BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645135|ref|NP_207305.1| hypothetical protein
[Helicobacter pylori 26695]
(452 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223176.1| putative [Helicobacter pylori J99] 781 0.0
ref|NP_223515.1| putative [Helicobacter pylori J99] 140 9e-35
ref|NP_223025.1| putative [Helicobacter pylori J99] 58 6e-10
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 54 6e-09
ref|NP_223788.1| putative [Helicobacter pylori J99] 49 3e-07
ref|NP_223773.1| putative [Helicobacter pylori J99] 47 1e-06
ref|NP_222772.1| putative [Helicobacter pylori J99] 46 2e-06
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 43 1e-05
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 43 2e-05
ref|NP_223787.1| putative [Helicobacter pylori J99] 42 3e-05
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 41 5e-05
ref|NP_223830.1| putative [Helicobacter pylori J99] 41 7e-05
ref|NP_223646.1| putative [Helicobacter pylori J99] 39 2e-04
ref|NP_223322.1| putative [Helicobacter pylori J99] 39 2e-04
ref|NP_222831.1| putative [Helicobacter pylori J99] 39 4e-04
ref|NP_223415.1| putative [Helicobacter pylori J99] 37 8e-04
ref|NP_223889.1| putative [Helicobacter pylori J99] 37 0.001
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 37 0.001
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 37 0.001
ref|NP_222962.1| putative [Helicobacter pylori J99] 36 0.002
ref|NP_222894.1| putative [Helicobacter pylori J99] 34 0.007
ref|NP_222840.1| putative [Helicobacter pylori J99] 33 0.011
ref|NP_222774.1| putative [Helicobacter pylori J99] 33 0.011
ref|NP_223183.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 33 0.015
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 33 0.019
ref|NP_223629.1| putative [Helicobacter pylori J99] 33 0.019
ref|NP_223560.1| putative [Helicobacter pylori J99] 33 0.019
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 32 0.025
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 32 0.025
ref|NP_223642.1| putative [Helicobacter pylori J99] 32 0.043
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 32 0.043
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 31 0.057
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 29 0.22
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 28 0.37
ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 28 0.37
ref|NP_223219.1| putative [Helicobacter pylori J99] 28 0.37
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 28 0.48
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 28 0.48
ref|NP_224073.1| putative motility protein [Helicobacter py... 28 0.63
ref|NP_223180.1| putative [Helicobacter pylori J99] 28 0.63
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 28 0.63
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 27 0.82
ref|NP_223761.1| putative [Helicobacter pylori J99] 27 0.82
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 27 0.82
ref|NP_223656.1| putative [Helicobacter pylori J99] 27 0.82
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 27 1.1
ref|NP_223759.1| putative [Helicobacter pylori J99] 27 1.1
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 27 1.1
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 27 1.1
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 27 1.4
ref|NP_223137.1| putative [Helicobacter pylori J99] 27 1.4
ref|NP_224062.1| putative [Helicobacter pylori J99] 26 1.8
ref|NP_223659.1| putative [Helicobacter pylori J99] 26 1.8
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 26 1.8
ref|NP_222877.1| putative [Helicobacter pylori J99] 26 1.8
ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helico... 26 1.8
ref|NP_224131.1| putative [Helicobacter pylori J99] 26 2.4
ref|NP_223199.1| cag island protein [Helicobacter pylori J99] 26 2.4
ref|NP_223158.1| putative [Helicobacter pylori J99] 26 2.4
ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE ... 25 3.1
ref|NP_223375.1| putative [Helicobacter pylori J99] 25 3.1
ref|NP_223090.1| putative [Helicobacter pylori J99] 25 3.1
ref|NP_223915.1| putative [Helicobacter pylori J99] 25 4.1
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 25 4.1
ref|NP_223651.1| putative [Helicobacter pylori J99] 25 4.1
ref|NP_223610.1| putative [Helicobacter pylori J99] 25 4.1
ref|NP_223318.1| putative Outer membrane protein [Helicobac... 25 4.1
ref|NP_223038.1| putative [Helicobacter pylori J99] 25 4.1
ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter p... 25 5.3
ref|NP_224090.1| putative [Helicobacter pylori J99] 25 5.3
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 25 5.3
ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter py... 25 5.3
ref|NP_223405.1| putative [Helicobacter pylori J99] 25 5.3
ref|NP_223387.1| putative [Helicobacter pylori J99] 25 5.3
ref|NP_224134.1| putative [Helicobacter pylori J99] 24 6.9
ref|NP_224041.1| putative [Helicobacter pylori J99] 24 6.9
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 24 6.9
ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter ... 24 9.0
ref|NP_223661.1| putative [Helicobacter pylori J99] 24 9.0
ref|NP_223645.1| putative [Helicobacter pylori J99] 24 9.0
ref|NP_223443.1| putative Outer membrane protein [Helicobac... 24 9.0
ref|NP_223089.1| putative [Helicobacter pylori J99] 24 9.0
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 781 bits (2018), Expect = 0.0
Identities = 407/453 (89%), Positives = 424/453 (92%), Gaps = 4/453 (0%)
Query: 1 MLRLLIGLLLMSFISLQSASWQEPLRVSIEFVDLPKKIIRFPAHDLQVGEFGFVVTKLSD 60
MLRLLIGLLLMSFISLQSASWQEPLRVSIEFVDLPKKIIRFPAHDL+VGEFGFVVTKLSD
Sbjct: 1 MLRLLIGLLLMSFISLQSASWQEPLRVSIEFVDLPKKIIRFPAHDLKVGEFGFVVTKLSD 60
Query: 61 YEIVNSEVVIIAVENGVATAKFRAFESMKQRHLPTPRMVARKGDLVYFRQFNNQAFLIAP 120
YEIVNSEVVIIAVENGVATAKF+AFESMKQ HLPTPRMVA+KGDLVYFRQFNNQAFLIAP
Sbjct: 61 YEIVNSEVVIIAVENGVATAKFKAFESMKQSHLPTPRMVAKKGDLVYFRQFNNQAFLIAP 120
Query: 121 NDELYEQIRATNTDINFISSDLLVTFLNGFDPKIANLRKACNVYSVGVIYIVTTNTLNIL 180
NDELYEQIRATNTDINFISSDLLVTFLNGFDPKIANLRKACNVYSVGVIYIVTTNTLNIL
Sbjct: 121 NDELYEQIRATNTDINFISSDLLVTFLNGFDPKIANLRKACNVYSVGVIYIVTTNTLNIL 180
Query: 181 SCESFEILEKRELDTSGVTKTSTPFFSRVEGIDAGTLGKLFSGSQSKNYFAYYDALVKKE 240
SCESFEILEKRELDTSGVTKTSTPFFSRVEGIDAGTLGKLFSGSQSKNYFAYYDALVKKE
Sbjct: 181 SCESFEILEKRELDTSGVTKTSTPFFSRVEGIDAGTLGKLFSGSQSKNYFAYYDALVKKE 240
Query: 241 KRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAKE 300
KRKEVRI+K+EE+ID+RE KREIKQEAIKEPKKANQGT+NAPTLEEKNYQKAERK DAKE
Sbjct: 241 KRKEVRIEKKEERIDARENKREIKQEAIKEPKKANQGTENAPTLEEKNYQKAERKFDAKE 300
Query: 301 ERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKEN 360
ERR RDERKK KATKKAMEFEEREKEHDERDE+ETE RRKALEMDKG+ E+V KEN
Sbjct: 301 ERRRSRDERKKTKATKKAMEFEEREKEHDERDEKETEERRKALEMDKGN---EKVNAKEN 357
Query: 361 EREIKQEAIKEPSDGNNAT-QQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAE 419
EREI QE+ EPS NNAT + E + KE+ A+KE KP+SKEEKRRLKEEKKKAKAE
Sbjct: 358 EREINQESANEPSSENNATLKDTENTSVLKESAAKKEAPKPSSKEEKRRLKEEKKKAKAE 417
Query: 420 QRAREFEQRAREHQERDEKELEERRKALEAGKK 452
QRAREFEQRAREHQERDEKELEERRKALE KK
Sbjct: 418 QRAREFEQRAREHQERDEKELEERRKALEMNKK 450
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 140 bits (352), Expect = 9e-35
Identities = 87/162 (53%), Positives = 101/162 (61%), Gaps = 11/162 (6%)
Query: 301 ERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKEN 360
+R YL K K A EF+ +K + R KA E +K +E +VKP+ +
Sbjct: 381 DRYYLDYNDFKPKLYPHAAEFKTSQKGEKGNAPIYLQERHKAKE-NKQPLEENKVKPRNS 439
Query: 361 ---EREIKQEAIKEPSDGNNATQQGEKQN-------APKENNAQKEENKPNSKEEKRRLK 410
E E+K + D NNA QQGE +N KEN A+KE KP+SKEEKRRLK
Sbjct: 440 GFEEEEVKTRRPEPTKDQNNAIQQGETKNNESKNTPISKENAAKKEAPKPSSKEEKRRLK 499
Query: 411 EEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALEAGKK 452
EEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALE KK
Sbjct: 500 EEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALEMNKK 541
Score = 87.4 bits (215), Expect = 7e-19
Identities = 47/121 (38%), Positives = 74/121 (60%), Gaps = 6/121 (4%)
Query: 233 YDALVKKEKRKEVRIKKREEKIDSREIKR------EIKQEAIKEPKKANQGTQNAPTLEE 286
+ A K+ +E ++K R + E+K + + AI++ + N ++N P +E
Sbjct: 420 HKAKENKQPLEENKVKPRNSGFEEEEVKTRRPEPTKDQNNAIQQGETKNNESKNTPISKE 479
Query: 287 KNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMD 346
+K K +KEE+R L++E+KKAKA ++A EFE+R +EH ERDE+E E RRKALEM+
Sbjct: 480 NAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALEMN 539
Query: 347 K 347
K
Sbjct: 540 K 540
Score = 33.9 bits (76), Expect = 0.009
Identities = 24/69 (34%), Positives = 32/69 (45%), Gaps = 5/69 (7%)
Query: 243 KEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAKEER 302
KE KK K S+E KR +K+E KK + Q A E++ + ER EER
Sbjct: 478 KENAAKKEAPKPSSKEEKRRLKEE-----KKKAKAEQRAREFEQRAREHQERDEKELEER 532
Query: 303 RYLRDERKK 311
R + KK
Sbjct: 533 RKALEMNKK 541
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 57.8 bits (138), Expect = 6e-10
Identities = 53/222 (23%), Positives = 104/222 (45%), Gaps = 12/222 (5%)
Query: 234 DALVKKEKRKEVRI----KKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNY 289
+AL K+E E ++ ++E + E + E+K+E +KE ++ + Q E N
Sbjct: 148 EALAKEEPNNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVAE--NP 205
Query: 290 QKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGD 349
Q E+ D + + E K + K +E +E E E + + QE E ++ + K +
Sbjct: 206 QDEEKPKDDETQGSV---EPPKDEEVSKELETQE-ELETPKEETQEQEPIKEETQEIKEE 261
Query: 350 KKEE-RVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRR 408
K+E+ + P E E QE +KE + +N + ++ +EN ++ + E +
Sbjct: 262 KQEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQETQENTETPQDIETQELEIPKE 321
Query: 409 LKEEKKKAKAEQRAREFEQRAREHQERDEKEL-EERRKALEA 449
+ ++ K + + E E+ A QE++ +E +E + LEA
Sbjct: 322 EETQEVAEKTQVQGLEKEEIAETPQEKEIQETQDETPQELEA 363
Score = 55.5 bits (132), Expect = 3e-09
Identities = 47/209 (22%), Positives = 98/209 (46%), Gaps = 16/209 (7%)
Query: 238 KKEKRKEVRIKKREEKIDSREIKREIKQEAIKEP--KKANQGTQNAPTLEEKNYQKAERK 295
K+E ++EV KK E K E+K + KQE + P ++ + + ++E ++ ++
Sbjct: 174 KEEAQEEV--KKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKE 231
Query: 296 LDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERV 355
L+ +EE ++E T++ +E +E E +++T+ A E++ + + +
Sbjct: 232 LETQEELETPKEE------TQEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEI 285
Query: 356 KPKENEREIKQEAIKEPSDGNNATQQGEKQ--NAPKENNAQKEENKPNSKEEKRRLKEEK 413
+ N++E K+E +E + Q E Q PKE Q+ K + + KEE
Sbjct: 286 QENSNDQENKKET-QETQENTETPQDIETQELEIPKEEETQEVAEKTQVQGLE---KEEI 341
Query: 414 KKAKAEQRAREFEQRAREHQERDEKELEE 442
+ E+ +E + + E +++L+E
Sbjct: 342 AETPQEKEIQETQDETPQELEAQDEKLQE 370
Score = 47.0 bits (110), Expect = 1e-06
Identities = 48/224 (21%), Positives = 104/224 (46%), Gaps = 30/224 (13%)
Query: 239 KEKRKEVRIKKREEKIDSREIKREIKQEAIK---EPKKANQGTQNAPTLEEKNYQKAERK 295
KE ++EV+ K+++E ++ + + + K + + EP K + ++ T EE K E +
Sbjct: 187 KEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELETPKEETQ 246
Query: 296 LDA--KEERRYLRDERK-KAKATKKAMEFEE--------REKEHDERDEQETEGRRK--- 341
KEE + +++E++ K + + A E E +E +D+ +++ET+ ++
Sbjct: 247 EQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQETQENTE 306
Query: 342 --------ALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNA 393
LE+ K ++ +E + + + K+E + P + Q E P+E A
Sbjct: 307 TPQDIETQELEIPKEEETQEVAEKTQVQGLEKEEIAETPQEKEIQETQDE---TPQELEA 363
Query: 394 QKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDE 437
Q E+ + N + ++E + + ++ +E Q +H E E
Sbjct: 364 QDEKLQENETPKDESMQESAQNLQDKETPQEETQ--EDHYESIE 405
Score = 45.4 bits (106), Expect = 3e-06
Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 15/204 (7%)
Query: 251 EEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERK 310
E D E +++ A +EP N Q PTL E+ + + + + ++ +++ ++
Sbjct: 135 ETNWDELENLGDLEALAKEEP---NNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQE 191
Query: 311 KAKATKKAMEFEEREKEHDER--DEQETEGR---RKALEMDKG-DKKEERVKPKENEREI 364
+ K +K E E DE + ET+G K E+ K + +EE PKE +E
Sbjct: 192 EVKEKQKQ---EVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELETPKEETQE- 247
Query: 365 KQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRARE 424
QE IKE + +Q + Q++P + + +E +E KK+ + Q E
Sbjct: 248 -QEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQETQENTE 306
Query: 425 FEQRAREHQERDEKELEERRKALE 448
Q E QE + + EE ++ E
Sbjct: 307 TPQDI-ETQELEIPKEEETQEVAE 329
Score = 37.0 bits (84), Expect = 0.001
Identities = 33/183 (18%), Positives = 78/183 (42%), Gaps = 1/183 (0%)
Query: 247 IKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLR 306
+K+ +E + +E K+E ++ + TQ +E+ Q+ K + +
Sbjct: 282 VKEIQENSNDQENKKETQETQENTETPQDIETQELEIPKEEETQEVAEKTQVQGLEKEEI 341
Query: 307 DERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQ 366
E + K ++ + +E E + QE E + + +++ P+E +E
Sbjct: 342 AETPQEKEIQETQDETPQELEAQDEKLQENETPKDESMQESAQNLQDKETPQEETQEDHY 401
Query: 367 EAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRR-LKEEKKKAKAEQRAREF 425
E+I++ + A GE+ E A+ N+ +++ K +K ++K ++++ +
