BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645152|ref|NP_207322.1| cag pathogenicity island
protein (cag6) [Helicobacter pylori 26695]
(199 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223193.1| cag island protein [Helicobacter pylori J99] 385 e-109
ref|NP_224075.1| putative [Helicobacter pylori J99] 27 0.37
ref|NP_223405.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 25 1.4
ref|NP_223296.1| putative [Helicobacter pylori J99] 25 1.4
ref|NP_222977.1| putative [Helicobacter pylori J99] 25 1.9
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 24 2.4
ref|NP_223856.1| putative role in outermembrane permeabilit... 24 3.2
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 24 3.2
ref|NP_223692.1| putative [Helicobacter pylori J99] 24 3.2
ref|NP_222994.1| putative [Helicobacter pylori J99] 23 4.1
ref|NP_222809.1| putative keto-acid dehydrogenase [Helicoba... 23 4.1
ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE ... 23 5.4
ref|NP_223787.1| putative [Helicobacter pylori J99] 23 5.4
ref|NP_223508.1| GMP REDUCTASE [Helicobacter pylori J99] 23 5.4
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 23 7.1
ref|NP_223026.1| putative ENDONUCLEASE [Helicobacter pylori... 23 7.1
ref|NP_222945.1| GLUTAMYL TRNA REDUCTASE [Helicobacter pylo... 23 7.1
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 23 7.1
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 22 9.2
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 22 9.2
ref|NP_223862.1| putative [Helicobacter pylori J99] 22 9.2
>ref|NP_223193.1| cag island protein [Helicobacter pylori J99]
Length = 199
Score = 385 bits (989), Expect = e-109
Identities = 195/199 (97%), Positives = 196/199 (97%)
Query: 1 MELGFNEAERQKILDSNSSLMGNANEVRDKFIQNYASSLKDSNDPQDFLRRVQELRINMQ 60
MELGFNEAERQKILDSNSSL+ NANEVRDKFIQNYA SLKDSNDPQDFLRRVQELRINMQ
Sbjct: 1 MELGFNEAERQKILDSNSSLIRNANEVRDKFIQNYAISLKDSNDPQDFLRRVQELRINMQ 60
Query: 61 KNFISFDVYYNYLNNLVLASYNRCKQEKTFAESTIKNELTLGEFVAEISDNFNNFMCDEV 120
KNFISFD YYNYLNNLVLASYNRCKQEKTFAESTIKNELTLGEFVAEISDNFNNFMCDEV
Sbjct: 61 KNFISFDTYYNYLNNLVLASYNRCKQEKTFAESTIKNELTLGEFVAEISDNFNNFMCDEV 120
Query: 121 ARISDLVASYLPREYLPPFIDGNMMGVAFQILGIDDFGRKLNEIVQDIGTKYIILSKNKT 180
ARISDLVASYLPREYLPPFIDGNMMGVAFQILGIDDFGRKLNEIVQDIGTKYIILSKNKT
Sbjct: 121 ARISDLVASYLPREYLPPFIDGNMMGVAFQILGIDDFGRKLNEIVQDIGTKYIILSKNKT 180
Query: 181 YLTSLERAKLITQLKLNLE 199
YLTSLERAKLITQLKLNLE
Sbjct: 181 YLTSLERAKLITQLKLNLE 199
>ref|NP_224075.1| putative [Helicobacter pylori J99]
Length = 271
Score = 26.9 bits (58), Expect = 0.37
Identities = 22/63 (34%), Positives = 28/63 (43%), Gaps = 5/63 (7%)
Query: 20 LMGNANEVRD---KFIQNYASSLKDSNDPQ--DFLRRVQELRINMQKNFISFDVYYNYLN 74
L G+AN+V K I+N L D N + L V +L N+ FD N N
Sbjct: 143 LSGDANQVVQEVMKAIRNVNRILDDENVEKFKHILASVDDLIANLDSRKTQFDSLINNAN 202
