BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645147|ref|NP_207317.1| cag pathogenicity island
protein (cag1) [Helicobacter pylori 26695]
(115 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223187.1| putative cag island protein [Helicobacter ... 217 8e-59
ref|NP_223463.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 26 0.33
ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERA... 25 0.55
ref|NP_223772.1| putative TONB-INDEPENDENT PROTEIN-UPTAKE P... 24 1.2
ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN... 24 1.2
ref|NP_223783.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223759.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223725.1| putative outer membrane protein [Helicobac... 23 2.8
ref|NP_223490.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223917.1| TRYPTOPHAN SYNTHASE BETA CHAIN [Helicobact... 22 3.6
ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 22 3.6
ref|NP_224056.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter... 22 4.7
ref|NP_223163.1| PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRAN... 22 6.1
ref|NP_223123.1| putative [Helicobacter pylori J99] 22 6.1
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 21 8.0
ref|NP_223641.1| putative [Helicobacter pylori J99] 21 8.0
ref|NP_223589.1| proline/betaine transporter [Helicobacter ... 21 8.0
>ref|NP_223187.1| putative cag island protein [Helicobacter pylori J99]
Length = 115
Score = 217 bits (552), Expect = 8e-59
Identities = 110/115 (95%), Positives = 110/115 (95%)
Query: 1 MADTINTTEATHETKKPNAFVNFFKNNLTDKRYDSLGLIGAGVLCCVLSGAMGIVGIIFV 60
MADTINTTE THETKKPNAFVNFFKNNLTDKRYDSLGLIGAGVLCCVLSGAMGIVGIIFV
Sbjct: 1 MADTINTTETTHETKKPNAFVNFFKNNLTDKRYDSLGLIGAGVLCCVLSGAMGIVGIIFV 60
Query: 61 AIGIFLSFSNINLVKLVEKLSKKQSKVPTTVNNETQKSQATSVTNEPTEAKETKD 115
AIGIFLSFSNINLVKLVEKLSKKQ K TTVNNETQKSQA SVTNEPTEAKETKD
Sbjct: 61 AIGIFLSFSNINLVKLVEKLSKKQPKAATTVNNETQKSQAASVTNEPTEAKETKD 115
>ref|NP_223463.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 183
Score = 25.8 bits (55), Expect = 0.33
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 57 IIFVAIG-IFLSFSNINLVKLVEKLSKKQSKVPTTVNNETQKSQATSVTNEPTEAKE 112
++FV IG + + + ++ ++ +K++SK + N TQ+ QA + N+ EAKE
Sbjct: 19 LLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKN--TQEVQANPMANKNQEAKE 73
>ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE [Helicobacter pylori
J99]
Length = 581
Score = 25.0 bits (53), Expect = 0.55
Identities = 12/28 (42%), Positives = 16/28 (56%)
Query: 68 FSNINLVKLVEKLSKKQSKVPTTVNNET 95
F N L KL EKL + K+PT+ + T
Sbjct: 542 FKNPLLEKLAEKLKEGSVKIPTSKDGRT 569
>ref|NP_223772.1| putative TONB-INDEPENDENT PROTEIN-UPTAKE PROTEIN [Helicobacter
pylori J99]
Length = 417
Score = 23.9 bits (50), Expect = 1.2
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 58 IFVAIGIFLSFSNINLVKLVEKLSK 82
+ AIG+F + ++++K ++KL K
Sbjct: 8 LIYAIGLFATDKTLDIIKTIQKLPK 32
>ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN 2 (HAP2) [Helicobacter
pylori J99]
Length = 685
Score = 23.9 bits (50), Expect = 1.2
Identities = 26/90 (28%), Positives = 40/90 (43%), Gaps = 20/90 (22%)
Query: 20 FVNFFKNNLTDKRYDSLGLIGAG--VLCCVLSGAMGIVGIIFVAIGIFLSFSNINLVKLV 77
F + ++ LT+K SLGL GAG L L GA G + + + +++L
Sbjct: 195 FGSHLQSTLTNKNALSLGLDGAGKSELSLNLKGADGSMHEVPI------------MLELP 242
Query: 78 EKLSKKQSKVPTTVNNETQKSQATSVTNEP 107
E S KQ N QK+ ++ N+P
Sbjct: 243 ESASIKQK------NAAIQKAMEQALENDP 266
>ref|NP_223783.1| putative [Helicobacter pylori J99]
Length = 290
Score = 22.7 bits (47), Expect = 2.8
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 69 SNINLVKLVEKLSKKQSKVPTTVNNETQKSQATSVTNEPTEAKETKD 115
S + L EK++ +KV + E Q+ S+ + ++T+D
Sbjct: 173 SKVQNALLEEKITSGHAKVLVGLEEEKQELILNSIIGQKLSVRQTED 219
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 22.7 bits (47), Expect = 2.8