Sbjct: 402 ESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNENDTETPKESDIKAPQEKEESDKTSSPL 461
Query: 426 EQR 428
E R
Sbjct: 462 ELR 464
Score = 26.9 bits (58), Expect = 1.1
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 359 ENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKA 418
EN +++ A +EP NN Q N +E KEE + K+E+ + +E+ K K
Sbjct: 142 ENLGDLEALAKEEP---NNEEQLLPTLNE-QEGETPKEEAQEEVKKEEVKEMQEEVKEKQ 197
Query: 419 EQRAREFEQRAREHQERDEKELEERRKALEAGKK 452
+Q E Q + ++ + + E K E K+
Sbjct: 198 KQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKE 231
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 54.3 bits (129), Expect = 6e-09
Identities = 67/263 (25%), Positives = 108/263 (40%), Gaps = 40/263 (15%)
Query: 227 KNYFAYYDALVKKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEE 286
K+ AY D + K + E +K EK+ + E K+ ++ +A+ K A + L++
Sbjct: 650 KSVRAYLDCVSKAKNEAE---RKECEKLLTPEAKKLLENQALDCLKNAKTDEERKECLKD 706
Query: 287 --KNYQK---------------------AERK----LDAKEERRYLRDERKKAKATKKAM 319
K+ QK AERK L E R+ L + +K KA K +
Sbjct: 707 LPKDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCV 766
Query: 320 EFEEREKEHDERDEQETEGRRKALE---------MDKGDKKEERVKPKENEREIKQEAIK 370
EKE E ++ T RK LE +D K + + KE E+ + EA K
Sbjct: 767 LRARNEKEKQECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARK 826
Query: 371 EPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKA-KAEQRAREFEQRA 429
+ + + + + N +K+E + E R+L EE KK+ KA +
Sbjct: 827 LLEEAKESVKAYKDCVSRARNEKEKQECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNE 886
Query: 430 REHQERDEKELEERRKALEAGKK 452
E +E ++ E RK LE K+
Sbjct: 887 AERKECEKLLTPEARKLLEEAKE 909
Score = 47.8 bits (112), Expect = 6e-07
Identities = 58/235 (24%), Positives = 106/235 (44%), Gaps = 13/235 (5%)
Query: 219 KLFSGSQSKNYFAYYDALVKKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGT 278
KL K+ AY D + + KE K+ EK+ + E ++ ++ +A+ K A
Sbjct: 1047 KLLEQEVKKSVKAYLDCVSRARNEKE---KQECEKLLTPEARKLLENQALDCLKNAKTEA 1103
Query: 279 QNAPTLEE--KNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQET 336
+ +++ K+ QK K+ AKE + D +A+ K+ E E+ + +E+
Sbjct: 1104 EKKRCVKDLPKDLQK---KVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEARKLLEES 1160
Query: 337 EGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKE 396
+ KA +D K + + KE E+ + EA K + + + + + N +K+
Sbjct: 1161 KKSVKAY-LDCVSKAKNEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQ 1219
Query: 397 ENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKE---LEERRKALE 448
E + E R+L E++ K K+ + + RAR +E+ E E E RK LE
Sbjct: 1220 ECEKLLTPEARKLLEQEVK-KSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLE 1273
Score = 43.5 bits (101), Expect = 1e-05
Identities = 47/216 (21%), Positives = 94/216 (42%), Gaps = 4/216 (1%)
Query: 237 VKKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKL 296
VK K R + +EK + ++ ++ ++E KK+ + + + + ++ E +
Sbjct: 835 VKAYKDCVSRARNEKEKQECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNEAERKECEK 894
Query: 297 DAKEERRYLRDERKKA-KATKKAMEFEEREKEHDERDEQETEGRRKALE---MDKGDKKE 352
E R L +E K++ KA K + EKE E ++ T +K LE +D +
Sbjct: 895 LLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQECEKLLTPEAKKLLENQALDCLKNAK 954
Query: 353 ERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEE 412
+ K +++ ++ K+ + + + K +KE K + E ++ L+E
Sbjct: 955 TEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEA 1014
Query: 413 KKKAKAEQRAREFEQRAREHQERDEKELEERRKALE 448
K+ KA + + +E QE ++ E RK LE
Sbjct: 1015 KESVKAYKDCVSRARNEKEKQECEKLLTPEARKLLE 1050
Score = 38.1 bits (87), Expect = 5e-04
Identities = 39/181 (21%), Positives = 81/181 (44%), Gaps = 15/181 (8%)
Query: 219 KLFSGSQSKNYFAYYDALVKKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGT 278
KL K+ AY D + + KE K+ EK+ + E ++ ++++ ++ K
Sbjct: 1231 KLLEQEVKKSVKAYLDCVSRARNEKE---KQECEKLLTPEARKFLEKQRQQKDKAIKDCL 1287
Query: 279 QNAPTLEEKNYQKAERKLDAKEERRYLRDERKKA--KATKKAMEFEEREKEHD-----ER 331
+NA + K L +E+ +YL++ R+KA K A EE+ K + +
Sbjct: 1288 KNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQ 1347
Query: 332 DEQETEGRRKALEMDKGDKKEERVKPKEN-----EREIKQEAIKEPSDGNNATQQGEKQN 386
+ Q + + K ++ K ++ + + +N ++E ++ ++ SD A G K+
Sbjct: 1348 EIQNKKAQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQ 1407
Query: 387 A 387
A
Sbjct: 1408 A 1408
Score = 34.7 bits (78), Expect = 0.005
Identities = 69/294 (23%), Positives = 119/294 (40%), Gaps = 68/294 (23%)
Query: 219 KLFSGSQSKNYFAYYDALVKKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKK-ANQG 277
KL + + + F L K+ + + IK + + + E + + +EAI+ K+ A
Sbjct: 416 KLINDPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDC 475
Query: 278 TQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETE 337
+NA T EE+ ++ + + ++ L D KA K + EKE E ++ T
Sbjct: 476 LKNAKTDEER--KECLKNIPQDLQKELLAD--MSVKAYKDCVSRARNEKEKQECEKLLTP 531
Query: 338 GRRKALEMD-----KGDKKEERVK------PKENEREI-KQEAIKEPSD-GNNATQQGEK 384
+K LE K K +E K PK+ + +I +E++K D + A + EK
Sbjct: 532 EAKKLLENQALDCLKNAKTDEERKECLKNLPKDLQSDILAKESLKAYKDCASQAKTEAEK 591
Query: 385 QNAPK----------------------------ENNAQKEE-NKPNSKEEKRRLKEEKK- 414
+ K + A+K+E K + E K++L+E KK
Sbjct: 592 KECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKS 651
Query: 415 ---------KAKAEQRAREFE-------QRAREHQERD----EKELEERRKALE 448
KAK E +E E ++ E+Q D K EER++ L+
Sbjct: 652 VRAYLDCVSKAKNEAERKECEKLLTPEAKKLLENQALDCLKNAKTDEERKECLK 705
Score = 32.0 bits (71), Expect = 0.033
Identities = 34/222 (15%), Positives = 87/222 (38%), Gaps = 31/222 (13%)
Query: 238 KKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLD 297
KK ++ + EE ++ + +K+ + T+ +E ++ + ++D
Sbjct: 12 KKAQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDNPTETKTHFDEDKLEETQTQMD 71
Query: 298 A------------------KEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGR 339
+ K+ R+ + D+R + +K+++ EE +K ++E D+QE
Sbjct: 72 SGGNETSESSNGSLADKLFKKARKLVDDKRPFTQ--QKSLD-EETQKLNEE-DDQENNEH 127
Query: 340 RKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENK 399
++ + D D + +++ +++ E AT+ ++ KE+ + +
Sbjct: 128 QEETQTDLIDDETSEKTQQDSPQDLSNE---------EATEANHFEDLLKESTESSDNHL 178
Query: 400 PNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELE 441
N E + + K ++ F++ E D + E
Sbjct: 179 DNPTESSDNHLDNPTETKTQETKTHFDEDKPEEITDDSNDQE 220
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 48.9 bits (115), Expect = 3e-07
Identities = 48/195 (24%), Positives = 86/195 (43%), Gaps = 18/195 (9%)
Query: 239 KEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDA 298
++K E + ++ + S E K+EA+KE K Q + K L
Sbjct: 39 QQKAFEKEVNEKRAQYQSYFKNLEQKEEALKERAKEQQAQFDEAV-------KQASALAL 91
Query: 299 KEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPK 358
++ER + +E +K ++ E +KE DE+ +Q E +K E+ ER+K +
Sbjct: 92 QDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEI-------ERLKRE 144
Query: 359 ENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKA-- 416
NE E + +A E N + E++ K + + E +E+ L+ E K A
Sbjct: 145 NNEAESRLKAENEKK--LNEKLELEREKIEKALHEKNELKFKQQEEQLEMLRNELKNAQR 202
Query: 417 KAEQRAREFEQRARE 431
KAE +++F+ +E
Sbjct: 203 KAELSSQQFQGEVQE 217
Score = 40.8 bits (94), Expect = 7e-05
Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 25/178 (14%)
Query: 229 YFAYYDALVKKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKN 288
Y +Y+ L +KE+ + R K+++ + D + + K + +NA ++K
Sbjct: 54 YQSYFKNLEQKEEALKERAKEQQAQFDEAVKQASALALQDERAKIIEEARKNAFLEQQKG 113
Query: 289 YQKAERKLDAKEER-----------RYLRDERKKAKATKKAMEFEEREKEHDERDEQETE 337
+ +++LD K ++ L+ E +A++ KA E EK+ +E+ E E E
Sbjct: 114 LELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKA----ENEKKLNEKLELERE 169
Query: 338 GRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQK 395
KAL +K E + K +E + E+ + +K NA ++ E + + Q+
Sbjct: 170 KIEKALH----EKNELKFKQQEEQLEMLRNELK------NAQRKAELSSQQFQGEVQE 217
Score = 32.3 bits (72), Expect = 0.025
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 325 EKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIK-QEAIKEPSDGNNATQQGE 383
EKE +E+ Q + K LE +KEE +K + E++ + EA+K+ S Q E
Sbjct: 44 EKEVNEKRAQ-YQSYFKNLE-----QKEEALKERAKEQQAQFDEAVKQAS---ALALQDE 94
Query: 384 KQNAPKE--NNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELE 441
+ +E NA E+ K +K ++ K+ + Q+ E E+ RE+ E + +
Sbjct: 95 RAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKA 154
Query: 442 ERRKAL 447
E K L
Sbjct: 155 ENEKKL 160
Score = 28.5 bits (62), Expect = 0.37
Identities = 21/86 (24%), Positives = 36/86 (41%)
Query: 360 NEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAE 419
N E + I+ + QQ + E AQ + N ++++ LKE K+ +A+
Sbjct: 19 NVSEALYKQIESENQSRFLAQQKAFEKEVNEKRAQYQSYFKNLEQKEEALKERAKEQQAQ 78
Query: 420 QRAREFEQRAREHQERDEKELEERRK 445
+ A Q+ K +EE RK
Sbjct: 79 FDEAVKQASALALQDERAKIIEEARK 104
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 47.0 bits (110), Expect = 1e-06
Identities = 34/143 (23%), Positives = 80/143 (55%), Gaps = 10/143 (6%)
Query: 308 ERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKE-ERVKPKENEREIKQ 366
ER +A K ++ +++++ + + ++ +K +++K +K+ + ++PKE +E +
Sbjct: 28 ERHNKEAEKILLDLNKKDEQAIDLNLEDLPSEKKNEKIEKVTEKQGDFLEPKEEPKEEPE 87
Query: 367 EAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFE 426
E++++ N Q+ + NAQK+E K N +EE+RRL+E+ ++ K Q +E
Sbjct: 88 ESLEDIFSSLNDFQE------KTDKNAQKDEQK-NEQEEQRRLREQ-QRLKQNQENQEML 139
Query: 427 QRAREHQERDEKELEE-RRKALE 448
+ +++ + ++LE + K L+
Sbjct: 140 KGLQQNLNQFTQKLESVKNKTLD 162
Score = 33.5 bits (75), Expect = 0.011
Identities = 23/80 (28%), Positives = 37/80 (45%)
Query: 240 EKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAK 299
EK+ E K E++ D E K E K+E + + + +KN QK E+K + +
Sbjct: 59 EKKNEKIEKVTEKQGDFLEPKEEPKEEPEESLEDIFSSLNDFQEKTDKNAQKDEQKNEQE 118
Query: 300 EERRYLRDERKKAKATKKAM 319
E+RR +R K + M
Sbjct: 119 EQRRLREQQRLKQNQENQEM 138
Score = 26.2 bits (56), Expect = 1.8
Identities = 17/85 (20%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 238 KKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQ-----NAPTLEEKNYQKA 292
KK ++ E +K+ + ++ +E +E +E++++ + Q NA E+KN Q+
Sbjct: 60 KKNEKIEKVTEKQGDFLEPKEEPKEEPEESLEDIFSSLNDFQEKTDKNAQKDEQKNEQEE 119
Query: 293 ERKLDAKEERRYLRDERKKAKATKK 317
+R+L ++ + ++ ++ K ++
Sbjct: 120 QRRLREQQRLKQNQENQEMLKGLQQ 144
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 45.8 bits (107), Expect = 2e-06
Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 11/177 (6%)
Query: 278 TQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEE----REKEHDERDE 333
T LE +N K + +E+ L+ + + K +K+ +E E+ REKE+ +D
Sbjct: 43 TTEKERLERENKNLTADKENLTKEKTELQKQVNELKNSKQVLENEKADWLREKENLTKDR 102
Query: 334 QE-TEGRRKALEMDK--GDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKE 390
+ T+ + + E +K +KE KEN + K E+ K+ ++ N+ Q E + A
Sbjct: 103 ENLTKEKTELTEKNKVLTTEKERLATEKENLTKEKTESQKQVNELKNSKQVLENEKADLT 162
Query: 391 N-NAQKEENKPNSKEEKRRLKEEKKKA--KAEQRAREFEQRAREHQERDEKELEERR 444
N N + + +K + E+ +RL EK + K A E E+ A + +E KE +R+
Sbjct: 163 NENTKLKTDKTDLTEKNQRLTTEKTELNNKITGLATEKERLAAD-KENLTKESRQRK 218
Score = 42.0 bits (97), Expect = 3e-05
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 19/183 (10%)
Query: 235 ALVKKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQN--APTLEEKNYQKA 292
AL +++R E K ++ ++ Q+ + E K + Q +N A L EK
Sbjct: 41 ALTTEKERLERENKNLTADKENLTKEKTELQKQVNELKNSKQVLENEKADWLREKENLTK 100
Query: 293 ERKLDAKEERRYLRDERKKAKATKK---AMEFEEREKEHDERDEQ--ETEGRRKALEMDK 347
+R+ KE+ E+ K T+K A E E KE E +Q E + ++ LE +K
Sbjct: 101 DRENLTKEKTELT--EKNKVLTTEKERLATEKENLTKEKTESQKQVNELKNSKQVLENEK 158
Query: 348 GDKKEERVKPKENEREI---KQEAIKEPSDGNN-----ATQQGEKQNAPKEN-NAQKEEN 398
D E K K ++ ++ Q E ++ NN AT++ E+ A KEN + +
Sbjct: 159 ADLTNENTKLKTDKTDLTEKNQRLTTEKTELNNKITGLATEK-ERLAADKENLTKESRQR 217
Query: 399 KPN 401
KPN
Sbjct: 218 KPN 220
Score = 40.8 bits (94), Expect = 7e-05
Identities = 36/155 (23%), Positives = 70/155 (44%), Gaps = 17/155 (10%)
Query: 273 KANQGTQNAP--TLEEKNYQKAERK----LDAKEERRYLRDERKKAKATKKAMEFEE--- 323
K++ TQ P L+ N+ + K + EE + L E+++ + K + ++
Sbjct: 4 KSSNDTQENPKDALKSTNFHEKHTKPTETTELVEENKALTTEKERLERENKNLTADKENL 63
Query: 324 -REKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQG 382
+EK ++ E + ++ LE +K D E KEN + ++ KE ++ T++
Sbjct: 64 TKEKTELQKQVNELKNSKQVLENEKADWLRE----KENLTKDRENLTKEKTE---LTEKN 116
Query: 383 EKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAK 417
+ KE A ++EN K E ++ E K +K
Sbjct: 117 KVLTTEKERLATEKENLTKEKTESQKQVNELKNSK 151
Score = 37.7 bits (86), Expect = 6e-04
Identities = 35/156 (22%), Positives = 72/156 (45%), Gaps = 9/156 (5%)
Query: 293 ERKLDAKEERRYLRDERKKAKATKKAMEFEE--REKEHDERDEQETEGRRKALEMDKGDK 350
E DA + + K + T+ E + EKE ER+ + ++ L +K +
Sbjct: 11 ENPKDALKSTNFHEKHTKPTETTELVEENKALTTEKERLERENKNLTADKENLTKEKTEL 70
Query: 351 KEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLK 410
+++ + K +++ ++ E + N T+ +++N KE E+NK + EK RL
Sbjct: 71 QKQVNELKNSKQVLENEKADWLREKENLTK--DRENLTKEKTELTEKNKVLT-TEKERLA 127
Query: 411 EEKKKAKAEQRAREFEQRAREHQERDEKELEERRKA 446
EK+ E+ E + + ++ ++ K++ E KA
Sbjct: 128 TEKENLTKEKT----ESQKQVNELKNSKQVLENEKA 159
Score = 28.1 bits (61), Expect = 0.48
