BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645153|ref|NP_207323.1| cag pathogenicity island
protein (cag7) [Helicobacter pylori 26695]
(1927 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 2011 0.0
ref|NP_222758.1| DNA transformation compentancy [Helicobact... 70 7e-13
ref|NP_223025.1| putative [Helicobacter pylori J99] 64 5e-11
ref|NP_223176.1| putative [Helicobacter pylori J99] 53 7e-08
ref|NP_223787.1| putative [Helicobacter pylori J99] 52 1e-07
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 50 7e-07
ref|NP_223788.1| putative [Helicobacter pylori J99] 48 3e-06
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 48 3e-06
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 46 1e-05
ref|NP_222796.1| putative [Helicobacter pylori J99] 45 2e-05
ref|NP_222772.1| putative [Helicobacter pylori J99] 45 2e-05
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 45 2e-05
ref|NP_222831.1| putative [Helicobacter pylori J99] 43 9e-05
ref|NP_222962.1| putative [Helicobacter pylori J99] 42 2e-04
ref|NP_223773.1| putative [Helicobacter pylori J99] 40 6e-04
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 39 0.001
ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter... 38 0.002
ref|NP_223830.1| putative [Helicobacter pylori J99] 37 0.005
ref|NP_223038.1| putative [Helicobacter pylori J99] 37 0.005
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 36 0.008
ref|NP_223645.1| putative [Helicobacter pylori J99] 36 0.008
ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helic... 36 0.011
ref|NP_223515.1| putative [Helicobacter pylori J99] 35 0.014
ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99] 35 0.014
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 35 0.024
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 35 0.024
ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE ... 35 0.024
ref|NP_223770.1| putative [Helicobacter pylori J99] 35 0.024
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 34 0.032
ref|NP_223560.1| putative [Helicobacter pylori J99] 34 0.032
ref|NP_223415.1| putative [Helicobacter pylori J99] 34 0.032
ref|NP_223625.1| putative [Helicobacter pylori J99] 34 0.041
ref|NP_224063.1| putative thiophene/furan oxidation protein... 33 0.054
ref|NP_223610.1| putative [Helicobacter pylori J99] 33 0.054
ref|NP_222774.1| putative [Helicobacter pylori J99] 33 0.054
ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylor... 33 0.070
ref|NP_222840.1| putative [Helicobacter pylori J99] 33 0.070
ref|NP_224153.1| putative [Helicobacter pylori J99] 33 0.092
ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter py... 33 0.092
ref|NP_223971.1| putative [Helicobacter pylori J99] 33 0.092
ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobact... 32 0.12
ref|NP_223889.1| putative [Helicobacter pylori J99] 32 0.16
ref|NP_223159.1| putative [Helicobacter pylori J99] 32 0.21
ref|NP_222839.1| putative [Helicobacter pylori J99] 32 0.21
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 31 0.27
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 31 0.27
ref|NP_223388.1| putative [Helicobacter pylori J99] 31 0.27
ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helico... 31 0.27
ref|NP_223180.1| putative [Helicobacter pylori J99] 31 0.27
ref|NP_223639.1| putative [Helicobacter pylori J99] 31 0.35
ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobact... 31 0.35
ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter p... 30 0.46
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 30 0.46
ref|NP_223252.1| putative [Helicobacter pylori J99] 30 0.46
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 30 0.46
ref|NP_222895.1| putative [Helicobacter pylori J99] 30 0.46
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 30 0.60
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 30 0.60
ref|NP_223642.1| putative [Helicobacter pylori J99] 30 0.60
ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicob... 30 0.78
ref|NP_223761.1| putative [Helicobacter pylori J99] 30 0.78
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 30 0.78
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 30 0.78
ref|NP_222894.1| putative [Helicobacter pylori J99] 30 0.78
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 29 1.0
ref|NP_223917.1| TRYPTOPHAN SYNTHASE BETA CHAIN [Helicobact... 29 1.0
ref|NP_223659.1| putative [Helicobacter pylori J99] 29 1.0
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 29 1.0
ref|NP_223405.1| putative [Helicobacter pylori J99] 29 1.3
ref|NP_224003.1| putative [Helicobacter pylori J99] 28 1.7
ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter p... 28 1.7
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 28 1.7
ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99] 28 1.7
ref|NP_223387.1| putative [Helicobacter pylori J99] 28 1.7
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 28 2.3
ref|NP_224114.1| putative component of cation transport for... 28 2.3
ref|NP_223651.1| putative [Helicobacter pylori J99] 28 2.3
ref|NP_222979.1| putative [Helicobacter pylori J99] 28 3.0
ref|NP_222926.1| putative [Helicobacter pylori J99] 28 3.0
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 27 3.9
ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter p... 27 3.9
ref|NP_223990.1| putative [Helicobacter pylori J99] 27 3.9
ref|NP_223520.1| putative [Helicobacter pylori J99] 27 3.9
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 27 3.9
ref|NP_222827.1| putative [Helicobacter pylori J99] 27 3.9
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 27 5.1
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 27 5.1
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 27 5.1
ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [He... 27 5.1
ref|NP_223039.1| putative [Helicobacter pylori J99] 27 5.1
ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 27 5.1
ref|NP_222743.1| putative Outer membrane protein [Helicobac... 27 5.1
ref|NP_223991.1| NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [H... 27 6.6
ref|NP_223614.1| putative [Helicobacter pylori J99] 27 6.6
ref|NP_223322.1| putative [Helicobacter pylori J99] 27 6.6
ref|NP_223290.1| putative [Helicobacter pylori J99] 27 6.6
ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Heli... 27 6.6
ref|NP_222890.1| putative [Helicobacter pylori J99] 27 6.6
ref|NP_224212.1| putative [Helicobacter pylori J99] 26 8.6
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 26 8.6
ref|NP_223617.1| putative [Helicobacter pylori J99] 26 8.6
ref|NP_223445.1| putative HEAVY-METAL CATION-TRANSPORTING P... 26 8.6
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 26 8.6
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 2011 bits (5209), Expect = 0.0
Identities = 1063/1409 (75%), Positives = 1174/1409 (82%), Gaps = 120/1409 (8%)
Query: 139 ETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNFDGDKSEETQT 198
ETSKK QQ SPQDLSNEEATEANHFE+LLKES ESSD+HLDNPTET+T+FD DK EETQT
Sbjct: 9 ETSKKAQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDNPTETKTHFDEDKLEETQT 68
Query: 199 QMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQ 258
QMDS GNETSESSNGSLADKLFKKARKLVD+K+PFTQQK+LDEETQ+LNEEDDQENNE+Q
Sbjct: 69 QMDSGGNETSESSNGSLADKLFKKARKLVDDKRPFTQQKSLDEETQKLNEEDDQENNEHQ 128
Query: 259 EETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTE----- 313
EETQTDLIDDETS+KTQQ SPQDLSNEEATEANHFE+LLKES ESSD+HLDNPTE
Sbjct: 129 EETQTDLIDDETSEKTQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDNPTESSDNH 188
Query: 314 -----------TQTNFDGDKSEEITDDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRS 362
T+T+FD DK EEITDDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRS
Sbjct: 189 LDNPTETKTQETKTHFDEDKPEEITDDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRS 248
Query: 363 IFHYFMPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRT 422
IFHYF+PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRT
Sbjct: 249 IFHYFVPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRT 308
Query: 423 LYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAK 482
LYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAK
Sbjct: 309 LYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAK 368
Query: 483 TEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFR 542
TEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER ECLKLINDPEIREKFR
Sbjct: 369 TEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFR 428
Query: 543 KELELQKELQEYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNEC 602
KELELQKELQEYKDCIKNAKTEAEKN+CLKGLSKEAIERLKQQALDCLKNAKTDEER EC
Sbjct: 429 KELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKEC 488
Query: 603 LKNIPQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNA 662
LKNIPQDLQKELLADMSVKAYKDCVS+ARNEKEKQECEKLLTPEA+K LE Q LDCLKNA
Sbjct: 489 LKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKQECEKLLTPEAKKLLENQALDCLKNA 548
Query: 663 KTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEE 722
KTDEERK+CLK+LPKDLQSDILAKESLKAYKDC SQAKTEAEKKECEKLLTPEAKKLLEE
Sbjct: 549 KTDEERKECLKNLPKDLQSDILAKESLKAYKDCASQAKTEAEKKECEKLLTPEAKKLLEE 608
Query: 723 EAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSRARNEKEK 782
EAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSV+AYLDCVS+A+NE E+
Sbjct: 609 EAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVRAYLDCVSKAKNEAER 668
Query: 783 KECEKLLTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYLDCV 842
KECEKLLTPEAKKLLE QALDCLKNAKTD+ERK+CLKDLPKDLQKKVLAKESV+ YLDCV
Sbjct: 669 KECEKLLTPEAKKLLENQALDCLKNAKTDEERKECLKDLPKDLQKKVLAKESVRVYLDCV 728
Query: 843 SQAKTEAEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARK 902
S+AK EAE+KECEKLLTPEARKLLEEAKKSVKAY DCV +A+ E EK+ECEKLLTPEARK
Sbjct: 729 SKAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVLRARNEKEKQECEKLLTPEARK 788
Query: 903 LLEEXAKESVKAYLDCVSQAKNEAEKKECEKLLTLESKKKLEEAKKSVKAYLDCVSQAKT 962
LLEE +K+SVKAYLDCVS+AKNEAE+KECEKLLT E++K LEEAK+SVKAY DCVS+A+
Sbjct: 789 LLEE-SKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARN 847
Query: 963 EAEKKECEKLLTPEAKKLLEQQA------LDCLKNAKTEADKKRCVKDLPKDLQKKV-LA 1015
E EK+ECEKLLTPEA+KLLE+ LDC+ AK EA++K C K L + +K + A
Sbjct: 848 EKEKQECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLEEA 907
Query: 1016 KESLKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEE----------------------- 1052
KES+KAYKDCVS+ARNEKEK+ECEKLLTPEAKKLLE
Sbjct: 908 KESVKAYKDCVSRARNEKEKQECEKLLTPEAKKLLENQALDCLKNAKTEAEKKRCVKDLP 967
Query: 1053 --------AKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSK 1104
AK+SV+ YLDCVS+AK EAE+KECEKLLTPEARKLLEEAKESVKAYKDCVS+
Sbjct: 968 KDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSR 1027
Query: 1105 ARNEKEKKECEKLLTPEAKKLLEQQV---------------------------------- 1130
ARNEKEK+ECEKLLTPEA+KLLEQ+V
Sbjct: 1028 ARNEKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKL 1087
Query: 1131 -----LDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEK 1185
LDCLKNAKTEA+KKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEK
Sbjct: 1088 LENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEK 1147
Query: 1186 LLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSIKAYL 1245
LLTPEA+KLLEE+K+S+KAY DC+S+A+NE E++ CEKLLTPEARKLLE E K+S+KAY
Sbjct: 1148 LLTPEARKLLEESKKSVKAYLDCVSKAKNEAEKKECEKLLTPEARKLLE-EAKESVKAYK 1206
Query: 1246 DCVSRARNEKEKKECEKLLTPEARKFLAKQV-------LNCLEKAGNEEERKACLKNLPK 1298
DCVSRARNEKEK+ECEKLLTPEARK L ++V L+C+ +A NE+E++ C K L
Sbjct: 1207 DCVSRARNEKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTP 1266
Query: 1299 DLQENI--LAKESLKAYKDCLSQARNEEERRA---CEKLLTPEARKLLEQEVKKSVKAYL 1353
+ ++ + ++ KA KDCL A + +R A C L+ E + QE ++ KA L
Sbjct: 1267 EARKFLEKQRQQKDKAIKDCLKNA-DPNDRAAIMKCLDGLSDEEKLKYLQEARE--KAVL 1323
Query: 1354 DCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAI---------KDCLKNA-DPNDR 1403
DC+ AR ++EK++C+ L + ++ K+ Q K + +CL N DP D+
Sbjct: 1324 DCLKTARTDEEKRKCQNLYSDLIQEIQNKKAQNKQNQLSKTERLHQASECLDNLDDPTDQ 1383
Query: 1404 AAIMKCLDGLSDEEKLKYLQEAREKAVAD 1432
AI +CL+GLSD E+ L R+ D
Sbjct: 1384 EAIEQCLEGLSDSERALILGIKRQADEVD 1412
Score = 1256 bits (3249), Expect = 0.0
Identities = 793/1638 (48%), Positives = 1014/1638 (61%), Gaps = 230/1638 (14%)
Query: 1 MNEENDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDG 60
MNEENDKLETSKKAQQDSPQDLSNEEATEANHFE+LLKES ESSD+HLDNPTET+THFD
Sbjct: 1 MNEENDKLETSKKAQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDNPTETKTHFDE 60
Query: 61 DKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEED 120
DK EETQTQMDS GNETSESSNGSLADKLFKKARKLVD+K+PFTQQK+LDEETQ+LNEED
Sbjct: 61 DKLEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDDKRPFTQQKSLDEETQKLNEED 120
Query: 121 DQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDN 180
DQENNE+QEETQTDLIDDETS+KTQQ SPQDLSNEEATEANHFE+LLKES ESSD+HLDN
Sbjct: 121 DQENNEHQEETQTDLIDDETSEKTQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDN 180
Query: 181 PT----------------ETQTNFDGDKSEE-TQTQMDSE---GNETSESSNGSL----- 215
PT ET+T+FD DK EE T D E G++ G +
Sbjct: 181 PTESSDNHLDNPTETKTQETKTHFDEDKPEEITDDSNDQEIIKGSKKKYIIGGIVVAVLI 240
Query: 216 -----ADKLFKKARKLVDNKKPFTQQKNL--DEETQELNEEDD--QENNEYQEETQTDLI 266
+ +F L D F++ +NL ++E Q E + +E NE +L
Sbjct: 241 VIILFSRSIFHYFVPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLF 300
Query: 267 DDETSKKT----------QQHSPQDLSNEEATEANHFENLLK---------ESKESSDHH 307
++ +T + +P E + ++E LK + K++ + +
Sbjct: 301 FNDDPNRTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY 360
Query: 308 LDNPTETQTNFDGDKSEEITDDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF 367
D +T + K ++ D N KK ++ V V + +
Sbjct: 361 NDCIKNAKTEEERIKCLDLIKDEN--------LKKSLLNQQKVQVALDCL---------- 402
Query: 368 MPLEDKSSRFSKDRN--LYVNDEIQIRQEYNRLLKERNEKGNMID--KNLFFNDDPNRTL 423
K+++ ++R L + ++ +IR+++ + L+ + E D KN + N L
Sbjct: 403 -----KNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNECL 457
Query: 424 YNYLNIAEIEDKNPLRAFYECISNGGNYE---ECLKLI-KDKKLQDQMKKTLEAYNDCIK 479
L+ IE + +C+ N E ECLK I +D + + +++AY DC+
Sbjct: 458 KG-LSKEAIERLK--QQALDCLKNAKTDEERKECLKNIPQDLQKELLADMSVKAYKDCVS 514
Query: 480 NAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIRE 539
A+ E+E+ +C L+ E KK L NQ ALDCLKNAKTDEER ECLK + +
Sbjct: 515 RARNEKEKQECEKLLTPE-AKKLLENQ-----ALDCLKNAKTDEERKECLK-----NLPK 563
Query: 540 KFRKELELQKELQEYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQA-------LDCLKN 592
+ ++ ++ L+ YKDC AKTEAEK +C K L+ EA + L+++A LDC+
Sbjct: 564 DLQSDILAKESLKAYKDCASQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQ 623
Query: 593 AKTDEERNECLKNIPQDLQKEL-LADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKL 651
AKT+ E+ EC K + + +K+L A SV+AY DCVSKA+NE E++ECEKLLTPEA+K L
Sbjct: 624 AKTEAEKKECEKLLTPEAKKKLEEAKKSVRAYLDCVSKAKNEAERKECEKLLTPEAKKLL 683
Query: 652 EQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKTEAEKKECEKL 711
E Q LDCLKNAKTDEERK+CLKDLPKDLQ +LAKES++ Y DCVS+AK EAE+KECEKL
Sbjct: 684 ENQALDCLKNAKTDEERKECLKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKL 743
Query: 712 LTPEAKKLLE-------------------------------------EEAKESVKAYLDC 734
LTPEA+KLLE EE+K+SVKAYLDC
Sbjct: 744 LTPEARKLLEEAKKSVKAYKDCVLRARNEKEKQECEKLLTPEARKLLEESKKSVKAYLDC 803
Query: 735 VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSRARNEKEKKECEKLLTPEAK 794
VS+AK EAE+KECEKLLTPEA+K LEEAK+SVKAY DCVSRARNEKEK+ECEKLLTPEA+
Sbjct: 804 VSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQECEKLLTPEAR 863
Query: 795 KLLEQQA------LDCLKNAKTDKERKKCLKDLPKDLQKKV-LAKESVKAYLDCVSQAKT 847
KLLE+ LDC+ AK + ERK+C K L + +K + AKESVKAY DCVS+A+
Sbjct: 864 KLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARN 923
Query: 848 EAEKKECEKLLTPEARKLLEE-------------------------------AKKSVKAY 876
E EK+ECEKLLTPEA+KLLE AK+SV+ Y
Sbjct: 924 EKEKQECEKLLTPEAKKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVY 983
Query: 877 LDCVSQAKTEAEKKECEKLLTPEARKLLEEXAKESVKAYLDCVSQAKNEAEKKECEKLLT 936
LDCVS+AK EAE+KECEKLLTPEARKLLEE AKESVKAY DCVS+A+NE EK+ECEKLLT
Sbjct: 984 LDCVSKAKNEAERKECEKLLTPEARKLLEE-AKESVKAYKDCVSRARNEKEKQECEKLLT 1042
Query: 937 LESKKKLE-EAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTE 995
E++K LE E KKSVKAYLDCVS+A+ E EK+ECEKLLTPEA+KLLE QALDCLKNAKTE
Sbjct: 1043 PEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKLLENQALDCLKNAKTE 1102
Query: 996 ADKKRCVKDLPKDLQKKVLAKESLKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEAKK 1055
A+KKRCVKDLPKDLQKKVLAKES+KAY DCVS+ARNEKEKKECEKLLTPEA+KLLEE+KK
Sbjct: 1103 AEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEARKLLEESKK 1162
Query: 1056 SVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSKARNEKEKKECE 1115
SVKAYLDCVS+AK EAEKKECEKLLTPEARKLLEEAKESVKAYKDCVS+ARNEKEK+ECE
Sbjct: 1163 SVKAYLDCVSKAKNEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQECE 1222
