BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644684|ref|NP_206854.1| hypothetical protein
[Helicobacter pylori 26695]
(419 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223393.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter ... 29 0.26
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 27 0.75
ref|NP_223081.1| GLUCOSE INHIBITED DIVISION PROTEIN B [Heli... 27 0.98
ref|NP_223138.1| putative [Helicobacter pylori J99] 27 1.3
ref|NP_223136.1| putative [Helicobacter pylori J99] 26 2.2
ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobact... 25 2.9
ref|NP_222748.1| putative [Helicobacter pylori J99] 25 3.7
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 25 4.9
ref|NP_223644.1| putative [Helicobacter pylori J99] 25 4.9
ref|NP_223330.1| putative [Helicobacter pylori J99] 25 4.9
ref|NP_223064.1| putative [Helicobacter pylori J99] 25 4.9
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 24 6.4
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 24 6.4
ref|NP_223725.1| putative outer membrane protein [Helicobac... 24 8.3
ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 24 8.3
>ref|NP_223393.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter pylori J99]
Length = 347
Score = 28.9 bits (63), Expect = 0.26
Identities = 21/64 (32%), Positives = 32/64 (49%), Gaps = 1/64 (1%)
Query: 224 LNYNRINWRDIGKDKNTTRQEYDLINSKRIANSNYLIS-KAKKVVKRYNDRFNNSLSEVK 282
L+YN+ + KD +Y L+N K AN+ LI +VK N + ++ VK
Sbjct: 126 LSYNKYLTKLYAKDLGVKALDYVLLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVNVVK 185
Query: 283 QEKE 286
+EKE
Sbjct: 186 EEKE 189
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 27.3 bits (59), Expect = 0.75
Identities = 19/54 (35%), Positives = 27/54 (49%), Gaps = 7/54 (12%)
Query: 179 NNTAINNATECFRIFTKIINPLAFYY--GKKGTRKGYLSNTI-----ITKDELN 225
NN AIN + R F++I++ L YY G G L N + T+D+LN
Sbjct: 309 NNKAINGESRLKRCFSEIVDNLGVYYKIGLSTDFTGKLFNEMYRWLGFTQDKLN 362
>ref|NP_223081.1| GLUCOSE INHIBITED DIVISION PROTEIN B [Helicobacter pylori J99]
Length = 178
Score = 26.9 bits (58), Expect = 0.98
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 244 EYDLINSKRIANSNYLISKAKKVVK 268
+ DLI S+ +A+S++LI K+++ +K
Sbjct: 113 QVDLITSRAVASSSFLIEKSQRFLK 137
>ref|NP_223138.1| putative [Helicobacter pylori J99]
Length = 495
Score = 26.6 bits (57), Expect = 1.3
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 250 SKRIANSNYLISKAKKVVKRYNDRFNNSLSEVKQEKEE-SQATQIHHIFP 298
SKR A + +I + K+V+K Y D F K EKEE + QI+ I P
Sbjct: 84 SKRYALKDLMIDE-KEVLKNYEDFFKQVPYITKGEKEELEKFIQINFINP 132
>ref|NP_223136.1| putative [Helicobacter pylori J99]
Length = 255
Score = 25.8 bits (55), Expect = 2.2
Identities = 33/117 (28%), Positives = 48/117 (40%), Gaps = 25/117 (21%)
Query: 118 QNIELLEYLMQRETNALKFLILYIQKVLMDSGIYPLFDN---FLQKQDTESFKQLKDGFT 174
+ ++L+E+LM L+ Y +L DS LF + FLQ D + F +L D F
Sbjct: 132 KRLKLVEFLM---------LLAYADGIL-DSKEKELFLDVGAFLQI-DNQDFNELYDNFE 180
Query: 175 HFTINN--TAINNATECFRIFT---------KIINPLAFYYGKKGTRKGYLSNTIIT 220
HF ++ A F I T K ++ A YY K K Y I+
Sbjct: 181 HFNSIEIPMSLEEAKNLFEIQTHTTMQDLEKKALDLSAPYYHKMNDNKRYSEQDFIS 237
>ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobacter pylori J99]
Length = 414
Score = 25.4 bits (54), Expect = 2.9
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 221 KDELNYNRINWRDIGKDKNTTRQEYDLINSKRIANSNYLISKAKKVVKRYNDRFNNSLSE 280
K++LN W I + + +E K+ A N LI K +K ++DRFN S
Sbjct: 11 KNKLNATLKGWLPILQSELEDLEEV----LKQNALDNPLIKIENKRIKNFSDRFNTKKS- 65
Query: 281 VKQEKEESQATQIHHIFPIQDFPII 305