Query: 75 NLV 77
NLV
Sbjct: 203 NLV 205
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 25.4 bits (54), Expect = 1.1
Identities = 19/52 (36%), Positives = 26/52 (49%), Gaps = 3/52 (5%)
Query: 2 ELGFNEAERQKILDSNSSLMGNANE--VRDKFIQNYASSLKDSNDPQDFLRR 51
EL E ERQ + SL N NE V++K + NY SL + FL++
Sbjct: 59 ELQKVEIERQMVA-LKKSLEKNRNESLVQEKVLTNYRKSLDHLQKQRSFLQK 109
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 25.0 bits (53), Expect = 1.4
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 32/127 (25%)
Query: 5 FNEAERQKILDSNSSLMGNANEV-----------------RDKFIQNYASSLKDSNDPQD 47
FN++ SNS++MG N V ++ IQ +A++L ++++P
Sbjct: 573 FNQSSGPTTQSSNSTVMGALNTVLQNVSNFQQSIQSAFQNQENNIQAWANALYNTSNPNG 632
Query: 48 ------FLRRVQELRINMQKNFISFDVYYNYLNNLV------LASYNRCKQEKTFAESTI 95
Q+LRI ++ NF N +N V L + ++ Q+ + + ST
Sbjct: 633 NQSQNLTTNNNQDLRIQLRANFYQL---INTINQQVPTDMNALINQSQQTQQTSGSASTT 689
Query: 96 KNELTLG 102
N G
Sbjct: 690 NNACASG 696
>ref|NP_223296.1| putative [Helicobacter pylori J99]
Length = 512
Score = 25.0 bits (53), Expect = 1.4
Identities = 17/54 (31%), Positives = 27/54 (49%), Gaps = 4/54 (7%)
Query: 3 LGFNEAERQKILDSNSSLMGNANEVRDKFIQNYASSLKDSNDPQDFLRRVQELR 56
L N E Q LD+NSSL N + I+N A K + P++ + + +L+
Sbjct: 96 LFMNAKEHQDFLDNNSSLYANTLGL----IENTAFKGKMIHSPKELIDCLTQLK 145
>ref|NP_222977.1| putative [Helicobacter pylori J99]
Length = 327
Score = 24.6 bits (52), Expect = 1.9
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 63 FISFDVYYNYLNNLVLASYNRCKQEKTFAESTIKNELTLGE 103
+ISF+V +N L+ VL N +EK F K E GE
Sbjct: 18 YISFNVDHNLLSAQVLRVKNHRIKEKFFKTFETKVETKNGE 58
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 24.3 bits (51), Expect = 2.4
Identities = 10/41 (24%), Positives = 21/41 (50%)
Query: 78 LASYNRCKQEKTFAESTIKNELTLGEFVAEISDNFNNFMCD 118
++ YNR + AE ++LGE + ++S N ++ +
Sbjct: 795 ISRYNRQRSVTVLAEPNRNAGVSLGEILTQVSKNTKEWLVE 835
>ref|NP_223856.1| putative role in outermembrane permeability [Helicobacter pylori
J99]
Length = 766
Score = 23.9 bits (50), Expect = 3.2
Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 48 FLRRVQELRINM--QKNFISFDVYYNYLNNLVLASYNRCKQEKTFAESTIKNELTLGEFV 105
+ R++E+ +N Q+ F+SF++ Y NN + + + ++ N+
Sbjct: 629 YQNRLEEISVNANYQRKFLSFNLSYFLRNNFSSGINSIVENPADYLKAGFSNDFGYFSMS 688
Query: 106 AEISDNFNN 114
A++ + N
Sbjct: 689 ADVGYDIRN 697
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 23.9 bits (50), Expect = 3.2
Identities = 8/27 (29%), Positives = 16/27 (58%)
Query: 79 ASYNRCKQEKTFAESTIKNELTLGEFV 105
+SYN+ + + ES + N + G+F+
Sbjct: 381 SSYNQMQDAINYGESLLSNTVAYGDFI 407
>ref|NP_223692.1| putative [Helicobacter pylori J99]
Length = 196
Score = 23.9 bits (50), Expect = 3.2
Identities = 17/60 (28%), Positives = 24/60 (39%), Gaps = 7/60 (11%)
Query: 74 NNLVLASYNRCKQEKTFAESTIKNELTLGEFVAEISD-------NFNNFMCDEVARISDL 126