Identities = 26/121 (21%), Positives = 50/121 (40%), Gaps = 24/121 (19%)
Query: 356 KPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEE-------------NKPNS 402
K + +E ++A+K + T+ E +EN A E +K N
Sbjct: 4 KSSNDTQENPKDALKSTNFHEKHTKPTETTELVEENKALTTEKERLERENKNLTADKENL 63
Query: 403 KEEKRRLKEEKKKAKAEQRAREFEQ-----------RAREHQERDEKELEERRKALEAGK 451
+EK L+++ + K ++ E E+ + RE+ +++ EL E+ K L K
Sbjct: 64 TKEKTELQKQVNELKNSKQVLENEKADWLREKENLTKDRENLTKEKTELTEKNKVLTTEK 123
Query: 452 K 452
+
Sbjct: 124 E 124
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 43.1 bits (100), Expect = 1e-05
Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 29/214 (13%)
Query: 259 IKREIK-QEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKK 317
IK +I+ + K PK+ N+ N + +KA + K+E + + KK K KK
Sbjct: 57 IKEQIQANQPTKNPKQDNKDDLNTAATPKPLAKKASKT--PKKEETKAQPKPKKTKEKKK 114
Query: 318 ---AMEFEEREKEHDERDEQET---EGRRKALEMDKGDKKEERVKPKENEREIKQEAIKE 371
A +++E E E +T E KA+ + +K +++++ + RE + +
Sbjct: 115 EAPAPIIKKKEIEIVNTFENQTPLVENTPKAVSHSQIEKAKQKLQEIQKSREALNKLTQS 174
Query: 372 PSDG-NNATQQGEKQNAPKENNAQKEENKPNSKEE-----------KRRLKEEKK----- 414
++ NNA NA KE + K++ + + E KR + E +
Sbjct: 175 NTNTTNNANSASNVSNAKKEISEVKKQEQEIKRHENIKRRTGFRVIKRNDETENETENSV 234
Query: 415 ---KAKAEQRAREFEQRAREHQERDEKELEERRK 445
K + A FE +E QE+D++E ++ +K
Sbjct: 235 TESKKPTQSAAAIFEDIKKEWQEKDKQETKKTKK 268
Score = 35.8 bits (81), Expect = 0.002
Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 18/216 (8%)
Query: 238 KKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLD 297
K K++E + + + +K ++E K+E IK+ + T T +N KA
Sbjct: 93 KTPKKEETKAQPKPKK--TKEKKKEAPAPIIKKKEIEIVNTFENQTPLVENTPKAVSHSQ 150
Query: 298 AKEERRYLRDERKKAKATKK--------------AMEFEEREKEHDERDEQETEGRR-KA 342
++ ++ L++ +K +A K A +KE E +QE E +R +
Sbjct: 151 IEKAKQKLQEIQKSREALNKLTQSNTNTTNNANSASNVSNAKKEISEVKKQEQEIKRHEN 210
Query: 343 LEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNAT-QQGEKQNAPKENNAQKEENKPN 401
++ G + +R ENE E K+P+ A + +K+ K+ K+ KP+
Sbjct: 211 IKRRTGFRVIKRNDETENETENSVTESKKPTQSAAAIFEDIKKEWQEKDKQETKKTKKPS 270
Query: 402 SKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDE 437
+ K K R+F+ E DE
Sbjct: 271 KPKATPTAKNNKSHKIDFSDVRDFKGNDIYDDETDE 306
Score = 35.4 bits (80), Expect = 0.003
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 26/126 (20%)
Query: 217 LGKLFSGSQSKNYFAYYDALVKKEKRKEVRIKKREEKIDSRE-IKREIKQEAIKEPKKAN 275
L KL + + A + V K++ +KK+E++I E IKR IK +
Sbjct: 168 LNKLTQSNTNTTNNANSASNVSNAKKEISEVKKQEQEIKRHENIKRRTGFRVIKRNDETE 227
Query: 276 QGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQE 335
T+N+ T +K Q A A FE+ +KE E+D+QE
Sbjct: 228 NETENSVTESKKPTQSA-------------------------AAIFEDIKKEWQEKDKQE 262
Query: 336 TEGRRK 341
T+ +K
Sbjct: 263 TKKTKK 268
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 42.7 bits (99), Expect = 2e-05
Identities = 46/164 (28%), Positives = 68/164 (41%), Gaps = 26/164 (15%)
Query: 298 AKEERRYLRDERKKAKA----------TKKAMEFEEREKEHDERDEQETEGRRKALEMDK 347
AK RY+ D KA K ME E + +R Q E ++ALEM+
Sbjct: 371 AKLSSRYITDRFLPDKAIDLIDEGAAQLKMQMESEPAKLSSVKRSIQRLEMEKQALEMEN 430
Query: 348 GDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKR 407
KE+ + QE +KE SD Q E Q EN + + K E
Sbjct: 431 ----------KESNHKRMQEILKELSDLKEEKIQLEAQ---FENEKEVFKEISRLKMEME 477
Query: 408 RLKEEKKKAKAE---QRAREFEQRAREHQERDEKELEERRKALE 448
LK+E ++ K Q+A E E +E+ EKEL+ + + ++
Sbjct: 478 GLKKEAERFKRNGDYQQAAEIEYSKIPEKEKKEKELQHKWETMQ 521
Score = 34.3 bits (77), Expect = 0.007
Identities = 44/195 (22%), Positives = 75/195 (37%), Gaps = 8/195 (4%)
Query: 262 EIKQEAIKEPKKANQGTQNAPTLE-EKNYQKAERKLDAKEERRYLRDERKKAKATKKAME 320
++K + EP K + ++ LE EK + E K + + + E K K +E
Sbjct: 397 QLKMQMESEPAKLSSVKRSIQRLEMEKQALEMENKESNHKRMQEILKELSDLKEEKIQLE 456
Query: 321 FE-EREKE---HDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGN 376
+ E EKE R + E EG +K E K + ++ E + ++E ++
Sbjct: 457 AQFENEKEVFKEISRLKMEMEGLKKEAERFKRNGDYQQAAEIEYSKIPEKEKKEKELQHK 516
Query: 377 NATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERD 436
T Q QN NA E N + + +K + R E ++
Sbjct: 517 WETMQ---QNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVLNIESELQKRVVGQ 573
Query: 437 EKELEERRKALEAGK 451
EK L+ KA++ K
Sbjct: 574 EKALKAIAKAIKRNK 588
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 42.0 bits (97), Expect = 3e-05
Identities = 35/130 (26%), Positives = 67/130 (50%), Gaps = 9/130 (6%)
Query: 320 EFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNAT 379
+F+E + + + T G++ ++K + K+E + KENE++IK EA + T
Sbjct: 95 QFKEEQLRNSQVKGIFTLGKKTNENLEKIESKKESIN-KENEKKIKNEASLQV-----LT 148
Query: 380 QQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQR-AREFEQRAREHQERDEK 438
Q+ EK+ ++ K K N +E K L+ K+K K + + +EFE +H + +
Sbjct: 149 QKKEKEEKDFTDSCWKNLYKKNEEEFKEILEGFKRKEKFKGKILKEFEN--DKHNQSEIV 206
Query: 439 ELEERRKALE 448
LE+ ++ +E
Sbjct: 207 GLEKLKEKIE 216
Score = 29.3 bits (64), Expect = 0.22
Identities = 31/150 (20%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 302 RRYLRDERKKAKATKKAM--EFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKE 359
R Y++D K+ + EF+++ + + + QE+ K ++ D +K +E ++ +
Sbjct: 274 REYVKDNSICPFCQKETITEEFKKQLESYFDTSYQESTDTIKKMKEDYTNKTDEALERLD 333
Query: 360 NEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAE 419
+ +Q + D N + E + + N QK +K SKE R K + K + +
Sbjct: 334 EIIKTEQNNSQTKLDTENLKRIIETLRSKIKANQQKMIDK--SKEMSRNFKLDSNKNEID 391
Query: 420 QRAREFEQRARE---HQERDEKELEERRKA 446
++ ++A E + K++E+++K+
Sbjct: 392 -AIKDLIKKANEQITNHNETIKDIEKQKKS 420
Score = 28.1 bits (61), Expect = 0.48
Identities = 29/109 (26%), Positives = 47/109 (42%), Gaps = 15/109 (13%)
Query: 236 LVKKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERK 295
L K E +KE K+ E+KI + + + Q+ KE K L +KN ++ +
Sbjct: 120 LEKIESKKESINKENEKKIKNEASLQVLTQKKEKEEKDFTDSCWK--NLYKKNEEEFKEI 177
Query: 296 LDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALE 344
L+ + R E+ K K K E E+D+ ++ E G K E
Sbjct: 178 LEG-----FKRKEKFKGKILK--------EFENDKHNQSEIVGLEKLKE 213
Score = 27.3 bits (59), Expect = 0.82
Identities = 20/93 (21%), Positives = 45/93 (47%), Gaps = 1/93 (1%)
Query: 272 KKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDER 331
KK N+ + + +E ++ E+K+ + + L +++K + ++ K+++E
Sbjct: 114 KKTNENLEKIESKKESINKENEKKIKNEASLQVLTQKKEKEEKDFTDSCWKNLYKKNEEE 173
Query: 332 DEQETEGRRKALEMDKGDKKEERVKPKENEREI 364
++ EG ++ E KG +E K N+ EI
Sbjct: 174 FKEILEGFKRK-EKFKGKILKEFENDKHNQSEI 205
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 41.2 bits (95), Expect = 5e-05
Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 12/135 (8%)
Query: 312 AKATKKAMEFEEREKEH-DERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIK 370
A T+ EF + +K D D +E E ++KALE +K K++ + K+ + K+E K
Sbjct: 116 ALMTRDYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAK 175
Query: 371 EPSDGNNATQ-QGEKQNAPKENNAQK--EENKPNSKEEKRRLKEEKKKAKAEQRAREFEQ 427
++ N T QN N + ++ + N ++ RL++ +++A+A
Sbjct: 176 NRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQA--------N 227
Query: 428 RAREHQERDEKELEE 442
++ +E ++K+ EE
Sbjct: 228 ALKQIEELNKKQAEE 242
Score = 40.4 bits (93), Expect = 9e-05
Identities = 54/201 (26%), Positives = 80/201 (38%), Gaps = 41/201 (20%)
Query: 238 KKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLD 297
K+EKRKE R K R E A+ P Q N L E Q+ E +LD
Sbjct: 165 KREKRKEERAKNR--------ANLENLTNAMSNP----QNLSNNKNLSELIKQQRENELD 212
Query: 298 AKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKP 357
E L D +++A+A + EE K+ E ++ + +++ DK K P
Sbjct: 213 QMER---LEDMQEQAQA-NALKQIEELNKKQAEEAVRQRAKDKISIKTDKSQK-----SP 263
Query: 358 KENEREIKQEAIKEPSDG----------NNATQQGEKQNAPKENNAQK----EENKPNSK 403
++N E+ PSD N A Q + A K+N A + P
Sbjct: 264 EDNSIEL------SPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTVKLEYPQRH 317
Query: 404 EEKRRLKEEKKKAKAEQRARE 424
E ++EE KK + +R RE
Sbjct: 318 EVSSVIEEELKKREEAKRQRE 338
Score = 37.4 bits (85), Expect = 8e-04
Identities = 32/126 (25%), Positives = 58/126 (45%), Gaps = 18/126 (14%)
Query: 310 KKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAI 369
K+ + KKA+E E+ KE ++ +++ +R KEER K + N + A+
Sbjct: 139 KELEEQKKALEKEKEAKEQAQKAQKDKREKR----------KEERAKNRANLENL-TNAM 187
Query: 370 KEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKR----RLKEEKKKAKAEQRAREF 425
P + +N E +EN + E + +E+ + + EE K +AE+ R
Sbjct: 188 SNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVR-- 245
Query: 426 EQRARE 431
QRA++
Sbjct: 246 -QRAKD 250
Score = 32.3 bits (72), Expect = 0.025
Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 9/131 (6%)
Query: 300 EERRYLRDERKKAKATKKAMEFEEREKEHDERD------EQETEGRRKALEMDKGDKKEE 353
EE++ ++ K+AK + + ++REK +ER E T + E
Sbjct: 142 EEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSE 201
Query: 354 RVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEK 413
+K +RE + + ++ D Q + + N Q EE ++K +K +K
Sbjct: 202 LIK---QQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVRQRAKDKISIKTDK 258
Query: 414 KKAKAEQRARE 424
+ E + E
Sbjct: 259 SQKSPEDNSIE 269
Score = 30.4 bits (67), Expect = 0.097
Identities = 22/64 (34%), Positives = 29/64 (44%), Gaps = 11/64 (17%)
Query: 400 PNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQE-----------RDEKELEERRKALE 448
PNS + K K E+ A F R++QE D KELEE++KALE
Sbjct: 90 PNSNHIFIQPKSVKSNLMFEKEAVNFALMTRDYQEFLKTKKLIVDAPDPKELEEQKKALE 149
Query: 449 AGKK 452
K+
Sbjct: 150 KEKE 153
Score = 29.6 bits (65), Expect = 0.16
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 405 EKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRK 445
+ + L+E+KK + E+ A+E Q+A+ +++ EK EER K
Sbjct: 137 DPKELEEQKKALEKEKEAKEQAQKAQ--KDKREKRKEERAK 175
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 40.8 bits (94), Expect = 7e-05
Identities = 29/101 (28%), Positives = 52/101 (50%), Gaps = 11/101 (10%)
Query: 307 DERKK--AKATKKAMEFEEREKEHD---ERDEQETEGRRKALEMDKGDKKEERVKPKENE 361
D+ KK A+A K+A +R + E++EQ+TE ++ E +K ++E+ K ++ +
Sbjct: 97 DQSKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEK 156
Query: 362 REIKQEAIKEPSDGNN------ATQQGEKQNAPKENNAQKE 396
++ +QE K + N QQ +Q K NN QK+
Sbjct: 157 QKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKD 197
Score = 39.7 bits (91), Expect = 2e-04
Identities = 21/90 (23%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 365 KQEAIKEPSDGNNATQQGEKQNAPKENNAQK-EENKPNSKEEKRRLKEEKKKAKAE-QRA 422
K+E + + NA + K E QK E+ K +++EK++ ++EK+K + E Q+
Sbjct: 100 KKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKT 159
Query: 423 REFEQRAREHQERDEKELEERRKALEAGKK 452
+ +Q+ + ++ ++E+ ++ E K+
Sbjct: 160 EQEKQKTSNIETNNQIKVEQEQQKTEQEKQ 189
Score = 36.2 bits (82), Expect = 0.002
Identities = 26/126 (20%), Positives = 58/126 (45%), Gaps = 19/126 (15%)
Query: 260 KREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAM 319
K+E+ Q + ++ ++ LE++ + + K ++E++ E++K + K+
Sbjct: 100 KKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKT 159
Query: 320 EFE---------------EREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREI 364
E E E+E++ E+++Q+T +K D +K E+ + N+ I
Sbjct: 160 EQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQK----DLVNKAEQNCQENHNQFFI 215
Query: 365 KQEAIK 370
K+ IK
Sbjct: 216 KKLGIK 221
Score = 35.8 bits (81), Expect = 0.002
Identities = 40/180 (22%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 269 KEPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEH 328
KE +A + +NA K+ + E++ + K E+ + E++K K T++ + E+EK+
Sbjct: 101 KEVAQAQKEAENARDRANKSGIELEQE-EQKTEQEKQKTEQEKQK-TEQEKQKTEQEKQK 158
Query: 329 DERDEQETEG--RRKALEMDKGDKKEERVKPKEN--EREIKQEAIKEPSDGNN---ATQQ 381
E+++Q+T +++++ +K E+ K K N ++++ +A + + +N +
Sbjct: 159 TEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQENHNQFFIKKL 218
Query: 382 GEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELE 441
G K E A+ + KP + + K ++Q + +A+E +KELE
Sbjct: 219 GIKAGIAIEIEAECKTPKPTKTNQTP--IQPKHLPNSKQPHSQRGSKAQELIAYLQKELE 276
Score = 34.3 bits (77), Expect = 0.007
Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 12/175 (6%)
Query: 238 KKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLD 297
+K+K ++ + K +EK + I+ + + +E +K Q Q ++ KAE+
Sbjct: 148 EKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQ 207
Query: 298 AKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDK------GDKK 351
+ +++ KA A+E E K +T + K L K G K
Sbjct: 208 ENHNQFFIKKLGIKAGI---AIEIEAECKTPKPTKTNQTPIQPKHLPNSKQPHSQRGSKA 264
Query: 352 EERVKPKENERE---IKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSK 403
+E + + E E Q+AI + D + + P++ NA +E K N K
Sbjct: 265 QELIAYLQKELESLPYSQKAIAKQVDFYRPSSIAYLELDPRDFNATEEWQKENLK 319
>ref|NP_223646.1| putative [Helicobacter pylori J99]
Length = 150
Score = 39.3 bits (90), Expect = 2e-04
Identities = 36/138 (26%), Positives = 58/138 (41%), Gaps = 19/138 (13%)
Query: 247 IKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKL------DAKE 300
I K EKI E EI ++ I + + + + P LE K + K +
Sbjct: 5 ITKLPEKIKELENSIEITKKNIAKYTRLVEQKPSYPRLEYLQALKWDHKTLIDDLAKMSK 64
Query: 301 ERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKA-------------LEMDK 347
