BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645140|ref|NP_207310.1| hypothetical protein
[Helicobacter pylori 26695]
(658 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223180.1| putative [Helicobacter pylori J99] 1100 0.0
ref|NP_223290.1| putative [Helicobacter pylori J99] 225 2e-60
ref|NP_224148.1| putative [Helicobacter pylori J99] 49 4e-07
ref|NP_223674.1| putative [Helicobacter pylori J99] 46 3e-06
ref|NP_222895.1| putative [Helicobacter pylori J99] 45 6e-06
ref|NP_223672.1| putative [Helicobacter pylori J99] 44 2e-05
ref|NP_224149.1| putative [Helicobacter pylori J99] 36 0.004
ref|NP_224019.1| putative [Helicobacter pylori J99] 34 0.013
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 33 0.017
ref|NP_223534.1| putative [Helicobacter pylori J99] 33 0.030
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 32 0.039
ref|NP_223645.1| putative [Helicobacter pylori J99] 32 0.039
ref|NP_223761.1| putative [Helicobacter pylori J99] 32 0.066
ref|NP_223415.1| putative [Helicobacter pylori J99] 32 0.066
ref|NP_222912.1| putative [Helicobacter pylori J99] 31 0.087
ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori... 31 0.11
ref|NP_223788.1| putative [Helicobacter pylori J99] 31 0.11
ref|NP_223498.1| putative [Helicobacter pylori J99] 31 0.11
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 31 0.11
ref|NP_223830.1| putative [Helicobacter pylori J99] 30 0.15
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 30 0.19
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 30 0.19
ref|NP_224105.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE ... 30 0.25
ref|NP_223331.1| putative [Helicobacter pylori J99] 29 0.33
ref|NP_222738.1| putative [Helicobacter pylori J99] 29 0.33
ref|NP_223614.1| putative [Helicobacter pylori J99] 29 0.43
ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter p... 28 0.56
ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 28 0.56
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 28 0.56
ref|NP_223176.1| putative [Helicobacter pylori J99] 28 0.56
ref|NP_222831.1| putative [Helicobacter pylori J99] 28 0.56
ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pyl... 28 0.73
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 28 0.73
ref|NP_223158.1| putative [Helicobacter pylori J99] 28 0.73
ref|NP_223790.1| putative [Helicobacter pylori J99] 28 0.96
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 28 0.96
ref|NP_223778.1| ATP synthase F1, subunit gamma [Helicobact... 27 1.3
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 27 1.3
ref|NP_223025.1| putative [Helicobacter pylori J99] 27 1.3
ref|NP_222840.1| putative [Helicobacter pylori J99] 27 1.3
ref|NP_223659.1| putative [Helicobacter pylori J99] 27 2.1
ref|NP_223651.1| putative [Helicobacter pylori J99] 27 2.1
ref|NP_223539.1| IRON(III) DICITRATE TRANSPORT SYSTEM ATP-B... 27 2.1
ref|NP_223233.1| putative [Helicobacter pylori J99] 27 2.1
ref|NP_223055.1| putative [Helicobacter pylori J99] 27 2.1
ref|NP_222801.1| putative [Helicobacter pylori J99] 27 2.1
ref|NP_223715.1| putative [Helicobacter pylori J99] 26 2.8
ref|NP_223610.1| putative [Helicobacter pylori J99] 26 2.8
ref|NP_222991.1| putative [Helicobacter pylori J99] 26 2.8
ref|NP_222820.1| CYSTEINE SYNTHASE [Helicobacter pylori J99] 26 2.8
ref|NP_224134.1| putative [Helicobacter pylori J99] 26 3.6
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 26 3.6
ref|NP_223787.1| putative [Helicobacter pylori J99] 26 3.6
ref|NP_223590.1| putative [Helicobacter pylori J99] 26 3.6
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 26 3.6
ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter py... 26 3.6
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 26 3.6
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 26 3.6
ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori ... 26 3.6
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 26 3.6
ref|NP_222781.1| putative [Helicobacter pylori J99] 26 3.6
ref|NP_223988.1| putative [Helicobacter pylori J99] 25 4.8
ref|NP_223550.1| putative [Helicobacter pylori J99] 25 4.8
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 25 4.8
ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicob... 25 4.8
ref|NP_222877.1| putative [Helicobacter pylori J99] 25 4.8
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 25 6.2
ref|NP_223737.1| UDP-GLUCOSE 4-EPIMERASE [Helicobacter pylo... 25 6.2
ref|NP_223159.1| putative [Helicobacter pylori J99] 25 6.2
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 25 8.1
ref|NP_223649.1| putative [Helicobacter pylori J99] 25 8.1
ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobac... 25 8.1
ref|NP_223219.1| putative [Helicobacter pylori J99] 25 8.1
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 25 8.1
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 25 8.1
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 1100 bits (2846), Expect = 0.0
Identities = 559/662 (84%), Positives = 598/662 (89%), Gaps = 11/662 (1%)
Query: 1 MNGHFIGSILYVLDSNTHSNNTLLIIDGQQRLTTITLLLIALRNHLSEEVEILEKFSRKE 60
+NGHFIGSILYVLD NT S+ LLIIDGQQRLTTITLL IALR+HLS+EV+ R+E
Sbjct: 52 INGHFIGSILYVLDGNTPSS-PLLIIDGQQRLTTITLLCIALRSHLSDEVK------REE 104
Query: 61 IESYLINSNKDGDKKFRLILSESDKDTLLSLIDKNKRKPSEPSVKIVENFELFEKWISEN 120
IESYLINS+KDGDKKFRLILSESDKDTLLSLIDKNKRKPSEPSVKI+ENF+LFEKWIS+N
Sbjct: 105 IESYLINSDKDGDKKFRLILSESDKDTLLSLIDKNKRKPSEPSVKIMENFKLFEKWISKN 164
Query: 121 TDKLETIFKGLKKLMIVWISLDKGKDDPQLIFESMNSKDIELTQTDLIRNYIVMETEVE- 179
TDKLETIFKGL+KLMIV+I+LDK KDDPQLIFESMNSK IELTQTDLIRNYI+METE E
Sbjct: 165 TDKLETIFKGLEKLMIVYIALDKEKDDPQLIFESMNSKGIELTQTDLIRNYIIMETETEE 224
Query: 180 KQEDFYNQYWRAMEERFEQNETLFNRFVRHYLTIKIGKIPNEKRVYEAFKDYRQKKGIEI 239
KQ+DFYN YWRAMEE F+QNETLFNRFVRHYLTIK GKIPN K+VY AFKDY+QK+GIEI
Sbjct: 225 KQKDFYNGYWRAMEEDFKQNETLFNRFVRHYLTIKTGKIPNIKKVYGAFKDYQQKEGIEI 284
Query: 240 EDLLKDLQKYCGYFCQIAFKKEDDKDLNKALSFLVNLEMDVIYPLLLELYSDYKDGVLSK 299
EDLLKDLQKYCGYFCQIAFKKE +KDLNKALSFLV+LEMDV+YPLLLELYSDY DGVLS
Sbjct: 285 EDLLKDLQKYCGYFCQIAFKKEANKDLNKALSFLVDLEMDVVYPLLLELYSDYSDGVLSD 344
Query: 300 QDFIPIIYLIESYICRRAVCGLGTNSLNKVFPSFTKHIQKDEYFKSLKAHFVCLTEKQRF 359
QDF I L ESY+CRRAVCGLGTNSLNK+FP FTK I K +Y KS++ HF L KQRF
Sbjct: 345 QDFTTISTLTESYLCRRAVCGLGTNSLNKIFPFFTKKIDKKQYLKSVEKHFGSLKGKQRF 404
Query: 360 PNNDEFKKLFITIDFYKFKKNKYFLERLENFDTKEPVDTQKCNIEHIMPQTLTPEWQRDL 419
PNNDEFK FITIDFYKFKKNKYFLERLE FDT EPVDTQKC IEHIMPQTL P+W+ DL
Sbjct: 405 PNNDEFKDSFITIDFYKFKKNKYFLERLEKFDTNEPVDTQKCEIEHIMPQTLNPKWEGDL 464
Query: 420 GENFQAIHEKYLHTIGNLTLTGYNSKYSNNSFQEKRDMEKGFKQSSLKLNQSLKDLESFG 479
GENF+AIHEKYLHTIGNLTLTGYN+KYSN SFQEKRDMEKGFKQSSLKLN++LKDLE FG
Sbjct: 465 GENFEAIHEKYLHTIGNLTLTGYNAKYSNKSFQEKRDMEKGFKQSSLKLNKNLKDLEPFG 524
Query: 480 EKEIEKRASDLADWALKIWTYPILEAETLEEYKP---KKEKKEKKEKEEYKLKKEKKVYD 536
EKEIEKRASDL DWALKIWTYPILEAETLEEYKP KKEKKEKKEKEEYKLKKEKKVYD
Sbjct: 525 EKEIEKRASDLVDWALKIWTYPILEAETLEEYKPKKEKKEKKEKKEKEEYKLKKEKKVYD 584
Query: 537 LSSYKFSSDSRELFDILREKIKALDERITEKFNQKYIAYKFCKISFVDIVVQEKGLKLYL 596
LSSYKFS SRELFDILR++IK LDER+TE FN KYIAYKF KI+FVDIVVQ K LKLYL
Sbjct: 585 LSSYKFSPHSRELFDILRKEIKTLDERVTENFNSKYIAYKFFKINFVDIVVQNKVLKLYL 644
Query: 597 KMNLNELQDEIKEKLKIRDVSNIGRPCVGNMEVELETKENIPYCLGLIKQALEKQMGGRN 656
