BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645138|ref|NP_207308.1| hypothetical protein
[Helicobacter pylori 26695]
         (38 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_222771.1|  putative [Helicobacter pylori J99]               28  0.039
ref|NP_223061.1|  putative Outer membrane protein [Helicobac...    21  4.8

>ref|NP_222771.1| putative [Helicobacter pylori J99]
          Length = 69

 Score = 28.1 bits (61), Expect = 0.039
 Identities = 14/26 (53%), Positives = 18/26 (68%), Gaps = 3/26 (11%)

Query: 1  MKTIRNSVFIG---ASLLGGCASVEA 23
          MKTI+N + IG   A LL GC+S +A
Sbjct: 1  MKTIKNGIMIGTLGALLLSGCSSFDA 26



>ref|NP_223061.1| putative Outer membrane protein [Helicobacter pylori J99]
          Length = 479

 Score = 21.2 bits (43), Expect = 4.8
 Identities = 9/21 (42%), Positives = 14/21 (65%)

Query: 4  IRNSVFIGASLLGGCASVEAY 24
          ++N VF G  +L   ASV+A+
Sbjct: 7  LKNKVFCGLYVLSLSASVQAF 27



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.328    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,447
Number of Sequences: 1491
Number of extensions: 624
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 38
length of database: 494,079
effective HSP length: 14
effective length of query: 24
effective length of database: 473,205
effective search space: 11356920
effective search space used: 11356920
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 41 (20.4 bits)