+R Y K+K K + E+R +ER+EQ +G K+ E++K
Sbjct: 65 DRNYKPAFNPKSKEVLKNLNAEKRASLENEREEQGVKGNTKSHDEIEPATEQVIEKEIEK 124
Query: 348 GDKKEERVKPKENEREIK 365
GD+ V ENE+E++
Sbjct: 125 GDEIANNVDYYENEQEVE 142
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 39.3 bits (90), Expect = 2e-04
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 289 YQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEH----DERDEQETEGRRKA-L 343
Y + + K++A E R+ KK + K+ E + +E ++ ++ +++ET+ +RK
Sbjct: 19 YAEPDSKVEALEGRKQESSLDKKIRQELKSKELKNKELKNKDLKNKEEKKETKAKRKPRA 78
Query: 344 EMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSK 403
E+ GD K K + + + ++ NNA + EK P+ K E P+S+
Sbjct: 79 EVHHGDAKNPTPKITPPKIKGSSKGVQNQGVQNNAPKPEEKDTTPQATEKNK-ETSPSSQ 137
Score = 24.3 bits (51), Expect = 6.9
Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 5/48 (10%)
Query: 381 QGEKQNAPKENNAQ-----KEENKPNSKEEKRRLKEEKKKAKAEQRAR 423
+G KQ + + + KE K + + KEEKK+ KA+++ R
Sbjct: 30 EGRKQESSLDKKIRQELKSKELKNKELKNKDLKNKEEKKETKAKRKPR 77
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 38.5 bits (88), Expect = 4e-04
Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 308 ERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQE 367
E++K +A K ++ E+ E++ E++ Q+T LE +ER K ++ E+
Sbjct: 130 EQEKKEANKSGIKLEQ-ERQKTEQERQKTNKSEIELE-------QERQKTNKSGIELANS 181
Query: 368 AIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNS-----KEEKRRLKEEKKKAKAEQRA 422
IK + Q+ +K N + Q+++ N+ KE+K +KE ++ + E+
Sbjct: 182 QIKAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQ-EKHG 240
Query: 423 REFEQRAR 430
+ F ++AR
Sbjct: 241 QLFIKKAR 248
Score = 38.5 bits (88), Expect = 4e-04
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 317 KAMEFEEREKEHD------ERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIK 370
K +E E+ +KE + E++ Q+TE R+ + + ++ER K ++ E+ IK
Sbjct: 125 KQIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQIK 184
Query: 371 EPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAK-AEQRARE 424
+ Q EKQ A K +++ + ++ +KE+K K EQ +E
Sbjct: 185 AEQERQKTEQ--EKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQE 237
Score = 36.6 bits (83), Expect = 0.001
Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 330 ERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPK 389
E++++E LE ++ ++ER K ++E E++QE K G K +
Sbjct: 130 EQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQIKAEQER 189
Query: 390 ENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKAL 447
+ Q+++ K K ++ E++K K R+ + ++ + E+ +E+ L
Sbjct: 190 QKTEQEKQ-----KANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQEKHGQL 242
Score = 35.8 bits (81), Expect = 0.002
Identities = 38/178 (21%), Positives = 83/178 (46%), Gaps = 22/178 (12%)
Query: 240 EKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGT----QNAPTLEEKNYQKAERK 295
+K+ E+ +K+E ++++E +Q+ +E +K N+ Q + + A +
Sbjct: 124 DKQIELEQEKKEANKSGIKLEQE-RQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQ 182
Query: 296 LDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGD---KKE 352
+ A++ER+ + E++K KA K +E E++ +Q+T ++ L ++ D + E
Sbjct: 183 IKAEQERQ--KTEQEKQKANKSEIELEQQ--------KQKTINTQRDLIKEQKDFIKETE 232
Query: 353 ERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQ----KEENKPNSKEEK 406
+ + K + IK+ IK A + + PK + ++ PNSK+ +
Sbjct: 233 QNCQEKHGQLFIKKARIKTGITTGIAIEIEAECKTPKPAKTNQTPIQPKHLPNSKQPR 290
Score = 32.3 bits (72), Expect = 0.025
Identities = 35/179 (19%), Positives = 74/179 (40%), Gaps = 35/179 (19%)
Query: 298 AKEERRYLRDERKKAK---------ATKKAMEFEEREKEHDERDEQE------------- 335
AK+ R ++ KK+ A K+A E +++ ++ ++ E+E
Sbjct: 50 AKKVRELVKKHPKKSSVALVVLTHIACKRAKELDDKVQDKSKQAEKENQINWWKYSGLTI 109
Query: 336 ----------TEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQ 385
T K +E+++ K+ + K + K E ++ ++ + + E+Q
Sbjct: 110 AASLLLAACSTGDIDKQIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQ 169
Query: 386 NAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERR 444
K N + E K E+ R K E++K KA + E EQ+ ++ ++E++
Sbjct: 170 ---KTNKSGIELANSQIKAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQK 225
Score = 26.2 bits (56), Expect = 1.8
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 239 KEKRKEVRIKKREEKID-SREIKREIKQEA-IKEPKKANQGTQNAPTLEEKNYQKAERKL 296
+EK ++ IKK K + I EI+ E +P K NQ L +++R
Sbjct: 236 QEKHGQLFIKKARIKTGITTGIAIEIEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGS 295
Query: 297 DAKEERRYLRDERK----KAKATKKAMEFEEREK----EHDERDEQETEGRRK 341
A+E YL+ E + KA K ++F + E D RD + TE +K
Sbjct: 296 KAQELIAYLQKELESLPYSQKAIAKQVDFYKPSSIAYLELDPRDFKVTEEWQK 348
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 37.4 bits (85), Expect = 8e-04
Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 14/171 (8%)
Query: 227 KNYFAYYDALVK----KEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAP 282
K Y+A A++K K K E + K E + R +E K + E K T
Sbjct: 29 KIYYARGQAILKGASAKAKLMEFQAKSFVEAEEMRMKSQECKLQQQYENKNLQLQTHFDK 88
Query: 283 TLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKA 342
+ +A+ K ++E+RYL E+K+ + ++ +E +ERE +R + E + KA
Sbjct: 89 KEAHLKHLEAQHKEFVRDEKRYLEKEKKELEKERQILE-QERENFKKQRAICK-EAQAKA 146
Query: 343 LE-------MDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQN 386
L+ K + K ++ E E E ++ A+ + A ++G+K++
Sbjct: 147 LDAMLNYMAYTKDEIKSMILEQLEEELEAQKSALIRRYE-KEAKEEGKKKS 196
Score = 32.3 bits (72), Expect = 0.025
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 347 KGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEE--------- 397
KG + ++ + + ++ E ++ S QQ E +N + + K+E
Sbjct: 40 KGASAKAKLMEFQAKSFVEAEEMRMKSQECKLQQQYENKNLQLQTHFDKKEAHLKHLEAQ 99
Query: 398 NKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALEA 449
+K ++EKR L++EKK+ + E++ E E+ + Q KE + KAL+A
Sbjct: 100 HKEFVRDEKRYLEKEKKELEKERQILEQERENFKKQRAICKEAQ--AKALDA 149
Score = 30.8 bits (68), Expect = 0.074
Identities = 43/155 (27%), Positives = 61/155 (38%), Gaps = 20/155 (12%)
Query: 310 KKAKATKKAMEF---------EEREKEHDERDEQETEGRRKALEMDKGDKKEERVKP--- 357
K A A K MEF E R K + + +Q+ E + L+ DKKE +K
Sbjct: 40 KGASAKAKLMEFQAKSFVEAEEMRMKSQECKLQQQYENKNLQLQTHF-DKKEAHLKHLEA 98
Query: 358 --KENEREIKQEAIKEPSDGNNATQ--QGEKQNAPKENNAQKEENKPNSKEEKRRL---K 410
KE R+ K+ KE + Q + E++N K+ KE + K
Sbjct: 99 QHKEFVRDEKRYLEKEKKELEKERQILEQERENFKKQRAICKEAQAKALDAMLNYMAYTK 158
Query: 411 EEKKKAKAEQRAREFEQRAREHQERDEKELEERRK 445
+E K EQ E E + R EKE +E K
Sbjct: 159 DEIKSMILEQLEEELEAQKSALIRRYEKEAKEEGK 193
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 37.0 bits (84), Expect = 0.001
Identities = 26/90 (28%), Positives = 45/90 (49%), Gaps = 12/90 (13%)
Query: 355 VKPKENEREIKQEAIKEPSDGNNATQQGEKQNA------PKENNAQKEENKPNSKEEKRR 408
V+ E ER Q + P + NAT +QN P + QK+E K +E K+
Sbjct: 48 VEKSETER---QNSTFSPKEEANATTTATEQNPTKDTVPPLDTATQKQEIK---QEIKQE 101
Query: 409 LKEEKKKAKAEQRAREFEQRAREHQERDEK 438
+K+E K+ ++ +E +Q ++ QE++ K
Sbjct: 102 IKQEIKQEIKQEIKQEIKQETKQEQEKENK 131
Score = 34.7 bits (78), Expect = 0.005
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 237 VKKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKL 296
+K+E ++E++ + ++E +EIK+EIKQE +E +K N+ QN+ + + + + L
Sbjct: 94 IKQEIKQEIKQEIKQEI--KQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTPTTPL 151
Query: 297 DAKEERRY 304
K+ Y
Sbjct: 152 MGKKPLEY 159
Score = 32.7 bits (73), Expect = 0.019
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 20/118 (16%)
Query: 281 APTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRR 340
+P +E+ ++ KEE A AT A E + D +T ++
Sbjct: 45 SPNVEKSETERQNSTFSPKEE----------ANATTTATE---QNPTKDTVPPLDTATQK 91
Query: 341 KALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEEN 398
+ ++ + + ++ +K +E ++EIKQE +E Q+ EK+N PK+N+ +N
Sbjct: 92 QEIKQEIKQEIKQEIK-QEIKQEIKQEIKQETK------QEQEKENKPKQNSVSPVQN 142
Score = 26.6 bits (57), Expect = 1.4
Identities = 31/146 (21%), Positives = 57/146 (38%), Gaps = 9/146 (6%)
Query: 198 VTKTSTPFFSRVEGIDAGTLGKLFSGSQSKNYFAYYDALVKKEKRKEVRIKKREEKIDSR 257
V K S P VE + FS + N ++ + + + +
Sbjct: 37 VKKDSAPMSPNVEKSETERQNSTFSPKEEANA----TTTATEQNPTKDTVPPLDTATQKQ 92
Query: 258 EIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKAT-- 315
EIK+EIKQE IK+ K + ++++ Q+ E++ K+ +K T
Sbjct: 93 EIKQEIKQE-IKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTPTTPL 151
Query: 316 --KKAMEFEEREKEHDERDEQETEGR 339
KK +E++ + R T+G+
Sbjct: 152 MGKKPLEYKVAVSGVNVRAFPSTKGK 177
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 37.0 bits (84), Expect = 0.001
Identities = 36/139 (25%), Positives = 56/139 (39%), Gaps = 10/139 (7%)
Query: 270 EPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFE-EREKEH 328
E K GT+ AP E K E K AKEE + + + + + E + + +
Sbjct: 135 EGAKETSGTKEAPEKEVKK----ENKEKAKEEVKANKTPTTENLTSDNPLADEPDLDYAN 190
Query: 329 DERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAP 388
+E E E R + + DK+ K +E++ + KQE T + E + P
Sbjct: 191 MSAEEVEAEIERLLNKRQEADKERRAQKKQEDQAKPKQEVAPAKETPKTETPKTETRKVP 250
Query: 389 K-----ENNAQKEENKPNS 402
K + A EENK S
Sbjct: 251 KAETKAKAKADTEENKAPS 269
Score = 32.7 bits (73), Expect = 0.019
Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 317 KAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGN 376
K E EE K+ Q EG ++ + +KE + KEN+ + K+E
Sbjct: 115 KENEIEEVVKKLQAITSQNLEGAKETSGTKEAPEKEVK---KENKEKAKEEV-------- 163
Query: 377 NATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERD 436
A + +N +N E + + ++ E ++ +++ + E+RA++ QE
Sbjct: 164 KANKTPTTENLTSDNPLADEPDLDYANMSAEEVEAEIERLLNKRQEADKERRAQKKQEDQ 223
Query: 437 EKELEERRKALEAGK 451
K +E A E K
Sbjct: 224 AKPKQEVAPAKETPK 238
Score = 30.8 bits (68), Expect = 0.074
Identities = 35/130 (26%), Positives = 56/130 (42%), Gaps = 25/130 (19%)
Query: 257 REIKREIKQEAIKEPKKANQG------TQNAPTLEEKNYQKA-----------ERKLDAK 299
+E+K+E K++A KE KAN+ T + P +E + A ER L+ +
Sbjct: 149 KEVKKENKEKA-KEEVKANKTPTTENLTSDNPLADEPDLDYANMSAEEVEAEIERLLNKR 207
Query: 300 EERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKE 359
+E R +KK + K + KE + + +TE R K K E + K K
Sbjct: 208 QEADKERRAQKKQEDQAKPKQEVAPAKETPKTETPKTETR-------KVPKAETKAKAKA 260
Query: 360 NEREIKQEAI 369
+ E K +I
Sbjct: 261 DTEENKAPSI 270
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 36.6 bits (83), Expect = 0.001
Identities = 27/102 (26%), Positives = 50/102 (48%), Gaps = 3/102 (2%)
Query: 350 KKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRL 409
K+E + KPK+ E + K+E KE + + + PK K KP K E+ +
Sbjct: 74 KEEPKEKPKKEEPK-KEEPKKETKPKPKPKPKPKPKPKPKPKPEPKP--KPEPKVEEPKK 130
Query: 410 KEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALEAGK 451
+E K++ K E+ E ++++ Q + ++E+ K E+ K
Sbjct: 131 EEPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQEESNK 172
Score = 36.2 bits (82), Expect = 0.002
Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 310 KKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKK-----EERVKPKENEREI 364
+ AK ++ E ++E+ E ++ET+ + K K K E + KP+ E
Sbjct: 69 ESAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPKPEPKPKPEPKVEEP 128
Query: 365 KQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKE 411
K+E KE A ++ ++++ PK+ + + + +EE + E
Sbjct: 129 KKEEPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQEESNKTSE 175
Score = 35.4 bits (80), Expect = 0.003
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 280 NAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGR 339
N + + N + A+ K + KE+ + ++E KK + K+ + + + + + + + +
Sbjct: 59 NTNSNTKTNAESAKPKEEPKEKPK--KEEPKKEEPKKET----KPKPKPKPKPKPKPKPK 112
Query: 340 RKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENK 399
K K + K E K +E + E K+E KE + + +Q ++ KE + Q+E NK
Sbjct: 113 PKPEPKPKPEPKVEEPKKEEPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQEESNK 172
Score = 33.5 bits (75), Expect = 0.011
Identities = 31/122 (25%), Positives = 54/122 (43%), Gaps = 5/122 (4%)
Query: 313 KATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEP 372
K ++ + +E KE +++E + E +K + K + + KPK K E +P
Sbjct: 65 KTNAESAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKP---KPEPKPKP 121
Query: 373 SDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKE-EKKKAKAEQRAREFEQRARE 431
++ E + PK+ A KEE K S ++ K+ K+K K E+ + E E
Sbjct: 122 EPKVEEPKKEEPKEEPKKEEA-KEEAKEKSVPKQVTTKDIVKEKDKQEESNKTSEGATSE 180
Query: 432 HQ 433
Q
Sbjct: 181 AQ 182
Score = 32.7 bits (73), Expect = 0.019
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 373 SDGNNATQQGEKQNAPKENNAQKEE----NKPNSKEEKRRLKEEKKKAKAEQRAREFEQR 428
++ +A + E + PK+ +KEE KP K + + + K K K E + + E +
Sbjct: 66 TNAESAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPKPEPKPKP-EPK 124
Query: 429 AREHQERDEKELEERRKALEAGKK 452
E ++ + KE ++ +A E K+
Sbjct: 125 VEEPKKEEPKEEPKKEEAKEEAKE 148
Score = 32.0 bits (71), Expect = 0.033
Identities = 22/93 (23%), Positives = 42/93 (44%), Gaps = 13/93 (13%)
Query: 353 ERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEE 412
E KPKE +E ++ +EP K+ PK+ K + KP K + + +
Sbjct: 69 ESAKPKEEPKEKPKK--EEP-----------KKEEPKKETKPKPKPKPKPKPKPKPKPKP 115
Query: 413 KKKAKAEQRAREFEQRAREHQERDEKELEERRK 445
+ K K E + E ++ + + + E+ EE ++
Sbjct: 116 EPKPKPEPKVEEPKKEEPKEEPKKEEAKEEAKE 148
