BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645146|ref|NP_207316.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(276 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223186.1| putative [Helicobacter pylori J99] 494 e-142
ref|NP_223762.1| putative [Helicobacter pylori J99] 59 1e-10
ref|NP_222918.1| putative [Helicobacter pylori J99] 52 2e-08
ref|NP_222869.1| putative [Helicobacter pylori J99] 46 1e-06
ref|NP_222941.1| putative [Helicobacter pylori J99] 44 4e-06
ref|NP_223741.1| putative [Helicobacter pylori J99] 39 1e-04
ref|NP_223289.1| putative [Helicobacter pylori J99] 39 1e-04
ref|NP_223037.1| putative [Helicobacter pylori J99] 39 2e-04
ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylor... 32 0.024
ref|NP_224155.1| putative [Helicobacter pylori J99] 30 0.069
ref|NP_223751.1| putative Outer membrane protein [Helicobac... 28 0.26
ref|NP_223471.1| putative [Helicobacter pylori J99] 27 0.77
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 26 1.0
ref|NP_223771.1| putative Outer membrane protein [Helicobac... 26 1.3
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 25 1.7
ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALP... 25 2.2
ref|NP_223666.1| putative [Helicobacter pylori J99] 25 2.9
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 25 2.9
ref|NP_224061.1| putative Inner membrane protein [Helicobac... 24 3.8
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 24 3.8
ref|NP_223767.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 24 5.0
ref|NP_223515.1| putative [Helicobacter pylori J99] 24 5.0
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 24 5.0
ref|NP_223180.1| putative [Helicobacter pylori J99] 23 6.5
ref|NP_222998.1| putative [Helicobacter pylori J99] 23 6.5
ref|NP_224203.1| ABC transporter, permease [Helicobacter py... 23 8.5
ref|NP_223813.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTE... 23 8.5
ref|NP_223158.1| putative [Helicobacter pylori J99] 23 8.5
>ref|NP_223186.1| putative [Helicobacter pylori J99]
Length = 283
Score = 494 bits (1273), Expect = e-142
Identities = 255/284 (89%), Positives = 262/284 (91%), Gaps = 9/284 (3%)
Query: 1 MFKDFYRTTLSFLKPLLLLLVLLLPFSLCIADEYISISDDWDE--------IVRNHKTYY 52
MF+DFYRTTLSFL+ LLLLL LLLPFSLCIADEYISISDDWDE RNHKTYY
Sbjct: 1 MFEDFYRTTLSFLRSLLLLLGLLLPFSLCIADEYISISDDWDERARNQWDETARNHKTYY 60
Query: 53 FENGLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAI 112
FENGLDHFNQGQY+QAFKDF+LAQEYSIGLG+VYLAKMYLEGKGVKVDYKKAQFYA+NAI
Sbjct: 61 FENGLDHFNQGQYKQAFKDFKLAQEYSIGLGNVYLAKMYLEGKGVKVDYKKAQFYAQNAI 120
Query: 113 KGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKSTNFANNFRLPNLAE 172
KGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKS NFAN F NLAE
Sbjct: 121 KGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKSANFANKFG-SNLAE 179
Query: 173 FTSMLIGSRFIDLSGLSANPIKFGKKFGILVKKSTQIKDKTLLWEDIAEISSNITLLKQQ 232
FTSMLIGSRFIDLSGLSANPIKFG KFGILVKK+ QIKD TL WEDIAEISSNI LLKQQ
Sbjct: 180 FTSMLIGSRFIDLSGLSANPIKFGNKFGILVKKALQIKDNTLSWEDIAEISSNIILLKQQ 239
Query: 233 MGEILYRIGIAYKEGLGTRKKKDRAKKFLQKSAEFGYEKAMEAL 276
MGEILYRIGIAYKEGLGTRKKKDRAKKFLQKSAEFGYEKAMEAL
