BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645149|ref|NP_207319.1| cag pathogenicity island
protein (cag4) [Helicobacter pylori 26695]
(169 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223190.1| cag island protein [Helicobacter pylori J99] 330 1e-92
ref|NP_222809.1| putative keto-acid dehydrogenase [Helicoba... 25 0.85
ref|NP_222768.1| putative TYPE II restriction enzyme [Helic... 24 2.5
ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter... 23 3.2
ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERA... 23 5.5
ref|NP_223612.1| GLYCYL-TRNA SYNTHETASE ALPHA CHAIN [Helico... 22 9.4
ref|NP_223053.1| ALPHA-KETOGLUTARATE PERMEASE [Helicobacter... 22 9.4
>ref|NP_223190.1| cag island protein [Helicobacter pylori J99]
Length = 169
Score = 330 bits (846), Expect = 1e-92
Identities = 159/169 (94%), Positives = 166/169 (98%)
Query: 1 MFEKWIGLTLLLNSLAYPCQKVTISFKQYENLLHIHQKGCDNEVMCRTLISIALLESSLG 60
MFEKWIGLTLLL+SL YPCQKV+ISFKQYENL+HIHQKGC+NEV+CRTLISIALLESSLG
Sbjct: 1 MFEKWIGLTLLLSSLGYPCQKVSISFKQYENLIHIHQKGCNNEVVCRTLISIALLESSLG 60
Query: 61 LNNRREKSLKDTSYSMFHITLNTAKKFYPTYSKTLLKFKLLNDVGFAIQLAKQILKENFD 120
LNN+REKSLKDTSYSMFHITLNTAKKFYPTYSKTLLK KLLNDVGFAIQLAKQILKENFD
Sbjct: 61 LNNKREKSLKDTSYSMFHITLNTAKKFYPTYSKTLLKTKLLNDVGFAIQLAKQILKENFD 120
Query: 121 YYKQKHPNKSVYQLVEMAIGAYNGGMKHNPNGAYVKKFRCIYSQVRYNE 169
YY QKHPNKSVYQLVEMAIGAYNGGMKHNPNGAY+KKFRCIYSQVRYNE
Sbjct: 121 YYHQKHPNKSVYQLVEMAIGAYNGGMKHNPNGAYMKKFRCIYSQVRYNE 169
>ref|NP_222809.1| putative keto-acid dehydrogenase [Helicobacter pylori J99]
Length = 314
Score = 25.4 bits (54), Expect = 0.85
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 93 KTLLKFKLLNDVGFAIQLAKQILKE--NFDYYKQKHPNKSVYQLVEMAIGAYN 143
KT K +L+ ++ A ++LKE +FD+Y+ PN+ V + +E I N
Sbjct: 2 KTFKKGVILDAKSVGLK-ALEVLKEVADFDFYEVTSPNQIVERSIEAEIMVLN 53
>ref|NP_222768.1| putative TYPE II restriction enzyme [Helicobacter pylori J99]
Length = 260
Score = 23.9 bits (50), Expect = 2.5
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 50 ISIALLESSLGL-NNRREKSLKDTSYSMFHI 79
I +A+L+ L + +N + + L DT+Y +HI
Sbjct: 217 IKVAILDGVLYIESNNKMRKLLDTTYRNYHI 247
>ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter pylori J99]
Length = 803
Score = 23.5 bits (49), Expect = 3.2
Identities = 21/69 (30%), Positives = 32/69 (45%), Gaps = 8/69 (11%)
Query: 53 ALLESSLGLNNRREKSLKDTSYSMFHITLNTAKKFYPTYSKTLLKFKLLNDVGFAIQLAK 112
A LE + + R EK+L F + NT +K Y K + F N+ A++L
Sbjct: 451 AELERASVVRARDEKAL-------FSMEGNTQEKI-AHYDKIIQNFPNSNEAQKALELKA 502
Query: 113 QILKENFDY 121
Q+L +N Y
Sbjct: 503 QLLFDNKHY 511
>ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter pylori
J99]
Length = 299
Score = 22.7 bits (47), Expect = 5.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 112 KQILKENFDYYKQKHPNKSVYQLVE 136
+ I K +FD KQ++PN +L E
Sbjct: 51 RPITKSDFDMIKQRNPNFDFDKLKE 75
>ref|NP_223612.1| GLYCYL-TRNA SYNTHETASE ALPHA CHAIN [Helicobacter pylori J99]
Length = 298
Score = 21.9 bits (45), Expect = 9.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 15 LAYPCQKVTISFKQYENLLHIHQKGCDNE 43
+ Y +++T+ ++ EN+L I DNE
Sbjct: 158 ITYGLERLTMYVQKVENILEIEWAKKDNE 186
>ref|NP_223053.1| ALPHA-KETOGLUTARATE PERMEASE [Helicobacter pylori J99]
Length = 437
Score = 21.9 bits (45), Expect = 9.4
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 44 VMCRTLISIALLESSLGLNNRREKSLKDTSYSMFHITLNTAKKFYPTYSKTL 95
+M T+ + A + +NN +E +K+T LN K + T+
Sbjct: 209 IMEETMDNEATPQKKTNVNNTKETHIKETQRGSLKELLNHKKALMIVFGLTM 260
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,448
Number of Sequences: 1491
Number of extensions: 8399
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 7
length of query: 169
length of database: 494,079
effective HSP length: 71
effective length of query: 98
effective length of database: 388,218
effective search space: 38045364
effective search space used: 38045364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)