BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645142|ref|NP_207312.1| heat shock protein (hslV)
[Helicobacter pylori 26695]
         (180 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223182.1|  HEAT SHOCK PROTEIN [Helicobacter pylori J99]    344  9e-97
ref|NP_224054.1|  putative [Helicobacter pylori J99]               24  2.1
ref|NP_224022.1|  putative [Helicobacter pylori J99]               24  2.1
ref|NP_223148.1|  TYPE II DNA MODIFICATION ENZYME (METHYLTRA...    23  3.6
ref|NP_223021.1|  putative [Helicobacter pylori J99]               23  3.6
ref|NP_223245.1|  putative [Helicobacter pylori J99]               23  4.7
ref|NP_222789.1|  UREASE BETA SUBUNIT [Helicobacter pylori J99]    23  4.7
ref|NP_222769.1|  sodium/proline symporter [Helicobacter pyl...    23  6.1

>ref|NP_223182.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
          Length = 180

 Score =  344 bits (882), Expect = 9e-97
 Identities = 173/180 (96%), Positives = 177/180 (98%)

Query: 1   MFEATTILGYRGELNHKKFALIGGDGQVTLGNCVVKANATKIRSLYHNQVLSGFAGSTAD 60
           MFEATTILGYRGE ++KKFALIGGDGQVTLGNCVVKANA KIRSLYHNQVLSGFAGSTAD
Sbjct: 1   MFEATTILGYRGEFDNKKFALIGGDGQVTLGNCVVKANAIKIRSLYHNQVLSGFAGSTAD 60

Query: 61  AFSLFDMFERILESKKGDLFKSVVDFSKEWRKDKYLRRLEAMMIVLNFDHIFILSGMGDV 120
           AFSLFDMFERILESKKGDLFKSVVDFSKEWRKDKYLRRLEAMMIVLNFDH+FILSG GDV
Sbjct: 61  AFSLFDMFERILESKKGDLFKSVVDFSKEWRKDKYLRRLEAMMIVLNFDHVFILSGTGDV 120

Query: 121 LEAEDNKIAAIGSGGNYALSAARALDHFAHLEPRKLVEESLKIAGDLCIYTNTNIKILEL 180
           LEAEDNKIAAIGSGGN+ALSAARALDHFAHLEPRKLVEESLKIAGDLCIYTNTNIKILEL
Sbjct: 121 LEAEDNKIAAIGSGGNFALSAARALDHFAHLEPRKLVEESLKIAGDLCIYTNTNIKILEL 180



>ref|NP_224054.1| putative [Helicobacter pylori J99]
          Length = 274

 Score = 24.3 bits (51), Expect = 2.1
 Identities = 25/84 (29%), Positives = 35/84 (40%), Gaps = 2/84 (2%)

Query: 94  KYLRRLEAMMIVLNFDHIFILSGMGDVLEAEDNKIAAIGSGGNYALSAARALDHFAHLEP 153
           K L+ L+  ++  NF H  I S     +E E N     G GG  A  A   L H   +  
Sbjct: 67  KALQVLKKFLVQKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSA-DAGGLLYHLNQMFD 125

Query: 154 RKLVEESLKIAGDLCIYTNTNIKI 177
            +L  + L   G L +  +TN  I
Sbjct: 126 WRLSLKELYTMGSL-VGADTNFFI 148



>ref|NP_224022.1| putative [Helicobacter pylori J99]
          Length = 309

 Score = 24.3 bits (51), Expect = 2.1
 Identities = 13/42 (30%), Positives = 24/42 (56%), Gaps = 3/42 (7%)

Query: 13  ELNHKKFALIGGDGQVTLGNCVVKANATKIRSLYHNQVLSGF 54
           +++H K + IG +   T+G+C +K    KI+S     ++S F
Sbjct: 64  KVSHTKASAIGSE---TIGSCDLKKACEKIKSGLPFGIISAF 102



>ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 545

 Score = 23.5 bits (49), Expect = 3.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 79  LFKSVVDFSKEWRKDKYLRRLEAMMIVLNFDHIFILSGMGDVLEAEDNK 127
           +F+S+    K  RKD     L A  I  +FD  F L  +G  +E +D K
Sbjct: 481 IFESLFKTHKILRKDLECLPLFAQFINNSFDEKFYLKNLG--IEKKDPK 527



>ref|NP_223021.1| putative [Helicobacter pylori J99]
          Length = 251

 Score = 23.5 bits (49), Expect = 3.6
 Identities = 11/34 (32%), Positives = 17/34 (49%)

Query: 103 MIVLNFDHIFILSGMGDVLEAEDNKIAAIGSGGN 136
           +I L+F     + G G   +   +KIA +G  GN
Sbjct: 210 LIALDFKEGRFVKGFGQAYDILGDKIAYVGDKGN 243



>ref|NP_223245.1| putative [Helicobacter pylori J99]
          Length = 372

 Score = 23.1 bits (48), Expect = 4.7
 Identities = 16/85 (18%), Positives = 41/85 (47%), Gaps = 3/85 (3%)

Query: 32  NCVVKANATKIRSLYHNQVLSGFAGSTADAFSLFDMFERILESKKGDLFKSVVDFSKE-- 89
           N  + A+A+ + SL ++ +LS +   T +      +   + +SK     ++ +  +KE  
Sbjct: 58  NDALSAHASSLISLPNDNLLSAYFSGTKEGARDVKISANLFDSKTNRWSEAFILLTKEEL 117

Query: 90  -WRKDKYLRRLEAMMIVLNFDHIFI 113
                +Y+++L   ++ L+ + I +
Sbjct: 118 SHHSHEYIKKLGNPLLFLHDNKILL 142



>ref|NP_222789.1| UREASE BETA SUBUNIT [Helicobacter pylori J99]
          Length = 569

 Score = 23.1 bits (48), Expect = 4.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)

Query: 124 EDNKIAAIGSGGN 136
           +D KIA IG GGN
Sbjct: 89  KDGKIAGIGKGGN 101



>ref|NP_222769.1| sodium/proline symporter [Helicobacter pylori J99]
          Length = 496

 Score = 22.7 bits (47), Expect = 6.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 86  FSKEWRKDKYLRRLEAMMIVLNFDHIFILSGM 117
           F   +  DK++ RL +  ++L F   +I SG+
Sbjct: 117 FETRFSDDKHILRLISAFVILIFFIFYISSGL 148



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.322    0.139    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,627
Number of Sequences: 1491
Number of extensions: 7387
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 8
length of query: 180
length of database: 494,079
effective HSP length: 72
effective length of query: 108
effective length of database: 386,727
effective search space: 41766516
effective search space used: 41766516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)