Sbjct: 240 MGEILYRIGIAYKEGLGTRKKKDRAKKFLQKSAEFGYEKAMEAL 283
>ref|NP_223762.1| putative [Helicobacter pylori J99]
Length = 256
Score = 59.3 bits (142), Expect = 1e-10
Identities = 56/243 (23%), Positives = 106/243 (43%), Gaps = 46/243 (18%)
Query: 49 KTYYFENGLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYA 108
K Y G + +N +Y++A ++ A + L + L MY G+GV DYKKA Y
Sbjct: 30 KGNYIYKGEEAYNNKEYERAASFYKSAIKNGESLAYILLGIMYENGRGVPKDYKKAVEYF 89
Query: 109 ENAI-----KGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVV-RMFSNKSTNFA 162
+ A+ +GY + LG M EG G+ KD K+A++ +R + ++N N
Sbjct: 90 QKAVDNDIPRGYNN--------LGVMYKEGKGVPKDEKKAVEYFRIATEKGYTNAYIN-- 139
Query: 163 NNFRLPNLAEFTSMLIGSRFIDLSGLSANPIKFGKKFGILVKKSTQIKDKTLLWEDIAEI 222
+G +++ G+ +N K + F + K ++ LL +
Sbjct: 140 ---------------LGIMYMEGRGVPSNYAKATECFRKAMHKG-NVEAYILLGDIYYSG 183
Query: 223 SSNITLLKQQMGEILY--------------RIGIAYKEGLGTRKKKDRAKKFLQKSAEFG 268
+ + + + ++Y + +Y+ GLG K K +A++++QK+ +F
Sbjct: 184 NDQLGIEPDKDKAVVYYKMAADVSSSRAYEGLSESYRYGLGVEKDKKKAEEYMQKACDFD 243
Query: 269 YEK 271
+K
Sbjct: 244 IDK 246
Score = 29.3 bits (64), Expect = 0.12
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 240 IGIAYKEGLGTRKKKDRAKKFLQKSAEFGYEKA 272
+G+ YKEG G K + +A ++ + + E GY A
Sbjct: 104 LGVMYKEGKGVPKDEKKAVEYFRIATEKGYTNA 136
>ref|NP_222918.1| putative [Helicobacter pylori J99]
Length = 250
Score = 52.0 bits (123), Expect = 2e-08
Identities = 34/93 (36%), Positives = 45/93 (47%), Gaps = 5/93 (5%)
Query: 56 GLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKA-QFYAENAIKG 114
G++ + + QA F A E G G V+L Y EGKGV D KKA QFY +
Sbjct: 36 GIESVKKQDFAQAKAHFEKACELKEGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELN 95
Query: 115 YGSGLLGGALILGRMQAEGLGMKKDLKQALKTY 147
G G +LG + G G+ KD K+A + Y
Sbjct: 96 DGY----GCRLLGNLYYNGQGVSKDAKKASQYY 124
>ref|NP_222869.1| putative [Helicobacter pylori J99]
Length = 305
Score = 45.8 bits (107), Expect = 1e-06
Identities = 56/255 (21%), Positives = 94/255 (35%), Gaps = 33/255 (12%)
Query: 52 YFENGLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENA 111
YF+ +G Y +A ++ + +G+G L MY G GV + KA FY
Sbjct: 31 YFKMANQALKRGDYHRAVAFYKRSCNLRMGVGCTSLGSMYEYGDGVDQNISKAVFYYR-- 88
Query: 112 IKGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKS------------- 158
+G LG M +G G++KD +A+ YR + S
Sbjct: 89 -RGCNLRNHLACASLGSMYEDGDGVQKDFPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTG 147
Query: 159 --TNFANNFRLPNLAEFTSMLIGSRFIDLSGLSANPI-KFGKKFGILVKKSTQIKDKT-- 213
N+A A + I F+ SA + K KK K+ +KD
Sbjct: 148 VKQNYAKALSFSKYACSLNYGISCNFVGYMYKSAKGVEKDLKKALANFKRGCHLKDGASC 207
Query: 214 ----LLWEDIAEISSN----ITLLKQ----QMGEILYRIGIAYKEGLGTRKKKDRAKKFL 261
L+E ++ N + L K+ + G + + + Y G G K ++A +
Sbjct: 208 VSLGYLYEAGMDVKQNEEQALNLYKKGCSLKEGSGCHNVAVMYYTGKGAPKDLEKATSYY 267
Query: 262 QKSAEFGYEKAMEAL 276
+K G+ + + L
Sbjct: 268 KKGCALGFSGSCKVL 282
>ref|NP_222941.1| putative [Helicobacter pylori J99]
Length = 355
Score = 44.3 bits (103), Expect = 4e-06
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 60 FNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGL 119
+ G Y +A F+ A + G L +Y G+G ++DYKKA Y + A +
