BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645141|ref|NP_207311.1| ribosomal protein L9 (rpl9)
[Helicobacter pylori 26695]
(150 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223181.1| 50S RIBOSOMAL PROTEIN L9 [Helicobacter pyl... 286 2e-79
ref|NP_223199.1| cag island protein [Helicobacter pylori J99] 31 0.017
ref|NP_223252.1| putative [Helicobacter pylori J99] 27 0.24
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 27 0.31
ref|NP_223180.1| putative [Helicobacter pylori J99] 26 0.41
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 25 0.70
ref|NP_223610.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_223062.1| multi-drug resistance protein [Helicobacte... 25 1.2
ref|NP_224117.1| Sodium/Glutamate Symporter [Helicobacter p... 24 1.6
ref|NP_223664.1| putative [Helicobacter pylori J99] 24 1.6
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 24 2.0
ref|NP_222870.1| putative [Helicobacter pylori J99] 23 2.7
ref|NP_223847.1| abc transporter, ATP-binding protein [Heli... 23 3.5
ref|NP_223788.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 23 3.5
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 23 3.5
ref|NP_222839.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter py... 23 4.5
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 23 4.5
ref|NP_223457.1| putative [Helicobacter pylori J99] 23 4.5
ref|NP_223727.1| BIOTIN CARBOXYL CARRIER PROTEIN [Helicobac... 22 7.7
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 22 7.7
>ref|NP_223181.1| 50S RIBOSOMAL PROTEIN L9 [Helicobacter pylori J99]
Length = 149
Score = 286 bits (731), Expect = 2e-79
Identities = 147/149 (98%), Positives = 148/149 (98%)
Query: 2 MKVLLLEDVKNLGKAGEVCEVKDGYGNNFLIANQKAKLATNEVINKYKAEVKKKAEKEAL 61
MKVLLLEDVKNLGKAGEVCEVKDGYGNNFLIANQKAKLATNEVINKYKAEVKKKAEKEAL
Sbjct: 1 MKVLLLEDVKNLGKAGEVCEVKDGYGNNFLIANQKAKLATNEVINKYKAEVKKKAEKEAL 60
Query: 62 EKAQKLQMVETLQTITLTIHKKVGANGSLFGAITKEEITERLKEQHASLNLDKKDIELKH 121
EKAQKLQMVETLQTITLTIHKKVGANGSLFGAITKEEITERLKEQHASLNLDKKDIELKH
Sbjct: 61 EKAQKLQMVETLQTITLTIHKKVGANGSLFGAITKEEITERLKEQHASLNLDKKDIELKH 120
Query: 122 PIKSTGIYEIEVKLGSGVVGVFKIDVVAE 150
PIKSTGIYEIEVKLGSG+ GVFKIDVVAE
Sbjct: 121 PIKSTGIYEIEVKLGSGIAGVFKIDVVAE 149
>ref|NP_223199.1| cag island protein [Helicobacter pylori J99]
Length = 280
Score = 30.8 bits (68), Expect = 0.017
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 32 IANQKAKLATNEVINKY-KAEVKKKAEKEALEKAQKLQMVETL------QTITLTIHKKV 84
+A +KA+L E IN+Y K ++ K ++ K + +++ETL Q I ++
Sbjct: 185 VAREKAQL---EKINQYYKTLLQDKEQEYTTRKNNQREILETLSNRAGYQMRQNVISSEI 241
Query: 85 GANGSLFGAITKEEITERLKEQ 106
NG+L +EE+ E+L+E+
Sbjct: 242 FKNGNLNMQAKEEEVREKLQEE 263
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 26.9 bits (58), Expect = 0.24
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 76 ITLTIHKKVGANG---SLFGAITKEEITERLKEQHASLNL--DKKDIELKH 121
I L I++ G++ SLFG+I K+EI+ + S+ + D+KDI L +
Sbjct: 609 INLPIYRSDGSHFDSFSLFGSINKDEISVYTPSKSISIKVKGDQKDITLNN 659
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 26.6 bits (57), Expect = 0.31
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 33 ANQKAKLATNEVINKYKA-EVKKKAEKEALEKAQKLQMVETLQTITLTIHKKVGANGSLF 91
A K + +N++ N EV + +K + +AQK ++ET+ +T I++ NG+L
Sbjct: 1242 ATLKEMIESNQLDNITNINEVLQLLDKIKITQAQKQALLETINHLTDNINQTFN-NGNLV 1300
Query: 92 GAITKEEIT 100
T++ +T