KM NELQDEIKEKLKIRDVSNIG PC +MEVELETKENIPYCLGLI+QALEKQMGGRN
Sbjct: 645 KMEFNELQDEIKEKLKIRDVSNIGCPCSEDMEVELETKENIPYCLGLIRQALEKQMGGRN 704
Query: 657 RQ 658
RQ
Sbjct: 705 RQ 706
>ref|NP_223290.1| putative [Helicobacter pylori J99]
Length = 683
Score = 225 bits (574), Expect = 2e-60
Identities = 180/611 (29%), Positives = 293/611 (47%), Gaps = 65/611 (10%)
Query: 4 HFIGSILYVL-----DSNTHSNNTLLIIDGQQRLTTITLLLIALRNHLSEEVEILEKFSR 58
HF+GSI Y+L + + +IIDGQQR+TTI LLL A+ E +I + +
Sbjct: 52 HFMGSITYILHLIDDEKSLRQLQEFVIIDGQQRITTIMLLLKAI------ETKIQNEGIK 105
Query: 59 KEIESYLINSNKDGDKKFRLILSESDKDTLLSLIDKNKRKPSEPSVKIVENFELFEKWIS 118
KEI+ L N G ++ RL +SDK+ L+ +N+ + I N++ F K +
Sbjct: 106 KEIDGLL---NLSG-QRLRLKPIKSDKEAF-DLVMQNRSHEIQGVSHIKNNYKFFTKELD 160
Query: 119 ENTDK---LETIFKGLKKLMIVWISLDKGKDDPQLIFESMNSKDIELTQTDLIRNYIVME 175
K +E I+ L IV I L+ G+DDPQ++FES+N+ ++L DLIRNY++M
Sbjct: 161 NYISKGYRIEEIYGAFLWLKIVAIGLELGEDDPQVVFESINATGVQLKGLDLIRNYLMMG 220
Query: 176 TEVEKQEDFYNQYWRAMEERFEQNETLFNRFVRHYLTIKIGK--IPNEKRVYEAFK-DYR 232
+ Q YN YW +E + + N F++ YL I E+ VY A K +R
Sbjct: 221 ENSDNQNRLYNTYWVPLENWLGEKD--LNDFIKTYLRIYFEDRVKEGEREVYYALKAHHR 278
Query: 233 QKKGIEIEDLLKDLQKYCGYFCQIAFKK----------EDDKDLNKALSFLVNLEMDVIY 282
I+ L+ D+++Y G QI + + +L + LV ++ V
Sbjct: 279 DNFPNNIQGLMSDMREY-GRIFQIFLDRDHYFLHRGDPQQLANLRLRVKDLVKIKFGVAK 337
Query: 283 PLLLELYSDYKDGVLSKQDFIPIIYLIESYICRRAVCGLGTNSLNKVFPSFTKHIQKDEY 342
P +L D+++G L ++F I+ ++ SY RR+VCG T +L +V S + + +D
Sbjct: 338 PFVLRCARDFEEGKLDYENFHEILQILISYFVRRSVCGDSTPTLTRVLYSLYRQLGEDVS 397
Query: 343 FKSLKAHFVCLTEKQRFPNNDEFKKLFITIDFYKFKK-NKYFLERLENFDTKEPVDTQKC 401
+LK + + FPN+D+ K F+ + Y + K+ L +E EP +
Sbjct: 398 ADALKRYLGKSVGQMAFPNDDKIKAAFLVRNAYAANQVCKFILLEIEKLSNAEPPKEENL 457
Query: 402 NIEHIMPQTLTPEWQRDLGENFQAIHEKYLHTIGNLTLTGYNSKYSNNSFQEKRDMEKGF 461
+EH P+T T EW+ +G+ F + YL+ GNLTL+G N + N S++ K + + +
Sbjct: 458 EVEHFYPKTPTQEWRDRVGDYF-TFEQDYLNNFGNLTLSGQNQRLGNKSYEAKIALMEEY 516
Query: 462 KQSSLKLNQSL-KDLESFGEKEIEKRASDLADWALKIWTYPILEAETLEEYKPKKEKKEK 520
SSL LN + +S+G +E+ R+ LAD ++ + K KE
Sbjct: 517 --SSLHLNDYFTNNTDSWGIEEVRARSEYLADQFCQVGLF-------------KDLPKEY 561
Query: 521 KEKEEYK-LKKEKKVYDLSSYKFSSDSREL-----------FDILREKIKALDERITEKF 568
+ +E +K L ++L S K +D R + D L E + E T+
Sbjct: 562 RARELHKTLDDNLTNHNLQSVKLPNDQRRMAGNAKELASVVIDYLLENAREAFESYTDDE 621
Query: 569 NQKYIAYKFCK 579
+QKYI + K
Sbjct: 622 SQKYIYWSKAK 632
>ref|NP_224148.1| putative [Helicobacter pylori J99]
Length = 282
Score = 48.9 bits (115), Expect = 4e-07
Identities = 50/212 (23%), Positives = 98/212 (45%), Gaps = 15/212 (7%)
Query: 2 NGHFIGS-ILYVLDSNTHSN-NTLLIIDGQQRLTTITLLLIALRNHLSEEVEILEKFSRK 59
+G+F GS +L V+++++ +N T I+DGQQRL+T LL L ++ L+ SR+
Sbjct: 57 SGYFCGSLVLIVINTDSETNAETYDIVDGQQRLSTFILLAKVLATLYDKD---LDTTSRE 113
Query: 60 EIESYLINSNKDGDKKFRL---ILSESDKDTLLSLI----DKNKRKPSEPSVKIVENFEL 112
+E L + G+K+ RL + + KD + + D K ++N
Sbjct: 114 LLEKSL--GDTGGEKRERLHFNAMGLNAKDDFVYALEHFNDSQASKNKNNKNNYLKNAIC 171
Query: 113 FEKWISENTDKLETIFKGLKKLMIVWISLDKGKDDPQL-IFESMNSKDIELTQTDLIRNY 171
+ ++ E K F +V+I L IF +N++ + L D+ +
Sbjct: 172 LKDYLKEKEIKDINAFITWLYFKVVFIKTTCPNVSMALRIFSVLNARGLPLHAIDVFKVE 231
Query: 172 IVMETEVEKQEDFYNQYWRAMEERFEQNETLF 203
++ + +K ++ + W A+ ++ +NE+ F
Sbjct: 232 LLKKLAQKKDQEEFLSRWSALHQKCSENESKF 263
>ref|NP_223674.1| putative [Helicobacter pylori J99]
Length = 200
Score = 46.2 bits (108), Expect = 3e-06
Identities = 43/131 (32%), Positives = 61/131 (45%), Gaps = 12/131 (9%)
Query: 371 TIDFYKFKKNKYFL----ERLENFDTKEPVDTQKCNIEHIMPQTLTPEWQRDLGENFQAI 426
T +YK+ K +L E N +T D +IEHI+PQ P+ E A
Sbjct: 50 TEKWYKWGKTLNYLLYEYELYHNPETTLNFDGSIESIEHILPQK--PDQGYSAKEKNWAK 107
Query: 427 HEKYLHTIGNLTLT--GYNSKYSNNSFQEKRDMEKGFKQSSLKLNQSLKDLESFGEKEIE 484
+ +H +GNL L NS SN F EKR K + + S + K+ SFG EI+
Sbjct: 108 NPHVVHALGNLLLIPKNANSSLSNKPFDEKR---KEYLKGSYSEKEVAKNA-SFGITEIQ 163
Query: 485 KRASDLADWAL 495
KR+ L D+ +
Sbjct: 164 KRSEKLLDFLI 174
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 45.1 bits (105), Expect = 6e-06
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 19/178 (10%)
Query: 3 GHFIGSILYVLDSNTHSNNTLLIIDGQQRLTTITLLLIALRNHLSEEVEILEKFSRKEIE 62
GHFIG++ V+ N + IIDGQQR TTI +LL L + EE ++E
Sbjct: 49 GHFIGTM--VVAKNEDNKKLYDIIDGQQRTTTIFMLLHVLVSKQYEE-------DKRETR 99
Query: 63 SYLINSNKDGDKKFRLI-LSESDKDTLLSLIDKNKRKPSEPSVKIVENFELFE--KWISE 119
YL + G+ K + ++S TLL + +K E LFE K I +
Sbjct: 100 KYLY---QKGELKLEVASQNQSFFKTLLEVAEKGNISHCEKDADTEGKQNLFEVLKAILD 156
Query: 120 NTDKL--ETIFKGLKKLMIVWISLDKGKDDPQLI--FESMNSKDIELTQTDLIRNYIV 173
KL E + + L+ L+ + + + D + I F+S+N + + L D +++ ++
Sbjct: 157 KISKLSEEEVNERLEVLLKMVLMRLEEPDPGKAIRTFQSVNDRGVPLLLLDKLKSLLI 214
>ref|NP_223672.1| putative [Helicobacter pylori J99]
Length = 217
Score = 43.5 bits (101), Expect = 2e-05
Identities = 41/169 (24%), Positives = 83/169 (48%), Gaps = 13/169 (7%)
Query: 4 HFIGSILYVLDSNTHSNNTLLIIDGQQRLTTITLLLIALRNHLSEEVEILEKFSRKEIES 63
H++ S+ N ++ IIDGQQRL T +L+L+ L ++ + K++ +E
Sbjct: 49 HYMHSLTLRGLENELEDSAFEIIDGQQRLAT-SLILLGLLAKTTKHKD--PKYNSMNLEP 105
Query: 64 YLINSNKDGDKKFRLILSESDKDTLLSLIDKNKRKPSEPSVKIVENFELFEKWISEN-TD 122
L ++ F I+ E D + + S + +++ + F++ IS+ +
Sbjct: 106 VLSYKYYGLNEAFGAIMGEEK--------DLERFQTSFYAKNLIDAYAFFKEKISDTPME 157
Query: 123 KLETIFKGLKKLMIVWIS-LDKGKDDPQLIFESMNSKDIELTQTDLIRN 170
LE +F L K M+ ++ L+ + DP FE++N++ +L+ +L +N
Sbjct: 158 TLEKMFDVLTKKMLFSVAELNDNRIDPFSSFETINNRGKDLSTLELFKN 206
>ref|NP_224149.1| putative [Helicobacter pylori J99]
Length = 293
Score = 35.8 bits (81), Expect = 0.004
Identities = 22/67 (32%), Positives = 35/67 (51%), Gaps = 11/67 (16%)
Query: 402 NIEHIMPQTLTP--EWQRDLGENFQAIHEKYLHTIGNLTLTGYN------SKYSNNSFQE 453
++E I+PQ P +W +D E + E Y H++ NLTL G S+ N F+E
Sbjct: 178 HVERILPQNPDPSSQWVKDFSEEER---ELYTHSLANLTLLGGTKNTKALSQALNQDFKE 234
Query: 454 KRDMEKG 460
K+++ G
Sbjct: 235 KKEIYMG 241
>ref|NP_224019.1| putative [Helicobacter pylori J99]
Length = 314
Score = 33.9 bits (76), Expect = 0.013
Identities = 38/189 (20%), Positives = 89/189 (46%), Gaps = 26/189 (13%)
Query: 25 IIDGQQRLTTITLL---LIALRNHLSEEVEILEKFSRKEIESYLINSNKDGDKKFRLILS 81
++DGQQRLT+ +L ++ L H L + S+ IE + + + ++ + + +
Sbjct: 75 VVDGQQRLTSFIILACTILRLYKHR------LGQKSKAFIEESIYDRHDKEKERLKFLTA 128
Query: 82 ES-----DKDTLLSLIDKNKRKPSEPSVKIVENFEL-----FEKWISENTDK-----LET 126
++ + L +L ++ K SE + K EN L F + ++E+ + ++
Sbjct: 129 QNYNSIFENTVLKNLEFEDNIKKSEWNKKFDENTYLRNAYYFRELLNESMENGSISDMDD 188
Query: 127 IFKGLKKLMIVWISLDKGKDDPQLIFESMNSKDIELTQTDLIRNYIVME--TEVEKQEDF 184
K + + + + +D IF+ +N + L+ D++++ ++ E + EK++DF
Sbjct: 189 FVKWFYEHIALTRIICFEQDSAMQIFQVLNDRGQPLSPIDILKSSLMQEIKQDSEKRKDF 248
Query: 185 YNQYWRAME 193
+ + +E
Sbjct: 249 ITTWDKLVE 257
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 33.5 bits (75), Expect = 0.017
Identities = 55/280 (19%), Positives = 112/280 (39%), Gaps = 32/280 (11%)
Query: 41 ALRNHLSEEVEILEKFSRKEIESYLINSNKDGDKKFRLILSESDKDTLLSLID-KNKRKP 99
AL + +E L+K SR +E + + N F++ SD+ D K K
Sbjct: 456 ALEDENNESTAGLDKSSRDFLEGAIADYNG----MFQISFDTSDQKFQSYYKDLSQKMKE 511
Query: 100 SEPSVKIVENF--------ELFEKWISENT---------DKLETIFKGLKKL--MIVWIS 140
E + +V N L W+ +N + I +K ++ +
Sbjct: 512 REIDLLLVANMFLTGFDATRLNTLWVDKNLKYHGLIQAFSRTNRILDSVKTHGNIVCFRD 571
Query: 141 LDKGKDDPQLIFESMNSKDIELTQTDLIRNYIVMETEVEKQEDFYNQYWRAMEERFEQNE 200
L++ +D ++F + +++ I L + +Y+ + K+ + Y + F E