Sbjct: 38 YKSGNYSKAASYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADDR-- 95
Query: 120 LGGALILGRMQAEGLGMKKDLKQALKTY 147
G LG + EGLG ++ ++A+ Y
Sbjct: 96 -EGCFGLGGLYDEGLGTAQNYQEAIDAY 122
Score = 23.5 bits (49), Expect = 6.5
Identities = 22/82 (26%), Positives = 33/82 (39%), Gaps = 7/82 (8%)
Query: 66 QQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGLLGGALI 125
Q+AF F+ A + + + MY +G V D +KA +N +G G G
Sbjct: 260 QKAFNYFKQACDMGSAVSCSRMGFMYSQGDTVSKDLRKA---LDNYERGCDMGDEVGCFA 316
Query: 126 LGRMQAEGLGMKKDLKQALKTY 147
L M KD + A+ Y
Sbjct: 317 LAGMYYN----MKDKENAIMIY 334
Score = 23.5 bits (49), Expect = 6.5
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 96 GVKVDYKKAQFYAENAIKGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFS 155
G+ D++ A Y + A SG G LG M G +KKD ++A ++ M S
Sbjct: 218 GLDEDFEVAFDYLQKACALNNSG---GCASLGSMYMLGRYVKKDPQKAFNYFKQACDMGS 274
>ref|NP_223741.1| putative [Helicobacter pylori J99]
Length = 290
Score = 38.9 bits (89), Expect = 1e-04
Identities = 26/93 (27%), Positives = 44/93 (46%), Gaps = 5/93 (5%)
Query: 56 GLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKK-AQFYAENAIKG 114
G + + + QA K F A + G L +Y +G GV+ + KK A FY++
Sbjct: 36 GAKSYKEQDFTQAKKYFEKACDLKENSGCFNLGVLYYQGHGVEKNLKKAASFYSKACDLN 95
Query: 115 YGSGLLGGALILGRMQAEGLGMKKDLKQALKTY 147
Y + G +LG + G G+ ++ +AL+ Y
Sbjct: 96 YSN----GCHLLGNLYYSGQGVSQNTNKALQYY 124
Score = 37.0 bits (84), Expect = 6e-04
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 67 QAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGLLGGALIL 126
+A + + A + G L +Y +GK V D+KKA Y A G G IL
Sbjct: 119 KALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LNDG--DGCTIL 175
Query: 127 GRMQAEGLGMKKDLKQALKTY 147
G + G G KDLK+AL +Y
Sbjct: 176 GSLYDAGRGTPKDLKKALASY 196
Score = 31.6 bits (70), Expect = 0.024
Identities = 28/117 (23%), Positives = 44/117 (36%), Gaps = 33/117 (28%)
Query: 65 YQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKA-------------------- 104
+++A + F A + + G G L +Y G+G D KKA
Sbjct: 153 FKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAG 212
Query: 105 --QFYAENAIKGYGSGLL-----------GGALILGRMQAEGLGMKKDLKQALKTYR 148
+ E A K + L GG LG MQ G G ++ KQA++ ++
Sbjct: 213 NMYHHGEGAAKNFKEALARYSKACELENGGGCFNLGAMQYNGEGATRNEKQAIENFK 269
>ref|NP_223289.1| putative [Helicobacter pylori J99]
Length = 352
Score = 38.9 bits (89), Expect = 1e-04
Identities = 59/262 (22%), Positives = 101/262 (38%), Gaps = 59/262 (22%)
Query: 56 GLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFY-------- 107
G+D +G YQ AFK F + + G + MY G G++ + KA Y
Sbjct: 74 GIDLAKKGDYQGAFKLFSQSCDNGNAAGCFAVGAMYANGVGIQTNRLKAARYYEMGCSGG 133
Query: 108 ----------------------AENAIKGYGSGLLGGALI----LGRMQAEGLGMKKDLK 141
ENA++ Y GG ++ LG M A G G+ KD
Sbjct: 134 DATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYY 193
Query: 142 QALKTYRHVVRMFSNKSTNFANNFRLPNLAEFTSMLIGSRFIDLSGLSANPIKFGKKFGI 201
+A+ Y+ FS ++ N + L ++ ++ ID + LS + + +
Sbjct: 194 KAMSYYK-----FSCENGNDMGCYNLGLMSNVNNIY----GIDKAQLSQVDLNY-----L 239
Query: 202 LVKKSTQIKDKTLLW----EDI-AEISSNITLLKQQM---GEIL---YRIGIAYKEGLGT 250
