK + ++ I++ +++ DFE + I SF+ N
Sbjct: 55 LAIGDLESRLKSLKGMDKDAKELVGISKSYAHNNEKDRSDFERFKSRLDKAIDSFNQN 112
>ref|NP_223383.1| putative [Helicobacter pylori J99]
Length = 338
Score = 22.3 bits (46), Expect = 6.2
Identities = 12/32 (37%), Positives = 17/32 (52%), Gaps = 4/32 (12%)
Query: 17 ENTLKYLKKQKQFIED----NFMITRERFRSH 44
++TLK L K ++F ED + R FR H
Sbjct: 158 KDTLKTLAKDQKFFEDDSNSSLKFKRNCFRKH 189
>ref|NP_224123.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 879
Score = 21.9 bits (45), Expect = 8.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 64 SFDDNELSEIVIREQQYGSKTQAMLYFCF 92
SF + ++ + + Q YG+K +A Y F
Sbjct: 143 SFTTIDANDFLRKNQTYGAKAEAAFYTNF 171
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.324 0.139 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,163
Number of Sequences: 1491
Number of extensions: 6308
Number of successful extensions: 44
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 19
length of query: 154
length of database: 494,079
effective HSP length: 70
effective length of query: 84
effective length of database: 389,709
effective search space: 32735556
effective search space used: 32735556
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)