Sbjct: 1301 IGATQDNVT 1309
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 26.2 bits (56), Expect = 0.41
Identities = 19/69 (27%), Positives = 36/69 (51%), Gaps = 3/69 (4%)
Query: 43 EVINKYKAEVKKKAEKEALEKAQKLQMVETLQTITLTIHKKVGANGSLFGAITKE--EIT 100
E + +YK + +KK +KE EK ++ ++ + + L+ +K + LF + KE +
Sbjct: 551 ETLEEYKPKKEKKEKKEKKEK-EEYKLKKEKKVYDLSSYKFSPHSRELFDILRKEIKTLD 609
Query: 101 ERLKEQHAS 109
ER+ E S
Sbjct: 610 ERVTENFNS 618
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 25.4 bits (54), Expect = 0.70
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 50 AEVKKKAEKEALEKAQKLQMVETLQTITLTIHKKVGANGSLFG-AITKEEIT 100
A++K ++++ ++AQK + T + L K G NG+L G ++K E T
Sbjct: 812 ADLKNFSKEQLAQQAQKNEDFNTGKNSALYQSVKNGVNGTLVGNGLSKAEAT 863
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 24.6 bits (52), Expect = 1.2
Identities = 12/38 (31%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Query: 32 IANQKAKLATNEVINKYKAEVKKKAEKEALEKAQKLQM 69
IA +++ A E+ N + E+K K+EK+ + K + L++
Sbjct: 99 IAKERSNQANREIEN-LQNEIKHKSEKQEVLKKEMLEL 135
>ref|NP_223062.1| multi-drug resistance protein [Helicobacter pylori J99]
Length = 551
Score = 24.6 bits (52), Expect = 1.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 48 YKAEVKKKAEKEALEKAQKLQMVETLQTITLTIHKKVGAN 87
Y E+ + KE L+KAQ L VE + ++ + GAN
Sbjct: 433 YGLEIDEIKIKECLKKAQALDFVEKMPHGIESVLDEFGAN 472
>ref|NP_224117.1| Sodium/Glutamate Symporter [Helicobacter pylori J99]
Length = 408
Score = 24.3 bits (51), Expect = 1.6
Identities = 18/51 (35%), Positives = 24/51 (46%), Gaps = 14/51 (27%)
Query: 44 VINKYKAEVKKKAEKEALE----------KAQKL----QMVETLQTITLTI 80
+I+KYK E K EK+ LE K Q+L VETL I + +
Sbjct: 186 LISKYKLEPKDTKEKDTLEGVVSKGFETPKEQRLITASSFVETLALIAIAL 236
>ref|NP_223664.1| putative [Helicobacter pylori J99]
Length = 466
Score = 24.3 bits (51), Expect = 1.6
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 32 IANQKAKLATNEVINKYKAEVKKKAEKEALEKAQKLQMVETLQTITLTIHKKVGANGSLF 91
IA +K + A +V N YK ++ + + ALE AQ L + +T+ L + + A
Sbjct: 337 IAGKKGEAAA-KVFNDYKHRFQQLSVETALEIAQNLSFMN--KTLGLMVQMQSYAFKQQM 393
Query: 92 GAITKEEITERLK-EQHASLNLDKKDIELK 120
G + LK ++ NL++K E++
Sbjct: 394 GYFEDIIPADALKDDKEHQENLEQKQQEIE 423
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 23.9 bits (50), Expect = 2.0
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 90 LFGAITKEEITERLKEQHASLNLDKKDIELKHPIKSTGIYEIEVKLGSGV 139
L+ IT +T +L ++A+ + K ST +Y++ K+G +
Sbjct: 526 LWDMITYNGVTGQLLNENAATSKPTDSSPSKSSTNSTQVYQVGYKIGDTI 575
>ref|NP_222870.1| putative [Helicobacter pylori J99]
Length = 240
Score = 23.5 bits (49), Expect = 2.7
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 72 TLQTITLTIHKKVGA----NGSLFGAITKEEITERLKEQHASLNLDKKDIELKHPIKSTG 127
T+ + +K GA NGSL ++ + E LK + +L L +D+E + G
Sbjct: 105 TIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKSEVENLKLSLEDLEF--ALIDYG 162
Query: 128 IYEIE 132
+ E+E
Sbjct: 163 LEELE 167
>ref|NP_223847.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 578
Score = 23.1 bits (48), Expect = 3.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 44 VINKYKAEVKKKAEKEALEKAQKLQM 69
++ K +KKK E A KAQ L++
Sbjct: 206 IVKKVTVLIKKKGEMAAKSKAQTLKV 231
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 23.1 bits (48), Expect = 3.5
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 17/89 (19%)
Query: 35 QKAKLATNEVINKYKAEVKKK------AEKEALEKA----------QKLQMVETLQTITL 78