Score = 32.0 bits (71), Expect = 0.033
Identities = 17/70 (24%), Positives = 35/70 (49%)
Query: 376 NNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQER 435
N+ T+ + PKE +K + + KEE ++ + K K K + + + + E + +
Sbjct: 61 NSNTKTNAESAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPKPEPKPK 120
Query: 436 DEKELEERRK 445
E ++EE +K
Sbjct: 121 PEPKVEEPKK 130
Score = 31.2 bits (69), Expect = 0.057
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 239 KEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDA 298
KEK K+ KK E K +E K + K + +PK + E ++ +++
Sbjct: 78 KEKPKKEEPKKEEPK---KETKPKPKPKPKPKPKPKPKPKPEPKPKPEPKVEEPKKEEPK 134
Query: 299 KEERRYLRDERKKAKATKKAMEFEEREKEHDERDE 333
+E ++ E K K+ K + ++ KE D+++E
Sbjct: 135 EEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQEE 169
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 35.8 bits (81), Expect = 0.002
Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 34/167 (20%)
Query: 258 EIKREIKQEAIKEPKKANQGTQNAPTLEEKN--YQKAERKLDAKEERRYLRDERKKAKAT 315
E+K +++Q + KE T+NA L+EK+ K E+++D K + ++E K T
Sbjct: 36 ELKEDLRQLSEKEQSLRILQTENARLLDEKSDLLNKKEKEIDEKLKNLAAKEEAFKTLQT 95
Query: 316 KKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVK--------------PKENE 361
+ EK+ + +E EG + ++ K K E P +N
Sbjct: 96 E--------EKKRLKNLIEENEGILREIKQAKDSKIGETYSKMKDSKSALILENLPTQNA 147
Query: 362 REIKQEAIKEPSDGNNATQQGEK---------QNAPKENNAQKEENK 399
EI A+K G + K Q PKEN KE K
Sbjct: 148 LEILM-ALKPQELGKILAKMDPKKAAALTELWQKPPKENKENKESQK 193
>ref|NP_222894.1| putative [Helicobacter pylori J99]
Length = 268
Score = 34.3 bits (77), Expect = 0.007
Identities = 28/135 (20%), Positives = 56/135 (40%), Gaps = 11/135 (8%)
Query: 315 TKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSD 374
T M+ K+ + DE E+ + DK DK + +K +E+E + + + +
Sbjct: 57 TDSGMQKIGNTKDEKKDDEFESLNMDSPKQEDKLDKVVDNIKKQESENSMPIQTDQAQME 116
Query: 375 GNNATQQGEKQ-----------NAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAR 423
++ E Q + KE+ A ++ P+ K + +E K KA+ A+
Sbjct: 117 MKTTEEKQESQKELKAVEPIPMSTQKESQAVAKKETPHKKPKVAPKDKEAHKDKAKHAAK 176
Query: 424 EFEQRAREHQERDEK 438
E + + +E +K
Sbjct: 177 EPKVKKEARKEVSKK 191
Score = 34.3 bits (77), Expect = 0.007
Identities = 30/138 (21%), Positives = 56/138 (39%), Gaps = 4/138 (2%)
Query: 286 EKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEM 345
+ QK D K++ + K K + + K+ + + + + +EM
Sbjct: 58 DSGMQKIGNTKDEKKDDEFESLNMDSPKQEDKLDKVVDNIKKQESENSMPIQTDQAQMEM 117
Query: 346 DKGDKKEERVKPKENEREIKQEAIKE-PSDGNNATQQGEKQNAPKENNAQKEENKPNSKE 404
++K+E K + I KE + T + + APK+ A K++ K +KE
Sbjct: 118 KTTEEKQESQKELKAVEPIPMSTQKESQAVAKKETPHKKPKVAPKDKEAHKDKAKHAAKE 177
Query: 405 ---EKRRLKEEKKKAKAE 419
+K KE KKA ++
Sbjct: 178 PKVKKEARKEVSKKANSK 195
Score = 30.0 bits (66), Expect = 0.13
Identities = 42/192 (21%), Positives = 80/192 (40%), Gaps = 30/192 (15%)
Query: 249 KREEKIDS--REIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLR 306
K+E+K+D IK++ + ++ P + +Q T EEK Q+++++L A E
Sbjct: 85 KQEDKLDKVVDNIKKQESENSM--PIQTDQAQMEMKTTEEK--QESQKELKAVEPIPMST 140
Query: 307 DERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQ 366
+ +A A K+ + + D+ ++ K KE +VK +E ++
Sbjct: 141 QKESQAVAKKETPHKKPKVAPKDKEAHKDKA---------KHAAKEPKVK-----KEARK 186
Query: 367 EAIKEPSDGNNAT-----QQGEKQNAPKENNAQKEENKPNSKEEKRRLKE-----EKKKA 416
E K+ + N T Q G + P + Q+ P+ E++ K K K
Sbjct: 187 EVSKKANSKTNLTKGHYLQVGVFAHTPNKAFLQEFNQFPHKIEDRGATKRYLIGPYKSKQ 246
Query: 417 KAEQRAREFEQR 428
+A A E ++
Sbjct: 247 EALMHADEVSKK 258
Score = 26.6 bits (57), Expect = 1.4
Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 351 KEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLK 410
K RV PKE + K GN ++ + + ++ K+E+K + + + +
Sbjct: 44 KSTRVAPKETFLQTDSGMQKI---GNTKDEKKDDEFESLNMDSPKQEDKLDKVVDNIKKQ 100
Query: 411 EEKKKAKAEQRAREFEQRAREHQERDEKELE 441
E + + + E + E ++ +KEL+
Sbjct: 101 ESENSMPIQTDQAQMEMKTTEEKQESQKELK 131
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 33.5 bits (75), Expect = 0.011
Identities = 30/129 (23%), Positives = 62/129 (47%), Gaps = 12/129 (9%)
Query: 310 KKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAI 369
+K KA K ++ +E E+D + +R + E++ E + + + +
Sbjct: 168 QKEKARKVDAIVLKKMEEQAEKDTKAAFQKRSSGELESHTDSPEFISSSKTQNSSNPDL- 226
Query: 370 KEPSDGNNATQQGEKQNAPKE-NNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQR 428
+P N K+ A KE + K+E KP ++KRRL +++K+ +A Q+ EFE++
Sbjct: 227 -DPMTNANTL----KETASKEPETSSKKEKKP---KKKRRLSKKEKQQQALQQ--EFEKQ 276
Query: 429 AREHQERDE 437
+ + ++
Sbjct: 277 ISDSSKSEK 285
Score = 30.8 bits (68), Expect = 0.074
Identities = 31/161 (19%), Positives = 67/161 (41%), Gaps = 20/161 (12%)
Query: 199 TKTSTPFFSRV-EGIDAGTLGKLFSGSQSKNYFAYYDALVKKEKRKEVR------IKKRE 251
T+ S P F+ + +G D G L + F G Y Y ++V+ ++++ R +KK E
Sbjct: 126 TELSLPLFNWLYKGSDFGALHEQF-GDMYDGYIKYLISMVRVSQKEKARKVDAIVLKKME 184
Query: 252 EKID-----------SREIKREIKQ-EAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAK 299
E+ + S E++ E I K N + + N K + +
Sbjct: 185 EQAEKDTKAAFQKRSSGELESHTDSPEFISSSKTQNSSNPDLDPMTNANTLKETASKEPE 244
Query: 300 EERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRR 340
+ + +KK + +KK + + ++E +++ ++ +
Sbjct: 245 TSSKKEKKPKKKRRLSKKEKQQQALQQEFEKQISDSSKSEK 285
Score = 26.9 bits (58), Expect = 1.1
Identities = 19/101 (18%), Positives = 43/101 (41%), Gaps = 2/101 (1%)
Query: 346 DKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEE 405
++ +K + K + E++ ++ TQ + NA + + + E
Sbjct: 185 EQAEKDTKAAFQKRSSGELESHTDSPEFISSSKTQNSSNPDLDPMTNANTLKETASKEPE 244
Query: 406 KRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKA 446
KE KK K ++R + E++ + Q+ EK++ + K+
Sbjct: 245 TSSKKE--KKPKKKRRLSKKEKQQQALQQEFEKQISDSSKS 283
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 33.5 bits (75), Expect = 0.011
Identities = 59/263 (22%), Positives = 105/263 (39%), Gaps = 33/263 (12%)
Query: 198 VTKTSTPFFSRVEGIDAGTLGKLFSGSQ---SKNYFAYYDALVKKEK---RKE------V 245
+TK +T F+ E + G S Q + N A +K EK KE
Sbjct: 67 LTKENTELFAENESLSVKISGLEHSNDQLWQNNNKLTKEKAELKTEKDILAKENTRLLAA 126
Query: 246 RIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYL 305
R + EEK + K +K+E + K + T+ L +N + + ER L
Sbjct: 127 RDRLTEEKRELTTEKERLKRENTELTHKITELTKENKALTTENDKLNHQVTALTNERDSL 186
Query: 306 RDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIK 365
ER + + A F E+ + E++ Q + K LE + K EN
Sbjct: 187 EQERAR---LQDAHGFLEKRCTNLEKENQRLTDKLKQLESAQ--------KSLENTNNQL 235
Query: 366 QEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREF 425
++A++ + N Q +++ A +++ ++E + S L+ + K+ + R
Sbjct: 236 RQALE---NSNVQLAQAKEKIAIEKSELEREIARLKS------LEGMEAKSDLDLHNRRL 286
Query: 426 EQRAREHQERDEKELEERRKALE 448
A E +R ++LEE AL+
Sbjct: 287 AS-ANEDLKRQNRKLEEENIALK 308
Score = 31.2 bits (69), Expect = 0.057
Identities = 32/146 (21%), Positives = 59/146 (39%), Gaps = 10/146 (6%)
Query: 283 TLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKA 342
TL EK + ++ + + + L DE + ++ + E E + D D+ + +
Sbjct: 3 TLIEKWFGFSQIREELEARISELEDENTELLREREYLAAETSELK-DANDQLRQKNDKLF 61
Query: 343 LEMDKGDKKEERVKPKENEREIKQEAIKEPSDG---NNATQQGEKQNAPKENNAQKEEN- 398
+ DK K+ + + +K ++ +D NN EK E + +EN
Sbjct: 62 ITKDKLTKENTELFAENESLSVKISGLEHSNDQLWQNNNKLTKEKAELKTEKDILAKENT 121
Query: 399 -----KPNSKEEKRRLKEEKKKAKAE 419
+ EEKR L EK++ K E
Sbjct: 122 RLLAARDRLTEEKRELTTEKERLKRE 147
>ref|NP_223183.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 443
Score = 33.1 bits (74), Expect = 0.015
Identities = 29/118 (24%), Positives = 56/118 (46%), Gaps = 10/118 (8%)
Query: 209 VEGIDAGTLGKLFSGSQSKNYFAYYDALVKKEKRKEVRIKKREEKIDSREIKREIKQEAI 268
VE I L L SG + Y ++L+K ++R + ++DSREI+ E+++++I
Sbjct: 130 VEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIA------QGELDSREIEIEVRKKSI 183
Query: 269 K----EPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFE 322
+ P + + +N + K K ++ L KE + L+ E +A++ E
Sbjct: 184 EIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAIKME 241
Score = 24.6 bits (52), Expect = 5.3
Identities = 20/71 (28%), Positives = 32/71 (44%), Gaps = 7/71 (9%)
Query: 385 QNAPKENNAQKEENKPNSKEEKRRL-------KEEKKKAKAEQRAREFEQRAREHQERDE 437
+N KE K E K K+ L EEKK+ A + ++ A+ + E
Sbjct: 114 ENEHKERLKDKIEEAVVEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSRE 173
Query: 438 KELEERRKALE 448
E+E R+K++E
Sbjct: 174 IEIEVRKKSIE 184
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 32.7 bits (73), Expect = 0.019
Identities = 23/105 (21%), Positives = 49/105 (45%), Gaps = 9/105 (8%)
Query: 331 RDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQ---QGEKQNA 387
RD+++ + R + + + +++E +K K N + ++ +P + + T+ Q + Q
Sbjct: 364 RDKRKYQKSRDFMRLKRLLEQDEAMKAKRNNMHLIEDTTPQPKNAISVTELLAQIKNQTP 423
Query: 388 PKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREH 432
KE A EE +E K +K K K + ++ A++H
Sbjct: 424 SKECRALNEEEVKTLEEVKNIIKTPKPLQK------DLKKNAKKH 462
>ref|NP_223629.1| putative [Helicobacter pylori J99]
Length = 487
Score = 32.7 bits (73), Expect = 0.019
Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 23/171 (13%)
Query: 241 KRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNA-PTLEEK------NYQKAE 293
K+ R K EE ++ I ++I K Q + + L++K N +
Sbjct: 143 KQSHYRPKHFEESVERLLILQKISALFPKTTTPLEQSSLSLWAKLQDKLDILILNPNDVK 202
Query: 294 RKLDAKEERRYLRDERKKAKATK----KAMEFEEREKEHDERDEQETEGRRKALEMDKGD 349
L+ +E ++Y + RK K +++ F+ ++ D ++ +E + K +DK
Sbjct: 203 ISLNEEEMKKYYENHRKDFKKPTSFKTRSLYFDASLEKTDLKELEEYYHKNKVSYLDKEG 262
Query: 350 KKE------ERVK-----PKENEREIKQE-AIKEPSDGNNATQQGEKQNAP 388
K + E+VK K NE+ ++ A+K+ + N TQ EK N+P
Sbjct: 263 KLQDFKSVQEQVKHDLNMQKANEKALRSYIALKKGNAQNYTTQDFEKNNSP 313
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 32.7 bits (73), Expect = 0.019
Identities = 39/201 (19%), Positives = 77/201 (37%), Gaps = 37/201 (18%)
Query: 279 QNAPTLEEKNYQKAERKLDAKEERRYLR------DERKKAKATKKAMEFEEREKEHDER- 331
Q A T E KN A L K + + D + A + E++E ++ E
Sbjct: 202 QAATTPENKNPLNASDHLALKTTQASINHTLTKNDAKNTANLSSVLQSLEKKEPQNKEHA 261
Query: 332 ----DEQETEGRRKALEMD--KGDKKEERVKPKENEREIKQEAIK--------------- 370
+E++T ++AL+M+ K DK + KP++ K + I
Sbjct: 262 NPPNNEKKTPPLKEALQMNAIKRDKTLSKKKPEKTPIHAKTQTIAPSATPENAPKIPLKT 321
Query: 371 ---------EPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQR 421
P +NA EK+ KE + KE+ K + + + ++ +
Sbjct: 322 LPLMPLIGANPPPNDNAPTPLEKEEKTKEISDNKEKAKETNSSAQSVQNTQASDKTSDNK 381
Query: 422 AREFEQRAREHQERDEKELEE 442
+ ++ R ++ ++E++E
Sbjct: 382 STTPKETIRHFTQQLKQEIQE 402
Score = 30.4 bits (67), Expect = 0.097
Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 8/110 (7%)
Query: 269 KEPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEH 328
K+ K+ + + PTL ++ Q + A + +L + A +A +H
Sbjct: 66 KDAKEDAKALEKTPTLPHQHAQNLAKDQQAPTLKDWLNHPKTHPTAPHEA--------QH 117
Query: 329 DERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNA 378
+ + ET + + K +KK V ++ + + P+ NNA
Sbjct: 118 ETHEANETNPKTPNETLSKNEKKPNEVASNAHQTNLPNKNPITPNHANNA 167
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 32.3 bits (72), Expect = 0.025
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 313 KATKKAMEFEEREKEHDERDEQETEGRRK----ALEMDKGDKKEERVKPKENER----EI 364
+A KA+E EER+K ++ ++ + G K A + +K + K E PKEN+ E+
Sbjct: 454 EAALKALE-EERKKALEQAEQGCSIGENKEEAVASKENKEENKTEAAAPKENQTENKTEV 512
Query: 365 KQEAIKEPS 373
K+E I+ P+
Sbjct: 513 KEEKIEVPT 521
Score = 32.0 bits (71), Expect = 0.033
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 341 KALEMDKGDKKEER-VKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENK 399
K+LE K +E +K E ER+ +A+++ G + + E+ A KEN KEENK
Sbjct: 442 KSLEDSKQSIVDEAALKALEEERK---KALEQAEQGCSIGENKEEAVASKEN---KEENK 495
Query: 400 PNSKEEKRRLKEEKKKAKAEQ 420
+ K E K + K E+
Sbjct: 496 TEAAAPKENQTENKTEVKEEK 516
Score = 30.4 bits (67), Expect = 0.097
Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 11/145 (7%)
Query: 151 DPKIANLRKA--CNVYSVGVIYIVTTNTLNILSCESFEILEKRELDTSGVTKTSTPFFS- 207
D +ANL ++ C + VG I+ L +L+ ES + + S V + +
Sbjct: 403 DNALANLCRSSFCITHEVGAEEILLGMLLKMLNIESTALKSLEDSKQSIVDEAALKALEE 462
Query: 208 -RVEGIDAGTLGKLFSGSQSKNYFAYYDALVKKEKRKEVRIKKREEKIDSREIKREIKQE 266
R + ++ G ++ +A+ KE ++E + + K + E K E+K+E
Sbjct: 463 ERKKALEQAEQGCSIGENKE-------EAVASKENKEENKTEAAAPKENQTENKTEVKEE 515
Query: 267 AIKEPKKANQGTQNAPTLEEKNYQK 291
I+ P K + + Y+K
Sbjct: 516 KIEVPTKTTYLLLEEAGINLETYEK 540
Score = 24.3 bits (51), Expect = 6.9
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 287 KNYQKAERKLDAKEERRYLRDERKKA--KATKKAMEFEERE-----KEHDERDEQETEGR 339
K+ + +++ + + + L +ERKKA +A + E +E KE+ E ++ E
Sbjct: 442 KSLEDSKQSIVDEAALKALEEERKKALEQAEQGCSIGENKEEAVASKENKEENKTEAAAP 501
Query: 340 RKALEMDKGDKKEERVK 356
++ +K + KEE+++
Sbjct: 502 KENQTENKTEVKEEKIE 518
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE [Helicobacter
pylori J99]
Length = 469
Score = 32.3 bits (72), Expect = 0.025
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 5/135 (3%)
Query: 244 EVRIKKREEKIDSREIKREIKQEAIKEPKK----ANQGTQNAPTLEEKNYQKAERKLDAK 299
EV+I K + + E K I+ + +P K +Q + P +K +KA+ K
Sbjct: 102 EVKILKDKLYVSIMEKKPLIRHQMTPKPPKHHALKHQTPKPTPKPIKKEAKKAKEKTTKH 161