Query: 1116 KLLTPEAKKLLEQQV-------LDCLKNAKTEADKKRCVKDLPKDLQK--KVLAKESVKA 1166
KLLTPEA+KLLEQ+V LDC+ A+ E +K+ C K L + +K + ++ KA
Sbjct: 1223 KLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLEKQRQQKDKA 1282
Query: 1167 YLDCVSRA--RNEKEKKECEKLLTPEAK-KLLEEAKESLKAYKDCLSQARNEEERRACEK 1223
DC+ A + +C L+ E K K L+EA+E KA DCL AR +EE+R C+
Sbjct: 1283 IKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEARE--KAVLDCLKTARTDEEKRKCQN 1340
Query: 1224 LLTPEARKLLEQEVKKSIKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQVLNCLEKA 1283
L Y D + +N+K + + +L E R A + L+ L+
Sbjct: 1341 L-------------------YSDLIQEIQNKKAQNKQNQLSKTE-RLHQASECLDNLDDP 1380
Query: 1284 GNEEERKACLKNLPKDLQENILAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQ 1343
++E + CL+ L + IL +K D + + ++ R + + LL
Sbjct: 1381 TDQEAIEQCLEGLSDSERALIL---GIKRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPM 1437
Query: 1344 EVKKSVKAYLDCVSRARNEKEKKECEK----LLTPEARKFLAKELQQKDKAIKDCLKNAD 1399
+ K + ++ + +K + + P+ K E KDK+++ L A
Sbjct: 1438 DFKNG--GDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKSLEAKLAKAL 1495
Query: 1400 PNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADC---LAMAKTDEEKRKCQNLYSDLIQE 1456
D+ K G + K +K VA+ ++ +K K + +
Sbjct: 1496 GGDKKDDDK-EKGKKPTAETKAESNKIDKDVAETAKNISEIALKNKKEKSGDFVDENGNP 1554
Query: 1457 IQNKRTQNKQNQLSKTER 1474
I +K+ + KQ++ S ++
Sbjct: 1555 IDDKKKEEKQDETSPVKQ 1572
>ref|NP_222758.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 376
Score = 69.7 bits (169), Expect = 7e-13
Identities = 89/314 (28%), Positives = 132/314 (41%), Gaps = 32/314 (10%)
Query: 1587 EKTIKDKNLEAKLA-KALGGNKKDDDKEKSKKSTA-EAKAENNKIDKDVAETAKNISEIA 1644
+ TIK + K A KAL + + KE++ S + K K D + S I
Sbjct: 68 DATIKALQEQLKAALKALNSKEMNYSKEETFTSPPMDPKTTPPKKDFSPKQLDLLASRIT 127
Query: 1645 LKNKKEKSGE----FVDENGNPIDD----KKKAEKQDETSPVKQAFIGKSDPTFVLAQYT 1696
+ K+ E F +N N ID K+K +E ++ K P F++ T
Sbjct: 128 PFKQSPKNYEENLIFPVDNPNGIDSFTNLKEKDIATNENKLLRTITADKMIPAFLI---T 184
Query: 1697 PIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSV-KGGTPIMTRL 1755
PI + KV A V D++ G +L+ KG+KV G Y + K G RL
Sbjct: 185 PISSQIAGKVIAQ--------VESDIFASMGKAVLIPKGSKVIGYYSNNNKMGE---YRL 233
Query: 1756 MIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAP 1815
IV+++ ITP G+ I L NA+ A + G G+ G + +R G ++ S + + L
Sbjct: 234 DIVWSRIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGI 293
Query: 1816 IIALDKLIGLGKGRSERTPEF--NYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNE 1873
AL+ +G E F +Y L Q + S Q+ NQIL I P E
Sbjct: 294 TSALN-----NRGNKEEVTNFFGDYLLLQLMRQSGMGINQVVNQILRDKSKIAPIVVIRE 348
Query: 1874 GDSIKILTMDDIDF 1887
G + I DI F
Sbjct: 349 GSRVFISPNTDIFF 362
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 63.5 bits (153), Expect = 5e-11
Identities = 74/322 (22%), Positives = 136/322 (41%), Gaps = 54/322 (16%)
Query: 2 NEENDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHL-DNPTETQTHFDG 60
N E L T + + ++P++ + EE + + + +E KE + +NP D
Sbjct: 156 NNEEQLLPTLNEQEGETPKEEAQEEVKK-EEVKEMQEEVKEKQKQEVAENPQ------DE 208
Query: 61 DKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEED 120
+K ++ +TQ E + E S K + +L K+ +Q+ + EETQE+ EE
Sbjct: 209 EKPKDDETQGSVEPPKDEEVS------KELETQEELETPKEETQEQEPIKEETQEIKEEK 262
Query: 121 DQEN------------NEYQEETQTDLIDDETSKKTQQ-----HSPQDLSNEEATEANHF 163
++ E +E Q + D E K+TQ+ +PQD+ +E
Sbjct: 263 QEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQETQENTETPQDIETQE------- 315
Query: 164 ENLLKESKESSDHHLDNPTETQTNFDGDKSEETQTQMDSEGNETSESSNGSLADKLFKKA 223
L+ KE + T+ Q +K E +T + E ET + + +L +
Sbjct: 316 ---LEIPKEEETQEVAEKTQVQ---GLEKEEIAETPQEKEIQETQDET----PQELEAQD 365
Query: 224 RKLVDNKKPFTQQKNLDEETQELNEED--DQENNEYQEETQTDLIDDETSKKTQQHSPQD 281
KL +N+ P + +++ E Q L +++ +E E E+ D+ + +K + P
Sbjct: 366 EKLQENETP--KDESMQESAQNLQDKETPQEETQEDHYESIEDIPEPVMAKAMGEELP-- 421
Query: 282 LSNEEATEANHFENLLKESKES 303
NE + + EN + KES
Sbjct: 422 FLNEAVAKIPNNENDTETPKES 443
Score = 50.4 bits (119), Expect = 4e-07
Identities = 97/449 (21%), Positives = 197/449 (43%), Gaps = 46/449 (10%)
Query: 600 NECLKNIPQDLQKELLADMSVKAYKDCVSKARNEKE------KQECEKLLTPEARKKLEQ 653
+ECL+ + Q EL +S C+ K NE + + + +K P K+ Q
Sbjct: 52 DECLEKLDQVDWLELKETISQNKNSVCMYKKGNEAQPFLEGFEMKIKKPFLPTEMLKVLQ 111
Query: 654 QVLDC----LKNAKTDEERKKCLKDLPKDLQS----DILAKESLKAYKDCV---SQAKTE 702
+ L L+ ++ + ++ L+ +L++ + LAKE + + ++ + E
Sbjct: 112 KKLGSNASELEPSQNLDPTQEILETNWDELENLGDLEALAKEEPNNEEQLLPTLNEQEGE 171
Query: 703 AEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEA 762
K+E ++ + E K ++EE KE K V++ + EK + ++ K EE
Sbjct: 172 TPKEEAQEEVKKEEVKEMQEEVKEKQKQE---VAENPQDEEKPKDDETQGSVEPPKDEEV 228
Query: 763 KKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLP 822
K ++ + + + E +++E K T E K+ +++ D + + +++L
Sbjct: 229 SKELETQEE-LETPKEETQEQEPIKEETQEIKEEKQEKTQD-----SPSAQELEAMQELV 282
Query: 823 KDLQKKVLAKESVKAYLDCVSQAKTEAEKK-ECEKLLTPEARKLLEEAKKSVKAYLDCVS 881
K++Q+ +E+ K + +Q TE + E ++L P+ + E A+K+ L+
Sbjct: 283 KEIQENSNDQENKKETQE--TQENTETPQDIETQELEIPKEEETQEVAEKTQVQGLEKEE 340
Query: 882 QAKTEAEKKECE-KLLTPEARKLLEEXAKESVKAYLDCVSQAKNEAEKKECEKLLTLESK 940
A+T EK+ E + TP+ + +E +E+ + + ++ + KE + T E
Sbjct: 341 IAETPQEKEIQETQDETPQELEAQDEKLQENETPKDESMQESAQNLQDKETPQEETQEDH 400
Query: 941 -KKLEEAKKSVKA-----YLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKT 994
+ +E+ + V A L +++A + E TP+ + Q K
Sbjct: 401 YESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNE-NDTETPKESDIKAPQ-------EKE 452
Query: 995 EADKKRCVKDLPKDLQK--KVLAKESLKA 1021
E+DK +L +LQ K L +ESLK+
Sbjct: 453 ESDKTSSPLELRLNLQDLLKSLNQESLKS 481
Score = 46.2 bits (108), Expect = 8e-06
Identities = 87/419 (20%), Positives = 176/419 (41%), Gaps = 57/419 (13%)
Query: 428 NIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEER 487
N +E+E L E + N++E L + L + E + + E +
Sbjct: 117 NASELEPSQNLDPTQEILET--NWDELENLGDLEALAKEEPNNEEQLLPTLNEQEGETPK 174
Query: 488 IKCLDLIKDENLKK---SLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKE 544
+ + +K E +K+ + +QK +VA + K ++ + +P E+ KE
Sbjct: 175 EEAQEEVKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSV---EPPKDEEVSKE 231
Query: 545 LELQKELQEYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLK 604
LE Q+EL+ K E ++ + + KE + +K EE+ E +
Sbjct: 232 LETQEELE-------TPKEETQEQEPI----KEETQEIK-------------EEKQEKTQ 267
Query: 605 NIPQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKT 664
+ P + E + ++ VK ++ + N+KE QE ++ E + +E Q L+ K +T
Sbjct: 268 DSPSAQELEAMQEL-VKEIQENSNDQENKKETQETQE--NTETPQDIETQELEIPKEEET 324
Query: 665 DEERKKC-LKDLPKDLQSDILAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEE 723
E +K ++ L K+ ++ ++ ++ +D Q + EA+ ++ ++ TP+ +E
Sbjct: 325 QEVAEKTQVQGLEKEEIAETPQEKEIQETQDETPQ-ELEAQDEKLQENETPK-----DES 378
Query: 724 AKESVKAYLDC-VSQAKTEAEKKE-CEKLLTPEAKKKLEEAKKSVKAYLDCVSRARNEKE 781
+ES + D Q +T+ + E E + P K + E + + + N+ E
Sbjct: 379 MQESAQNLQDKETPQEETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNENDTE 438
Query: 782 KKECEKLLTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYLD 840
TP+ + Q + + E + L+DL K L +ES+K+ L+
Sbjct: 439 --------TPKESDIKAPQEKEESDKTSSPLELRLNLQDLLKSLN-----QESLKSLLE 484
Score = 44.3 bits (103), Expect = 3e-05
Identities = 57/245 (23%), Positives = 97/245 (39%), Gaps = 43/245 (17%)
Query: 94 RKLVDNKKPFTQQKNLDEETQELNEE--DDQEN-NEYQEETQTDLIDDETSKKTQQHSPQ 150
+KL N +NLD TQE+ E D+ EN + + + + ++E T
Sbjct: 112 KKLGSNASELEPSQNLDP-TQEILETNWDELENLGDLEALAKEEPNNEEQLLPTLNEQEG 170
Query: 151 DLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNFDGDKSEETQTQMDSEGNETSES 210
+ EEA E E + + +E + E + + K +ETQ ++ +E
Sbjct: 171 ETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEE--- 227
Query: 211 SNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQEETQTDLIDDET 270
K + +L K+ +Q+ + EETQE+ EE QE+TQ
Sbjct: 228 -----VSKELETQEELETPKEETQEQEPIKEETQEIKEEK-------QEKTQ-------- 267
Query: 271 SKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNFDGDKSEEITDDS 330
+ A E + L+KE +E+S+ +N ETQ + ++ E D
Sbjct: 268 ------------DSPSAQELEAMQELVKEIQENSNDQ-ENKKETQ---ETQENTETPQDI 311
Query: 331 NDQEI 335
QE+
Sbjct: 312 ETQEL 316
Score = 44.3 bits (103), Expect = 3e-05
Identities = 81/397 (20%), Positives = 169/397 (42%), Gaps = 61/397 (15%)
Query: 893 EKLLTPEARKLLEEXAKESVKAYLDCVSQAKNEAE-----KKECEKLLT----LESKKKL 943
EKLL ++KL E + E+ Y + ++ K + E EC + L LE K+ +