Sbjct: 572 LEQDLNDALMLFGNKDARSIALLRK--YEDYLKGYADNNKEYEGYEGLIERLLTEFPLKE 629
Query: 201 TLFNRFVRHYLTIKIGKIPNEKRVYEAFKDYRQKKGIEIEDLLKDLQKYCGYFCQIAFKK 260
+ + + GKI + + +F+++ + I D KY ++ ++ +K
Sbjct: 630 PIISESQKKDFIKLFGKILKLENILNSFENFNKDDHINPRDFQDYQSKYLDFYDEMRPEK 689
Query: 261 EDDK-DLNKALSFLVNL----EMDVIYPL-LLELYSDYKD 294
DK ++N L F + L E+++ Y L L+E Y+ D
Sbjct: 690 GRDKEEINDDLIFEIELIKQVEVNIDYILTLIEKYAKEPD 729
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 32.7 bits (73), Expect = 0.030
Identities = 39/151 (25%), Positives = 70/151 (45%), Gaps = 23/151 (15%)
Query: 480 EKEIEKRASDLADWALKIWTYPILEAETLEEYKPKKEKKE-------KKEKEEYKLKKEK 532
+KE++K A++ +W + IL+ + K + E + E+EEY KKE
Sbjct: 18 QKELKKAAAENKLQTEDLW-FEILKTSIFIKNSAKDDFSEAFGGELQQLEEEEYYEKKEL 76
Query: 533 KVYDLSSYKFSSDSRELF-------DILREKIKALDERI----TEKFNQKYIAYKFCKIS 581
+Y K S++ + F D+ + +I LDE TE++ Q+ AY +++
Sbjct: 77 TLYQTHDIKIKSNAYKRFFEVKVDEDLSKIEI-ILDECFIVLDTEEYYQEMFAYIKERLA 135
Query: 582 FVDIVVQEKGLKLY--LKMNLNELQDEIKEK 610
F +V + ++Y LK L + Q E + K
Sbjct: 136 FEGVVFRHFS-QMYENLKTELRKYQKEAQNK 165
Score = 25.4 bits (54), Expect = 4.8
Identities = 15/63 (23%), Positives = 30/63 (46%), Gaps = 5/63 (7%)
Query: 152 FESMNSKDIELTQTDLIRNYIVMETEVEKQEDFYNQYWRAMEERFEQNETLFNRFVRHYL 211
FE +D+ + L +IV++TE ++Y + + ++ER +F F + Y
Sbjct: 95 FEVKVDEDLSKIEIILDECFIVLDTE-----EYYQEMFAYIKERLAFEGVVFRHFSQMYE 149
Query: 212 TIK 214
+K
Sbjct: 150 NLK 152
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 32.3 bits (72), Expect = 0.039
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 515 KEKKEKKEKEEYKLKKEKKVYDLSSYKFSSDSRELFDILREKIKALDERITEKFNQKYIA 574
KE++ + + K++K K YD S S +FDI E+IK +I E +
Sbjct: 454 KERRFILVQLDEKIEKNKSAYDFCLNTLKSTSPSIFDITEERIKRAGAKIKEACAHLDVG 513
Query: 575 YKFCKISFVDIVVQEKGL------KLYLKMNLNELQDE 606
++ +I + +K L L+ NL+ ++ +
Sbjct: 514 FRAFEIIDDETHTNDKNLGEAHQKDLFAYSNLDRMETQ 551
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 32.3 bits (72), Expect = 0.039
Identities = 37/145 (25%), Positives = 58/145 (39%), Gaps = 19/145 (13%)
Query: 447 SNNSFQEKRDMEKGFKQSSLK--------LNQSLKDLESFGEKEIEKRASDLADWALKIW 498
S S + + E F + SLK L Q LKDLE+ I +++ + LK
Sbjct: 2042 SEESKYKAFNKEHYFNEESLKNNASKLDYLKQELKDLETLQRSVIIPTHTEIKLYDLKNE 2101
Query: 499 TYPILEAETLEEYKPKKEKKEKKEKEEYKLKKE---------KKVYDLSSYKFSSDSREL 549
E ++E +P KE E+ +K KE K+ D +F+S+ L
Sbjct: 2102 ESKDYELIKVKEVEPLKENASMSEELTHKKLKEQNKQIAEQNKEKLDAIKKQFASNLNTL 2161
Query: 550 FDILREKIKALDER--ITEKFNQKY 572
F E K L+ + + + KY
Sbjct: 2162 FVNEEEDYKLLEYKGFVVNAYKTKY 2186
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 31.6 bits (70), Expect = 0.066
Identities = 35/131 (26%), Positives = 61/131 (45%), Gaps = 16/131 (12%)
Query: 436 NLTLTGYNSKYSNNSFQEKRDMEKGFKQSSLKLNQSLKDLESFGEKEIEKRASDLADWAL 495
NL L+ NSK++NN+ + ++ G KQ+S ++ + D + EK ++ +L + A
Sbjct: 36 NLELSAKNSKFTNNTLKIIEELNNGVKQASEEIKEKAFDFSN--EKLTNEQIKELLNNA- 92
Query: 496 KIWTYPILEAET---------LEEYKPKKEKK---EKKEKEEYKLKKEKKVYDLSSYKFS 543
KI T +A T + E+ K KK EK +E +L K+ + + S
Sbjct: 93 KIPTSG-RDAITFGTNNLNPEMVEFLHKNNKKMIIEKASNKELELLKDANFKHPENIRAS 151
Query: 544 SDSRELFDILR 554
D + IL+
Sbjct: 152 LDHDAIAHILK 162
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 31.6 bits (70), Expect = 0.066
Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 27/191 (14%)
Query: 426 IHEKYLHTIGNLTLTGYNSKYSNNSFQEKRDMEKG---FKQSSLKLNQSLKDLESFGEKE 482
+ +K + G L G ++K FQ K +E K KL Q ++ +
Sbjct: 26 VMKKIYYARGQAILKGASAKAKLMEFQAKSFVEAEEMRMKSQECKLQQQYENKNLQLQTH 85
Query: 483 IEKRASDLADWALKIWTYPILEAETLEEYKPKKEKKEKKEKEEYKLKKEKKVYDLSSYKF 542
+K+ + L LEA+ E + +K EK++KE L+KE+++ + F
Sbjct: 86 FDKKEAHLKH----------LEAQHKEFVRDEKRYLEKEKKE---LEKERQILEQERENF 132
Query: 543 SSDSRELFDILRE-KIKALDERITEKFNQKYIAYKFCKISFVDIVVQEKGLKLYLKMNLN 601
I +E + KALD + Y+AY +I + + E+ L+ +
Sbjct: 133 KKQRA----ICKEAQAKALDAML------NYMAYTKDEIKSMILEQLEEELEAQKSALIR 182
Query: 602 ELQDEIKEKLK 612
+ E KE+ K
Sbjct: 183 RYEKEAKEEGK 193
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 31.2 bits (69), Expect = 0.087
Identities = 87/407 (21%), Positives = 156/407 (37%), Gaps = 60/407 (14%)
Query: 240 EDLLKDLQKYCGYFCQIAFKKEDDKDLNKALSFLVNLEMDVIYPLLLELYSDYKDGVLSK 299
E ++ L + C F I +D ++ +S +NL Y LL YKD +
Sbjct: 27 EKHVEALGEQCSNFVSIPINNDDYSNICTFVSDFINLIAS--YNLLESFLDFYKDKLKLS 84
Query: 300 QDFIPIIYLIESYICRRAVCGL-GTNSLNKVFPSFTKHIQK----------DEYF----- 343
+ + + + ++ + L G N L K F + I K +++F
Sbjct: 85 ELVTEYANVTNNLLFKKLIKHLSGNNQLVKNFYQCIREIIKYNAPNKEYKPNQFFIIGKG 144
Query: 344 -----KSLKAHFVCLTEKQRFPNN--------DEFKKLFITIDFYKFKKNKYFLERLENF 390
+ +H L+ + P + +E K+F T DF KF + ++
Sbjct: 145 KQKQLAKIYSHLKELSASEIKPQDMEDILKKLEELDKIFKTTDFTKFTPKTEIKDIIKEI 204
Query: 391 DTKEPVDTQKCNIEHIMPQTLTPEWQRDLGENFQAIHEKYLHTIGNLTLTGYNSKYS--- 447
D K P++ + + E ++ ++F+ E + I N NS+
Sbjct: 205 DEKYPINENFKRQFNEFESNI--EKHDEIKKDFERNKESLIREIENHCKNECNSEEEPEY 262
Query: 448 --NNSFQEKRDMEKGFKQSSLKLNQSLKDLES----FGEKEIE---------KRASDLAD 492
N+ + + + K + +S +N KD++S F K+I+ R S+L +
Sbjct: 263 KINDLLKNIQQICKNYIESH-AVNDVSKDIKSMMCQFYLKQIDLLVNSEIVRYRYSNLFE 321
Query: 493 WALK-IW-TYPILEAETLEEYKPKK--EKKEKKEKEEYKLKKEKKVYDLSSYKFSSDSRE 548
+ +W + IL+ E+ PK E K+K E + K K+ K V + + Y +
Sbjct: 322 PIQRSLWESIKILDNESGIYLFPKNIGEIKDKFEANKEKFKQSKNVSEFAEYCRECNPYT 381
Query: 549 LFDILREKIKALDERITEKFNQKYIAYKFCKISFVD---IVVQEKGL 592
F+ L + EKF YK KI+ D I +E GL
Sbjct: 382 AFNFHLNINNGLSHQF-EKFVPIMKEYKEPKITDNDLEAISTKETGL 427
Score = 26.2 bits (56), Expect = 2.8
Identities = 47/255 (18%), Positives = 97/255 (37%), Gaps = 47/255 (18%)
Query: 34 TITLLLIALRNHLSEEVEILEKFSRKEIESYLINSNKDGDKKFRLILSESDKDTLLSLID 93
T LL L HLS ++++ F + E N+ K + + K L+ I
Sbjct: 94 TNNLLFKKLIKHLSGNNQLVKNFYQCIREIIKYNAPNKEYKPNQFFIIGKGKQKQLAKIY 153
Query: 94 KNKRKPSEPSVKIVENFELFEKWISENTDKLETIFKGLKKLMIVWISLDKGKDDPQLIFE 153
+ ++ S +K +E I K L++L ++ + D K P+ +
Sbjct: 154 SHLKELSASEIK---------------PQDMEDILKKLEELDKIFKTTDFTKFTPKTEIK 198
Query: 154 SMNSKDIEL--TQTDLIRNYIVMETEVEKQEDFYNQYWRAMEERFEQNETLFNRFVRHYL 211
+ + E + R + E+ +EK ++ +++ FE+N+ R + ++
Sbjct: 199 DIIKEIDEKYPINENFKRQFNEFESNIEKHDE--------IKKDFERNKESLIREIENHC 250
Query: 212 TIKIGKIPNEKRVYEAFKDYRQKKGIEIEDLLKDLQKYCGYFCQIAFKKEDDKDLN---- 267
+ ++ +I DLLK++Q+ C + + + KD+
Sbjct: 251 KNECNS--------------EEEPEYKINDLLKNIQQICKNYIESHAVNDVSKDIKSMMC 296
Query: 268 ----KALSFLVNLEM 278
K + LVN E+
Sbjct: 297 QFYLKQIDLLVNSEI 311
>ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 415
Score = 30.8 bits (68), Expect = 0.11
Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 12/92 (13%)
Query: 553 LREKIKALDERITEKFNQKYIAYKFCKI------SFVDIVVQEKGLKLYLKMNLNELQDE 606
L+++ A+D+ + E+ + YK I +F + V +E G+K+ KM+ ++L+ E
Sbjct: 18 LKKRNHAMDDEL-ERLREAIAHYKKQLIELEGLQAFQNKVSKEFGIKMAQKMDTSDLKKE 76
Query: 607 IK-EKLKIRDVSNIGRPCVGNMEVELETKENI 637
++ K+K+ ++S VG E E++ K +I
Sbjct: 77 LENNKIKLNELSK----SVGEAEQEMDLKLSI 104
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 30.8 bits (68), Expect = 0.11
Identities = 25/105 (23%), Positives = 54/105 (50%), Gaps = 8/105 (7%)
Query: 457 MEKGFKQSSLKLNQSLKDLESFGEKEIEKRASDLADWALKIWTYPILEAETLEEYKPKKE 516
+E+ K + L+ + L+ L+ KE+++++ + + K L+ E E K
Sbjct: 99 IEEARKNAFLEQQKGLELLQ----KELDEKSKQVQELHQKEAEIERLKRENNEAESRLKA 154
Query: 517 KKEKKEKEEYKLKK---EKKVYDLSSYKFSSDSRELFDILREKIK 558
+ EKK E+ +L++ EK +++ + KF +L ++LR ++K