Query: 300 EERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKE 359
++ + A K+ + E +KE +++ + E +K + + KKE K E
Sbjct: 162 AHSKHAHSPLNERSAKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEAE 221
Query: 360 NEREIKQEAIKEPSD 374
NE + Q I E +D
Sbjct: 222 NESK-NQIFIAEKND 235
Score = 27.3 bits (59), Expect = 0.82
Identities = 23/89 (25%), Positives = 37/89 (40%), Gaps = 3/89 (3%)
Query: 357 PKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKA 416
PK + IK+EA K + E +A+KE K KE ++ +K+
Sbjct: 140 PKPTPKPIKKEAKKAKEKTTKHAHSKHAHSPLNERSAKKEIPK---KEIPKKEIPKKEIP 196
Query: 417 KAEQRAREFEQRAREHQERDEKELEERRK 445
K E +E ++ +E +KE E K
Sbjct: 197 KKEIPKKEIPKKEIPKKEIPKKEAENESK 225
Score = 26.6 bits (57), Expect = 1.4
Identities = 19/96 (19%), Positives = 43/96 (44%)
Query: 350 KKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRL 409
KKE + ++ + + P + +A ++ K+ PK+ +KE K +++
Sbjct: 148 KKEAKKAKEKTTKHAHSKHAHSPLNERSAKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPK 207
Query: 410 KEEKKKAKAEQRAREFEQRAREHQERDEKELEERRK 445
KE KK ++ A + E+++ ++ +RK
Sbjct: 208 KEIPKKEIPKKEAENESKNQIFIAEKNDTWIKTKRK 243
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 31.6 bits (70), Expect = 0.043
Identities = 24/108 (22%), Positives = 52/108 (47%), Gaps = 5/108 (4%)
Query: 316 KKAMEFEEREKEHD---ERDEQETEGRRKALEMDKGDKKEERVKP-KENEREIKQEAIKE 371
K+ +EF + +++D + DE +E A + +++++ P +E +RE + ++
Sbjct: 71 KEQLEFYQTNRDYDPSLDNDENSSE-LLDAFTSSLENLEKQKINPIREQKRESGWQNNED 129
Query: 372 PSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAE 419
+ + + +K + ++N + K SKEEK E K+K E
Sbjct: 130 NKENSELEKAFKKDLSFSQSNPIPLDKKETSKEEKEEELESKEKEPKE 177
Score = 25.8 bits (55), Expect = 2.4
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 383 EKQNAPKENNAQKEENKPNSKEEKRRLK--------EEKKKAKAEQRAREFEQRAREHQE 434
+K+ + +NN +EN K K+ L +KK+ E++ E E + +E +E
Sbjct: 118 QKRESGWQNNEDNKENSELEKAFKKDLSFSQSNPIPLDKKETSKEEKEEELESKEKEPKE 177
Score = 25.0 bits (53), Expect = 4.1
Identities = 16/67 (23%), Positives = 35/67 (51%), Gaps = 2/67 (2%)
Query: 237 VKKEKRKEVRIKKREEKIDSREIKREIK--QEAIKEPKKANQGTQNAPTLEEKNYQKAER 294
++K+K +R +KRE + E +E ++A K+ +Q +E + ++ E
Sbjct: 107 LEKQKINPIREQKRESGWQNNEDNKENSELEKAFKKDLSFSQSNPIPLDKKETSKEEKEE 166
Query: 295 KLDAKEE 301
+L++KE+
Sbjct: 167 ELESKEK 173
Score = 24.3 bits (51), Expect = 6.9
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 385 QNAPKEN-NAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEER 443
+N K+ N +E+ + + + KE + KA ++ F Q ++ E EE+
Sbjct: 105 ENLEKQKINPIREQKRESGWQNNEDNKENSELEKAFKKDLSFSQSNPIPLDKKETSKEEK 164
Query: 444 RKALEAGKK 452
+ LE+ +K
Sbjct: 165 EEELESKEK 173
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 31.6 bits (70), Expect = 0.043
Identities = 19/64 (29%), Positives = 32/64 (49%)
Query: 356 KPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKK 415
KPK + + K+P+ + A ++ EK K +KEE K ++ +++ EEKK
Sbjct: 112 KPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVVEQKVEQKKIEEKKP 171
Query: 416 AKAE 419
K E
Sbjct: 172 VKKE 175
Score = 29.6 bits (65), Expect = 0.16
Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 7/124 (5%)
Query: 321 FEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQ 380
FE RE + + L + +G ++ P +N + + P
Sbjct: 44 FEHREDFFPSKPKLVKLNPENLLVLKRGHSQD----PSKNNPGAPKPTLAGPQKPPTPPT 99
Query: 381 QGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKEL 440
PK K E KP K E K+ K KA ++ + E++ ++++EK++
Sbjct: 100 PPTPPTPPKPIEKPKPEPKPKPKPEP---KKPNHKHKALKKVEKVEEKKVVEEKKEEKKV 156
Query: 441 EERR 444
E++
Sbjct: 157 VEQK 160
Score = 27.3 bits (59), Expect = 0.82
Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 26/157 (16%)
Query: 259 IKREIKQEAIKE----PKKANQGTQNAPTLEEKNYQKAERKLDAK---EERRYLRDERKK 311
+KR Q+ K PK G Q PT K K E + + E KK
Sbjct: 68 LKRGHSQDPSKNNPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKK 127
Query: 312 AKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKE 371
KA++ E+ +E +K +E +KKEE+ K E++++Q+ I+E
Sbjct: 128 PNHKHKALKKVEKVEE------------KKVVE----EKKEEK---KVVEQKVEQKKIEE 168
Query: 372 PSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRR 408
+ PKE ++EN + RR
Sbjct: 169 KKPVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQTRR 205
Score = 26.9 bits (58), Expect = 1.1
Identities = 16/58 (27%), Positives = 31/58 (52%), Gaps = 2/58 (3%)
Query: 384 KQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELE 441
K K N+ K K EEK+ ++E+K++ K + ++ EQ+ E ++ +KE +
Sbjct: 122 KPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVVE--QKVEQKKIEEKKPVKKEFD 177
Score = 25.0 bits (53), Expect = 4.1
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 4/35 (11%)
Query: 238 KKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPK 272
K E++K V KK E+K+ ++++++Q+ I+E K
Sbjct: 140 KVEEKKVVEEKKEEKKV----VEQKVEQKKIEEKK 170
Score = 24.3 bits (51), Expect = 6.9
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 383 EKQNAPKENNAQKEENKPNSKEE---KRRLKEEKKKAKAEQRAREFEQRAREHQERDEKE 439
EK + + E KPN K + K EEKK + ++ E++ Q+ ++K+
Sbjct: 111 EKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKK-----EEKKVVEQKVEQKK 165
Query: 440 LEERR 444
+EE++
Sbjct: 166 IEEKK 170
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 31.2 bits (69), Expect = 0.057
Identities = 20/66 (30%), Positives = 33/66 (49%), Gaps = 8/66 (12%)
Query: 350 KKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRL 409
K E PK ++E K EA +E N ++ K+N +NN KE +K ++ ++
Sbjct: 4 KANEEKAPKRAKQEAKTEATQE-----NKAKESNKEN---KNNKAKEGKIKEAKTKESKV 55
Query: 410 KEEKKK 415
KE K+
Sbjct: 56 KETAKE 61
Score = 31.2 bits (69), Expect = 0.057
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 230 FAYYDALVKKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNY 289
+AY DAL+ +E+R +K+ D + + ++ +PKK + ++ E K
Sbjct: 217 YAYKDALINRERR----VKELFRSFDDDD------ENSVSDPKKDDDSEEDEENEERKKV 266
Query: 290 QKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHD 329
+ K ++ + + K K KA+E EKE +
Sbjct: 267 VSEKDKKRVEKVQESFKALDKAKKEWLKALEAPIDEKEDE 306
Score = 26.6 bits (57), Expect = 1.4
Identities = 58/270 (21%), Positives = 104/270 (38%), Gaps = 49/270 (18%)
Query: 222 SGSQSKNYFAYYDALVKKEKRKEVRIKKREE------KIDSREIKREIKQEAIKEP---K 272
S ++KN A + +K+ K KE ++K+ + K+ E E+ ++ + +
Sbjct: 31 SNKENKNNKAK-EGKIKEAKTKESKVKETAKEPIPVKKLSFNEALEELFANSLSDCVSYE 89
Query: 273 KANQGTQNAPTLEE-----KNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKE 327
Q + PTL + + QK ++KL + E KK A K EE++K
Sbjct: 90 SIIQISAKVPTLAQIKKIKELCQKYQKKLVSSSEYA------KKLNAIDKIKNTEEKQKV 143
Query: 328 HDER--DEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGE-- 383
DE D + + LE + D + + IK + E + + + GE
Sbjct: 144 LDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGD--IKLLSKDEEIELSKQIRLGEDI 201
Query: 384 ------------------KQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREF 425
K KE + +++ + + KK +E+ E
Sbjct: 202 ILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDDENSVSDPKKDDDSEED-EEN 260
Query: 426 EQRAREHQERDEKELE---ERRKALEAGKK 452
E+R + E+D+K +E E KAL+ KK
Sbjct: 261 EERKKVVSEKDKKRVEKVQESFKALDKAKK 290
Score = 25.4 bits (54), Expect = 3.1
Identities = 21/82 (25%), Positives = 41/82 (49%), Gaps = 8/82 (9%)
Query: 286 EKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALE- 344
E+ ++ R D +E + KK +++ E EER+K E+D++ E +++ +
Sbjct: 227 ERRVKELFRSFDDDDENSV--SDPKKDDDSEEDEENEERKKVVSEKDKKRVEKVQESFKA 284
Query: 345 MDKGDKK-----EERVKPKENE 361
+DK K+ E + KE+E
Sbjct: 285 LDKAKKEWLKALEAPIDEKEDE 306
Score = 25.0 bits (53), Expect = 4.1
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 259 IKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKA 318
+K++ +E K PK+A Q + T E K AKE + ++ + K K+A
Sbjct: 1 MKKKANEE--KAPKRAKQEAKTEATQENK----------AKESNKENKNNKAKEGKIKEA 48
Query: 319 MEFEEREKE 327
E + KE
Sbjct: 49 KTKESKVKE 57
Score = 25.0 bits (53), Expect = 4.1
Identities = 20/77 (25%), Positives = 35/77 (44%), Gaps = 16/77 (20%)
Query: 355 VKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKK 414
+K K NE + + A +Q K A +EN A K ++KE K +E K
Sbjct: 1 MKKKANEEKAPKRA-----------KQEAKTEATQENKA-----KESNKENKNNKAKEGK 44
Query: 415 KAKAEQRAREFEQRARE 431
+A+ + + ++ A+E
Sbjct: 45 IKEAKTKESKVKETAKE 61
Score = 24.6 bits (52), Expect = 5.3
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 295 KLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEER 354
K A EE+ R K+ T+ E + +E + ++ + EG+ K + + KE
Sbjct: 2 KKKANEEKAPKR--AKQEAKTEATQENKAKESNKENKNNKAKEGKIKEAKTKESKVKETA 59
Query: 355 VKPKENEREIKQEAIKE 371
+P ++ EA++E
Sbjct: 60 KEPIPVKKLSFNEALEE 76
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 29.3 bits (64), Expect = 0.22
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 247 IKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLR 306
IKK +E++ ++E +A+K KK T + LE+ ++K + K + L
Sbjct: 30 IKKEQEEVAAKE-------DALKARKKLLNNTHDF--LEDLVFRKQKIKELVDYRAKVLL 80
Query: 307 DERKKAKATKKAMEFEEREK 326
D K K K+A+E E R K
Sbjct: 81 DLENKYKKEKEALEKETRGK 100
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 28.5 bits (62), Expect = 0.37
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 377 NATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERD 436
+A GEK N Q NK E+ + + E++ K KA+++ ++ A + +
Sbjct: 116 DAKAMGEKAKVAVRNTRQDANNKVKKLEKDKEISEDESK-KAQEQIQKITDEAIKKIDES 174
Query: 437 EKELEE 442
K E+
Sbjct: 175 VKNKED 180
>ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 198
Score = 28.5 bits (62), Expect = 0.37
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 357 PKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQ-KEENKPNSKEEKRRLKEEKKK 415
P + +E+ +E K P + + ++N KEN + E+NK N+K ++ K
Sbjct: 125 PTQTPKELPKEPAKTPFVESPKQNEKNEKNDAKENGIKGVEKNKENAKTPPTTHQKPKTH 184
Query: 416 AKAEQRAREFEQRAREHQERDEK 438
A A +Q++DEK
Sbjct: 185 ATT---------NAHTNQKKDEK 198
>ref|NP_223219.1| putative [Helicobacter pylori J99]
Length = 321
Score = 28.5 bits (62), Expect = 0.37
Identities = 42/191 (21%), Positives = 72/191 (36%), Gaps = 47/191 (24%)
Query: 263 IKQEAIKEPKKANQ-GTQNAPTLEEKNYQKAERKLDAKE-----ERRYLRDERKKAKATK 316
+K+ E KA + ++N ++ EK Y+ R + A+ E Y D K
Sbjct: 43 LKEVGAAEICKATKIASKNIHSILEKRYESLSR-VHARGFIQILEHEYKIDLSAWVKEFD 101
Query: 317 KAMEFEER--EKEHDERDEQETEGRRKALEMDKG--------DKKEERVKP--------- 357
K F+E E++ E +ET + +E+D KK + KP
Sbjct: 102 KVCVFKEGVGEEQKQETSPEETAKKPLKVELDYSINQANTSLSKKSSKWKPFVIVLGVVV 161
Query: 358 -----------------KENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKP 400
+E ER IK + + N T++ + + PK +E++K
Sbjct: 162 IILVVVIIQNSSSLKEEREQERAIKPDTKNNSFNETNPTEEKKLEPTPK----LEEKHKE 217
Query: 401 NSKEEKRRLKE 411
K+ K +KE
Sbjct: 218 QDKQGKEAIKE 228
Score = 24.6 bits (52), Expect = 5.3
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 43/137 (31%)
Query: 255 DSREIKREIKQE-AIKEPKKANQGTQNAPT----------LEEKNYQKAERKLDAKEERR 303
+S +K E +QE AIK K N + PT LEEK+ ++ ++ +A +E
Sbjct: 171 NSSSLKEEREQERAIKPDTKNNSFNETNPTEEKKLEPTPKLEEKHKEQDKQGKEAIKENP 230
Query: 304 ---YL------------RDERKKA--KATKKAMEFEER---------------EKEHDER 331
Y+ DE+K + K KK+ E + + H E+
Sbjct: 231 NTIYIIPKRDIWVEVIDLDEKKNSFQKVFKKSYPLEAKNHRLLLRFGHGHLILKNNHQEQ 290
Query: 332 DEQETEGRRKALEMDKG 348
D +++ RR E +KG
Sbjct: 291 DYNDSKTRRFLYEPNKG 307
Score = 24.6 bits (52), Expect = 5.3
Identities = 24/93 (25%), Positives = 43/93 (45%), Gaps = 8/93 (8%)
Query: 305 LRDERKKAKATK---KAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKE-- 359
L++ER++ +A K K F E +++ E + K E DK K+ + P
Sbjct: 175 LKEEREQERAIKPDTKNNSFNETNPTEEKKLEPTPKLEEKHKEQDKQGKEAIKENPNTIY 234
Query: 360 --NEREIKQEAIKEPSDGNNATQQGEKQNAPKE 390
+R+I E I + + N+ Q+ K++ P E
Sbjct: 235 IIPKRDIWVEVI-DLDEKKNSFQKVFKKSYPLE 266
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 28.1 bits (61), Expect = 0.48
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 383 EKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEE 442
E ++AP+E KE P K +L E E+ +E +A + +E D KE++E
Sbjct: 482 ENKSAPEETKEVKEFKFPPLKP---KLTTETTAEMQEKETKEAVGKALQTKENDTKEVQE 538
Score = 26.2 bits (56), Expect = 1.8
Identities = 47/197 (23%), Positives = 77/197 (38%), Gaps = 39/197 (19%)
Query: 183 ESFEILEKRELDTSGVTKTSTPFFSRVEGIDAGTLGKLFSGSQSKNY-----------FA 231
E E LEKRE + TP S + I ++ + +NY F
Sbjct: 374 EGREKLEKRER----IETPQTPMLSAKDRIFHNLFKQVQTLVYERNYELGAVFEKNIRFI 429
Query: 232 YYDALVKKEKRKEVRIKKREEKIDSR-EIKREI------KQEAIKEPKKANQGTQNAP-- 282
+D+ K + + K +E + R +I + I K E IK K + ++AP
Sbjct: 430 DFDSQTKTLTWESLATDKDKELLRERFKIVKSIVDGVFGKGENIKIALKHHLENKSAPEE 489
Query: 283 TLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKA 342
T E K ++ K E E++ +A KA++ KE+D ++ QE E
Sbjct: 490 TKEVKEFKFPPLKPKLTTETTAEMQEKETKEAVGKALQ----TKENDTKEVQENE----- 540
Query: 343 LEMDKGDKKEERVKPKE 359
K+ + +PKE
Sbjct: 541 ------TKETKEAQPKE 551
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 28.1 bits (61), Expect = 0.48
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 389 KENNAQKEENKP-NSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKAL 447
KEN EN P ++++ + LKEEK++ K ++ + +K++++ KAL
Sbjct: 171 KENQENMSENAPKDAQKNNKPLKEEKEETKEKEEETIIIGDNTNAMKIIKKDIQKGYKAL 230