Sbjct: 13 EKLLESVSKKL--ELSIENFNHYQELSARLKGDPEWLLIADDECLEKLDQVDWLELKETI 70
Query: 944 EEAKKSVKAYLDCVSQAKTEAEK-------------------KECEKLLTPEAKKLLEQQ 984
+ K SV C+ + EA+ K +K L A +L Q
Sbjct: 71 SQNKNSV-----CMYKKGNEAQPFLEGFEMKIKKPFLPTEMLKVLQKKLGSNASELEPSQ 125
Query: 985 ALDCLKNA-KTEADKKRCVKDLPKDLQKKVLAKESLKAYKDCVSKARNEKEKKEC-EKLL 1042
LD + +T D+ + DL +++ +E L +++ E K+E E++
Sbjct: 126 NLDPTQEILETNWDELENLGDLEALAKEEPNNEEQLLP---TLNEQEGETPKEEAQEEVK 182
Query: 1043 TPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTP----------EARKLLEEAK 1092
E K++ EE K+ K + Q + + + E + + P E ++ LE K
Sbjct: 183 KEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELETPK 242
Query: 1093 ESVKAYKDCVSKARNEKEKKECEKLLTPEAKKL--LEQQVLDCLKNAKTEADKKRCVK-- 1148
E + + + + KE+K+ + +P A++L +++ V + +N+ + +KK +
Sbjct: 243 EETQEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQETQ 302
Query: 1149 ---DLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLE---EAKESL 1202
+ P+D++ + L + + + + + +KE E TP+ K++ E E + L
Sbjct: 303 ENTETPQDIETQELEIPKEEETQEVAEKTQVQGLEKE-EIAETPQEKEIQETQDETPQEL 361
Query: 1203 KAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKK 1239
+A + L + ++ E + ++ ++E ++
Sbjct: 362 EAQDEKLQENETPKDESMQESAQNLQDKETPQEETQE 398
Score = 40.4 bits (93), Expect = 4e-04
Identities = 85/438 (19%), Positives = 174/438 (39%), Gaps = 76/438 (17%)
Query: 224 RKLVDNKKPFTQQKNLDEETQELNEE--DDQEN----------NEYQEETQTDLIDDETS 271
+KL N +NLD TQE+ E D+ EN EE ++++
Sbjct: 112 KKLGSNASELEPSQNLDP-TQEILETNWDELENLGDLEALAKEEPNNEEQLLPTLNEQEG 170
Query: 272 KKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPT----ETQTNFDGDKSEEIT 327
+ ++ + +++ EE E E K+ +E +++ D ETQ + + K EE++
Sbjct: 171 ETPKEEAQEEVKKEEVKEMQE-EVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVS 229
Query: 328 DDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFSKDRNLYVND 387
+ QE ++ K++ P+++++ +++ D
Sbjct: 230 KELETQEELETPKEE---------------------TQEQEPIKEETQEIKEEKQEKTQD 268
Query: 388 -----EIQIRQEYNRLLKERNEKGN-MIDKNLFFNDDPNRTLYNYLNIAEIE---DKNPL 438
E++ QE L+KE E N +K N + E+E ++
Sbjct: 269 SPSAQELEAMQE---LVKEIQENSNDQENKKETQETQENTETPQDIETQELEIPKEEETQ 325
Query: 439 RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN 498
+ G EE + ++K++Q+ +T + + ++E+++ + KDE+
Sbjct: 326 EVAEKTQVQGLEKEEIAETPQEKEIQETQDETPQ-------ELEAQDEKLQENETPKDES 378
Query: 499 LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELELQKELQEYKDCI 558
+++S N Q + + +T E+ E ++ I +P + + +EL L E I
Sbjct: 379 MQESAQNLQDKETPQE-----ETQEDHYESIEDIPEPVMAKAMGEELPF---LNEAVAKI 430
Query: 559 KNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEER---NECLKNIPQDLQKELL 615
N + + E KE+ + Q+ + K + E R + LK++ Q+ K LL
Sbjct: 431 PNNENDTE-------TPKESDIKAPQEKEESDKTSSPLELRLNLQDLLKSLNQESLKSLL 483
Query: 616 ADMSVKAYKDCVSKARNE 633
+ ++ K NE
Sbjct: 484 ENKTLSIKITLEDKKPNE 501
Score = 35.4 bits (80), Expect = 0.014
Identities = 108/510 (21%), Positives = 208/510 (40%), Gaps = 89/510 (17%)
Query: 1184 EKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQ----EVKK 1239
EKLL +KKL E + E+ Y++ ++ + + E + E + L+Q E+K+
Sbjct: 13 EKLLESVSKKL-ELSIENFNHYQELSARLKGDPEWLL---IADDECLEKLDQVDWLELKE 68
Query: 1240 SIKAYLD--CVSRARNEK-------EKKECEKLLTPEARKFLAKQV---LNCLEKAGNEE 1287
+I + C+ + NE E K + L E K L K++ + LE + N +
Sbjct: 69 TISQNKNSVCMYKKGNEAQPFLEGFEMKIKKPFLPTEMLKVLQKKLGSNASELEPSQNLD 128
Query: 1288 ERKACLKNLPKDLQE----NILAKESLKAYKDCL---SQARNEEERRACEKLLTPEARKL 1340
+ L+ +L+ LAKE + L ++ E + ++ + E K
Sbjct: 129 PTQEILETNWDELENLGDLEALAKEEPNNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKE 188
Query: 1341 LEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKEL--QQKDKAIKDCLKNA 1398
+++EVK+ K + + + + E + + P + ++KEL Q++ + K+ +
Sbjct: 189 MQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELETPKEETQEQ 248
Query: 1399 DPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQNLYSDLIQEIQ 1458
+P EE + +E +EK ++ Q L + +QE+
Sbjct: 249 EP-------------IKEETQEIKEEKQEKT-----------QDSPSAQEL--EAMQELV 282
Query: 1459 NKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCL----EGLSDSERALILGIKR 1514
+ +N +Q +K E E +N + P D E E + E +E+ + G+++
Sbjct: 283 KEIQENSNDQENKKE----TQETQENTETPQDIETQELEIPKEEETQEVAEKTQVQGLEK 338
Query: 1515 QADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYA 1574
+E+ + ++T D P + + + N T D S +
Sbjct: 339 --EEIAETPQEKEIQETQDE--------TPQELEAQDEKLQENETPKDESMQESAQNLQD 388
Query: 1575 SIEPDIAKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKAENNKIDKDVA 1634
P Q + ++I+D E +AKA+G +E + A AK NN+ D
Sbjct: 389 KETPQEETQEDHYESIEDIP-EPVMAKAMG-------EELPFLNEAVAKIPNNEND---T 437
Query: 1635 ETAKNISEIALKNKKEKSGEFVDENGNPID 1664
ET K S+I +KE+S D+ +P++
Sbjct: 438 ETPKE-SDIKAPQEKEES----DKTSSPLE 462
Score = 32.0 bits (71), Expect = 0.16
Identities = 27/131 (20%), Positives = 58/131 (43%), Gaps = 11/131 (8%)
Query: 1558 ATNVDADKIASDNPIYASIEP----DIAKQYETEKTIKDKNLEAKLAKALGGNKKDDDKE 1613
A N ++ D+ S+EP +++K+ ET++ ++ E + + + ++ +E
Sbjct: 202 AENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELETPKEETQEQEPIKEETQEIKEE 261
Query: 1614 KSKKSTAEAKAENNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAE--- 1670
K +K+ A+ + + E K I E + + +K + EN D + E
Sbjct: 262 KQEKTQDSPSAQELEA---MQELVKEIQENSNDQENKKETQETQENTETPQDIETQELEI 318
Query: 1671 -KQDETSPVKQ 1680
K++ET V +
Sbjct: 319 PKEEETQEVAE 329
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 53.1 bits (126), Expect = 7e-08
Identities = 68/277 (24%), Positives = 111/277 (39%), Gaps = 15/277 (5%)
Query: 972 LLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESLK---AYKDCVSK 1028
+L+ E+ ++LE++ LD KT V+ + K+ + K AY D + K
Sbjct: 179 ILSCESFEILEKRELDTSGVTKTSTPFFSRVEGIDAGTLGKLFSGSQSKNYFAYYDALVK 238
Query: 1029 ARNEKE---KKECEKLLTPEAKK-LLEEAKKSVKAYLDCVSQAKTEAEK---KECEKLLT 1081
KE +K+ E++ E K+ + +EA K K A T EK K K
Sbjct: 239 KEKRKEVRIEKKEERIDARENKREIKQEAIKEPKKANQGTENAPTLEEKNYQKAERKFDA 298
Query: 1082 PEARKLLEEAKESVKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEQQVLDCLKNAKTEA 1141
E R+ + ++ KA K + EKE E ++ T E +K LE + NAK
Sbjct: 299 KEERRRSRDERKKTKATKKAMEFEEREKEHDERDEKETEERRKALEMDKGNEKVNAKENE 358
Query: 1142 DKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKES 1201
+ + K++ + S + KKE K + E K+ L+E K+
Sbjct: 359 REINQESANEPSSENNATLKDT-----ENTSVLKESAAKKEAPKPSSKEEKRRLKEEKKK 413
Query: 1202 LKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVK 1238
KA + + E + ++ E RK LE K
Sbjct: 414 AKAEQRAREFEQRAREHQERDEKELEERRKALEMNKK 450
Score = 52.0 bits (123), Expect = 1e-07
Identities = 67/278 (24%), Positives = 112/278 (40%), Gaps = 16/278 (5%)
Query: 642 LLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLK---AYKDCV-- 696
+L+ E+ + LE++ LD KT ++ + + + K AY D +
Sbjct: 179 ILSCESFEILEKRELDTSGVTKTSTPFFSRVEGIDAGTLGKLFSGSQSKNYFAYYDALVK 238
Query: 697 --SQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEK---KECEKLL 751
+ + EKKE E++ E K+ +++EA + K A T EK K K
Sbjct: 239 KEKRKEVRIEKKE-ERIDARENKREIKQEAIKEPKKANQGTENAPTLEEKNYQKAERKFD 297
Query: 752 TPEAKKKLEEAKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTD 811
E +++ + +K KA + EKE E ++ T E +K LE + NAK +
Sbjct: 298 AKEERRRSRDERKKTKATKKAMEFEEREKEHDERDEKETEERRKALEMDKGNEKVNAKEN 357
Query: 812 KERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKK 871
+ + K++ + S K A KKE K + E ++ L+E KK
Sbjct: 358 EREINQESANEPSSENNATLKDT-----ENTSVLKESAAKKEAPKPSSKEEKRRLKEEKK 412
Query: 872 SVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEXAK 909
KA + E +E ++ E RK LE K
Sbjct: 413 KAKAEQRAREFEQRAREHQERDEKELEERRKALEMNKK 450
Score = 51.6 bits (122), Expect = 2e-07
Identities = 63/235 (26%), Positives = 102/235 (42%), Gaps = 22/235 (9%)
Query: 534 DPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNA 593
D ++++ RKE+ ++K K + +A +NK + + +EAI+ K+ A +NA
Sbjct: 234 DALVKKEKRKEVRIEK---------KEERIDARENK--REIKQEAIKEPKK-ANQGTENA 281
Query: 594 KTDEERNECLKNIPQDLQKELLADMS----VKAYKDCVSKARNEKEKQECEKLLTPEARK 649
T EE+N D ++E KA K + EKE E ++ T E RK
Sbjct: 282 PTLEEKNYQKAERKFDAKEERRRSRDERKKTKATKKAMEFEEREKEHDERDEKETEERRK 341
Query: 650 KLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKTEAEKKECE 709
LE + NAK +E +++ K++ + S K A KKE
Sbjct: 342 ALEMDKGNEKVNAKENEREINQESANEPSSENNATLKDT-----ENTSVLKESAAKKEAP 396
Query: 710 KLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKK 764
K + E K+ L+EE K+ KA + E +E ++ E +K LE KK
Sbjct: 397 KPSSKEEKRRLKEE-KKKAKAEQRAREFEQRAREHQERDEKELEERRKALEMNKK 450