Identities = 11/29 (37%), Positives = 17/29 (57%), Gaps = 1/29 (3%)
Query: 85 SKVPTTVNNETQKSQATSVTNEPTEAKET 113
++ T NNE +Q ++TN EAKE+
Sbjct: 195 TEAKTNANNEISNNQTQAITN-INEAKES 222
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 22.7 bits (47), Expect = 2.8
Identities = 13/40 (32%), Positives = 18/40 (44%)
Query: 68 FSNINLVKLVEKLSKKQSKVPTTVNNETQKSQATSVTNEP 107
FS+ N L EKLS+ + + T N S + N P
Sbjct: 218 FSDANTQSLFEKLSQITTNLQMTYENTDPFSSGNNDPNGP 257
>ref|NP_223490.1| putative [Helicobacter pylori J99]
Length = 296
Score = 22.7 bits (47), Expect = 2.8
Identities = 10/43 (23%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 55 VGIIFVAIGIFLSFSNINLVKLVEKLSKKQ---SKVPTTVNNE 94
+G++ + + FL+ S + +K+ +K +++ SK P+ V+++
Sbjct: 7 IGVVIMILVCFLACSQESFIKMQKKAQEQENDGSKRPSYVDSD 49
>ref|NP_223917.1| TRYPTOPHAN SYNTHASE BETA CHAIN [Helicobacter pylori J99]
Length = 393
Score = 22.3 bits (46), Expect = 3.6
Identities = 20/59 (33%), Positives = 25/59 (41%), Gaps = 15/59 (25%)
Query: 43 VLCCVLSGAMGIVGIIFVAIGIFLSFSNINLVKLVEKLSKKQSKVPTTVNNETQKSQAT 101
V+ CV G+ AIGIF +F N VKL+ P + ET K AT
Sbjct: 225 VIACVGGGSN--------AIGIFSAFLNDKEVKLI-------GVEPAGLGLETNKHGAT 268
>ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 660
Score = 22.3 bits (46), Expect = 3.6
Identities = 19/72 (26%), Positives = 34/72 (46%), Gaps = 4/72 (5%)
Query: 30 DKRYDSLGLIGAGVLCCVLSGAMGIVGIIFV----AIGIFLSFSNINLVKLVEKLSKKQS 85
+K Y SL +G L LS +G I + +F ++ + L+E ++ +Q+
Sbjct: 449 EKIYQSLSDMGFKNLPKDLSIVLGSFAISPIDAAEKYSLFSNYGTMLKPMLIESITNQQN 508
Query: 86 KVPTTVNNETQK 97
+V T ET+K
Sbjct: 509 EVKTFTPIETKK 520
>ref|NP_224056.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 150
Score = 21.9 bits (45), Expect = 4.7
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 20 FVNFFKNNLTDKRYDSLGLIGAGVLCCVLSGAMGIVGIIFVAIGIFLSFSNI 71
F ++ TD+R L L L + +G++ +GI L+F ++
Sbjct: 31 FATLRVDDYTDRRKLELALHKRLTLVATIGSNAPYIGLLGTVMGIMLTFMDL 82
>ref|NP_223163.1| PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE [Helicobacter
pylori J99]
Length = 353
Score = 21.6 bits (44), Expect = 6.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 39 IGAGVLCCVLSGAMGIVGIIFVAIGIFLSF 68
I A VLC LS ++GII + F+ F
Sbjct: 79 IVASVLCASLSNLYVLLGIIVLVGFSFVGF 108
>ref|NP_223123.1| putative [Helicobacter pylori J99]
Length = 409
Score = 21.6 bits (44), Expect = 6.1
Identities = 10/23 (43%), Positives = 12/23 (51%)
Query: 91 VNNETQKSQATSVTNEPTEAKET 113
VN E K S+ +P E KET
Sbjct: 6 VNGEAFKLSLESLEEDPFETKET 28
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 21.2 bits (43), Expect = 8.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 93 NETQKSQATSVTNEPTEAKETK 114
N K+ AT +TN PT E K
Sbjct: 61 NTKAKNNATILTNTPTLMDERK 82
>ref|NP_223641.1| putative [Helicobacter pylori J99]
Length = 268
Score = 21.2 bits (43), Expect = 8.0
Identities = 10/28 (35%), Positives = 14/28 (49%)
Query: 3 DTINTTEATHETKKPNAFVNFFKNNLTD 30
DTIN + ETK N + + +L D
Sbjct: 64 DTINQVKPNDETKSVNENIEKTQKDLDD 91
>ref|NP_223589.1| proline/betaine transporter [Helicobacter pylori J99]
Length = 452
Score = 21.2 bits (43), Expect = 8.0
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 17 PNAFVNFFKNNLTDKRYDSLGLIGAGVLCCVLSGAMGIVGIIFV 60
P A+V ++ ++ +G + A V+ +L G++ +GI V
Sbjct: 142 PGAWVFVHEHAPQGQKNTYIGFLTASVVSGILLGSLVYIGIYMV 185
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.313 0.129 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,274
Number of Sequences: 1491
Number of extensions: 5399
Number of successful extensions: 20
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 17
length of query: 115
length of database: 494,079
effective HSP length: 67
effective length of query: 48
effective length of database: 394,182
effective search space: 18920736
effective search space used: 18920736
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 43 (21.2 bits)