Query: 448 EAGKK 452
++ ++
Sbjct: 231 KSSQR 235
Score = 26.6 bits (57), Expect = 1.4
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
Query: 380 QQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKK 415
Q+ +NAPK+ AQK NKP KEEK KE++++
Sbjct: 174 QENMSENAPKD--AQK-NNKP-LKEEKEETKEKEEE 205
>ref|NP_224073.1| putative motility protein [Helicobacter pylori J99]
Length = 195
Score = 27.7 bits (60), Expect = 0.63
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 238 KKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLD 297
KK + I+K E +I+ + A +E ++ + N E+K +A+ + +
Sbjct: 27 KKLSSNDWHIQKVEMNHQVYDIETMLADSAFREHEEEQDSSLNTALPEDKTAIEAKEQ-E 85
Query: 298 AKEERRYLRDERKKAKATKKAM-EFEEREKEH 328
KE+R++ + KK K +M EF +KE+
Sbjct: 86 QKEKRKHWYELFKKKPKPKSSMGEFVFDQKEN 117
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 27.7 bits (60), Expect = 0.63
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 326 KEHDERDEQETEGRRKALEMDKGDKKEERVKPKENER---EIKQEAIKEPSDGNNATQQG 382
K E+ + E ++ +L+++K K E KE E+ ++ A+K + +
Sbjct: 494 KSFQEKRDMEKGFKQSSLKLNKNLKDLEPFGEKEIEKRASDLVDWALKIWTYPILEAETL 553
Query: 383 EKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQE---RDEKE 439
E+ KE +KE K+EK K +K+K + + +F +RE + ++ K
Sbjct: 554 EEYKPKKEKKEKKE------KKEKEEYKLKKEKKVYDLSSYKFSPHSRELFDILRKEIKT 607
Query: 440 LEER 443
L+ER
Sbjct: 608 LDER 611
Score = 25.0 bits (53), Expect = 4.1
Identities = 10/53 (18%), Positives = 30/53 (55%)
Query: 396 EENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALE 448
EE KP ++++++ K+EK++ K ++ + ++ + + + + RK ++
Sbjct: 554 EEYKPKKEKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSPHSRELFDILRKEIK 606
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 27.7 bits (60), Expect = 0.63
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 219 KLFSGS--QSKNYFAYYDALVKKEKRKEVRIKKREEKIDSREIKREIKQEAI 268
K FS S +S+ Y +V+K+ E +++K ++K R I +I QE++
Sbjct: 198 KAFSKSLEKSRPLLTYILNMVRKDLLIETKLRKYDKKESFRHIDNQISQESV 249
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 27.3 bits (59), Expect = 0.82
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 275 NQGTQNAPTLE--EKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERD 332
N+ +P L+ E + + E+ + ERR L D+++ K ++ + FE+ + E +
Sbjct: 148 NKNKAFSPLLDALETKFTRLEK---LERERRSLEDKKRFQKDLEERLNFEKMKLERLDLK 204
Query: 333 EQETEGRRKALEMDKGDKKEERVKPK 358
E E E + LE K +E++ K
Sbjct: 205 EDEYE---RLLEQKKLLSSKEKLNDK 227
Score = 24.6 bits (52), Expect = 5.3
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 403 KEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELE---ERRKALEAGKK 452
+ E+R L+++K+ K + FE+ E + E E E E++K L + +K
Sbjct: 171 ERERRSLEDKKRFQKDLEERLNFEKMKLERLDLKEDEYERLLEQKKLLSSKEK 223
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 27.3 bits (59), Expect = 0.82
Identities = 33/151 (21%), Positives = 61/151 (39%), Gaps = 9/151 (5%)
Query: 264 KQEAIKEPKKANQGTQNAPTLEEKNYQKAER--KLDAKE---ERRYLR---DERKKAKAT 315
+++ +K+ + N+ T L AE+ KL++++ E+ +L+ E K+ +A
Sbjct: 286 QEDLLKDTENLNETTPKPTHLSPLELANAEKLAKLESEQLQSEQEFLKAKEQELKRKEAL 345
Query: 316 KKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDG 375
KK +E E H E + G ++ + + RV+ E E AI + D
Sbjct: 346 KKKLEHERGNAGHIESQTKIEVGEDIPTQV-QAQIPKSRVRLNEREIYDLDYAIVKAKDL 404
Query: 376 NNATQQGEKQNAPKENNAQKEENKPNSKEEK 406
+ G Q N Q + N +K
Sbjct: 405 KPSFTTGGTQKRTDMNEEQIKSIAENFDPKK 435
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 27.3 bits (59), Expect = 0.82
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 272 KKANQGTQNAPTLEEKNYQKAERK-------------LDAKEERRYLRDERKK-AKATKK 317
KK Q Q A E +Y++A+++ A EE LRD+ K AKA KK
Sbjct: 557 KKTTQSMQKA--FEITSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIKIAKALKK 614
Query: 318 -AMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERV 355
M EREK E D++ E R K L+ ++ + + +
Sbjct: 615 DKMPKSEREKIIKELDKKMRE-RAKNLDFEEAMRLRDEI 652
Score = 24.6 bits (52), Expect = 5.3
Identities = 18/79 (22%), Positives = 33/79 (40%), Gaps = 9/79 (11%)
Query: 261 REIKQEAIKE-----PKKANQGTQNAPTLEEKNYQKAER----KLDAKEERRYLRDERKK 311
R KQE + PK + + L + + A+ K+ E + +++ KK
Sbjct: 573 RRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIKIAKALKKDKMPKSEREKIIKELDKK 632
Query: 312 AKATKKAMEFEEREKEHDE 330
+ K ++FEE + DE
Sbjct: 633 MRERAKNLDFEEAMRLRDE 651
Score = 24.3 bits (51), Expect = 6.9
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 393 AQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQE 434
A K++ P S+ EK +KE KK + + +FE+ R E
Sbjct: 611 ALKKDKMPKSEREKI-IKELDKKMRERAKNLDFEEAMRLRDE 651
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 27.3 bits (59), Expect = 0.82
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 383 EKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKA-EQRAREFEQRAREHQERDEKELE 441
E++ + N +E+ + +E +++KE K+KAK Q+ FE + + ++K+L+
Sbjct: 88 EEEKHKQALNLINKEDTEDKEELAKKIKEIKEKAKVLRQKFMAFEMKEHSKEFPNKKQLQ 147
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 26.9 bits (58), Expect = 1.1
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 346 DKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEE 405
+K K+ E ++ NE+E + E G K N E+ +KE E+
Sbjct: 647 EKETKELEELENALNEKEALLDEFIEEHSNEEGLFDGLKIN---ESVLKKELKNATDLED 703
Query: 406 KRRLKEEKKKAKAEQRAREFEQRAREHQE 434
K+ LK + +A+ +A + + +A E E
Sbjct: 704 KQILKTALEWLEAKNKALKMKNKAYEELE 732
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 26.9 bits (58), Expect = 1.1
Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 329 DERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGE----- 383
D + Q T+ + ++LE K + N+ + + ++ NN +
Sbjct: 155 DNANNQITKNKTQSLEAITQAKNNANNEISNNQTQAITNITEAKTNANNEISNNQTQAIT 214
Query: 384 -----KQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAK 417
K++A + NA K+E N +EK + E +AK
Sbjct: 215 NINEAKESATTQINANKQEAINNITQEKTQATSEITEAK 253
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 26.9 bits (58), Expect = 1.1
Identities = 21/76 (27%), Positives = 29/76 (37%), Gaps = 14/76 (18%)
Query: 330 ERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPK 389
E Q+ + KALE D +IKQ A A Q +KQ
Sbjct: 493 ENTNQQIQQDEKALEKDLA--------------QIKQLANSTTGFNEQAFTQAQKQEQQD 538
Query: 390 ENNAQKEENKPNSKEE 405
E Q +EN N+++E
Sbjct: 539 EQALQNDENAFNTEQE 554
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 26.9 bits (58), Expect = 1.1
Identities = 44/163 (26%), Positives = 69/163 (41%), Gaps = 27/163 (16%)
Query: 219 KLFSGSQSKNYFAYYDALVKKEKRKEVRIKKREEKI-----DSREIKREI----KQEAIK 269
KLF Q K YF Y + ++ + EV R+E + DS K I +K
Sbjct: 202 KLFE-QQKKMYFNYANDVICRPN-DEVCSPLRDEMVAMPTNDSVTQKPNIIAPYSLYRLK 259
Query: 270 EPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHD 329
E AN+ Q +P + + ++ KL E A + A E E +K
Sbjct: 260 ETNNANEA-QPSPYATQTAPENSKEKLI----------EELIANSQLIANEEEREKKLLA 308
Query: 330 ERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEP 372
E+++QETE + L+ E + K K E E+K++ K+P
Sbjct: 309 EKEKQETELAKYKLK-----DLENQKKLKALEAELKKKNTKKP 346
Score = 24.3 bits (51), Expect = 6.9
Identities = 17/46 (36%), Positives = 22/46 (46%), Gaps = 5/46 (10%)
Query: 376 NNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQR 421
+NA E A K A KE +KE K+ K KK+AK Q+
Sbjct: 17 SNALYAKEISEADKVIKATKE-----TKETKKEAKRLKKEAKQRQQ 57
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 26.6 bits (57), Expect = 1.4
Identities = 61/277 (22%), Positives = 105/277 (37%), Gaps = 65/277 (23%)
Query: 181 SCESFEILEKREL-DTSGVTKTSTPFFSRVEGIDAGTLGKLFSGSQSKNYFAYYDALV-- 237
+C FE+ + EL D V + P + ++ D G+ +S Y AY L
Sbjct: 515 ACRYFELFLETELKDKVAVITSYEPNIADLK--DCGSN----ESEESYKYRAYCKMLQNF 568
Query: 238 ---KKEKRKEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAER 294
K EK+ +IK+ EE++ R I + + + K G +AP+L K +
Sbjct: 569 FNEKDEKKALNKIKEFEEEVKKRFINEPARMKLLIVVDKLLTGF-DAPSLTYLYIDKRMQ 627
Query: 295 ------------KLDAKE-------ERRYLRDERKKAKATKKAMEFEEREKEHDERDEQE 335
+LD ++ + L D ++A + FE E+E +
Sbjct: 628 DHGLFQAVCRVNRLDGEDKDFGCIIDYSDLFDSLQEAHSDYTNGAFENYEREDIQ----- 682
Query: 336 TEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQK 395
L DK K +++++ ++ + E++KEP D + N E NAQK
Sbjct: 683 ------GLISDKSQKIKKKLEETRDQLKSLCESVKEPKDEEDYIAYFCGDNL--EKNAQK 734
Query: 396 E--------------------ENKPNSKEEKRRLKEE 412
E SKEE +++K+E
Sbjct: 735 RRLFYQLVGAFLRMFVELNNLEKPIYSKEETQQIKQE 771
Score = 26.6 bits (57), Expect = 1.4
Identities = 36/140 (25%), Positives = 61/140 (42%), Gaps = 14/140 (10%)
Query: 241 KRKEVRIKKREEKIDSRE-IKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAK 299
K+K V ++K D E I ++I + K P+ +N G NA + E Y +
Sbjct: 465 KKKWVNLQKVFSTKDRLEHIVQDIVLDMAKLPRLSN-GKGNAMLVAESVYNAC------R 517
Query: 300 EERRYLRDERKKAKATKKAMEFEERE-KEHDERDEQETEGRRKALEM-----DKGDKKEE 353
+L E K A + E + K+ + +E+ R +M ++ D+K+
Sbjct: 518 YFELFLETELKDKVAVITSYEPNIADLKDCGSNESEESYKYRAYCKMLQNFFNEKDEKKA 577
Query: 354 RVKPKENEREIKQEAIKEPS 373
K KE E E+K+ I EP+
Sbjct: 578 LNKIKEFEEEVKKRFINEPA 597
>ref|NP_223137.1| putative [Helicobacter pylori J99]
Length = 115
Score = 26.6 bits (57), Expect = 1.4
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 317 KAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQE 367
+ + F++ EK + + + RK + DK +++ R+ + ERE +Q+
Sbjct: 54 RPVSFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQK 104
Score = 25.0 bits (53), Expect = 4.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 389 KENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQ 427
K+N+ +K + KEE+ RL + KK+ ++ Q+ EQ
Sbjct: 72 KKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQ 110
>ref|NP_224062.1| putative [Helicobacter pylori J99]
Length = 258
Score = 26.2 bits (56), Expect = 1.8
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 358 KENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKR---RLKEEKK 414
KE+ +E+K+E++KE N +Q P+E + K KEE +L E K+
Sbjct: 57 KESVKEVKEESVKEIHQ-NAEEKQSLGIKTPQEEIITPKPPKKTPKEESHNGDKLHEIKQ 115
Query: 415 KAK 417
+ K
Sbjct: 116 ELK 118
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 26.2 bits (56), Expect = 1.8
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 231 AYYDALVKKEKRKEVRIKKREEKIDSREIKREIKQEA-IKEPKKANQGTQN 280
A+Y A+++KEK KE+ K++ + S E+ + K A +K+ N +N
Sbjct: 627 AHYQAMLEKEKAKEL-AKQQANTLHSNELDDDPKAHAGLKQNGNTNSKGRN 676
Score = 24.3 bits (51), Expect = 6.9
Identities = 32/144 (22%), Positives = 62/144 (42%), Gaps = 18/144 (12%)
Query: 265 QEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAM----E 320
++ +K+ ++ + + K+Y+ E L KE++ +L+ ++ +K +K + E
Sbjct: 511 EQDLKQKEEEFERAKEHYVKSSKHYR--ETSLSPKEKQGFLKQIKQFSKISKDILYTCNE 568
Query: 321 FEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQ 380
+ D E K LE K K E++ EI Q KEP++ +
Sbjct: 569 IIGANRFLTHYDNLNLE---KVLEHAKDTKLEQK--------EI-QAITKEPNNDEPWIE 616
Query: 381 QGEKQNAPKENNAQKEENKPNSKE 404
G+K+ A + + Q K +KE
Sbjct: 617 FGKKEQARAKAHYQAMLEKEKAKE 640
Score = 24.3 bits (51), Expect = 6.9
Identities = 15/60 (25%), Positives = 23/60 (38%)
Query: 348 GDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKR 407
G K++ R K K++A + N E + PK + K+ NSK R
Sbjct: 618 GKKEQARAKAHYQAMLEKEKAKELAKQQANTLHSNELDDDPKAHAGLKQNGNTNSKGRNR 677
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 26.2 bits (56), Expect = 1.8
Identities = 12/46 (26%), Positives = 29/46 (62%)
Query: 399 KPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERR 444
KP+ K ++L ++K + +EQ+A E + ++ QE +++L +++
Sbjct: 268 KPDQKPLDQKLSDQKPQKLSEQKALEQKISEQKPQEPLDQKLSDQK 313
Score = 24.3 bits (51), Expect = 6.9
Identities = 31/173 (17%), Positives = 73/173 (41%), Gaps = 6/173 (3%)
Query: 275 NQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQ 334
N+ + T+ K+Y + ++ + + + E+ K E+ + +
Sbjct: 174 NENNELVKTIPLKDYNGQKGYINFEWDGTNEKGEKVPKGNYKIKAEYNLDSQSKQYLQTR 233
Query: 335 ETEGRRKALEMDKGD---KKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKEN 391
G +++ DKG + E + P ++ E + K P D + Q+ +K + K
Sbjct: 234 IGRGEVESVIFDKGKPMLRMGEMILPIDSAIEFYKPDQK-PLDQKLSDQKPQKLSEQKAL 292
Query: 392 NAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRARE-HQERDEKELEER 443
+ E KP +++ L ++K + EQ+ E + ++ ++ +K LE++
Sbjct: 293 EQKISEQKPQEPLDQK-LSDQKPQKPLEQKISEQKPLDQKLSDQKPQKPLEQK 344
>ref|NP_222877.1| putative [Helicobacter pylori J99]
Length = 243
Score = 26.2 bits (56), Expect = 1.8
Identities = 16/79 (20%), Positives = 33/79 (41%)
Query: 353 ERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRLKEE 412
E ++ E + E K+ +EP + + EK KE+ + + P+ +E
Sbjct: 16 ENLEALEAKEEAKEPTKEEPKESKENSNYSEKMTVKKEDAEKYGKISPHEWPPPPPTEEH 75
Query: 413 KKKAKAEQRAREFEQRARE 431
K + + R+ E +A +
Sbjct: 76 KVVHQLDDVTRDSEVKATQ 94
>ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helicobacter pylori J99]
Length = 203
Score = 26.2 bits (56), Expect = 1.8
Identities = 36/134 (26%), Positives = 52/134 (37%), Gaps = 36/134 (26%)
Query: 249 KREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDE 308
+ E+KI +E K++ KQ IKE K + Q QN + NY+ K R ++
Sbjct: 69 QNEKKI--KEAKKKQKQIEIKEIKLSTQIAQN-----DINYK-------VKHAREFIESN 114
Query: 309 RK-KAKATKKAMEFEEREKEHD--------------ERDEQETEGR-------RKALEMD 346