Score = 35.4 bits (80), Expect = 0.014
Identities = 40/204 (19%), Positives = 83/204 (40%), Gaps = 20/204 (9%)
Query: 122 QENNEYQEETQTDLIDDETSKKT--QQHSPQDLSNEEATEANHFENLLKESKESSDHHLD 179
++ E + E + + ID +K+ Q+ + + TE + L +++ + ++ D
Sbjct: 240 EKRKEVRIEKKEERIDARENKREIKQEAIKEPKKANQGTE--NAPTLEEKNYQKAERKFD 297
Query: 180 NPTETQTNFDG-DKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKN 238
E + + D K++ T+ M+ E E + +KA ++ + ++N
Sbjct: 298 AKEERRRSRDERKKTKATKKAMEFEEREKEHDERDEKETEERRKALEMDKGNEKVNAKEN 357
Query: 239 LDEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEE------------ 286
E QE E ENN ++T+ + E++ K + +P+ S EE
Sbjct: 358 EREINQESANEPSSENNATLKDTENTSVLKESAAK--KEAPKPSSKEEKRRLKEEKKKAK 415
Query: 287 -ATEANHFENLLKESKESSDHHLD 309
A FE +E +E + L+
Sbjct: 416 AEQRAREFEQRAREHQERDEKELE 439
Score = 33.9 bits (76), Expect = 0.041
Identities = 28/104 (26%), Positives = 49/104 (46%), Gaps = 5/104 (4%)
Query: 1577 EPDIAKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKAENNKIDKDVAET 1636
E D + ETE+ K ++ K N K++++E +++S E +ENN KD T
Sbjct: 327 EHDERDEKETEERRKALEMDKGNEKV---NAKENEREINQESANEPSSENNATLKDTENT 383
Query: 1637 AKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQ 1680
+ + E A K + K +E ++KKKA+ + +Q
Sbjct: 384 SV-LKESAAKKEAPKPSS-KEEKRRLKEEKKKAKAEQRAREFEQ 425
Score = 33.5 bits (75), Expect = 0.054
Identities = 37/191 (19%), Positives = 75/191 (38%), Gaps = 17/191 (8%)
Query: 3 EENDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDG-D 61
E D E ++ +Q++ ++ N L +++ + ++ D E + D
Sbjct: 252 ERIDARENKREIKQEAIKEPKKANQGTENA-PTLEEKNYQKAERKFDAKEERRRSRDERK 310
Query: 62 KSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEDD 121
K++ T+ M+ E E + +KA ++ + ++N E QE E
Sbjct: 311 KTKATKKAMEFEEREKEHDERDEKETEERRKALEMDKGNEKVNAKENEREINQESANEPS 370
Query: 122 QENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEE-------------ATEANHFENLLK 168
ENN ++T+ + E++ K + +P+ S EE A FE +
Sbjct: 371 SENNATLKDTENTSVLKESAAK--KEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAR 428
Query: 169 ESKESSDHHLD 179
E +E + L+
Sbjct: 429 EHQERDEKELE 439
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 52.4 bits (124), Expect = 1e-07
Identities = 90/400 (22%), Positives = 177/400 (43%), Gaps = 53/400 (13%)
Query: 928 KKECEKLLTLESKK----KLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQ 983
KK E L +ESKK K E K +A L ++Q K E E+K+ K E+
Sbjct: 114 KKTNENLEKIESKKESINKENEKKIKNEASLQVLTQ-KKEKEEKDFTDSCWKNLYKKNEE 172
Query: 984 QALDCLKNAK-TEADKKRCVKDLPKDL--QKKVLAKESLKAYKDCV-SKARNEKEKKECE 1039
+ + L+ K E K + +K+ D Q +++ E LK + V SK + E EC+
Sbjct: 173 EFKEILEGFKRKEKFKGKILKEFENDKHNQSEIVGLEKLKEKIEIVFSKNQTELALLECD 232
Query: 1040 -------KLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEK--LLTPEARK--LL 1088
+ + +K++ ++ + +S A+ +E K + P +K +
Sbjct: 233 LTDFDSIENHSIWEQKIVGSGDVAIANLIKTLSNEDWVAQGREYVKDNSICPFCQKETIT 292
Query: 1089 EEAKESVKAYKDCVSKARNE--KEKKECEKLLTPEAKKLLEQQVLDCLKNAKTEADKKRC 1146
EE K+ +++Y D + + K+ KE T EA + L++ + N++T+ D +
Sbjct: 293 EEFKKQLESYFDTSYQESTDTIKKMKEDYTNKTDEALERLDEIIKTEQNNSQTKLDTEN- 351
Query: 1147 VKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYK 1206
+K + + L+ K+ A + + +D S+ + K + K K L+++A E + +
Sbjct: 352 LKRIIETLRSKIKANQ--QKMID-KSKEMSRNFKLDSNKNEIDAIKDLIKKANEQITNHN 408
Query: 1207 DCLSQARNEEERRACEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNEKEKKECEKLLTP 1266
+ + E+++++C++ + K L E K I+ Y KK C
Sbjct: 409 ETIKDI--EKQKKSCKE----QTWKFLINEFKSDIQEY-----------NKKYCG----- 446
Query: 1267 EARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENILA 1306
L K + N ++ +E+ L+N K+L++N+++
Sbjct: 447 -----LEKGINNLEKEISENQEKVKKLENEIKELEKNMVS 481
Score = 49.3 bits (116), Expect = 1e-06
Identities = 90/374 (24%), Positives = 163/374 (43%), Gaps = 39/374 (10%)
Query: 882 QAKTEAEKKECEKLLTPEAR-KLLEEXAKESVKAYLDCVSQAKNEAEKKECEKLLTLESK 940
++K E+ KE EK + EA ++L + ++ K + D + + ++E +++L +
Sbjct: 124 ESKKESINKENEKKIKNEASLQVLTQKKEKEEKDFTDSCWKNLYKKNEEEFKEILEGFKR 183
Query: 941 KKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDC-------LKNAK 993
K+ + K + D +Q++ +K EK+ +K E L+C ++N
Sbjct: 184 KEKFKGKILKEFENDKHNQSEIVGLEKLKEKIEIVFSKNQTELALLECDLTDFDSIENHS 243
Query: 994 TEADKKRCVKDLPKDLQKKVLAKESLKAYKDCVSKARN-EKEKKECEKLLTPEAKKLLEE 1052
K D+ K L+ E D V++ R K+ C + + + EE
Sbjct: 244 IWEQKIVGSGDVAIANLIKTLSNE------DWVAQGREYVKDNSICPFC---QKETITEE 294
Query: 1053 AKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESVKA-YKDCVSKARNEKEK 1111
KK +++Y D Q T+ KK E T + + LE E +K + +K E K
Sbjct: 295 FKKQLESYFDTSYQESTDTIKKMKED-YTNKTDEALERLDEIIKTEQNNSQTKLDTENLK 353
Query: 1112 KECEKL---LTPEAKKLLEQQVLDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYL 1168
+ E L + +K++++ + +N K +++K D KDL KK A E + +
Sbjct: 354 RIIETLRSKIKANQQKMIDKS-KEMSRNFKLDSNKNEI--DAIKDLIKK--ANEQITNHN 408
Query: 1169 DCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAY--KDC-LSQARNEEERRACEKLL 1225
+ + EK+KK C++ K L+ E K ++ Y K C L + N E+ E
Sbjct: 409 ETIKDI--EKQKKSCKE---QTWKFLINEFKSDIQEYNKKYCGLEKGINNLEKEISE--- 460
Query: 1226 TPEARKLLEQEVKK 1239
E K LE E+K+
Sbjct: 461 NQEKVKKLENEIKE 474
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 49.7 bits (117), Expect = 7e-07
Identities = 190/867 (21%), Positives = 308/867 (34%), Gaps = 178/867 (20%)
Query: 1007 KDLQKKVLAKESL---KAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDC 1063
+++Q KV E L A D +SK EK + E +E+ +K KAYLD
Sbjct: 395 EEIQNKVDFMEFLAQNNAKLDNLSKKEKEKFQNE------------IEDFQKDSKAYLDA 442
Query: 1064 VSQAKTEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSKARNEKEKKECEKLLTPEAK 1123
+ K+ +K L A E ++K Y KA + + K + L +
Sbjct: 443 LGNDHIAFVSKKDKKHLALVAEFGNGELSYTLKDYGKKADKALDREAKTTLQGSLKHDGV 502
Query: 1124 KLLEQQVLDCLKNAKTEADK----KRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKE 1179
++ NA DK V L K + L S R + E
Sbjct: 503 MFVDYSNFK-YTNASKSPDKGVGATNGVSHLEAGFSKVAVFNLPNLNNLAITSVVRQDLE 561
Query: 1180 KKECEKLLTP-EAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVK 1238
K K L+P EA KL+ K+ L + K+ + +A N
Sbjct: 562 DKLIAKGLSPQEANKLV---KDFLSSNKELVGKALN------------------------ 594
Query: 1239 KSIKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPK 1298
+ V+ A+N E KQ LEK+ + ER L K
Sbjct: 595 -----FNKAVAEAKNTGNYDE-------------VKQAQKDLEKSLKKRER------LEK 630
Query: 1299 DLQENILAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSR 1358
D+ +N+ +K K + SQA ++++ E L+ +E + +A ++
Sbjct: 631 DVAKNLESKSGNKNKMEAKSQANSQKD----------EIFALINKEANRDARA----IAY 676
Query: 1359 ARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEK 1418
A+N K K + L+ +L+ +K +KD K+ D K D EE
Sbjct: 677 AQNLKGIK-----------RELSDKLENINKDLKDFSKSFDEFKNG---KNKDFSKAEET 722
Query: 1419 LKYLQEAREKAVADCLAMAKTDEEKRKCQNLYSDLIQEIQNKRTQNKQNQLSKTERLHQA 1478
LK A + +V D + E K +NL + L N+ K SK + QA
Sbjct: 723 LK----ALKGSVKD---LGINPEWISKVENLNAAL-----NEFKNGKNKDFSK---VTQA 767
Query: 1479 SECLDN-LDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAA 1537
L+N + D + I ++ L+ + + + + + + L + K F
Sbjct: 768 KSDLENSIKDVIINQKITDKVDNLNQA-----VSVAKATGDFSGVEQALADLKNFSKEQL 822
Query: 1538 KGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDIAKQYETEKTIKDKNLEA 1597
DF G + A + + N + + ++K + K K L A
Sbjct: 823 AQQAQKNEDFNTGKNSALYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDIK----KELNA 878
Query: 1598 KLAKALGGNKKDDDKEKSKKSTAEAKAENNKIDK---------DVAETAK---------- 1638
KL N + T AK KID+ DV + A
Sbjct: 879 KLGNFNNNNNNGLENSTEPIYTQVAKKVKAKIDRLDQIASGLGDVGQAASFLLKRHDKVD 938
Query: 1639 NISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPI 1698
++S++ L E +D+ G P K+ +K D+ S V G S
Sbjct: 939 DLSKVGLSANHEPIYATIDDLGGPF-PLKRHDKVDDLSKV-----GLSR----------- 981
Query: 1699 EITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTK--VYGNY--QSVKGGTPIMTR 1754
E LT K+D L VS A N++ + L TK V Y + K T + +
Sbjct: 982 EQKLTQKID-NLNQAVSEAKASHFDNLDQMIDKLKDSTKKNVVNLYVESAKKVPTSLSAK 1040
Query: 1755 LMIVFTKAIT--PDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQ 1812
L T + T V N +A GML + N+ ++K + ++A V S
Sbjct: 1041 LDNYATNSHTRINSNVKNGTINEKATGMLTQK------NSEWLKLVNDKIVAHNVGS--- 1091
Query: 1813 TAPIIALDKLIGLGKGRSERTPEFNYA 1839
AP+ A DK+ K + + F ++
Sbjct: 1092 -APLSAYDKIGFNQKNMKDYSDSFKFS 1117
Score = 42.7 bits (99), Expect = 9e-05
Identities = 113/496 (22%), Positives = 179/496 (35%), Gaps = 84/496 (16%)
Query: 572 KGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSKAR 631