Sbjct: 155 ENEKKLNEKLELEREKIEKALHEKNELKFKQQEEQL-EMLRNELK 198
>ref|NP_223498.1| putative [Helicobacter pylori J99]
Length = 245
Score = 30.8 bits (68), Expect = 0.11
Identities = 32/120 (26%), Positives = 57/120 (46%), Gaps = 14/120 (11%)
Query: 501 PILEAETLEEYKPKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSSDSREL---------FD 551
P++E + L+E K+ KE +E L EK ++ SS +F + + L F
Sbjct: 96 PVIEMKKLKEILSAKDNTPLKEYKE--LLSEKLIHAKSSQEFLNTANMLLSLQSQVLSFV 153
Query: 552 ILREKIKALDERITEKFNQKYIAY--KFCKISFVDIVVQEKGLKLYLKMNLNELQDEIKE 609
+ E+ KA + +K + + A +I V I ++EK +L+LK L ++ +KE
Sbjct: 154 VENERKKAFLQMKAKKQSVDFYALYPNLGEIGGV-IYLKEKEKQLFLKTTLQRTKEVLKE 212
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 30.8 bits (68), Expect = 0.11
Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 31/191 (16%)
Query: 457 MEKGFKQSSLKLNQSLKDLESFGEKEIEKRASDLADWALKIWTYPILEAETLEEYKPKKE 516
+E+ S L N+ ++ + EKE K+ ++LA + LK + +
Sbjct: 286 IEELIANSQLIANEEEREKKLLAEKE--KQETELAKYKLK---------------DLENQ 328
Query: 517 KKEKKEKEEYKLKKEKK--VYDLSSYKFSSDSRELFDILREKIKALDERITEKFNQKYIA 574
KK K + E K K KK V ++ +SDS E +++EK E +N +
Sbjct: 329 KKLKALEAELKKKNTKKPRVVEVPIPPKTSDSDETMRVIKEK---------ENYNGLLVD 379
Query: 575 YK-FCKISFVDIVVQEKGLKLYLKMNLNELQDEIKEKLKIRDVSNIGRPCVGNMEVELET 633
+ K S+ ++ E +NL +L+ ++E++K V + G + + ++
Sbjct: 380 KETTIKRSYKGTLISENSYSKKTPINLEDLR-SLEEEIKSYYVKSNGLCYANGINLYVKI 438
Query: 634 KENIPYCLGLI 644
K N PY G++
Sbjct: 439 K-NDPYKEGML 448
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 30.4 bits (67), Expect = 0.15
Identities = 32/136 (23%), Positives = 64/136 (46%), Gaps = 6/136 (4%)
Query: 464 SSLKLNQSLKDLESFGE-KEIEKRASDLADWALKIWTYPILEAETLEEYKPKKEK-KEKK 521
+++ +N D +S E + +K A + D A K E + E+ K K E+ K+K
Sbjct: 86 TAMLMNVCFADDQSKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKT 145
Query: 522 EKEEYKLKKEKKVYDLSSYKFSS-DSRELFDILREKIKALDERITEKFNQKYIAYKF--- 577
E+E+ K ++EK+ + K S+ ++ + +E+ K E+ QK + K
Sbjct: 146 EQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQN 205
Query: 578 CKISFVDIVVQEKGLK 593
C+ + +++ G+K
Sbjct: 206 CQENHNQFFIKKLGIK 221
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 30.0 bits (66), Expect = 0.19
Identities = 61/266 (22%), Positives = 102/266 (37%), Gaps = 65/266 (24%)
Query: 374 FYKFKKNKYFLERLENFDTKEPVDTQKCNIEHIMPQTLTPEWQRDLGENFQAIHEKYLHT 433
F FK+ K L + + + + T+ NI+ ++ Q+L +Q H L
Sbjct: 479 FQVFKELKNTLFKKSDKEGYYALKTECENIKDLITQSL----------EYQTFHASVLSA 528
Query: 434 IGNLTLTGYNSKYSNNSFQEKRDMEKGFKQSSL---------KLNQSLKDLESFGEKEIE 484
+L L F D+E GF +L K + + L+ +G ++
Sbjct: 529 FESLDL-----------FTTFNDLEPGFNPKTLIESVCSKVLKEFEKVGILDKYGVYQLF 577
Query: 485 KRASDLA---DWALKIWTYPILEAETLEEYKPKKEKKEKK---EKEEYKLKKEKKVYDL- 537
K + DW L I A+ L + P K+K +K E+ ++ ++K DL
Sbjct: 578 KDYYNEVLQDDWFL-ISFNGFRSAKELRKLTPLKDKNKKANYLEEPDFIVQKTYYKSDLI 636
Query: 538 -----SSYKFSSDSRELFDI---LREKIKALDERITEKFNQKYIAYKFCKISFVDIVVQE 589
F +++EL ++ L EK LDE I E N E
Sbjct: 637 PKHLIKQRFFEKETKELEELENALNEKEALLDEFIEEHSN-------------------E 677
Query: 590 KGLKLYLKMNLNELQDEIKEKLKIRD 615
+GL LK+N + L+ E+K + D
Sbjct: 678 EGLFDGLKINESVLKKELKNATDLED 703
Score = 26.6 bits (57), Expect = 2.1
Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 8/148 (5%)
Query: 335 KHIQKDEYFKSLKAHFVCLTEKQRFPNNDEFKKLFITIDFYKFKKNKYFLER---LENFD 391
+H ++ F LK + L ++ + + E K++ T + KNK + E +
Sbjct: 673 EHSNEEGLFDGLKINESVLKKELKNATDLEDKQILKTALEWLEAKNKALKMKNKAYEELE 732
Query: 392 TKEPVDTQKCNIEHIMPQTLTPEWQRDLGENFQAIHEKYLHTIGNLTLTGYNSKYSNNSF 451
K + I I + +W L + +K + + L S YSN+
Sbjct: 733 LKAFHQYKNLEINEIKDLIIKDKWLNSLKNALENKIQKRTNAFAS-ALNEIISSYSNSLL 791
Query: 452 QEKRDMEKGFKQSSLKLNQSLKDLESFG 479
+ ++K K+S K+ + LKDL G
Sbjct: 792 E----LDKEVKESESKVLEHLKDLGLMG 815
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 30.0 bits (66), Expect = 0.19
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 509 EEYKPKKEKKEKKEKEEYKLKKEKK 533
E KPK+E KEK +KEE K ++ KK
Sbjct: 69 ESAKPKEEPKEKPKKEEPKKEEPKK 93
>ref|NP_224105.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE [Helicobacter pylori J99]
Length = 447
Score = 29.6 bits (65), Expect = 0.25
Identities = 29/127 (22%), Positives = 50/127 (38%), Gaps = 4/127 (3%)
Query: 277 EMDVIYPLLLELYSDYKDGVLSKQDFIPIIYLIESYICRRAVCGL--GTNSLNKVFPSFT 334
E + P LLELYSD ++ + K ++ I+ + I ++ + GL L +
Sbjct: 113 EKGLTTPTLLELYSDLEEAIRLKCEYF-IMEVSSHAIVQKRIAGLDFALKILTNITSDHL 171
Query: 335 KHIQKDEYFKSLKAHFVCLTEKQRFPNNDEFKKLFITIDFYKFKKNKYFLERLENFDTKE 394
Q E ++ K F E + N DE LF I+ + +K ++ F
Sbjct: 172 DFHQNIENYRDAKNSFF-KDEGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLNP 230
Query: 395 PVDTQKC 401
+ C
Sbjct: 231 SISASLC 237
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 29.3 bits (64), Expect = 0.33
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 17/118 (14%)
Query: 462 KQSSLKLNQSLKDLESFGEKEIEKRASDLADWALKIWTYPILEAETLEEYKPKKEKKEKK 521
+++ L L + ++L+S KEI +D DW + + E+ P K K+ K
Sbjct: 728 REAKLNLLANFENLDSVPFKEITP--NDKGDWINQ-------RNDDFEKLIPLKRDKKSK 778
Query: 522 --------EKEEYKLKKEKKVYDLSSYKFSSDSRELFDILREKIKALDERITEKFNQK 571
K ++ VY+ S + D +K +ER E F Q+
Sbjct: 779 IFNAIFDLNSNGVKTSRDPWVYNFSQKTLMQSVQNCIDTYNADLKRFNERFREAFKQR 836
>ref|NP_222738.1| putative [Helicobacter pylori J99]
Length = 469
Score = 29.3 bits (64), Expect = 0.33
Identities = 19/75 (25%), Positives = 33/75 (43%), Gaps = 4/75 (5%)
Query: 128 FKGLKKLMIVWISLDKGKDDPQLIFESMNSKDIELTQTDLIRNYIVMETEVEKQEDFYNQ 187
FK + WI ++ GK+ + F+ D+ + D + N V ++EK E FY
Sbjct: 250 FKNPNRSHFTWIIIEDGKEPQKSEFKI----DVPIFMIDSVYNVSVALPKLEKGEAFYQN 305
Query: 188 YWRAMEERFEQNETL 202
+ E+ +TL
Sbjct: 306 FTLKDGEKVTPFDTL 320
>ref|NP_223614.1| putative [Helicobacter pylori J99]
Length = 230
Score = 28.9 bits (63), Expect = 0.43
Identities = 30/133 (22%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 432 HTIGNLTLTGYNSKYSNNSFQEKRDMEKGFKQSSLKLNQSLKDL---ESFGE-KEIEKRA 487
+++ NL + ++N++QE + EK Q++L+ + LK+ E++ E +EI+K
Sbjct: 93 YSLENLQTLRELKEEADNNYQESLNDEK--LQNNLREWRDLKNTPEEENYREFEEIKKMV 150
Query: 488 SDLADWALKIWTYPILEAETLEEYKPKKEKKEKKEKEEYKLK-----KEKKVYDLSSYKF 542
DW + + L E +++++ + + + +Y LK K K + +Y+
Sbjct: 151 LYFRDWCMFRLDWYKLRQEEIQKHRDLMDNDNRLLQLDYSLKNLSILKRFKEINEKNYQD 210
Query: 543 SSDSRELFDILRE 555
++ +L + LRE
Sbjct: 211 HLNNEKLQNDLRE 223
Score = 26.6 bits (57), Expect = 2.1
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 14/63 (22%)
Query: 503 LEAETLEEYKPKKEKKEKKEKEEYKLKKEKKV--------------YDLSSYKFSSDSRE 548
+ A T E+YK K E +E E + +K KK+ Y+LS K + R+
Sbjct: 21 VSAFTWEKYKAKNEDEEDDEANYREFEKIKKMALYFRDYCMFCLDWYELSQEKIQEEYRD 80
Query: 549 LFD 551
D
Sbjct: 81 CID 83
>ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 623
Score = 28.5 bits (62), Expect = 0.56
Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 41/203 (20%)
Query: 191 AMEERFEQNETL--FNRFVRHYLTIKIGKIPNEKRVYEAFKD--YRQKKGIEIEDLLKDL 246
A +RF +N L FN +Y K G+ +Y + + Q I +L +
Sbjct: 63 AYSKRFYKNLELVFFNHSAFYYNQFKTGE---SLFIYGKLEQSSFNQAYIINTPKILTEF 119
Query: 247 QKYCGYFCQIAFKKEDDKDLNKALSFLVNLEMDVIYP----LLLELYSDYKDGVLSKQDF 302
K F ++ K+ ++L K LS L NL+ + + LLLE+ F
Sbjct: 120 GKISLIFKKVKNHKKIQENLQKLLS-LENLKKEGVKENVARLLLEI-------------F 165
Query: 303 IPIIYLIESYICRRAVCGLGTNSLNKVFPS----FTKHIQKDEYFKSLKAHFVCLTEKQR 358
P + ++ + NK FPS K+I+ Y K+L+ + K