+ K K K E + + D E +TEGR KA E
Sbjct: 115 KHVKFKVVLKGRESQNSKAGLDVLFRVQTMMQDLANPEKEPKTEGRFVSWMFVPKAKEAP 174
Query: 347 KGDKKEERVKPKEN 360
K +KK + P N
Sbjct: 175 KNEKKTKENNPPFN 188
Score = 25.8 bits (55), Expect = 2.4
Identities = 17/75 (22%), Positives = 33/75 (43%), Gaps = 1/75 (1%)
Query: 220 LFSGSQSKNYFAYYDALVKKEKR-KEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGT 278
+ G +S+N A D L + + +++ ++E K + R + +A + PK +
Sbjct: 122 VLKGRESQNSKAGLDVLFRVQTMMQDLANPEKEPKTEGRFVSWMFVPKAKEAPKNEKKTK 181
Query: 279 QNAPTLEEKNYQKAE 293
+N P N K E
Sbjct: 182 ENNPPFNRINLMKGE 196
>ref|NP_224131.1| putative [Helicobacter pylori J99]
Length = 115
Score = 25.8 bits (55), Expect = 2.4
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 347 KGDKKEERVKPKENEREIKQEAIKEPS-DGNNATQQGEKQNAPKE-NNAQKEENKPNSKE 404
K + K+ + N + + I +P+ D + E + KE N+ ENK +
Sbjct: 22 KDEPKKSSQSHQNNTKTTQNNQINQPNKDIKKIEHEEEDEKVTKEVNDLINNENKIDE-- 79
Query: 405 EKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEER 443
+ E+ +++R QRA HQ+ L +
Sbjct: 80 ----INNEENADPSQKRTNNVLQRATNHQDNLSSPLNRK 114
>ref|NP_223199.1| cag island protein [Helicobacter pylori J99]
Length = 280
Score = 25.8 bits (55), Expect = 2.4
Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 360 NEREIKQEAIKEPSDGNNATQ------QGEKQNAPKENNAQKEENKPNSKEEKRRLKEEK 413
N +++ E +E + Q Q ++Q N Q+E + S ++++
Sbjct: 177 NNKQVINEVAREKAQLEKINQYYKTLLQDKEQEYTTRKNNQREILETLSNRAGYQMRQNV 236
Query: 414 ------KKAKAEQRAREFEQRAREHQERDEKELEERRKALEAGK 451
K +A+E E R + +ER+ + L + ++L +GK
Sbjct: 237 ISSEIFKNGNLNMQAKEEEVREKLQEERENEYLRNQIRSLLSGK 280
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 25.8 bits (55), Expect = 2.4
Identities = 33/151 (21%), Positives = 58/151 (37%), Gaps = 9/151 (5%)
Query: 264 KQEAIKEPKKANQGTQNAPT---LEEKNYQK-----AERKLDAKEERRYLRDERKKAKAT 315
+++ +K + N+ TQ LE+ N +K +E K+ +E + E K+ A
Sbjct: 206 QEDLLKNTELNNETTQEVKNLSLLEQANAEKLAKLESEAKVSEQEFLKAKEQEAKRKVAL 265
Query: 316 KKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAIKEPSDG 375
KK +E E + E + G ++ + + RV+ E E AI + D
Sbjct: 266 KKKLEHERGNAGNIESQTKIEVGEDIPTQI-QAQIPKSRVRLNEREIYDLDYAIVKAKDL 324
Query: 376 NNATQQGEKQNAPKENNAQKEENKPNSKEEK 406
+ G Q N Q + N +K
Sbjct: 325 KPSFTTGGTQKRTDMNEEQIKSIAENFDPKK 355
>ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99]
Length = 688
Score = 25.4 bits (54), Expect = 3.1
Identities = 41/177 (23%), Positives = 70/177 (39%), Gaps = 32/177 (18%)
Query: 116 FLIAPNDELYEQ------IRATNTDINFISSDLLVTFLNGFDPKIA---------NLRKA 160
F+I P+ L Q + T +N I L LN + + +L++
Sbjct: 157 FIINPSASLLNQSSLDLFVSGTKESLNMIEMRSLGQKLNALEEPLMLEALELAQKSLKET 216
Query: 161 CNVYSVGVIYIVTTNTLNILSCESFEILEKRELDTSGVTKTSTPFFSRVEGIDAGTLGKL 220
C +Y + N L E +L +R LD + F ++GI++ L
Sbjct: 217 CALYEEA--FTPYQNELLFKEGEGI-VLNERLLDLL----KNQYFDEIIKGIESSAL--- 266
Query: 221 FSGSQSKNYFAYYDALVKKEKRKEVRIKKRE---EKIDSREIKREIKQEAIKEPKKA 274
S+ +N F + E E +++ E EK+ EI+R I Q+ I+ K+A
Sbjct: 267 ---SERENVFKEVAKKIS-EAHSEFSLEEIELSLEKVKKTEIRRMIIQDKIRPDKRA 319
>ref|NP_223375.1| putative [Helicobacter pylori J99]
Length = 140
Score = 25.4 bits (54), Expect = 3.1
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 399 KPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALEA 449
K S E+ ++ + + + ++ E+ ++ +E KELEE+ K L A
Sbjct: 55 KALSAEDAKKFRANFSRIARKNLSKMSEEDFKKMREEVRKELEEKTKGLSA 105
>ref|NP_223090.1| putative [Helicobacter pylori J99]
Length = 440
Score = 25.4 bits (54), Expect = 3.1
Identities = 26/119 (21%), Positives = 49/119 (40%), Gaps = 1/119 (0%)
Query: 233 YDALVKKEKRKEVRIKKREEK-IDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQK 291
++AL K + VR+KK++ K E K+ A+ N+ + ++K Y
Sbjct: 167 FEALDKNLSQAFVRVKKKDFKAFRLLEFKQRNVFIALVPWSYENKDFKAFIVAKDKAYNS 226
Query: 292 AERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDK 350
L K + LR+ A K + +E+ + H E+ E + +++K K
Sbjct: 227 NTTPLLFKRKTHRLRERDINLSALKDKIAKQEKFQNHTEQTLLEMFSNARLKDLEKIQK 285
>ref|NP_223915.1| putative [Helicobacter pylori J99]
Length = 123
Score = 25.0 bits (53), Expect = 4.1
Identities = 18/67 (26%), Positives = 26/67 (37%)
Query: 386 NAPKENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRK 445
N NN +K K L E +KA E + RE + +K+L+ER
Sbjct: 2 NTNNHNNEKKNTITRRMKIAHNSLPETDRKAHMEPKWRELADIRSKMFAESKKQLKERGI 61
Query: 446 ALEAGKK 452
L+ K
Sbjct: 62 QLKEKSK 68
Score = 24.6 bits (52), Expect = 5.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 397 ENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDE 437
E+K KE +LKE+ K + E RE E E Q + E
Sbjct: 51 ESKKQLKERGIQLKEKSKAQQQESFEREKELMEEEFQVQRE 91
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 25.0 bits (53), Expect = 4.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 390 ENNAQKEENKPNSKEEKRRLKEEKK---KAKAEQRAREFEQRAR 430
EN A KE++K E +RL+E K KA + ++F+ R +
Sbjct: 382 ENPANKEDSKSAILERLKRLREYSKDHLKAFQRLQVQDFDGRIK 425
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 25.0 bits (53), Expect = 4.1
Identities = 23/122 (18%), Positives = 53/122 (42%), Gaps = 7/122 (5%)
Query: 244 EVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAKEERR 303
E + +++EE+ +K+E + +K PKK + ++K++ A KE
Sbjct: 10 ENKFEEQEEQAQDTPLKQEPSTKEVKIPKKRGRKKSLLDEDKKKSFNIAFSPCVIKELNE 69
Query: 304 YLRD--ERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENE 361
+L + K+ ++T F E + + T+ ++ ++++ KE+ + N
Sbjct: 70 FLLEFGSFKETRST-----FIEEALIRHLKHRKNTQEQKLLKQLERLQNKEKGIMKTMNL 124
Query: 362 RE 363
E
Sbjct: 125 NE 126
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 25.0 bits (53), Expect = 4.1
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 243 KEVRIKKREEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAERKLDAKEER 302
K I+K+ +I S R + E +++NQ + L+ + K+E++ K+E
Sbjct: 73 KIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEVLKKEM 132
Query: 303 RYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPK 358
L K A+E E E++ ++ +ET+ + K ++ E+ +PK
Sbjct: 133 LELE---------KLALELENL-VENEVKNIKETQ----QIIFKKKEELVEKTEPK 174
>ref|NP_223318.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 906
Score = 25.0 bits (53), Expect = 4.1
Identities = 16/42 (38%), Positives = 21/42 (49%), Gaps = 2/42 (4%)
Query: 341 KALEMDKGDKKEERVKPKENEREI-KQEAIKEPSDGNNATQQ 381
+ALE D G K + PKE +E K EA E S N ++
Sbjct: 19 EALEND-GSKPNDLASPKETPKEAQKNEAQNETSQSNQTPKE 59
>ref|NP_223038.1| putative [Helicobacter pylori J99]
Length = 112
Score = 25.0 bits (53), Expect = 4.1
Identities = 20/93 (21%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 350 KKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRL 409
+K +R KE ++I+++A+K ++ K+N + ++ +EE K + E++RL
Sbjct: 27 QKTKRALFKEKSQKIREQAVKI------VEKRLIKENM-QLSDFNEEELKIMFEAEEKRL 79
Query: 410 KEEKKKAKAEQRAREFEQRAREHQERDEKELEE 442
E+ + +++ + + +E E+ + E E+
Sbjct: 80 LEQIHAKELKEKQEKTTKHFKEVWEKGDNEQEK 112
>ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 326
Score = 24.6 bits (52), Expect = 5.3
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 224 SQSKNYFAYYDALVKKEKRKEVRIKK---REEKIDSREIKREIKQEAI 268
+Q++ F+ + V E KE I K E K + +++KR IK++A+
Sbjct: 168 NQAQQIFSLLEQSVFFETNKERLILKTLNEENKQNDKKLKRSIKEKAL 215
Score = 24.3 bits (51), Expect = 6.9
Identities = 10/17 (58%), Positives = 13/17 (75%)
Query: 396 EENKPNSKEEKRRLKEE 412
EENK N K+ KR +KE+
Sbjct: 197 EENKQNDKKLKRSIKEK 213
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 24.6 bits (52), Expect = 5.3
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 342 ALEMDKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPN 401
AL + G KKE + + + P+D NNA +G+ +N + K+ K N
Sbjct: 78 ALSLLLGHKKENKQTSLQTNTATTNN--ETPNDTNNAEAEGQIENLDLPDLIGKDSLKRN 135
Query: 402 SKEE 405
+ +
Sbjct: 136 DESQ 139
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 24.6 bits (52), Expect = 5.3
Identities = 18/75 (24%), Positives = 31/75 (41%)
Query: 284 LEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKAL 343
+ EK+ K K Y R RKKAKA+ + ++ ++E + G+
Sbjct: 561 VNEKHDAKQRVKFINFSNDGYARANRKKAKASHNLKDTHNAKERYNEVVDLVHIGQSCLK 620
Query: 344 EMDKGDKKEERVKPK 358
+ + D E + PK
Sbjct: 621 FLSEDDYYENTIDPK 635
>ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 465
Score = 24.6 bits (52), Expect = 5.3
Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 3/39 (7%)
Query: 390 ENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQR 428
E+ Q+ ENK EE++R KE+K KA+ E Q+
Sbjct: 413 ESEKQEIENKI---EERKRAKEQKDFLKADSIREELLQQ 448
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 24.6 bits (52), Expect = 5.3
Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 234 DALVKKEKRKEVRIKKR----EEKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNY 289
+ L+KK ++ ++ R E I S+E+++ + + KK+ + +N ++EK
Sbjct: 31 ETLLKKTHEEKNQLNSRLSSLGEAIRSKELQKVEIERQMVALKKSLEKNRNESLVQEKVL 90
Query: 290 QKAERKLDAKEERRYLRDER 309
+ LD +++R +R
Sbjct: 91 TNYRKSLDHLQKQRSFLQKR 110
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 24.6 bits (52), Expect = 5.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 391 NNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRK 445
NN KE K+ K +L E+ E+R +E E++ R ++ ++LEER K
Sbjct: 160 NNECKEIFGNELKQRKTKLIED-----IERRFKECEEQFRGSVGKNIEQLEERVK 209
>ref|NP_224134.1| putative [Helicobacter pylori J99]
Length = 479
Score = 24.3 bits (51), Expect = 6.9
Identities = 29/115 (25%), Positives = 45/115 (38%), Gaps = 18/115 (15%)
Query: 225 QSKNYFAYYDALVKKEKRKEVRIKK----------REEKIDSREIKREIKQEAIKE-PKK 273
++KN FA A EK K R +K E + E + EI + +K ++
Sbjct: 309 EAKNNFAILQARSSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYER 368
Query: 274 ANQGTQNAPTLEEKNYQKAERKLDAKEERRYLRDERKKAKATKKAMEFEEREKEH 328
Q Q PT Y+ +E + + R+E +K MEF E + H
Sbjct: 369 PKQDDQVEPTF----YETSELAYSSTRKSEITRNE---LNLNEKFMEFVEVYEGH 416
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 24.3 bits (51), Expect = 6.9
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 346 DKGDKKEERVKPKENEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEE 405
D E EN ++ EA + ++ ++NA K + E + K+E
Sbjct: 3 DNNQNNENHENSSENSKD-HHEARAGAFERFTNRKKRFRENAQKNAESSNHETLSHHKKE 61
Query: 406 KRRLKEEKKKAKAEQRAREFEQRAREHQERDEKE 439
R K+ K + +++ A+E + ++ E
Sbjct: 62 HRPNKKPNNHHKPKHASQKTRNYAKEELDNNKVE 95
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 24.3 bits (51), Expect = 6.9
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 248 KKREEKIDSREIKREIKQEAIKE-PKKAN-------QGTQNAPTLEEKNYQKAERKLDAK 299
K K + IK + QE+ +E P+K N + TQNAP+ A++ + K
Sbjct: 300 KTENHKTPNHPIKEDDLQESPQENPQKENIEENIEEKETQNAPSFSPLTLTSAKKPVMVK 359
Query: 300 E 300
E
Sbjct: 360 E 360
>ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter pylori J99]
Length = 533
Score = 23.9 bits (50), Expect = 9.0
Identities = 12/45 (26%), Positives = 27/45 (59%)
Query: 300 EERRYLRDERKKAKATKKAMEFEEREKEHDERDEQETEGRRKALE 344
+E+ + + KK+K T A+E +++EK+ ++ +E +R L+
Sbjct: 458 KEKSLMLESLKKSKNTAIALELKKKEKKSLKKVYKEEVIKRSILK 502
>ref|NP_223661.1| putative [Helicobacter pylori J99]
Length = 255
Score = 23.9 bits (50), Expect = 9.0
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 310 KKAKATKKAMEFEEREKEHDERDEQETEGRRKALEMDKGDKKEERVKPKENEREIKQEAI 369
KK K + + E++ + + E + R D G K+ KEN + +E
Sbjct: 89 KKEKEILQPLNANEKQVLNTALENNEIDARTFK-PWDLGSKEAS----KENA-SMSEELT 142
Query: 370 KEPSDGNNATQQGEKQNAPKENNAQKEENKPNSKEEKRRL 409
+ S ++ + QN+ +NN ++ K N+ ++ L
Sbjct: 143 QNNSKLSHFNENSIAQNSVGQNNVKEPNTKSNNSKQNHSL 182
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 23.9 bits (50), Expect = 9.0
Identities = 15/82 (18%), Positives = 37/82 (44%), Gaps = 1/82 (1%)
Query: 360 NEREIKQEAIKEPSDGNNATQQGEKQNAPKENNAQKE-ENKPNSKEEKRRLKEEKKKAKA 418
+++ + +E+ +E + +G+ +A + A + P S+ E EEK +
Sbjct: 34 DQQAVSEESHRERDRIHEHVSRGDGVSARADARANSNGASSPASRMENGARSEEKGDNPS 93
Query: 419 EQRAREFEQRAREHQERDEKEL 440
++R ++ HQ+ ++L
Sbjct: 94 DERGIPQTPQSPSHQQNSSRDL 115
>ref|NP_223443.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 499
Score = 23.9 bits (50), Expect = 9.0
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 205 FFSRVEGIDAGTLGKLFSGSQS 226
FFS+ E D G + K+ +G++S
Sbjct: 18 FFSQSEAFDLGKIAKIKAGAES 39
>ref|NP_223089.1| putative [Helicobacter pylori J99]
Length = 313
Score = 23.9 bits (50), Expect = 9.0
Identities = 18/73 (24%), Positives = 34/73 (45%), Gaps = 14/73 (19%)
Query: 317 KAMEFEEREKEHDERDE-------QETEGRRKALEMDKGDKKEE-------RVKPKENER 362
+A +++ E+E+ + DE Q TE EMDK +EE ++ K+ ++
Sbjct: 17 QATDYDNLEEENQQLDEKINNLKRQLTEKGVSPKEMDKDKFEEEYLERTYPKISSKKRKK 76
Query: 363 EIKQEAIKEPSDG 375
+K +I + G
Sbjct: 77 LLKSFSIADDKSG 89
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.311 0.130 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,288
Number of Sequences: 1491
Number of extensions: 24536
Number of successful extensions: 514
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 100
Number of HSP's gapped (non-prelim): 244
length of query: 452
length of database: 494,079
effective HSP length: 81
effective length of query: 371
effective length of database: 373,308
effective search space: 138497268
effective search space used: 138497268
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)