KG++ + K+ L + A + EE + + E LA + K D +SK
Sbjct: 370 KGINNPSFYLYKEDQLTGSQRALSQEEIQNKVDFM------EFLAQNNAKL--DNLSKKE 421
Query: 632 NEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKA 691
EK + E E +K + LD L N KK K L L ++ E
Sbjct: 422 KEKFQNEIEDF------QKDSKAYLDALGNDHIAFVSKKDKKHLA--LVAEFGNGELSYT 473
Query: 692 YKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLL 751
KD K+ +K L EAK L+ K ++D + T A K + +
Sbjct: 474 LKDY---------GKKADKALDREAKTTLQGSLKHDGVMFVDYSNFKYTNASKSPDKGVG 524
Query: 752 TPEAKKKLEEAKKSVKAY-------LDCVSRARNEKEKKECEKLLTP-EAKKLLEQ---- 799
LE V + L S R + E K K L+P EA KL++
Sbjct: 525 ATNGVSHLEAGFSKVAVFNLPNLNNLAITSVVRQDLEDKLIAKGLSPQEANKLVKDFLSS 584
Query: 800 ------------QALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKT 847
+A+ KN E K+ KDL K L+K+ ++ V L+ S K
Sbjct: 585 NKELVGKALNFNKAVAEAKNTGNYDEVKQAQKDLEKSLKKRERLEKDVAKNLESKSGNKN 644
Query: 848 EAEKKECEKLLTPEARKLL-EEAKKSVK--AYLDCVSQAKTEAEKKECEKLLTPEARKLL 904
+ E K E L+ +EA + + AY + K E K K L
Sbjct: 645 KMEAKSQANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDK------LENINKDL 698
Query: 905 EEXAKESVKAYLDCVSQAKNEAEKKECEKLLTLESKKK------------------LEEA 946
++ +K D KN+ K E L L+ K L E
Sbjct: 699 KDFSKS-----FDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEF 753
Query: 947 KKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE--QQALDCLKNAKTEADKKRCVKD 1004
K V+QAK++ E + ++ + ++ QA+ K + ++ + D
Sbjct: 754 KNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSVAKATGDFSGVEQALAD 813
Query: 1005 LPKDLQKKVLAKESLK 1020
L K+ K+ LA+++ K
Sbjct: 814 L-KNFSKEQLAQQAQK 828
Score = 37.0 bits (84), Expect = 0.005
Identities = 101/441 (22%), Positives = 166/441 (36%), Gaps = 72/441 (16%)
Query: 893 EKLLTPEARKLLEEXAKESVKAYLDCVSQAKNEAE---KKECEKLLTLESKKKLEEAKKS 949
E LT R L +E + V +++ ++Q + + KKE EK + ++E+ +K
Sbjct: 382 EDQLTGSQRALSQEEIQNKVD-FMEFLAQNNAKLDNLSKKEKEKF-----QNEIEDFQKD 435
Query: 950 VKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDL 1009
KAYLD + K+ +K L A+ + LK+ +ADK D
Sbjct: 436 SKAYLDALGNDHIAFVSKKDKKHLALVAE-FGNGELSYTLKDYGKKADKAL-------DR 487
Query: 1010 QKKVLAKESLK----AYKDCVSKARNEKEKKECEKLLTPEAKKLLEEAKKSVKAY----- 1060
+ K + SLK + D + K + + LE V +
Sbjct: 488 EAKTTLQGSLKHDGVMFVDYSNFKYTNASKSPDKGVGATNGVSHLEAGFSKVAVFNLPNL 547
Query: 1061 --LDCVSQAKTEAEKKECEKLLTP-EARKLLEEAKESVKAYKDCVSKARNEKEKKECEKL 1117
L S + + E K K L+P EA KL+ K+ + + K+ V KA N +
Sbjct: 548 NNLAITSVVRQDLEDKLIAKGLSPQEANKLV---KDFLSSNKELVGKALNFNKA------ 598
Query: 1118 LTPEAKKLLEQQVLDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNE 1177
EAK N + K+ KDL K L+K+ ++ V L+ S +N+
Sbjct: 599 -VAEAK------------NTGNYDEVKQAQKDLEKSLKKRERLEKDVAKNLESKSGNKNK 645
Query: 1178 KEKKECEKLLTPEAKKLL-EEAKESLKAYKDCLSQARNEE--ERRACEKLLTPEARKLLE 1234
E K E L+ +EA +A ++ A+N + +R +KL
Sbjct: 646 MEAKSQANSQKDEIFALINKEANRDARA----IAYAQNLKGIKRELSDKL---------- 691
Query: 1235 QEVKKSIKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLK 1294
+ + K +K + +N K K + T +A K K + E E A L
Sbjct: 692 ENINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALN 751
Query: 1295 NLP----KDLQENILAKESLK 1311
KD + AK L+
Sbjct: 752 EFKNGKNKDFSKVTQAKSDLE 772
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 47.8 bits (112), Expect = 3e-06
Identities = 40/191 (20%), Positives = 94/191 (48%), Gaps = 18/191 (9%)
Query: 1345 VKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLA--KELQQKDKAIKDCLKNADPND 1402
V +++ ++ +++R ++K EK + + ++ + K L+QK++A+K+ K
Sbjct: 20 VSEALYKQIESENQSRFLAQQKAFEKEVNEKRAQYQSYFKNLEQKEEALKERAKEQQAQF 79
Query: 1403 RAAIMKCLDGLSDEEKLKYLQEAREKAVADC-----LAMAKTDEEKRKCQNLYSDLIQEI 1457
A+ + +E+ K ++EAR+ A + L + DE+ ++ Q L+ +
Sbjct: 80 DEAVKQASALALQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIE 139
Query: 1458 QNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQAD 1517
+ KR N+ K E + +E L+ ++E IE+ L ++ L K+Q +
Sbjct: 140 RLKRENNEAESRLKAENEKKLNEKLE-----LEREKIEKALHEKNE------LKFKQQEE 188
Query: 1518 EVDLIYSDLRN 1528
+++++ ++L+N
Sbjct: 189 QLEMLRNELKN 199
Score = 40.8 bits (94), Expect = 3e-04
Identities = 70/297 (23%), Positives = 123/297 (40%), Gaps = 55/297 (18%)
Query: 1010 QKKVLAKESLKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKT 1069
Q+K KE + S +N ++K+E L E AK+ + + V QA
Sbjct: 39 QQKAFEKEVNEKRAQYQSYFKNLEQKEEA----------LKERAKEQQAQFDEAVKQASA 88
Query: 1070 EAEKKECEKLLTPEARK--LLEEAK--ESVKAYKDCVSKARNEKEKKECEKLLTPEAKKL 1125
A + E K++ EARK LE+ K E ++ D SK E +KE E
Sbjct: 89 LALQDERAKII-EEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAE---------- 137
Query: 1126 LEQQVLDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEK 1185
++ LK EA+ + ++ K +K L +E ++ L +NE + K+ E+
Sbjct: 138 -----IERLKRENNEAESRLKAENEKKLNEKLELEREKIEKAL----HEKNELKFKQQEE 188
Query: 1186 LLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSIKAYL 1245
L + L E K + + + Q + E + A E+ L + +E+KK +
Sbjct: 189 QL----EMLRNELKNAQRKAELSSQQFQGEVQELAIEEFLRQKFPLDSVEEIKKGQRGG- 243
Query: 1246 DCVSRARNEKEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQE 1302
DC+ + + +E + C K+ E +E +KA ++ L D++E
Sbjct: 244 DCI-QVVHTREFQNCGKIY---------------YESKRTKEFQKAWVEKLKSDMRE 284
Score = 39.7 bits (91), Expect = 8e-04
Identities = 69/281 (24%), Positives = 115/281 (40%), Gaps = 42/281 (14%)
Query: 826 QKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKT 885
Q+K KE + S K +K+E K E + +EA K QA
Sbjct: 39 QQKAFEKEVNEKRAQYQSYFKNLEQKEEALKERAKEQQAQFDEAVK----------QASA 88
Query: 886 EAEKKECEKLLTPEARK---LLEEXAKESVKAYLDCVSQAKNEAEKKECEKLLTLESKKK 942
A + E K++ EARK L ++ E ++ LD S+ E +KE E K++
Sbjct: 89 LALQDERAKII-EEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAE---IERLKRE 144
Query: 943 LEEAKKSVKAYLDCVSQAKTEAEKKECEKLL--TPEAKKLLEQQALDCLKNAKTEADKKR 1000
EA+ +KA + K E E+++ EK L E K +++ L+ L+N A +K
Sbjct: 145 NNEAESRLKAENEKKLNEKLELEREKIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKA 204
Query: 1001 CVKDLPKDLQKKVLAKESLKAYK----------------DCVSKARNEKEKKECEKLL-- 1042
+ + + LA E K DC+ + + +E + C K+
Sbjct: 205 ELSSQQFQGEVQELAIEEFLRQKFPLDSVEEIKKGQRGGDCI-QVVHTREFQNCGKIYYE 263
Query: 1043 ---TPEAKKL-LEEAKKSVKAYLDCVSQAKTEAEKKECEKL 1079
T E +K +E+ K ++ V +EA KE E++
Sbjct: 264 SKRTKEFQKAWVEKLKSDMREIGADVGVIVSEALPKEMERM 304
Score = 37.0 bits (84), Expect = 0.005
Identities = 56/239 (23%), Positives = 98/239 (40%), Gaps = 12/239 (5%)
Query: 1155 QKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARN 1214
Q+K KE + S +N ++K+E K E + +EA + A +A+
Sbjct: 39 QQKAFEKEVNEKRAQYQSYFKNLEQKEEALKERAKEQQAQFDEAVKQASALALQDERAKI 98
Query: 1215 EEERRACEKLLTPEARKLLEQEVKKSIKAYLDCVSR----ARNEKEKKECEKLLTPEARK 1270
EE R L + +LL++E+ + K + + R ++E E E L E K
Sbjct: 99 IEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEK 158
Query: 1271 FLAKQVLNCLEKAGNEEERKACLKNLPKDLQENILAKESLKAYKDC---LSQARNEEERR 1327
L +++ EK K LK ++ Q +L E A + Q + E +
Sbjct: 159 KLNEKLELEREKIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQEL 218
Query: 1328 ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQ 1386
A E+ L + +E+KK + DC+ + + +E + C K+ R KE Q+
Sbjct: 219 AIEEFLRQKFPLDSVEEIKKGQRGG-DCI-QVVHTREFQNCGKIYYESKR---TKEFQK 272
Score = 36.6 bits (83), Expect = 0.006
Identities = 85/359 (23%), Positives = 143/359 (39%), Gaps = 64/359 (17%)
Query: 663 KTDEERKKCLKDLPKDLQS---DILAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKL 719
K E++++ LK+ K+ Q+ + + + S A +D +AK E ++ L + +L
Sbjct: 59 KNLEQKEEALKERAKEQQAQFDEAVKQASALALQD--ERAKIIEEARKNAFLEQQKGLEL 116
Query: 720 LEEEAKESVKAYLDCVSQAKTEAEK-----KECEKLLTPEAKKKLEEAKKSVKAYLDCVS 774
L++E E K + + Q + E E+ E E L E +KKL E
Sbjct: 117 LQKELDEKSKQVQE-LHQKEAEIERLKRENNEAESRLKAENEKKLNE------------- 162
Query: 775 RARNEKEKKECEKLL--TPEAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAK 832
+ E E+++ EK L E K +++ L+ L+N + +RK L + + LA
Sbjct: 163 --KLELEREKIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAI 220
Query: 833 ESV---KAYLDCVSQAKTEAEKKEC-----------------EKLLTPEARKL-LEEAKK 871
E K LD V + K +C E T E +K +E+ K
Sbjct: 221 EEFLRQKFPLDSVEEIKKGQRGGDCIQVVHTREFQNCGKIYYESKRTKEFQKAWVEKLKS 280
Query: 872 SVKAYLDCVSQAKTEAEKKECEKL--------LTPEARKLLEEXAKESVKAYLDCVSQAK 923
++ V +EA KE E++ + E K L +E V VS AK
Sbjct: 281 DMREIGADVGVIVSEALPKEMERMGLFEGVWVCSFEEFKGLSAVLREGVIQ----VSLAK 336
Query: 924 NEAEKKECEKLLTLESKKKLEEAKKSVKAYLDCVSQ--AKTEAEKKECEKLLTPEAKKL 980
E K +K+ L E V A ++ Q A E+EK+ ++ K++
Sbjct: 337 KSQENKG-DKVNLLYHYLTSSEFSMQVNAIIEGFEQLRADLESEKRAMARIWKSREKQI 394