NNL+ N E F E TI L L + V D N N F+ D + + ++
Sbjct: 92 NNLISMDMNGRSLEPVFVEKTINTILNLHDKVISAKDETISAFKNENMFLKDALISMQEV 151
>ref|NP_222994.1| putative [Helicobacter pylori J99]
Length = 157
Score = 23.5 bits (49), Expect = 4.1
Identities = 23/64 (35%), Positives = 28/64 (42%), Gaps = 8/64 (12%)
Query: 120 VARISDLVASYLPREYLPPFIDGNMMGVAF----QILGIDDFGRKLNEIVQDIGTK---- 171
VA I +S LP L PF G +M F +LG F L EI+ I K
Sbjct: 27 VAPIVFKASSILPELNLTPFESGKLMAQIFVRFNYVLGAIGFVVLLYEIISFIYYKRSLV 86
Query: 172 YIIL 175
Y+IL
Sbjct: 87 YLIL 90
>ref|NP_222809.1| putative keto-acid dehydrogenase [Helicobacter pylori J99]
Length = 314
Score = 23.5 bits (49), Expect = 4.1
Identities = 14/54 (25%), Positives = 26/54 (47%), Gaps = 1/54 (1%)
Query: 142 GNMMGVAFQILGIDDFGRKLNEIVQDIGTKYIILSKNKTYLTSLERAKLITQLK 195
G + G + ++G+ + G+++ ++ Q G K + S K ER L LK
Sbjct: 146 GLIKGGQWGVIGLGNIGKRVAKLAQAFGAKVVYFSP-KDKKEEYERLSLEELLK 198
>ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99]
Length = 688
Score = 23.1 bits (48), Expect = 5.4
Identities = 15/58 (25%), Positives = 28/58 (47%), Gaps = 5/58 (8%)
Query: 21 MGNANEVRDKFIQNYASSLKDSNDPQDF-----LRRVQELRINMQKNFISFDVYYNYL 73
MG +E +D I + S L+D+ DF L + ++++ + + I +V Y L
Sbjct: 464 MGMVSERQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQAL 521
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 23.1 bits (48), Expect = 5.4
Identities = 22/102 (21%), Positives = 43/102 (41%), Gaps = 8/102 (7%)
Query: 4 GFNEAERQKI--LDSNSSLMGNANEVRDKFIQNYASSLKDSNDPQDFLRRVQELRINMQK 61
G ++ +K+ D N + N + FI Y ++ FL+ + E I +
Sbjct: 19 GISQISLKKVATFDENGASFENLKSIN--FI--YGANGSGKTTTSSFLKNLAENGI--ED 72
Query: 62 NFISFDVYYNYLNNLVLASYNRCKQEKTFAESTIKNELTLGE 103
F + + + +L + YN+ +E+ S +K TLG+
Sbjct: 73 KFANSKIAWYNNESLKIEVYNKQFKEEQLRNSQVKGIFTLGK 114
>ref|NP_223508.1| GMP REDUCTASE [Helicobacter pylori J99]
Length = 325
Score = 23.1 bits (48), Expect = 5.4
Identities = 23/96 (23%), Positives = 43/96 (43%), Gaps = 10/96 (10%)
Query: 85 KQEKTFAESTIKNELTLGEFVAEISDNFNNFMCDEVARISDLVASYLPREYLPPFIDGNM 144
K+E F E K LT +I+ +N + + + RI + LP ++ I GN
Sbjct: 95 KEECLFVEELAKQGLTPDYITIDIAHGHSNSVIEMIQRIK----TRLPETFV---IAGN- 146
Query: 145 MGVAFQILGIDDFGRKLNEIVQDIGTKYIILSKNKT 180
+G + +++ G ++ IG + ++K KT
Sbjct: 147 VGTPEAVRELENAGADATKV--GIGPGKVCITKIKT 180
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 22.7 bits (47), Expect = 7.1
Identities = 21/82 (25%), Positives = 32/82 (38%), Gaps = 9/82 (10%)
Query: 3 LGFNEAERQKILDSNSSLMGNANEVRDKFIQNYASSLKDSNDPQDFL---------RRVQ 53
L F EA DS + G +N K +QN + ++ N P+ L ++Q
Sbjct: 434 LNFKEALSTLGNDSKAINSGISNLPNAKSLQNMTHATQNPNSPEGLLTYSLDTSKYNQLQ 493
Query: 54 ELRINMQKNFISFDVYYNYLNN 75
+ + KN NY NN
Sbjct: 494 TVAQELGKNPFRRIGVINYQNN 515
>ref|NP_223026.1| putative ENDONUCLEASE [Helicobacter pylori J99]