Sbjct: 166 FPTPHFVKDF------------ETNKNFPSQHLNALKYIEMLFYMKNLERKKLQFNAKIA 213
Query: 359 FPNNDEFKKLFITIDFYKFKKNK 381
PNN E K FI +K +++
Sbjct: 214 CPNNSERLKAFIASLPFKLTRDQ 236
>ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 358
Score = 28.5 bits (62), Expect = 0.56
Identities = 11/38 (28%), Positives = 24/38 (62%)
Query: 573 IAYKFCKISFVDIVVQEKGLKLYLKMNLNELQDEIKEK 610
+ + F ++FVD++++ + LKM E++DE K++
Sbjct: 193 LLFLFFVLAFVDLIIKRRQYTNSLKMTKQEVKDEYKQQ 230
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 28.5 bits (62), Expect = 0.56
Identities = 57/269 (21%), Positives = 105/269 (38%), Gaps = 46/269 (17%)
Query: 142 DKGKDDPQLIFESMNSKDIELTQTDLIRNYIVMETEVEKQEDFYNQYWRAMEE--RFEQN 199
+K K + + + K +E D ++N +TE EK+ R +++ + Q
Sbjct: 1070 EKEKQECEKLLTPEARKLLENQALDCLKN---AKTEAEKK--------RCVKDLPKDLQK 1118
Query: 200 ETLFNRFVRHYLTIKIGKIPNEKRVYEAFKDYRQKKGIEIEDLLKDLQKYCGYFCQIAFK 259
+ L V+ YL + + NEK E K + +E+ K ++ Y C K
Sbjct: 1119 KVLAKESVKAYLDC-VSRARNEKEKKECEKLLTPEARKLLEESKKSVKAYLD--CVSKAK 1175
Query: 260 KE-DDKDLNKALSFLVNLEMDVIYPLLLELYSDYKDGVLSKQDFIPIIYLIESYICRRAV 318
E + K+ K L+ P +L + K+ V + +D + RA
Sbjct: 1176 NEAEKKECEKLLT-----------PEARKLLEEAKESVKAYKDCVS-----------RAR 1213
Query: 319 CGLGTNSLNKVFPSFTKHIQKDEYFKSLKAHFVCLTEKQRFPNNDEFKKLFITIDFYKF- 377
K+ + + + E KS+KA+ C++ + E +KL +T + KF
Sbjct: 1214 NEKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKL-LTPEARKFL 1272
Query: 378 -----KKNKYFLERLENFDTKEPVDTQKC 401
+K+K + L+N D + KC
Sbjct: 1273 EKQRQQKDKAIKDCLKNADPNDRAAIMKC 1301
Score = 27.7 bits (60), Expect = 0.96
Identities = 32/144 (22%), Positives = 53/144 (36%), Gaps = 34/144 (23%)
Query: 44 NHLSEEVEILEKFSRKEIESYLINSNKDGDKKFRLILSESDKDTLLSLIDKNKRKPSEPS 103
NHL E F ++E + G++ SES +L + K RK +
Sbjct: 46 NHLDNPTETKTHFDEDKLEETQTQMDSGGNET-----SESSNGSLADKLFKKARKLVDDK 100
Query: 104 VKIVENFELFEKWISENTDKLETIFKGLKKLMIVWISLDKGKDDPQLIFESMNSKDIELT 163
+ +K + E T KL +DD + N++ E T
Sbjct: 101 RPFTQ-----QKSLDEETQKLNE------------------EDDQE------NNEHQEET 131
Query: 164 QTDLIRNYIVMETEVEKQEDFYNQ 187
QTDLI + +T+ + +D N+
Sbjct: 132 QTDLIDDETSEKTQQDSPQDLSNE 155
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 28.5 bits (62), Expect = 0.56
Identities = 50/238 (21%), Positives = 99/238 (41%), Gaps = 28/238 (11%)
Query: 360 PNNDEFKKLFITIDFYKFKKNKYFLERLENFDTKEPVDTQKCNIEHI-MPQTLTPEWQRD 418
PN++ ++++ T F + + L FD K + CN+ + + +T
Sbjct: 120 PNDELYEQIRATNTDINFISSDLLVTFLNGFDPKIANLRKACNVYSVGVIYIVTTNTLNI 179
Query: 419 LG-ENFQAIHEKYLHTIGNLTLTG------------------YNSKYSNNSFQEKRDMEK 459
L E+F+ + ++ L T G +T T ++ S N F + K
Sbjct: 180 LSCESFEILEKRELDTSG-VTKTSTPFFSRVEGIDAGTLGKLFSGSQSKNYFAYYDALVK 238
Query: 460 GFKQSSLKLNQSLKDLESFGEK-EIEKRASDLADWALK-IWTYPILEAETLEEYKPK--- 514
K+ +++ + + +++ K EI++ A A + P LE + ++ + K
Sbjct: 239 KEKRKEVRIEKKEERIDARENKREIKQEAIKEPKKANQGTENAPTLEEKNYQKAERKFDA 298
Query: 515 KEKKEKKEKEEYKLKKEKKVYDLSSYKFSSDSRELFDILREKIKALD-ERITEKFNQK 571
KE++ + E K K KK + + D R+ + E+ KAL+ ++ EK N K
Sbjct: 299 KEERRRSRDERKKTKATKKAMEFEEREKEHDERDEKE-TEERRKALEMDKGNEKVNAK 355
Score = 27.3 bits (59), Expect = 1.3
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 14/112 (12%)
Query: 456 DMEKGFKQSSLKLNQSLKDLESFGEKEIEKRASDLADWALKIWTYPILEAETLEEYKPKK 515
+M+KG ++ + K N+ + ES E E A+ L D L+E KK
Sbjct: 344 EMDKGNEKVNAKENEREINQESANEPSSENNAT-LKDTE---------NTSVLKESAAKK 393
Query: 516 EKKEKKEKEEYKLKKEKKVYDLSSYKFSSDSRELFDILREKIKALDERITEK 567
E + KEE + KE+K K +RE RE + ++ + E+
Sbjct: 394 EAPKPSSKEEKRRLKEEK----KKAKAEQRAREFEQRAREHQERDEKELEER 441
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 28.5 bits (62), Expect = 0.56
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 8/122 (6%)
Query: 452 QEKRDMEKGFKQSSLKLNQSLKDLESFGEKEIEKRASDLADWALKIWTYPILEAETLEEY 511
QEK++ K S +KL Q + E +K K +L K I E
Sbjct: 131 QEKKEANK----SGIKLEQERQKTEQERQKT-NKSEIELEQERQKTNKSGI---ELANSQ 182
Query: 512 KPKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSSDSRELFDILREKIKALDERITEKFNQK 571
+++++K E+E+ K K + + K + R+L ++ IK ++ EK Q
Sbjct: 183 IKAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQEKHGQL 242
Query: 572 YI 573
+I
Sbjct: 243 FI 244
>ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pylori J99]
Length = 552
Score = 28.1 bits (61), Expect = 0.73
Identities = 14/43 (32%), Positives = 26/43 (59%), Gaps = 1/43 (2%)
Query: 516 EKKEKKEKEE-YKLKKEKKVYDLSSYKFSSDSRELFDILREKI 557
EK K + ++L+++K+ +L ++ S D L DIL+EK+
Sbjct: 510 EKSNNKVRASVHRLERKKEKEELQAFNTSDDKMTLGDILKEKL 552
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 28.1 bits (61), Expect = 0.73
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 504 EAETLEEYKPKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSSDSRELFDILRE 555
+ E +EE K +EKKE+K+ E K+ ++KK+ + K D +L + +E
Sbjct: 137 KVEKVEEKKVVEEKKEEKKVVEQKV-EQKKIEEKKPVKKEFDPNQLSFLPKE 187
Score = 26.9 bits (58), Expect = 1.6
Identities = 15/56 (26%), Positives = 30/56 (52%), Gaps = 2/56 (3%)
Query: 512 KPKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSSDSRELFDILREKIKALDERITEK 567
+PK + K + +K +K K KKV + K + +E ++ +K++ ++I EK
Sbjct: 116 EPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVVEQKVE--QKKIEEK 169
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 28.1 bits (61), Expect = 0.73
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 443 NSKYSNNSFQEKRDMEKGFKQSS-------LKLNQSLKDLESFGEKEIEK 485
N+K+SNN+ + ++ G KQ+S K ++L++L+ E ++ K
Sbjct: 3 NAKFSNNTLKIIEELTNGVKQASEEIKAKATKYEKALQELQKIDESKLTK 52
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 27.7 bits (60), Expect = 0.96
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 15/82 (18%)
Query: 455 RDMEKGFKQSSLKLN---QSLKDLESFGEKEIEKRASDLADWALKIWTYPILEAETLEEY 511
++ ++ K+S+ N Q L + SF E E E + +I+ Y +E E
Sbjct: 45 QETDERLKESNFNFNNPEQLLALIRSFLEPEEELK---------RIYFYV---SEPFTEV 92
Query: 512 KPKKEKKEKKEKEEYKLKKEKK 533
+P+ + +K+E EEYK K K+
Sbjct: 93 EPRIKSNKKEELEEYKEKNPKE 114
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 27.7 bits (60), Expect = 0.96
Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 18/145 (12%)
Query: 73 DKKFRLILSESDKDTLLSLIDKNKRKPSEPSVKIVENFELFEKWISENTDKLETIFKGLK 132
+++ + + D D S+ D K SE + E ++ + + +K++ FK L
Sbjct: 227 ERRVKELFRSFDDDDENSVSDPKKDDDSEEDEENEERKKVVSEKDKKRVEKVQESFKALD 286
Query: 133 KLMIVWIS-----LDKGKDD----PQLIFESMNSKD--IELTQTDLIRNYIV--METEVE 179
K W+ +D+ +D+ L ++ KD +L T + N +V MET ++
Sbjct: 287 KAKKEWLKALEAPIDEKEDELVRSLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLK 346
Query: 180 KQEDFYNQYWRAMEERFEQNETLFN 204
+ F + +R E LFN
Sbjct: 347 SGDGFEKEL-----KRLEYKLPLFN 366
Score = 25.8 bits (55), Expect = 3.6
Identities = 45/182 (24%), Positives = 74/182 (39%), Gaps = 27/182 (14%)
Query: 443 NSKYSNNSFQEKRDMEKGFKQSSLKLNQS----LKDLESFGEKEIEKRASDLADWALKIW 498
N + NN +E + E K+S +K +K L SF E E A+ L+D
Sbjct: 32 NKENKNNKAKEGKIKEAKTKESKVKETAKEPIPVKKL-SFNEALEELFANSLSDCVSYES 90
Query: 499 TYPI-LEAETLEEYKPKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSSDSRELFDILREKI 557
I + TL + K KE +K +K K+ S Y ++ + EK
Sbjct: 91 IIQISAKVPTLAQIKKIKELCQKYQK---------KLVSSSEYAKKLNAIDKIKNTEEKQ 141
Query: 558 KALDERITEKFNQKYIAYKFCK-ISFVDIVVQEKGLKLYLK----MNLNELQDEIKEKLK 612
K LDE + + Y F K F++ + +++YL+ + L +EI+ +
Sbjct: 142 KVLDEELED-------GYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLLSKDEEIELSKQ 194
Query: 613 IR 614
IR
Sbjct: 195 IR 196