Score = 35.4 bits (80), Expect = 0.014
Identities = 30/143 (20%), Positives = 61/143 (41%), Gaps = 8/143 (5%)
Query: 163 FENLLKESKESSDHHLDNPTETQTNFDGDKSEETQTQMDSEGNETSESSNGSLADKLFKK 222
FE + E + + N + + ++++E Q Q D + S + K+ ++
Sbjct: 43 FEKEVNEKRAQYQSYFKNLEQKEEALK-ERAKEQQAQFDEAVKQASALALQDERAKIIEE 101
Query: 223 ARKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQEETQTDLI---DDETSKKTQQHSP 279
ARK QQK L+ +EL+E+ Q +Q+E + + + ++E + + +
Sbjct: 102 ARK----NAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENE 157
Query: 280 QDLSNEEATEANHFENLLKESKE 302
+ L+ + E E L E E
Sbjct: 158 KKLNEKLELEREKIEKALHEKNE 180
Score = 35.4 bits (80), Expect = 0.014
Identities = 30/143 (20%), Positives = 61/143 (41%), Gaps = 8/143 (5%)
Query: 33 FENLLKESKESSDHHLDNPTETQTHFDGDKSEETQTQMDSEGNETSESSNGSLADKLFKK 92
FE + E + + N + + ++++E Q Q D + S + K+ ++
Sbjct: 43 FEKEVNEKRAQYQSYFKNLEQKEEALK-ERAKEQQAQFDEAVKQASALALQDERAKIIEE 101
Query: 93 ARKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQEETQTDLI---DDETSKKTQQHSP 149
ARK QQK L+ +EL+E+ Q +Q+E + + + ++E + + +
Sbjct: 102 ARK----NAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENE 157
Query: 150 QDLSNEEATEANHFENLLKESKE 172
+ L+ + E E L E E
Sbjct: 158 KKLNEKLELEREKIEKALHEKNE 180
Score = 35.0 bits (79), Expect = 0.019
Identities = 66/303 (21%), Positives = 128/303 (41%), Gaps = 44/303 (14%)
Query: 457 LIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCL 516
L + K + ++ + Y KN + +EE +K + K++ + +Q +AL
Sbjct: 37 LAQQKAFEKEVNEKRAQYQSYFKNLEQKEEALK--ERAKEQQAQFDEAVKQASALALQ-- 92
Query: 517 KNAKTDEERNECLKLINDPEIREKFRKELEL-QKELQEYKDCIKNAKTEAEKNKCLKGLS 575
+ER + ++ E+ +K LEL QKEL E ++ + + + LK +
Sbjct: 93 ------DERAKIIEEARKNAFLEQ-QKGLELLQKELDEKSKQVQELHQKEAEIERLKREN 145
Query: 576 KEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKEL--LADMSVKAYKDCVSKARNE 633
EA RLK A+ +++ NE L+ + ++K L ++ K ++ + RNE
Sbjct: 146 NEAESRLK---------AENEKKLNEKLELEREKIEKALHEKNELKFKQQEEQLEMLRNE 196
Query: 634 -KEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAY 692
K Q +L + + + ++++ ++ K P D +I K+ +
Sbjct: 197 LKNAQRKAELSSQQFQGEVQELAIEEFLRQK-----------FPLDSVEEI--KKGQRG- 242
Query: 693 KDCVSQAKTEAEKKECEKLL-----TPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKEC 747
DC+ T E + C K+ T E +K E+ K ++ V +EA KE
Sbjct: 243 GDCIQVVHTR-EFQNCGKIYYESKRTKEFQKAWVEKLKSDMREIGADVGVIVSEALPKEM 301
Query: 748 EKL 750
E++
Sbjct: 302 ERM 304
Score = 34.3 bits (77), Expect = 0.032
Identities = 60/272 (22%), Positives = 125/272 (45%), Gaps = 24/272 (8%)
Query: 901 RKLLEEXAKESVKAYLDCVSQAKNEAEKKECEKLLTLESKKKLEEAKKSVKAYLDCVSQA 960
+K E+ E Y S KN +K+E K E + + +EA K A +A
Sbjct: 40 QKAFEKEVNEKRAQYQ---SYFKNLEQKEEALKERAKEQQAQFDEAVKQASALALQDERA 96
Query: 961 KTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESLK 1020
K E ++ L + +LL+++ + K + K+ ++ L ++ + A+ LK
Sbjct: 97 KIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNE---AESRLK 153
Query: 1021 AYKDCVSKARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAE------KK 1074
A + + E E+++ EK L + + ++ ++ ++ + + A+ +AE +
Sbjct: 154 AENEKKLNEKLELEREKIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQG 213
Query: 1075 ECEKLLTPE--ARKLLEEAKESVKAYK---DCVSKARNEKEKKECEKLLTPEAKKLLEQQ 1129
E ++L E +K ++ E +K + DC+ + + +E + C K+ E+K+ E Q
Sbjct: 214 EVQELAIEEFLRQKFPLDSVEEIKKGQRGGDCI-QVVHTREFQNCGKIYY-ESKRTKEFQ 271
Query: 1130 V--LDCLKNAKTE--ADKKRCVKD-LPKDLQK 1156
++ LK+ E AD V + LPK++++
Sbjct: 272 KAWVEKLKSDMREIGADVGVIVSEALPKEMER 303
Score = 29.3 bits (64), Expect = 1.0
Identities = 38/208 (18%), Positives = 88/208 (42%), Gaps = 9/208 (4%)
Query: 84 SLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQEETQTDLIDDETSKK 143
++++ L+K+ +N+ F Q+ E+ E+NE+ Q + ++ Q + E +K+
Sbjct: 19 NVSEALYKQIES--ENQSRFLAQQKAFEK--EVNEKRAQYQSYFKNLEQKEEALKERAKE 74
Query: 144 TQQHSPQDLSNEEATEA-NHFENLLKESKESSDHHLDNPTETQTNFDGDKSEETQTQMDS 202
Q + + A + +++E+++++ E +KS++ Q
Sbjct: 75 QQAQFDEAVKQASALALQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQK 134
Query: 203 EGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQEETQ 262
E + A+ K + N+K +++ +++ E NE ++ E E +
Sbjct: 135 EAEIERLKRENNEAESRLKAENEKKLNEKLELEREKIEKALHEKNELKFKQQEEQLEMLR 194
Query: 263 TDLID----DETSKKTQQHSPQDLSNEE 286
+L + E S + Q Q+L+ EE
Sbjct: 195 NELKNAQRKAELSSQQFQGEVQELAIEE 222
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 47.8 bits (112), Expect = 3e-06
Identities = 85/400 (21%), Positives = 158/400 (39%), Gaps = 44/400 (11%)
Query: 937 LESKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLK-----N 991
++ KK + E K+ K + + QAK + + +TPE L + +D +K N
Sbjct: 5 VDLKKFVTELGKTQKELKNVIEQAKDIGLELKTNFKMTPEQAGKLYKYIVDGIKEQIQAN 64
Query: 992 AKTEADKKRCVKDLPKDLQKKVLAKESLKAYKDCVSKARNEKEKKECEKLLTP------- 1044
T+ K+ DL K LAK++ K K +KA+ + +K + +K P
Sbjct: 65 QPTKNPKQDNKDDLNTAATPKPLAKKASKTPKKEETKAQPKPKKTKEKKKEAPAPIIKKK 124
Query: 1045 --EAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLL-TPEARKLLEEAKESVKAYKDC 1101
E E V+ VS ++ E K++ +++ + EA L ++ + +
Sbjct: 125 EIEIVNTFENQTPLVENTPKAVSHSQIEKAKQKLQEIQKSREALNKLTQSNTNTTNNANS 184
Query: 1102 VSKARNEKE------KKECEKLLTPEAKKLLEQQVLDCLKNAKTEADKKRCVKDLPKDLQ 1155
S N K+ K+E E K+ +V+ +N +TE + + V + K Q
Sbjct: 185 ASNVSNAKKEISEVKKQEQEIKRHENIKRRTGFRVIK--RNDETENETENSVTESKKPTQ 242
Query: 1156 KKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNE 1215
S A + + + EK+K+E +K P K AK + K++K S R+
Sbjct: 243 -------SAAAIFEDIKKEWQEKDKQETKKTKKPSKPKATPTAKNN-KSHKIDFSDVRDF 294
Query: 1216 EERRACEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQ 1275
+ + + E + + L E+E+KE + + R
Sbjct: 295 ------------KGNDIYDDETDEILLFDLHEQDNLNKEEEEKEARQNINDRVRVQRKNP 342
Query: 1276 VLN-CLEKAGNEEERKACLKNLPKDLQENILAKESLKAYK 1314
+N K ++++R N K +Q I E ++ Y+
Sbjct: 343 WMNEAGIKRQSKKKRVFRNDNSQKVIQSAIAIPEEVRVYE 382
Score = 41.2 bits (95), Expect = 3e-04
Identities = 70/317 (22%), Positives = 124/317 (39%), Gaps = 43/317 (13%)
Query: 754 EAKKKLEEAKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLK-----NA 808
+ KK + E K+ K + + +A++ + + +TPE L + +D +K N
Sbjct: 6 DLKKFVTELGKTQKELKNVIEQAKDIGLELKTNFKMTPEQAGKLYKYIVDGIKEQIQANQ 65
Query: 809 KTDKERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEE 868
T ++ DL K LAK++ K KKE E P+ +K E+
Sbjct: 66 PTKNPKQDNKDDLNTAATPKPLAKKASKT------------PKKE-ETKAQPKPKKTKEK 112
Query: 869 AKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEXAKESVK-AYLDCVSQAKNEAE 927
K++ + +KKE E + T E + L E ++V + ++ Q E +
Sbjct: 113 KKEAPAPII----------KKKEIEIVNTFENQTPLVENTPKAVSHSQIEKAKQKLQEIQ 162
Query: 928 K-KECEKLLTLESKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQAL 986
K +E LT + A + VS AK E + + ++ + + +
Sbjct: 163 KSREALNKLTQSNTNTTNNANSASN-----VSNAKKEISEVKKQEQEIKRHENIKRRTGF 217
Query: 987 DCLK-NAKTEADKKRCVKDLPKDLQKKVLAKESLKAYKDCVSKARNEKEKKECEKLLTPE 1045
+K N +TE + + V + K Q E +K K EK+K+E +K P
Sbjct: 218 RVIKRNDETENETENSVTESKKPTQSAAAIFEDIK-------KEWQEKDKQETKKTKKPS 270
Query: 1046 AKKLLEEAKKSVKAYLD 1062
K AK + +D
Sbjct: 271 KPKATPTAKNNKSHKID 287
Score = 39.3 bits (90), Expect = 0.001
Identities = 61/283 (21%), Positives = 116/283 (40%), Gaps = 26/283 (9%)
Query: 546 ELQKELQEYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKN 605
EL K +E K+ I+ AK + K ++ E +L + +D +K + N+ KN
Sbjct: 13 ELGKTQKELKNVIEQAKDIGLELKTNFKMTPEQAGKLYKYIVDGIKE---QIQANQPTKN 69
Query: 606 IPQDLQKELLADMSVKAYKDCVSKA-RNEKEKQECEKLLTPEARKKLEQQVLDC--LKNA 662
QD + +L + K SK + E+ K + + T E +K+ ++ ++
Sbjct: 70 PKQDNKDDLNTAATPKPLAKKASKTPKKEETKAQPKPKKTKEKKKEAPAPIIKKKEIEIV 129
Query: 663 KTDEERKKCLKDLPKDLQSDILAKESLKAYK--------DCVSQAKTEAEKKECEKLLTP 714
T E + +++ PK + + K K + + ++Q+ T
Sbjct: 130 NTFENQTPLVENTPKAVSHSQIEKAKQKLQEIQKSREALNKLTQSNTNTTNNANSASNVS 189
Query: 715 EAKKLLEEEAKES--VKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKK---SVKAY 769
AKK + E K+ +K + + + K+ E E + + E+KK S A
Sbjct: 190 NAKKEISEVKKQEQEIKRHENIKRRTGFRVIKRNDET--ENETENSVTESKKPTQSAAAI 247
Query: 770 LDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTDK 812
+ + + EK+K+E T + KK + +A KN K+ K
Sbjct: 248 FEDIKKEWQEKDKQE-----TKKTKKPSKPKATPTAKNNKSHK 285
Score = 37.0 bits (84), Expect = 0.005
Identities = 57/310 (18%), Positives = 114/310 (36%), Gaps = 36/310 (11%)
Query: 128 QEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFENL--LKESKESSDHHLDNPTETQ 185
+EET+ +T +K ++ + +E N FEN L E+ + H Q
Sbjct: 97 KEETKAQPKPKKTKEKKKEAPAPIIKKKEIEIVNTFENQTPLVENTPKAVSHSQIEKAKQ 156