+ L W D+ A ++++ QM G IL +G+ Y++GLG
Sbjct: 240 ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGV 299
Query: 251 RKKKDRAKKFLQKSAEFGYEKA 272
+ RA + + G+E +
Sbjct: 300 PQDDQRALDLFSYACDNGFESS 321
Score = 28.5 bits (62), Expect = 0.20
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 82 LGSVYLAKMYLEGK-GVKVDYKKAQFYAENAIKGYGSGLLGGALILGRMQAEGLGMKKDL 140
+G L +Y G G ++ A Y + A G G+LG LG + +GLG+ +D
Sbjct: 247 MGCANLGWIYANGDLGAPLNNHYAAKYFQMACDG---GILGSCNNLGVLYQKGLGVPQDD 303
Query: 141 KQALKTYRHVV-RMFSNKSTNFAN 163
++AL + + F + N+ N
Sbjct: 304 QRALDLFSYACDNGFESSCRNYGN 327
>ref|NP_223037.1| putative [Helicobacter pylori J99]
Length = 251
Score = 38.5 bits (88), Expect = 2e-04
Identities = 53/210 (25%), Positives = 84/210 (39%), Gaps = 10/210 (4%)
Query: 67 QAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGLLGGALIL 126
+A + + A E GLG L +Y G+GV+ + KA YA A +G+ G L
Sbjct: 49 KAAQPYTKACELKEGLGCERLWSLYYYGRGVEKNLIKAAQYASKAC-DLNNGV--GCKNL 105
Query: 127 GRMQAEGLGMKKDLKQALKTYRHVVRMFSNKSTNFANNFRLPNLAEFTSMLIGSRFIDLS 186
G + G G++KDL +A + Y +N S F + L + +
Sbjct: 106 GFLYEYGEGVEKDLIKAAQ-YASKACDLNNGSGCDVLGFLYGSGKGVEKNLTKAAYFYSK 164
Query: 187 GLSANPIKFGKKFGILVKKSTQIKDKTLLWEDIAEISSNITLLKQQMGEILYRIGIAYKE 246
N G L KD T +A + S LK+ G + + Y
Sbjct: 165 ACDLNEGLGCFNLGGLYNGQGVEKDLT----KVAYLYSKACELKESFG--CGALAVLYIN 218
Query: 247 GLGTRKKKDRAKKFLQKSAEFGYEKAMEAL 276
G G K +A +++ K+ + G ++A EAL
Sbjct: 219 GQGVEKDLTKADQYISKACKLGDQEACEAL 248
>ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 576
Score = 31.6 bits (70), Expect = 0.024
Identities = 25/82 (30%), Positives = 43/82 (51%), Gaps = 5/82 (6%)
Query: 194 KFGKKFGILVKKSTQIKDKTL---LWEDIAEISSNITLLKQQMGEILYRIGIAYKEGLGT 250
K+GK+ +LV K + D L L E+I EI++N +Q+ LY+I +++ +
Sbjct: 88 KYGKE--LLVFKDRKDNDFVLSPTLEENITEIAANFIKSYKQLPVHLYQIHTKFRDEIRP 145
Query: 251 RKKKDRAKKFLQKSAEFGYEKA 272
R RA++F+ K +E A
Sbjct: 146 RFGLVRAREFIMKDGYSFHEDA 167
>ref|NP_224155.1| putative [Helicobacter pylori J99]
Length = 256
Score = 30.0 bits (66), Expect = 0.069
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 75 AQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIKGYGSGLLGGALILGRMQAEGL 134
A E + G G L Y G+GV D+KKA Y+ A + + G L EG
Sbjct: 167 ACELNNGGGCSKLGGDYFFGEGVTKDFKKAFEYSAKACELNDA---KGCYALAAFYNEGK 223
Query: 135 GMKKDLKQ 142
G+ KD KQ
Sbjct: 224 GVAKDEKQ 231
Score = 28.5 bits (62), Expect = 0.20
Identities = 20/51 (39%), Positives = 23/51 (44%), Gaps = 7/51 (13%)
Query: 70 KDFRLAQEYSI-------GLGSVYLAKMYLEGKGVKVDYKKAQFYAENAIK 113
KDF+ A EYS G LA Y EGKGV D K+ E + K
Sbjct: 191 KDFKKAFEYSAKACELNDAKGCYALAAFYNEGKGVAKDEKQTTENLEKSCK 241
Score = 27.3 bits (59), Expect = 0.45
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 238 YRIGIAYKEGLGTRKKKDRAKKFLQKSAEFGYEKAMEAL 276
Y + Y EG G K + + + L+KS + G ++A + L
Sbjct: 213 YALAAFYNEGKGVAKDEKQTTENLEKSCKLGLKEACDIL 251
>ref|NP_223751.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 220
Score = 28.1 bits (61), Expect = 0.26
Identities = 17/43 (39%), Positives = 22/43 (50%), Gaps = 7/43 (16%)
Query: 178 IGSRFIDLSGLSANPIKFGKKFGILVKKSTQIKD---KTLLWE 217
+G RF G N I FG KF ++ K T+I D T LW+