++ K NE ++ KAE +KK E+E +EKA Q+ + +E L+
Sbjct: 139 ERLKRENNEAESRLKAENEKKLNEKLELEREKIEKALHEKNELKFKQQEEQLEMLRNELK 198
Query: 79 TIHKKVGANGSLF-GAITKEEITERLKEQ 106
+K + F G + + I E L+++
Sbjct: 199 NAQRKAELSSQQFQGEVQELAIEEFLRQK 227
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter
pylori J99]
Length = 511
Score = 23.1 bits (48), Expect = 3.5
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 42 NEVINKYKAEVKKKAEKEALEKAQKLQMVETLQTITLTIHKKVGAN 87
N +I ++ E+E EKA++L ++ LQ++ + ++K+ N
Sbjct: 42 NNLIPAKSDSLESFKEQENKEKAKQLMDLKALQSVYFSKNRKLQDN 87
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 23.1 bits (48), Expect = 3.5
Identities = 16/46 (34%), Positives = 21/46 (44%)
Query: 59 EALEKAQKLQMVETLQTITLTIHKKVGANGSLFGAITKEEITERLK 104
EAL+ AQ V+TL T I KK + L+ + E E K
Sbjct: 13 EALKIAQSHHGVDTLVFKTQEIRKKTLTSSGLYEIVVAVEEEENKK 58
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 23.1 bits (48), Expect = 3.5
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 34 NQKAKLATNEVINKYKAEVKKKAEKEALEKAQKLQMVETLQTITLTIHKK 83
N++ + E KYKA+ KK +K +Q+ + + + + +KK
Sbjct: 52 NKRLEAMKEEERQKYKADFKKAMDKNLASLSQEDRNKRKKEILEVIANKK 101
>ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 920
Score = 22.7 bits (47), Expect = 4.5
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 60 ALEKAQKLQMVETLQTITLTIHKKVGANGSLFGAITKEEITERLKEQHASLNLDKKD 116
AL+K + + + +H+K+ A G + AIT E + L+ A+ L+++D
Sbjct: 249 ALKKDAVYALTQKGYLVAKALHEKLAALGVVDNAITHEFNSNDLEYLVATNPLNQRD 305
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 22.7 bits (47), Expect = 4.5
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 35 QKAKLATNEVINKYKAEVKKKAEKEALEKAQKLQMVETLQTITLTIHKKV 84
+KAK+A +VKK + + + + + + E +Q IT KK+
Sbjct: 122 EKAKVAVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKI 171
>ref|NP_223457.1| putative [Helicobacter pylori J99]
Length = 279
Score = 22.7 bits (47), Expect = 4.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 2 MKVLLLEDVKNLGKAGEVCEVKDGYGNNFLIAN 34
+K+LL +K K VC V G G +FL AN
Sbjct: 16 LKILLKIFLKTFQKIWIVCVVIWGLGCSFLNAN 48
>ref|NP_223727.1| BIOTIN CARBOXYL CARRIER PROTEIN [Helicobacter pylori J99]
Length = 161
Score = 21.9 bits (45), Expect = 7.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 102 RLKEQHASLNLDKKDIELKH 121
+LK +H L LDK+ KH
Sbjct: 22 KLKHEHFELVLDKESAYTKH 41
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 21.9 bits (45), Expect = 7.7
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 38 KLATNEVINKYKAEVKKKAEKEALEKAQKLQMVETLQTITLTIHKKVGANGSLFGAITKE 97
K+ E I K + + +KAEK+ EKA Q I++ KKV L +
Sbjct: 517 KIEKIEKIEKGEEALAEKAEKKEKEKAPPTQE----NYISIEDFKKVEIKVGLIKEAQRI 572
Query: 98 EITERLKEQHASLNLDKKDIELKHPIKSTGI-YEIEVKLGSGV 139
E + +L L +D + L+ I + YE E +G V
Sbjct: 573 EKSNKL----LRLKVDLGENRLRQIISGIALDYEPESLVGQMV 611
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.311 0.132 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,144
Number of Sequences: 1491
Number of extensions: 7013
Number of successful extensions: 32
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 22
length of query: 150
length of database: 494,079
effective HSP length: 70
effective length of query: 80
effective length of database: 389,709
effective search space: 31176720
effective search space used: 31176720
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)