>ref|NP_223778.1| ATP synthase F1, subunit gamma [Helicobacter pylori J99]
Length = 301
Score = 27.3 bits (59), Expect = 1.3
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 44 NHLSEEVEILEKFSRKEIESYLINSNKDGDKKFRLILSESDKDTLLSLIDKNKRKPSEPS 103
N + + + ++ K+I+ L K G++ F + ++DK S P+
Sbjct: 102 NTIKKVLACTNEYKEKDIKVRLRGIGKKGNEYFSF--------NGIEVLDKINNLSSMPN 153
Query: 104 VKIVENF--ELFEKWISENTDKLETIFKGLKKLM 135
+ + F ++ E ++S TDK+ I G K ++
Sbjct: 154 YERAQEFMKKVVEDYLSGKTDKVIIIHNGFKNMI 187
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 27.3 bits (59), Expect = 1.3
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 29/204 (14%)
Query: 53 LEKFSRKEIESYLINSNKDGDKK-----FRLILSE--SDKDTLLSLIDKNKRKPSEPS-- 103
L FS+KE+E+ N +KD +K F L + + S D +LS I +N + +
Sbjct: 414 LAMFSKKELENDESNDDKDNKEKEQNAQFNLKIDDVLSLNDLVLSTIKRNAPSAYKEADF 473
Query: 104 VKIVENFELFEKWISENTDKLETIFKGLKKLMIVWISLDKGKDDPQLIFESMNSKDIELT 163
VK++EN + S L T+ K +IS+ +D +I + K + +
Sbjct: 474 VKLLENKGIGRP--STYASYLPTLVKR------EYISI--SQDKKHIITPTHKGKRV-VE 522
Query: 164 QTDLIRNYIVMETEVEKQEDFYNQYWRAMEERFEQNETLFNRFVRHYLTIKIGKIPNEKR 223
+ +I+ T ++ E+ ++ +N++ + F+ + L K KI +R
Sbjct: 523 VFENAYQFIIDLTYTKQMEEVLDE--------IVENKSSYVDFISN-LNSKCPKIEKLER 573
Query: 224 VYEAFKDYRQKKGIEIEDLLKDLQ 247
+ K + + IE++L+DLQ
Sbjct: 574 NDDEIKPSSEGQITYIENILRDLQ 597
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 27.3 bits (59), Expect = 1.3
Identities = 18/68 (26%), Positives = 34/68 (49%), Gaps = 2/68 (2%)
Query: 504 EAETLEEYKPKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSSDSRELFDILREKIKALDER 563
E ET EE + KE E +E+E K + ++ + S S + + ++E +K + E
Sbjct: 231 ELETQEELETPKE--ETQEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQEN 288
Query: 564 ITEKFNQK 571
++ N+K
Sbjct: 289 SNDQENKK 296
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 27.3 bits (59), Expect = 1.3
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 16/103 (15%)
Query: 452 QEKRDMEKGF-KQSSLKLNQSLKDLESFGEKEIEKRASDLADWALKIWTYPILEAETLEE 510
Q ++D + F K+SS +L E + + ++ D P+ A TL+E
Sbjct: 186 QAEKDTKAAFQKRSSGELESHTDSPEFISSSKTQNSSNPDLD--------PMTNANTLKE 237
Query: 511 Y-------KPKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSSDS 546
KKEKK KK++ K +K+++ K SDS
Sbjct: 238 TASKEPETSSKKEKKPKKKRRLSKKEKQQQALQQEFEKQISDS 280
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 26.6 bits (57), Expect = 2.1
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 8/131 (6%)
Query: 508 LEEYKPKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSSDSRELFDILREKIKALD--ERIT 565
L+ K + + EK+EK ++K + +DL+ +EL D + K KALD +
Sbjct: 234 LDNIKLQLQDLEKEEKALEQIKSPQDEWDLNKALQKEYLQELKD--KNKAKALDIQNNHS 291
Query: 566 EKFNQKYIAYKFCKISFVDIVVQEKGLKLYLKMNLNELQDEIKEKLKIRDVSNIGRPCVG 625
QK +K + D EK L ++ + + + E LK + +G
Sbjct: 292 TPLKQKISKFKIALFNHKDTSDDEKE---SLSIDRIDKRKPVSEHLKNMSKHEL-YELLG 347
Query: 626 NMEVELETKEN 636
+ EL+ K+N
Sbjct: 348 FYQKELDKKQN 358
Score = 25.8 bits (55), Expect = 3.6
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 41 ALRNHLSEEVEILEKFSRKEIESYLINSNKDGDKKFRLIL-----SESDKDTLLSLIDKN 95
AL+ +E++ K +I++ K KF++ L + D+ LS+ +
Sbjct: 266 ALQKEYLQELKDKNKAKALDIQNNHSTPLKQKISKFKIALFNHKDTSDDEKESLSIDRID 325
Query: 96 KRKPSEPSVKIVENFELFE 114
KRKP +K + EL+E
Sbjct: 326 KRKPVSEHLKNMSKHELYE 344
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 26.6 bits (57), Expect = 2.1
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 453 EKRDMEKGFKQSSLKLNQSLKDLESFGEKEIEKRASDLADWALKIWTYPILEAETLEEYK 512
++ D+E+ F +S ++ L ++ K+ DL +K + I E YK
Sbjct: 236 KESDVEEVFNESVEIYDECLIEIAQNVLKDKFSYDIDLLQVLVKGYAKEIRE---FLSYK 292
Query: 513 PKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSSDSRELF-DILREK 556
P KE K+ K+K+ K YD FS ++ F +IL K
Sbjct: 293 PIKEIKDFKDKDTALYISLGKDYDKEKEPFSKKLQQCFKEILESK 337
Score = 25.4 bits (54), Expect = 4.8
Identities = 52/266 (19%), Positives = 104/266 (38%), Gaps = 25/266 (9%)
Query: 363 DEFKKLFITIDFYK--FKKNKYFLERLENFDTKEPVDTQKCNIEHIMPQTLTPEWQRDLG 420
DE KK I F K+ FL +F ++ I H+ + T E + L
Sbjct: 48 DEDKKKSFNIAFSPCVIKELNEFLLEFGSFKETRSTFIEEALIRHLKHRKNTQE--QKLL 105
Query: 421 ENFQAIHEKYLHTIGNLTLTGYNSK---YSNNSFQEKRDMEKGFKQSSLKLNQSLKDLES 477
+ + + K + + L + + Y + + K +E+ Q+SL L ++ +
Sbjct: 106 KQLERLQNKEKGIMKTMNLNEFFTHKIIYKDTPLKFKDTLEQEISQASLVEKLILANILA 165
Query: 478 ---FGEKEIEKRASDLADWALKIWTYPILEAETLEEYKPKKEKKEKKEKEEYKLKKEKKV 534
F + E L + ++ E+ ++KP E++ + + E +KE ++
Sbjct: 166 NMVFAKISNENAPKILISRLMCKFSPIDYESTIPSDFKPIDEEEYEDDLEWLNEEKEDRL 225
Query: 535 YDLSSYKFSSDSRELFDILREKIKALDERITEKFNQKYIAYKFCKISF-VDIVVQEKGLK 593
++ + ++ ++ E ++ DE + E IA K F DI + + +K
Sbjct: 226 FNYYLFLNGIKESDVEEVFNESVEIYDECLIE------IAQNVLKDKFSYDIDLLQVLVK 279
Query: 594 LYLKMNLNELQDEIKEKLKIRDVSNI 619
Y K EI+E L + + I
Sbjct: 280 GYAK--------EIREFLSYKPIKEI 297
>ref|NP_223539.1| IRON(III) DICITRATE TRANSPORT SYSTEM ATP-BINDING PROTEIN
[Helicobacter pylori J99]
Length = 255
Score = 26.6 bits (57), Expect = 2.1
Identities = 14/64 (21%), Positives = 29/64 (44%)
Query: 31 RLTTITLLLIALRNHLSEEVEILEKFSRKEIESYLINSNKDGDKKFRLILSESDKDTLLS 90
+ T + L + H+ E +LE+ + ++ IN G ++ L+ + T L
Sbjct: 102 KATHLNLFAMPKAKHIKEATSVLERLDLESLKDQGINDLSGGQRQMVLLARSLLQRTPLL 161
Query: 91 LIDK 94
L+D+
Sbjct: 162 LLDE 165
>ref|NP_223233.1| putative [Helicobacter pylori J99]
Length = 255
Score = 26.6 bits (57), Expect = 2.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 626 NMEVELETKENIPYCLGLIKQ 646
N + L + IPYC GLIKQ
Sbjct: 167 NAQNPLNQESKIPYCYGLIKQ 187
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 26.6 bits (57), Expect = 2.1
Identities = 80/357 (22%), Positives = 138/357 (38%), Gaps = 64/357 (17%)
Query: 218 IPNEKRV---------YEAFKDYRQKKGIEIEDLLKDLQKYCGYFCQIAFKKEDDKDLNK 268
IPN+K++ + K ++K +E LL + GY +F + +L+
Sbjct: 50 IPNQKKIPKSARQILMIDTIKAIAKEKKFILEGLLLFENSFLGYLESTSFLFDLFDELSS 109
Query: 269 ALSFLVNLEMDVIYPLLLELYSDYKDGVLSKQDFIPIIYLIESYICRRAVCGLGTNSLNK 328
A L L ++Y DY+ + + + +IY + Y+ + G + K
Sbjct: 110 ACIKLNELSFK-------DIYLDYEKHL----EVLEMIY--DRYVKKLEELGFYDKIMQK 156
Query: 329 VFPSFTKHIQKDEYFKSLKAH---FVCLTEKQRFPNNDEFKK--LFITIDFYKFKKNKYF 383
P+ K E+F S++ H F+ + E+Q E L+++ D Y K ++
Sbjct: 157 K-PTILKEFF--EHFSSIEWHLDGFMSVFERQCLLEVAELVPITLYLSCDKYNQKFLEFL 213
Query: 384 LERLE-------NFDTKEPVDTQKCNIEHIMP----------------QTLTPEWQRDLG 420
+LE +F T++ + +Q N + I P QT+ Q +
Sbjct: 214 NLKLETDCDYSIDFKTQK-ILSQTFNDQKIEPKLYANSSYLKQGALVLQTIEEYLQENND 272
Query: 421 ENFQAIHEKYLHTIGNLTLTGYNSKYSNNSFQEKRDMEKGFKQSSLKLNQSLKDLESFGE 480
N AI + L L N+ N +F M G K S + +K LE
Sbjct: 273 PNKMAIITPNADFLPFLKLLDRNN---NLNFA----MGLGAKNSPY-YTELVKILEDLQT 324
Query: 481 KEIEKRASDLADWALKIWTYPILEAETLEEYKPKKEKKEKKEKEEYKLKKEKKVYDL 537
+ S L D L+ T +LE ++ +E P KE + + + LK K Y L
Sbjct: 325 SDCNLSGSALLD--LENITLALLEQQSSKEKAPLKEAHSQIMHQYHLLKDTLKNYSL 379
>ref|NP_222801.1| putative [Helicobacter pylori J99]
Length = 450
Score = 26.6 bits (57), Expect = 2.1
Identities = 35/136 (25%), Positives = 56/136 (40%), Gaps = 30/136 (22%)
Query: 376 KFKKNKYFLERLENFDTKEPVDTQKCNIEHIMPQTLTPEWQRDLGENFQAIHEKYLHTIG 435
+F K +Y + E F E D QK I+ + P + LG N HE
Sbjct: 109 EFMKKRYESFK-EIFVGLEEFDKQK--IKELEPNVI-------LGANGIDRHE------- 151
Query: 436 NLTLTGYNSKYSNNSFQEKRDMEKGFKQSSLKLNQSLKDLESFGEKEIEKRASDLADWAL 495
N+ GY +S +F + + + F + +LKL + + +F K+IEKR