+ E+ AT +F + II
Sbjct: 66 --SDHLENCATASKSLFETLESQII 88
>ref|NP_222748.1| putative [Helicobacter pylori J99]
Length = 565
Score = 25.0 bits (53), Expect = 3.7
Identities = 14/47 (29%), Positives = 25/47 (52%)
Query: 243 QEYDLINSKRIANSNYLISKAKKVVKRYNDRFNNSLSEVKQEKEESQ 289
++Y+L KR+ SK+ K +N + NN + ++Q KE S+
Sbjct: 393 EKYELQAIKRLDLQRCAKSKSFKASYNHNIKINNLANALRQGKEVSK 439
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 24.6 bits (52), Expect = 4.9
Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 6/47 (12%)
Query: 378 VKNEWELLKVIDAFYFDFNKSKDPSWSYLL------DKNDLRAFKLK 418
+K E EL K+ D Y DF K KD L+ +KN+ + K+K
Sbjct: 613 LKKEPELEKLKDEKYLDFEKLKDFLKDRLIGHFRVRNKNERKTEKIK 659
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 24.6 bits (52), Expect = 4.9
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 227 NRINWRDIGKDKNTTRQEYDLINSKRIANSNYLISKAKKVVKRYNDRFNNSLSEVKQEKE 286
N +W D + N + + LIN ++ ++ + A K+ + + FNN S + KE
Sbjct: 287 NYYSWIDKDDNANFAWKMHRLINENKLKENHLSANNANKIKQFF---FNNG-SILGWTKE 342
Query: 287 ESQATQ 292
E A Q
Sbjct: 343 EQSAIQ 348
>ref|NP_223330.1| putative [Helicobacter pylori J99]
Length = 450
Score = 24.6 bits (52), Expect = 4.9
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 219 ITKDELNYNRINWRDIGKDKNTTRQEYDLINSKR 252
IT+++ Y+RI+W D T E L + KR
Sbjct: 142 ITEEDFIYSRIDWEKF--DPTKTEDEIPLCDKKR 173
>ref|NP_223064.1| putative [Helicobacter pylori J99]
Length = 189
Score = 24.6 bits (52), Expect = 4.9
Identities = 11/30 (36%), Positives = 13/30 (42%)
Query: 62 SPYTNENVKMIFSKPDLNSDFSMHEYDKFF 91
S Y +K I K D + F EY K F
Sbjct: 62 SSYKERQLKRILQKIDAMNGFEFEEYSKIF 91
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 24.3 bits (51), Expect = 6.4
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 248 INSKRIANSNYLISKAKKVVKRYND---RFNNSLSEVKQEKEESQATQIHHI 296
+NS + A N + + N+ ++NSL E+ +E +ES++ + H+
Sbjct: 757 LNSLKNALENKIQKRTNAFASALNEIISSYSNSLLELDKEVKESESKVLEHL 808
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 24.3 bits (51), Expect = 6.4
Identities = 10/26 (38%), Positives = 19/26 (72%)
Query: 55 SIRDIWDSPYTNENVKMIFSKPDLNS 80
++RD+ +SP+ ENV ++ S P L++
Sbjct: 286 TLRDLENSPFIVENVPILNSTPILDN 311
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 23.9 bits (50), Expect = 8.3
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 175 HFTINNTAINNATECFRIFTKIINPLAFY---------YGKKGTR-KGYLSNTIIT-KDE 223
++ + NT + ATE F N L FY Y K +GY +N+++ ++
Sbjct: 94 YYILQNTILEKATELFTAANINGNGLTFYSQNPVYVMAYNKDNAEFEGYGNNSVVVIQNF 153
Query: 224 LNYNRIN 230
L YN N
Sbjct: 154 LPYNLNN 160
>ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 632
Score = 23.9 bits (50), Expect = 8.3
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 69 VKMIFSKPDLNSDFSMHEYDKFFSQPIKLLAYSGILFETKTGNRNIYTIQNIELLEYLMQ 128
+ +IF NSD S D F + K ++Y I + + N ++N+ + + L++
Sbjct: 24 ILLIFFLRSFNSDGSFS--DNFLASSTKNVSYHEIK-QLISNNE----VENVSIGQTLIK 76
Query: 129 RETNALKFLILYIQKVLMDSGIYPLFD 155
++YI K + D + PL D
Sbjct: 77 ASHKEGNNRVIYIAKRVPDLTLVPLLD 103
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.138 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,946
Number of Sequences: 1491
Number of extensions: 23006
Number of successful extensions: 85
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 17
length of query: 419
length of database: 494,079
effective HSP length: 80
effective length of query: 339
effective length of database: 374,799
effective search space: 127056861
effective search space used: 127056861
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)