BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644683|ref|NP_206853.1| hypothetical protein
[Helicobacter pylori 26695]
(330 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222766.1| putative TYPE II DNA MODIFICATION ENZYME (... 176 6e-46
ref|NP_222926.1| putative [Helicobacter pylori J99] 25 2.1
ref|NP_223719.1| ALPHA-(1,3)-FUCOSYLTRANSFERASE [Helicobact... 25 2.8
ref|NP_223314.1| ALPHA (1,3)-FUCOSYLTRANSFERASE [Helicobact... 25 2.8
ref|NP_224067.1| conserved lipoprotein [Helicobacter pylori... 24 6.2
ref|NP_222912.1| putative [Helicobacter pylori J99] 23 8.1
>ref|NP_222766.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 185
Score = 176 bits (447), Expect = 6e-46
Identities = 85/100 (85%), Positives = 91/100 (91%)
Query: 1 MLLSRFQIKNGCIYGVCSYKASKSVYGYEESKAQVLNALNTLSVHPIWQSNQESVTKIKG 60
+LLSRFQIKNGCIYGVCSYK SK GYEESKA+VLNALN LS H IWQSNQESVTK+KG
Sbjct: 17 VLLSRFQIKNGCIYGVCSYKVSKFTPGYEESKARVLNALNILSKHQIWQSNQESVTKVKG 76
Query: 61 TFVFILENDLHLDENSFYKKLLNSLIDNDFFNRSHSMTPN 100
TFVFILENDLHLDENSFYKKLLN +IDNDFFNRSH +TP+
Sbjct: 77 TFVFILENDLHLDENSFYKKLLNLIIDNDFFNRSHLVTPS 116
>ref|NP_222926.1| putative [Helicobacter pylori J99]
Length = 161
Score = 25.4 bits (54), Expect = 2.1
Identities = 14/48 (29%), Positives = 25/48 (51%), Gaps = 2/48 (4%)
Query: 141 IDFFNIPSEALNFNFRELQP--EYAQGINQRNAQFRIYLDWYLHHIGL 186
+ ++ P EA N F+ + E A I Q + + R+Y+ YL H+ +
Sbjct: 37 LSVYSTPQEASNKLFKGISQGMELAPEIAQEDEEKRLYVLQYLSHVDI 84
>ref|NP_223719.1| ALPHA-(1,3)-FUCOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 436
Score = 25.0 bits (53), Expect = 2.8
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 37 NALNTLSVHPIWQSNQESVTKIKGTFVFILENDLHLDENS--FYKKLLNSLIDND 89
N LNTL + N S KI F ILEND +N FY+ L L+ D
Sbjct: 311 NPLNTLDGKAYFYQNL-SFKKILDFFKTILENDTIYHDNPFIFYRDLNEPLVAID 364
>ref|NP_223314.1| ALPHA (1,3)-FUCOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 454
Score = 25.0 bits (53), Expect = 2.8
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 37 NALNTLSVHPIWQSNQESVTKIKGTFVFILENDLHLDENS--FYKKLLNSLIDND 89
N LNTL + N S KI F ILEND +N FY+ L L+ D
Sbjct: 311 NPLNTLDGKAYFYQNL-SFKKILDFFKTILENDTIYHDNPFIFYRDLNEPLVAID 364
>ref|NP_224067.1| conserved lipoprotein [Helicobacter pylori J99]
Length = 175
Score = 23.9 bits (50), Expect = 6.2
Identities = 8/18 (44%), Positives = 15/18 (82%)
Query: 241 LDDKSIEKLREQLGFIQK 258
LD + ++K+RE+LG ++K
Sbjct: 158 LDKQIVDKVREELGMVKK 175
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 23.5 bits (49), Expect = 8.1
Identities = 13/36 (36%), Positives = 18/36 (49%)
Query: 51 NQESVTKIKGTFVFILENDLHLDENSFYKKLLNSLI 86
N S KG+F ILE ++ L +S K N L+
Sbjct: 527 NDTSFLFAKGSFAEILEYNMQLKIDSLITKEFNKLL 562
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.324 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 380,191
Number of Sequences: 1491
Number of extensions: 18895
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 8
length of query: 330
length of database: 494,079
effective HSP length: 78
effective length of query: 252
effective length of database: 377,781
effective search space: 95200812
effective search space used: 95200812
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)