Sbjct: 152 NIIGHGYRKDWSTMNFAK---LSENFVEEALKLKPNNQVFLNFKVKKIEKRND------- 201
Query: 496 KIWTYPILEAETLEEY 511
TY ++ + E Y
Sbjct: 202 ---TYAVISEDAEEVY 214
>ref|NP_223715.1| putative [Helicobacter pylori J99]
Length = 174
Score = 26.2 bits (56), Expect = 2.8
Identities = 19/77 (24%), Positives = 34/77 (43%), Gaps = 5/77 (6%)
Query: 21 NTLLIIDGQQRLTTITLLLIALRNHLSEEVEILEKFSRKEIESYLINSNKDGDKKFRLIL 80
+TLL++ + L +N+L E +I +++ I L+ N + IL
Sbjct: 16 STLLLVG-----VLLALFFFYAKNNLLENTQIRMQYTADAIAKSLLELNNASSLEPLKIL 70
Query: 81 SESDKDTLLSLIDKNKR 97
E K+T L+D + R
Sbjct: 71 EERFKNTPFVLLDADNR 87
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 26.2 bits (56), Expect = 2.8
Identities = 23/70 (32%), Positives = 35/70 (49%), Gaps = 13/70 (18%)
Query: 462 KQSSLKLNQSLKDLESFGEKEIEKRASDLADWALKIWTYPILEAETLE-EYKPKKEKKEK 520
K S +K + L+ L E++I K S+ A+ E E L+ E K K EK+E
Sbjct: 80 KMSEIKSERELRSLNI--EEDIAKERSNQAN----------REIENLQNEIKHKSEKQEV 127
Query: 521 KEKEEYKLKK 530
+KE +L+K
Sbjct: 128 LKKEMLELEK 137
>ref|NP_222991.1| putative [Helicobacter pylori J99]
Length = 418
Score = 26.2 bits (56), Expect = 2.8
Identities = 23/61 (37%), Positives = 32/61 (51%), Gaps = 3/61 (4%)
Query: 459 KGFKQSSLKLNQSLKDLESFGEKEIEKRASDLADWALKIWTYPILEAETLE--EYKPKKE 516
K F+Q LKLN LK L +K+ E +A D +KI + L A LE EY+ K+
Sbjct: 354 KAFRQLQLKLNTPLKALVE-AQKDGEFKALDQFFNPIKIKSDKPLRASFLEIKEYEIKER 412
Query: 517 K 517
+
Sbjct: 413 E 413
>ref|NP_222820.1| CYSTEINE SYNTHASE [Helicobacter pylori J99]
Length = 305
Score = 26.2 bits (56), Expect = 2.8
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 21 NTLLIIDGQQRLTTITLLLIALRNHLSEEVEILEKFSRKE------IESYLINS----NK 70
+T II+ T I L L+A+++HL + +KFS ++ + + +IN+
Sbjct: 64 STTTIIEPTAGNTGIALALVAIKHHLKTIFVVPKKFSTEKQQIMRALGALVINTPTSEGI 123
Query: 71 DGDKKFRLILSESDKDTLLSLIDKNKRKPS 100
G K L+ES D+ L L +N P+
Sbjct: 124 SGAIKKSKELAESIPDSYLPLQFENPDNPA 153
>ref|NP_224134.1| putative [Helicobacter pylori J99]
Length = 479
Score = 25.8 bits (55), Expect = 3.6
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 442 YNSKYSNNSFQEKRDMEKGFKQSSLKLNQSLKDLESFGEKEIEKRA---SDLADWALKIW 498
++S+ N+ EK ++ + S + + +EK+A ++ ++A W
Sbjct: 185 HSSQDQENNLFVAPPTEKTLPNNTSSADASENNESNENRDNVEKQAIRDPNIKEFACGKW 244
Query: 499 TYPILEAETLEEYKPKKEKKEKKEKE 524
Y + E L+ Y+P K+ K+KE
Sbjct: 245 VY---DDENLQAYRPSILKRVDKDKE 267
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 25.8 bits (55), Expect = 3.6
Identities = 25/117 (21%), Positives = 47/117 (39%), Gaps = 30/117 (25%)
Query: 478 FGEKEIEKRASDLADWALKIWTYPILEAETLEEYKPKKEKKEKKEKEEYKLKKEKKVYDL 537
F E+R DL D + EE K +K +KE K K K+++ K Y
Sbjct: 182 FANNNTEQRLLDLIDIVI-------------EETKTQKLQKEIKSKVHQKMEQTNKEY-- 226
Query: 538 SSYKFSSDSRELFDILREKIKALDERI-TEKFNQKYIAYKFCKISFVDIVVQEKGLK 593
L+E++K + + + T+K + + + K+ + ++E+ K
Sbjct: 227 --------------FLKEQLKQIQKELGTDKQRDEDLNQYYQKLESIKPFLKEEAFK 269
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 25.8 bits (55), Expect = 3.6
Identities = 45/220 (20%), Positives = 90/220 (40%), Gaps = 50/220 (22%)
Query: 29 QQRLTTITLLLIALRNHLSEEVEILEKFSRKEIESYLINSNKDGDKKFRLILSESDKDTL 88
Q+ TI + N E +E L++ + E + + D + R+I +TL
Sbjct: 308 QESTDTIKKMKEDYTNKTDEALERLDEIIKTEQNNS--QTKLDTENLKRII------ETL 359
Query: 89 LSLIDKNKRKPSEPSVKIVENFELFEKWISENTDKLETIFKGLKKLMIVWISLDKGKDDP 148
S I N++K + S ++ NF+L N ++++ I +KK +
Sbjct: 360 RSKIKANQQKMIDKSKEMSRNFKL-----DSNKNEIDAIKDLIKKA------------NE 402
Query: 149 QLIFESMNSKDIELTQTDLIRNYIVMETEVEKQEDFYNQYWRAMEERFEQNETLFNRFVR 208
Q+ + KDIE ++++ Q W+ + F+ + +N +
Sbjct: 403 QITNHNETIKDIE-----------------KQKKSCKEQTWKFLINEFKSDIQEYN---K 442
Query: 209 HYLTIKIGKIPNEKRVYEAFKDYRQKKGIEIEDLLKDLQK 248
Y ++ G EK + E Q+K ++E+ +K+L+K
Sbjct: 443 KYCGLEKGINNLEKEISE-----NQEKVKKLENEIKELEK 477
>ref|NP_223590.1| putative [Helicobacter pylori J99]
Length = 274
Score = 25.8 bits (55), Expect = 3.6
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 176 TEVEKQEDFYNQYWRAMEERFEQNETLFNRFV-RHYLTIKIGKIPNEKRVYEAFKDYRQK 234
TE + ++D + W ++E ++ N+ + R+Y+ PN + +E K++R+K
Sbjct: 206 TENQAKKDKDPEVW--LKEEYKDNQQAIEEYKKRNYID------PNLRLEWENIKEFREK 257
Query: 235 KGIEIEDLLKDL 246
+ I + LK++
Sbjct: 258 REEAIIEKLKEV 269
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 25.8 bits (55), Expect = 3.6
Identities = 26/102 (25%), Positives = 44/102 (42%), Gaps = 16/102 (15%)
Query: 381 KYFLERLENFDTKEPVDTQKCNIEHIMPQTLTPEWQRDLGENFQAIHEKYLHTIGNLTLT 440
K FLE+L+N D P++T K I+ QT EN +K + + + +
Sbjct: 35 KLFLEQLKNQDPTAPMETDK-----IITQTAQLTQVEMQEEN-----KKTMQEVASAMKS 84
Query: 441 GYNSKYSNNSFQ-----EKRDMEKGFKQSSLKLNQSLKDLES 477
+ S FQ ++ KG SLK N +L+++ +
Sbjct: 85 NKETNESLKDFQGALKDTMENLNKGM-DDSLKANNALREVSA 125
>ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 465
Score = 25.8 bits (55), Expect = 3.6
Identities = 25/97 (25%), Positives = 42/97 (42%), Gaps = 4/97 (4%)
Query: 1 MNGHFIGSILYVLDSNTHSNNTLLIIDGQQRLTTITLLLIALRNHLSEEVEILEKFSRKE 60
+N +F IL + + + + L +++ T L L E+ KF
Sbjct: 336 INPNFKKEILECMQDDLNVSKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKF---- 391
Query: 61 IESYLINSNKDGDKKFRLILSESDKDTLLSLIDKNKR 97
IE L KD F+L +SES+K + + I++ KR
Sbjct: 392 IEELLGIGFKDPSAYFQLGVSESEKQEIENKIEERKR 428
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 25.8 bits (55), Expect = 3.6
Identities = 22/106 (20%), Positives = 48/106 (44%), Gaps = 8/106 (7%)
Query: 91 LIDKNKRKPSEPSVKI---VENFELFEKWISENTDKLETIFKGLKKLMIVW-ISLDKGKD 146
LI+K K E K+ +EN E+ + + + LE K + L W + ++K K+
Sbjct: 501 LIEKAKAFYGEDKEKLNVLIENSSTLERELKQKNEHLENALKEQEDLKNAWLLEMEKQKE 560
Query: 147 ---DPQLIFESMNSKDIELTQTDLI-RNYIVMETEVEKQEDFYNQY 188
+L E + + + ++++ ++ M E+ K + N++
Sbjct: 561 IFHHKKLELEKSYQQALNILKSEVASKDTSSMHKEIHKASEILNKH 606
Score = 25.0 bits (53), Expect = 6.2
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 502 ILEAETLE-EYKPKKEKKEKKEKEEYKLK--------KEKKVYDLSSYKFSSDSRELFDI 552
I + TLE E K K E E KE+ LK K+K+++ + ++ +I
Sbjct: 520 IENSSTLERELKQKNEHLENALKEQEDLKNAWLLEMEKQKEIFHHKKLELEKSYQQALNI 579
Query: 553 LREKIKALD 561
L+ ++ + D
Sbjct: 580 LKSEVASKD 588
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 25.8 bits (55), Expect = 3.6
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 453 EKRDMEKGFKQSSLKLNQSL-KDLESFGEKEI--EKRASDLADWALKIWTYPILEAETLE 509
+K E K+ +LK + L + F E + +++ +L D+ K+ +L+ E
Sbjct: 31 KKEQEEVAAKEDALKARKKLLNNTHDFLEDLVFRKQKIKELVDYRAKV----LLDLEN-- 84
Query: 510 EYKPKKEKKEKKEKEEYKLKKEKKVYDL 537
+YK +KE EK+ + + K K DL
Sbjct: 85 KYKKEKEALEKETRGKILTAKSKAYGDL 112
>ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori J99]
Length = 773
Score = 25.8 bits (55), Expect = 3.6
Identities = 14/54 (25%), Positives = 30/54 (54%)
Query: 9 ILYVLDSNTHSNNTLLIIDGQQRLTTITLLLIALRNHLSEEVEILEKFSRKEIE 62
++ +L H TLL ++ + L + LI ++ LS ++++LEK +++E
Sbjct: 571 LMNLLKVARHYRYTLLELEKRYNLLEVLRFLIETKDALSLDMKVLEKSILEKLE 624
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 25.8 bits (55), Expect = 3.6
Identities = 9/26 (34%), Positives = 20/26 (76%)
Query: 514 KKEKKEKKEKEEYKLKKEKKVYDLSS 539
K E KKE+E+ ++K+E+++ D+++
Sbjct: 133 KDEANHKKEREKREVKQEEEIKDINA 158
>ref|NP_222781.1| putative [Helicobacter pylori J99]
Length = 139
Score = 25.8 bits (55), Expect = 3.6
Identities = 37/143 (25%), Positives = 62/143 (42%), Gaps = 20/143 (13%)
Query: 341 EYFKSLKAHFVC-LTEKQRFPNNDEFKKLFITIDFYKFKKNKYFLERLENFDTKEPVDTQ 399