Sbjct: 169 VGFRF----GFFHNEITFGLKFPVIPNKKTEIVDGLSATTLWQ 207
>ref|NP_223471.1| putative [Helicobacter pylori J99]
Length = 148
Score = 26.6 bits (57), Expect = 0.77
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 13 LKPLLLLLVLLLPFSLCIADEYISISDDWDEIVRNHKTYYFENGLDHFNQGQYQQAFKDF 72
+KP+ LL+ LLL + IA E + S+ +D I + G++ + + Q+
Sbjct: 4 MKPIFLLIFLLL--ASLIAREKDASSNLFDLI---------DKGINREQELKEQEQKTRL 52
Query: 73 RLAQEYSIGLGSVYLAKMYLEGKGVKVDY 101
+LAQ + L V YLE +G + Y
Sbjct: 53 KLAQSPLVALEIVPQETPYLEWQGARESY 81
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 26.2 bits (56), Expect = 1.0
Identities = 25/106 (23%), Positives = 45/106 (41%), Gaps = 14/106 (13%)
Query: 177 LIGSRFIDLSGLSANPIKFGKKFGILVK-------KSTQIKDKTLLWEDIAEISSNITLL 229
++ S + LSAN +FG F + K K +K + L + + ++
Sbjct: 5 IVFSSLVAFGVLSANVEQFGSFFNEIKKEQEEVAAKEDALKARKKLLNNTHDFLEDLVFR 64
Query: 230 KQQMGEIL-YRIGI------AYKEGLGTRKKKDRAKKFLQKSAEFG 268
KQ++ E++ YR + YK+ +K+ R K KS +G
Sbjct: 65 KQKIKELVDYRAKVLLDLENKYKKEKEALEKETRGKILTAKSKAYG 110
>ref|NP_223771.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 179
Score = 25.8 bits (55), Expect = 1.3
Identities = 22/76 (28%), Positives = 29/76 (37%), Gaps = 15/76 (19%)
Query: 42 DEIVR----NHKTYYFENGLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGV 97
DEIV+ NH E D F +Y QA +G+ K L KGV
Sbjct: 94 DEIVQKAKENHMQVLLEGNTDEFGSSEYNQA-----------LGVKRTLSVKNALVIKGV 142
Query: 98 KVDYKKAQFYAENAIK 113
+ D K + E+ K
Sbjct: 143 EKDMIKTISFGESKPK 158
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 25.4 bits (54), Expect = 1.7
Identities = 17/62 (27%), Positives = 28/62 (44%), Gaps = 2/62 (3%)
Query: 53 FENGLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENAI 112
+ L+ Q+Q K+F S+GL + + G GV++ YK QF+ +N
Sbjct: 282 YSYSLNETQYSQFQTTTKEFGHNPFRSVGLINSQSNNGAMNGVGVQLGYK--QFFGKNKF 339
Query: 113 KG 114
G
Sbjct: 340 FG 341
>ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter
pylori J99]
Length = 788
Score = 25.0 bits (53), Expect = 2.2
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 11/42 (26%)
Query: 30 IADEYISISDDWDEIVRNHKTYYFENGLDHFNQGQYQQAFKD 71
I EYI+ D W +I+ N YFE GL AFKD
Sbjct: 376 IIKEYINAKDLWKKILMN----YFEAGLPFL-------AFKD 406
>ref|NP_223666.1| putative [Helicobacter pylori J99]
Length = 420
Score = 24.6 bits (52), Expect = 2.9
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 9 TLSFLKPLLLLLVLLLPFSL 28
+L+F PLLLLLVL F+L
Sbjct: 275 SLTFYMPLLLLLVLFNSFAL 294
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 24.6 bits (52), Expect = 2.9
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 45 VRNHKTYYFENGLDHFNQGQYQQAFKDFRLAQEYSIGLGS 84
++N YF +GL ++ G+Y D L + LG+
Sbjct: 112 LKNDNGTYFLSGLYNYTGGEYNGGNLDIELGSNATFNLGA 151
>ref|NP_224061.1| putative Inner membrane protein [Helicobacter pylori J99]
Length = 549
Score = 24.3 bits (51), Expect = 3.8
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 126 LGRMQAEGLGMKKDLKQALKTY-RHVVRMFSNKSTNFANNFRLPNLAEFTSMLIGSRFID 184
LGR++ L KK L K + HV +FS+K + + LP LA + RF+D
Sbjct: 90 LGRIKQVYLKDKKYLTPKEKGFLEHVSHLFSSKENSQPSLKELPLLAADKLKPLEVRFLD 149
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 24.3 bits (51), Expect = 3.8