Length = 180
Score = 22.7 bits (47), Expect = 7.1
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 9 ERQKILDSNSSLMGNANEVRDKFIQNYASSLKDSNDPQDFLR 50
++ I+D +G+AN ++ F NY LK ++D + L+
Sbjct: 125 QKVAIIDDKIVFLGSANWSKNAFENNYEVLLK-TDDTETILK 165
>ref|NP_222945.1| GLUTAMYL TRNA REDUCTASE [Helicobacter pylori J99]
Length = 449
Score = 22.7 bits (47), Expect = 7.1
Identities = 17/67 (25%), Positives = 31/67 (45%), Gaps = 3/67 (4%)
Query: 53 QELRINMQKNFISFDVYYNYLNNLVLA-SYNRCKQEKTFAESTIKNELTLGEFVAEISDN 111
+E N++K I + + +L++ +A N K+E IKN L + A + N
Sbjct: 381 KEYEGNIEK--ILHNAFNTFLHHPTIALKKNAQKEESDVLVGAIKNLFNLDKSNANHAQN 438
Query: 112 FNNFMCD 118
N + C+
Sbjct: 439 LNLYKCE 445
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 22.7 bits (47), Expect = 7.1
Identities = 21/82 (25%), Positives = 32/82 (38%), Gaps = 9/82 (10%)
Query: 3 LGFNEAERQKILDSNSSLMGNANEVRDKFIQNYASSLKDSNDPQDFL---------RRVQ 53
L F EA DS + G +N K +QN + ++ N P+ L ++Q
Sbjct: 434 LNFKEALSTLGNDSKAINSGISNLPNAKSLQNMTHATQNPNSPEGLLTYSLDTSKYNQLQ 493
Query: 54 ELRINMQKNFISFDVYYNYLNN 75
+ + KN NY NN
Sbjct: 494 TVAQELGKNPFRRIGVINYQNN 515
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 22.3 bits (46), Expect = 9.2
Identities = 16/51 (31%), Positives = 23/51 (44%), Gaps = 6/51 (11%)
Query: 73 LNNLVLASYNRCKQEKTFAESTIKNELTLGEFVAEISDNFNNFMCDEVARI 123
+N+ L + R KQE T+ E+ F+ SD F+ C E RI
Sbjct: 311 INSFRLKGHFRWKQE------TLNEEIINNVFLVVKSDKFSIRYCREGERI 355
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 22.3 bits (46), Expect = 9.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 156 DFGRKLNEIVQDIGTKYIILSKNKTYLTSLERAK 189
+F KLN+ +QD+G I K LT +R K
Sbjct: 422 EFIAKLNKGLQDLGLGLIEKEKTTIPLTPTKRFK 455
>ref|NP_223862.1| putative [Helicobacter pylori J99]
Length = 112
Score = 22.3 bits (46), Expect = 9.2
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 26/114 (22%)
Query: 32 IQNYASSLKDSNDPQDFLRRVQELRINMQKNFISFDVYYN-YLNNLVLASYNRCKQEKTF 90
+++YA SL++ N + V+EL D Y +L N L S N QEK
Sbjct: 2 LEDYAISLEEVNFNDFIVVDVREL-----------DEYEELHLPNATLISVN--DQEK-- 46
Query: 91 AESTIKNELTLGEFVAEISDNFNNFMCDEVARISDLVASYLPREYLPPFIDGNM 144
L +F+++ D C R D S Y P +++GN+
Sbjct: 47 ----------LADFLSQHKDQKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNV 90
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.137 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,750
Number of Sequences: 1491
Number of extensions: 9416
Number of successful extensions: 45
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 23
length of query: 199
length of database: 494,079
effective HSP length: 73
effective length of query: 126
effective length of database: 385,236
effective search space: 48539736
effective search space used: 48539736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)