E+ +SL + + L E+ +D FK FI Y F + +YF+ E++ K ++
Sbjct: 13 EFVESLNENALSDLEERLEIGFSDAFKD-FIKRSNYGFSQLRYFMVGNESYMFKHVLNF- 70
Query: 400 KCNIEHIMPQTLTPEWQRDLGENFQAIHEKYLHTIGNLTLTGYNSKYSNNSFQEK---RD 456
N+E +L ++ + L E + + + GY Y N+ + D
Sbjct: 71 --NLE-----SLLIDFMQSLKEWLEPEEIVFAND-------GYGGYYLWNTTTDVVLFLD 116
Query: 457 MEKGFKQSSLKLNQSLKDLESFG 479
+ G K+ L LN LK LES G
Sbjct: 117 TDNGSKKVLLNLNMFLKKLESRG 139
>ref|NP_223988.1| putative [Helicobacter pylori J99]
Length = 290
Score = 25.4 bits (54), Expect = 4.8
Identities = 49/243 (20%), Positives = 94/243 (38%), Gaps = 34/243 (13%)
Query: 346 LKAH-FVCLTEKQRFPNNDEFKKLFITIDFYKFKKNKYFLERLENFDTKEPVDTQKCNIE 404
LK H F L++K + N D+ K+ + +D + K N Y+ QK +
Sbjct: 70 LKEHSFSPLSKKIPYYNKDKEKRESLELDQFAKKDNTYYFME------------QKMRDD 117
Query: 405 HIMPQTLTPEWQRDLGENFQAIHEKYLHTIGNLTLTGY------NSKYSNNSFQEKRDME 458
H + +R +NF+ E +H G + GY + N ++E+
Sbjct: 118 HDSAK------KRGQIDNFERKLEALIHRYGE-NIQGYFYFIDEGLNKNQNYYKEELQKL 170
Query: 459 KGFKQSSLKLNQSLKDLESFGEKEI-EKRASDLADWALKIWTYPIL--EAETLEEYKPKK 515
L L ES ++ ++ + LA W + P L + LE + +
Sbjct: 171 SADYGVPLSLRYGKGLFESLNIPQVWDEVLTHLARWRETLPDLPSLNFDENPLESF---R 227
Query: 516 EKKEKKEKEEYKLKKEKKVYDLSSYKFSSDS--RELFDILREKIKALDERITEKFNQKYI 573
E K+ KL ++++L F + L + R++ K + +++ K QK +
Sbjct: 228 EIKDLAPSVYRKLLDNDEIFNLVLILFPEQKVLKMLVEHFRQQNKTIYQQLASKLVQKLL 287
Query: 574 AYK 576
+ +
Sbjct: 288 SLR 290
>ref|NP_223550.1| putative [Helicobacter pylori J99]
Length = 95
Score = 25.4 bits (54), Expect = 4.8
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Query: 324 NSLNKVFPSFTKHIQKD--EYFKSLKAHFV--------CLTEKQRFPNNDEFKKLFITID 373
N+ NK +TK+ QK + S+KA T+KQR +FK L +T +
Sbjct: 3 NTTNK---DYTKYSQKQLFNFLNSIKAKQKRALEKLKEIQTQKQRIKKALQFKALHLTEN 59
Query: 374 FYKFKKNKYFLERLENFDTK 393
Y ++ + L R + DTK
Sbjct: 60 GYTIEEEREILARAK--DTK 77
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 25.4 bits (54), Expect = 4.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 506 ETLEEYKPKKEKKEKKEKEEYKLKKEK 532
ET + KPKK K++KKE +KK++
Sbjct: 99 ETKAQPKPKKTKEKKKEAPAPIIKKKE 125
>ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicobacter pylori J99]
Length = 745
Score = 25.4 bits (54), Expect = 4.8
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 70 KDGDKKFRLILSESDKDTLLSLIDKNKRKPSEPSVKIVENFELFEKWISENTDKLETIF 128
K GDK F L+ S+ L+ NK ++++ N + + IS DK+ ++F
Sbjct: 291 KVGDKVFSGTLN-SNTSFLMKATQDNKNSTLSQIIEMIHNAQSSKAEISRLADKVSSVF 348
>ref|NP_222877.1| putative [Helicobacter pylori J99]
Length = 243
Score = 25.4 bits (54), Expect = 4.8
Identities = 14/38 (36%), Positives = 17/38 (43%)
Query: 503 LEAETLEEYKPKKEKKEKKEKEEYKLKKEKKVYDLSSY 540
LEA+ + K+E KE KE Y K K D Y
Sbjct: 21 LEAKEEAKEPTKEEPKESKENSNYSEKMTVKKEDAEKY 58
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 25.0 bits (53), Expect = 6.2
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 512 KPKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSSDSRELFDILREKIKALDERITEK 567
K K + ++ K+KK +K ++S + ++ I E IK +DE + K
Sbjct: 123 KAKVAVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNK 178
>ref|NP_223737.1| UDP-GLUCOSE 4-EPIMERASE [Helicobacter pylori J99]
Length = 344
Score = 25.0 bits (53), Expect = 6.2
Identities = 18/68 (26%), Positives = 34/68 (49%), Gaps = 4/68 (5%)
Query: 45 HLSEEVEILEKFSRKEIESYLINSNKDGDKKFRLILSESDKDTLLSLIDKNKRKPSE--- 101
HL+ +LEK ++ EI + N + + S+KD L+ ++DK + P+
Sbjct: 250 HLASYHTLLEK-NKSEIYNVGYNQGHSVKEVIEKVKEISNKDFLVEILDKRQGDPASLIA 308
Query: 102 PSVKIVEN 109
+ KI++N
Sbjct: 309 NNSKILQN 316
>ref|NP_223159.1| putative [Helicobacter pylori J99]
Length = 181
Score = 25.0 bits (53), Expect = 6.2
Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 101 EPSVKIVEN--FELFEKWISEN---TDKLETIFKGLKKLMIVWISLDKGKDDPQLIFESM 155
+P VK + N + + + N T+++E KG+ +++ V +SLD F++
Sbjct: 16 QPEVKEITNELLKQLQNALHSNALFTEQVELSLKGIVRILEVLLSLD--------FFKNA 67
Query: 156 NSKDIELTQTD--LIRNYIVMETEVEKQEDFYNQYWRAMEERFEQNETLFNRFVRHYLTI 213
N D L + L ++T++++ E F++++ +M EQ T +
Sbjct: 68 NEIDSSLRNSIEWLSNAGESLKTKMKEYERFFSEFNTSMHAN-EQEVTATLNANTENIKS 126
Query: 214 KIGKIPN----------EKRVYEAFKDYRQKKGIEIEDLLK 244
+I K+ N E+ ++ K Y G + ++ LK
Sbjct: 127 EIKKLENQLIEETRMLLEQETQKSVKAYNAMMGHQPQNSLK 167
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 24.6 bits (52), Expect = 8.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 506 ETLEEYKPKKEKKEKKEKEEYKLKKEK 532
ET E KP+ E KEK +E + K EK
Sbjct: 614 ETYIELKPQNEWKEKLSYKEVRDKLEK 640
>ref|NP_223649.1| putative [Helicobacter pylori J99]
Length = 156
Score = 24.6 bits (52), Expect = 8.1
Identities = 11/38 (28%), Positives = 21/38 (54%)
Query: 359 FPNNDEFKKLFITIDFYKFKKNKYFLERLENFDTKEPV 396
FP+ ++ + ++ I+ K K NK E L+ + K P+
Sbjct: 117 FPSIEDKESVYALIEVMKPKLNKQERENLDKWIAKNPI 154
>ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 676
Score = 24.6 bits (52), Expect = 8.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 335 KHIQKDEYFKSLKAHFVCLTEKQRFPNNDEFKKL 368
KHI + +F++ K + K + + +EFKKL
Sbjct: 509 KHILESAFFQTFKTRLLKERSKNKDGSYNEFKKL 542
>ref|NP_223219.1| putative [Helicobacter pylori J99]
Length = 321
Score = 24.6 bits (52), Expect = 8.1
Identities = 22/83 (26%), Positives = 40/83 (47%), Gaps = 8/83 (9%)
Query: 448 NNSFQEKRDMEKGFKQSSLKLNQSLKDLESFGEKEIEKRASDLADWALK-IWTYPILEAE 506
NNSF E E+ + + KL + K+ + G++ I++ + + + IW +E
Sbjct: 191 NNSFNETNPTEEKKLEPTPKLEEKHKEQDKQGKEAIKENPNTIYIIPKRDIW----VEVI 246
Query: 507 TLEEYKPKKEKKEKKEKEEYKLK 529
L+E KK +K K+ Y L+
Sbjct: 247 DLDE---KKNSFQKVFKKSYPLE 266
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 24.6 bits (52), Expect = 8.1
Identities = 38/200 (19%), Positives = 84/200 (42%), Gaps = 20/200 (10%)
Query: 421 ENFQAIHEKYLHTIGNLTLTGYNSKYS-----NNSFQEKRDMEKG--FKQSSLKLNQSLK 473
+N I + TI +T TG+N +S N+ F + + ++ F++ ++ +
Sbjct: 62 DNVTVIQLEKDETISYIT-TGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120
Query: 474 DLESFGEKEIEKRASDLADWALKIWTYPILEAETLEEYKPKKEKKEKKEK-EEYKLKKEK 532
D + F + +K D D LE E + + +K +K+K+EK +E + K
Sbjct: 121 DYQEF--LKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRA 178
Query: 533 KVYDLSSYKFSSDSRELFDILREKIKALDERITEKFNQKYIAYKFCKISFVDIVVQEKGL 592
+ +L++ + + L E IK E ++ ++ + Q L
Sbjct: 179 NLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQME---------RLEDMQEQAQANAL 229
Query: 593 KLYLKMNLNELQDEIKEKLK 612
K ++N + ++ ++++ K
Sbjct: 230 KQIEELNKKQAEEAVRQRAK 249
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 24.6 bits (52), Expect = 8.1
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 421 ENFQAIHEKYLHTIGNLTLTGYNSKYSNNSFQEKRDMEKGFKQSSLKLNQSLKDLESFGE 480
E F + + T G L + +SK S SF +KG + + + N + + +++
Sbjct: 446 ERFNNEVDVEIETNGRLRIIDNSSKESPISFALSTLDQKGLEVAGIPTNNASEYQKTYFN 505
Query: 481 KEIEKRASDLADWA 494
KE K S++A A
Sbjct: 506 KEGAKLESNVAQTA 519
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.137 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 766,700
Number of Sequences: 1491
Number of extensions: 40640
Number of successful extensions: 336
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 128
length of query: 658
length of database: 494,079
effective HSP length: 84
effective length of query: 574
effective length of database: 368,835
effective search space: 211711290
effective search space used: 211711290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)