Identities = 23/76 (30%), Positives = 32/76 (41%), Gaps = 11/76 (14%)
Query: 27 SLCIADEYISISDDWDEIVRNHKTYYFENGLDHFNQGQY----QQAFKDFRLAQEYSIGL 82
+LC I +S E +N F N L FN Y Q++FKD EY L
Sbjct: 560 NLCATGRDIKLSTTHLENNKN-----FANKL--FNAASYLKLKQESFKDKERLNEYQTAL 612
Query: 83 GSVYLAKMYLEGKGVK 98
G +++ L K V+
Sbjct: 613 GRYAKSRLNLVTKEVR 628
>ref|NP_223767.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 321
Score = 23.9 bits (50), Expect = 5.0
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 117 SGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKSTNFANNFRL-PN-LAEFT 174
SG+ GG L L R + +G + +A++TY +F + NF + R+ PN L F
Sbjct: 11 SGIGGGRLGLERCHLKCVGHAEINHEAIRTY----ELFFKDTHNFGDLMRINPNDLPNFD 66
Query: 175 SMLIG 179
++ G
Sbjct: 67 VLVSG 71
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 23.9 bits (50), Expect = 5.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 14 KPLLLLLVLLLPFSLCIADEY 34
KP L+LL+ L+ FS C +Y
Sbjct: 3 KPFLILLIALIAFSGCNMRKY 23
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 23.9 bits (50), Expect = 5.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 41 WDEIVRNHKTYYFENGLDHF--NQGQYQQAFKDF 72
++EIV + + E LD+ N+ YQQ KDF
Sbjct: 511 FEEIVDSKFSASLEEELDNIAQNKADYQQVLKDF 544
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 23.5 bits (49), Expect = 6.5
Identities = 10/24 (41%), Positives = 14/24 (57%)
Query: 215 LWEDIAEISSNITLLKQQMGEILY 238
LW+DI +I N + +G ILY
Sbjct: 39 LWDDIIKIGGNDKINGHFIGSILY 62
>ref|NP_222998.1| putative [Helicobacter pylori J99]
Length = 290
Score = 23.5 bits (49), Expect = 6.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 246 EGLGTRKKKDRAKKFLQKSAEFGYEK 271
+G KKK+ +FL A F YEK
Sbjct: 128 KGKKYHKKKNHLNQFLTNHANFVYEK 153
>ref|NP_224203.1| ABC transporter, permease [Helicobacter pylori J99]
Length = 215
Score = 23.1 bits (48), Expect = 8.5
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 8 TTLSFLKPLLLLLVLLLPFS 27
TT SF P ++L++LLLP S
Sbjct: 59 TTRSF--PFIILIILLLPLS 76
>ref|NP_223813.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN [Helicobacter pylori
J99]
Length = 217
Score = 23.1 bits (48), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 5 FYRTTLSFLKPLLLLLVLLLPFS 27
+Y+TT S L L L+ LLP S
Sbjct: 180 YYKTTESLLMLSLTYLIALLPLS 202
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 23.1 bits (48), Expect = 8.5
Identities = 14/54 (25%), Positives = 27/54 (49%), Gaps = 5/54 (9%)
Query: 137 KKDLKQALKTYRHVVRMFSNKSTNFAN-----NFRLPNLAEFTSMLIGSRFIDL 185
+K+ +K+Y V +MF + + +F N NF +L + S ++ F +L
Sbjct: 516 QKEFSNDIKSYEKVKKMFVDNAGSFHNLIHDMNFPNVSLNAYLSDIMDRSFANL 569
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.140 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 303,169
Number of Sequences: 1491
Number of extensions: 14287
Number of successful extensions: 111
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 49
length of query: 276
length of database: 494,079
effective HSP length: 76
effective length of query: 200
effective length of database: 380,763
effective search space: 76152600
effective search space used: 76152600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)