Query: 186 TNFDGDKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQE 245
+ KS E ++ T+ ++N A + +++ + KK + K + +
Sbjct: 157 KLQEIQKSREALNKLTQSNTNTTNNANS--ASNVSNAKKEISEVKKQEQEIKRHENIKRR 214
Query: 246 LNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNE-EATEANHFENLLKESKESS 304
+ N+E + ET+ + + + ++ +D+ E + + + K SK +
Sbjct: 215 TGFRVIKRNDETENETENSVTESKKPTQSAAAIFEDIKKEWQEKDKQETKKTKKPSKPKA 274
Query: 305 DHHLDNPTETQTNFD---GDKSEEITDDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSR 361
N + +F K +I DD D+ I+LF
Sbjct: 275 TPTAKNNKSHKIDFSDVRDFKGNDIYDDETDE----------------------ILLFD- 311
Query: 362 SIFHYFMPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNR 421
H L + K+ +ND +++ Q N + E K K +F ND+ +
Sbjct: 312 --LHEQDNLNKEEE--EKEARQNINDRVRV-QRKNPWMNEAGIKRQSKKKRVFRNDNSQK 366
Query: 422 TLYNYLNIAE 431
+ + + I E
Sbjct: 367 VIQSAIAIPE 376
Score = 37.0 bits (84), Expect = 0.005
Identities = 55/270 (20%), Positives = 108/270 (39%), Gaps = 50/270 (18%)
Query: 7 KLETSKKAQQDSPQDLSNEEATE-ANHFENL--LKESKESSDHHLDNPTETQTHFDGDKS 63
K + +K+ ++++P + ++ E N FEN L E+ + H Q + KS
Sbjct: 105 KPKKTKEKKKEAPAPIIKKKEIEIVNTFENQTPLVENTPKAVSHSQIEKAKQKLQEIQKS 164
Query: 64 EETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEDDQE 123
E ++ T+ ++N A + +++ + KK + K + + +
Sbjct: 165 REALNKLTQSNTNTTNNANS--ASNVSNAKKEISEVKKQEQEIKRHENIKRRTGFRVIKR 222
Query: 124 NNEYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTE 183
N+E + ET+ + E+ K TQ + A FE++ KE +E
Sbjct: 223 NDETENETENSV--TESKKPTQ------------SAAAIFEDIKKEWQEK---------- 258
Query: 184 TQTNFDGDKSEETQTQMDSEGNETSESSNGSLADKLFKKARKL-VDNKKPFTQQKNLDEE 242
DK E +T+ S+ T + N K+ K+ + + F D+E
Sbjct: 259 -------DKQETKKTKKPSKPKATPTAKN--------NKSHKIDFSDVRDFKGNDIYDDE 303
Query: 243 TQE-----LNEEDDQENNEYQEETQTDLID 267
T E L+E+D+ E ++E + ++ D
Sbjct: 304 TDEILLFDLHEQDNLNKEEEEKEARQNIND 333
Score = 28.1 bits (61), Expect = 2.3
Identities = 43/183 (23%), Positives = 68/183 (36%), Gaps = 33/183 (18%)
Query: 468 KKTLEAYNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNE 527
KK +E N E K + + E K+ L QK + AL+ L + T+ N
Sbjct: 123 KKEIEIVNTFENQTPLVENTPKAVSHSQIEKAKQKLQEIQKSREALNKLTQSNTNTTNNA 182
Query: 528 CLKLINDPEIREKFRKEL-ELQKELQEYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQA 586
N +KE+ E++K+ QE K E I+R +
Sbjct: 183 -----NSASNVSNAKKEISEVKKQEQEIK-------------------RHENIKR--RTG 216
Query: 587 LDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPE 646
+K + DE NE ++ + + S A + + K EK+KQE +K P
Sbjct: 217 FRVIK--RNDETENETENSVTESKKPT----QSAAAIFEDIKKEWQEKDKQETKKTKKPS 270
Query: 647 ARK 649
K
Sbjct: 271 KPK 273
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 45.8 bits (107), Expect = 1e-05
Identities = 65/286 (22%), Positives = 125/286 (42%), Gaps = 42/286 (14%)
Query: 534 DPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNA 593
DP+ E+ +K LE +KE +E K K + EK K + ++ +E L A+ +N
Sbjct: 137 DPKELEEQKKALEKEKEAKEQAQ--KAQKDKREKRKEERAKNRANLENL-TNAMSNPQNL 193
Query: 594 KTDEERNECLKNIPQDL--QKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKL 651
++ +E +K ++ Q E L DM +A + + K E K++ E+ + A+ K+
Sbjct: 194 SNNKNLSELIKQQRENELDQMERLEDMQEQAQANAL-KQIEELNKKQAEEAVRQRAKDKI 252
Query: 652 EQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDC--VSQAKTEAEKKECE 709
+ K+ K+ E+ L +++++ + + Y+ ++Q A
Sbjct: 253 S---IKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTV 309
Query: 710 KLLTP---EAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSV 766
KL P E ++EEE K K E K++ ++ +++ +
Sbjct: 310 KLEYPQRHEVSSVIEEELK-------------KREEAKRQ---------RELIKQENLNT 347
Query: 767 KAYLDCVSRARN------EKEKKECEKLLTPEAKKLLEQQALDCLK 806
AY++ V A N EK ++E +K++ +AK L Q + LK
Sbjct: 348 TAYINRVMMASNEQIINKEKIREEKQKIILDQAKALETQYVHNALK 393
Score = 32.0 bits (71), Expect = 0.16
Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 7/127 (5%)
Query: 1 MNEENDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKE----SSDHHLDNPTETQT 56
+ +E + E ++KAQ+D + E A + ENL S++ +L + Q
Sbjct: 148 LEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQR 207
Query: 57 HFDGD---KSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEET 113
+ D + E+ Q Q + + E N A++ ++ K + K QK+ ++ +
Sbjct: 208 ENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVRQRAKDKISIKTDKSQKSPEDNS 267
Query: 114 QELNEED 120
EL+ D
Sbjct: 268 IELSPSD 274
Score = 30.4 bits (67), Expect = 0.46
Identities = 65/364 (17%), Positives = 141/364 (37%), Gaps = 60/364 (16%)
Query: 1297 PKDLQENILAKESLKAYKDCLSQARNEEERRACEKLLTPEA-----------------RK 1339
PK+L+E A E K K+ +A+ ++ + E+ A K
Sbjct: 138 PKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNK 197
Query: 1340 LLEQEVKKSVKAYLDCVSRARNEKE--------------KKECEKLLTPEARKFLAKELQ 1385
L + +K+ + LD + R + +E KK+ E+ + A+ ++ +
Sbjct: 198 NLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVRQRAKDKISIKTD 257
Query: 1386 QKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRK 1445
+ K+ +D P+D A + + L+ A++ A K + +R
Sbjct: 258 KSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTVKLEYPQR- 316
Query: 1446 CQNLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSE 1505
+ S + +E++ + +Q +L K E L+ + ++ + ++++ I + E + + +
Sbjct: 317 -HEVSSVIEEELKKREEAKRQRELIKQENLN-TTAYINRVMMASNEQIINK--EKIREEK 372
Query: 1506 RALILGIKRQADEVDLIYSDL------RNRKTFDNMAAKGYPLLPMDFKNGGDIATINAT 1559
+ +IL + +A E +++ L RN + + ++P + + G
Sbjct: 373 QKIILD-QAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIFDDGTFTYFGFK 431
Query: 1560 NVDADK----IASDNPIY---ASIEPDIAKQ----------YETEKTIKDKNLEAKLAKA 1602
N+ + D + A+I+P++ E K IKDK L + K
Sbjct: 432 NITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIKDKALVTVINKG 491
Query: 1603 LGGN 1606
G N
Sbjct: 492 YGKN 495
Score = 30.0 bits (66), Expect = 0.60
Identities = 28/143 (19%), Positives = 63/143 (43%), Gaps = 12/143 (8%)
Query: 189 DGDKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNE 248
D + EE + ++ E E E + + DK K+ + N+ NL+ T ++
Sbjct: 137 DPKELEEQKKALEKE-KEAKEQAQKAQKDKREKRKEERAKNRA------NLENLTNAMSN 189
Query: 249 EDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHL 308
+ NN+ E LI + + Q + E+A +AN + + + +K+ ++ +
Sbjct: 190 PQNLSNNKNLSE----LIKQQRENELDQMERLEDMQEQA-QANALKQIEELNKKQAEEAV 244
Query: 309 DNPTETQTNFDGDKSEEITDDSN 331
+ + + DKS++ +D++
Sbjct: 245 RQRAKDKISIKTDKSQKSPEDNS 267
Score = 27.3 bits (59), Expect = 3.9
Identities = 53/270 (19%), Positives = 115/270 (41%), Gaps = 39/270 (14%)
Query: 937 LESKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEA 996
LE +KK E +K +AK +A+K + +K + ++ + L+ L NA +
Sbjct: 141 LEEQKKALEKEK----------EAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNP 190
Query: 997 DKKRCVKDLPKDL-QKKVLAKESLKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEAKK 1055
K+L + + Q++ + ++ +D +A+ K+ E+L +A++ + + K
Sbjct: 191 QNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQ-ANALKQIEELNKKQAEEAVRQRAK 249
Query: 1056 SVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSKARNEKEKKECE 1115
+ SQ E E + L+ +++ + +++ N
Sbjct: 250 DKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTV 309
Query: 1116 KLLTP---EAKKLLEQQVLDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVK--AYLDC 1170
KL P E ++E+++ K + KR Q++++ +E++ AY++
Sbjct: 310 KLEYPQRHEVSSVIEEEL-------KKREEAKR---------QRELIKQENLNTTAYINR 353
Query: 1171 VSRARN------EKEKKECEKLLTPEAKKL 1194
V A N EK ++E +K++ +AK L
Sbjct: 354 VMMASNEQIINKEKIREEKQKIILDQAKAL 383
>ref|NP_222796.1| putative [Helicobacter pylori J99]
Length = 590
Score = 45.1 bits (105), Expect = 2e-05
Identities = 57/279 (20%), Positives = 104/279 (36%), Gaps = 41/279 (14%)
Query: 1 MNEENDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDG 60
M ++N T KA D +A E NH +KE K+ D + +
Sbjct: 298 MLKDNSLFHT--KAMPTKSVDAITSQAKELNHLVGQIKEMKQ------DGASPNKIDSVV 349
Query: 61 DKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEED 120
+K+ E + ++D+ N+ K +K + +++ K LD Q+L+
Sbjct: 350 NKAMEVRDKLDNNLNQLDNDL----------KDQKGLSSEQQAQVDKALDS-VQQLSHSS 398
Query: 121 DQENNEYQ-----EETQTDLIDDETSKKTQQHSPQD-LSNEEATEANHFEN-----LLKE 169
D N + D ++D + QQ + Q ++N + T AN ++ L+
Sbjct: 399 DVVGNYLDGSLKIDGDDRDDLNDAINNPMQQPAQQTPINNMDNTHANDSKDQGGNALINP 458
Query: 170 SKESSDHHLDNPTETQTNFDGDKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDN 229
+ ++D H D+ +T T + ++ D+ GN T + +N +
Sbjct: 459 NNATNDDHNDDHMDTNTTDTSNANDTPTDDKDASGNNTGDMNNTDTG-----------NT 507
Query: 230 KKPFTQQKNLDEETQELNEEDDQENNEYQEETQTDLIDD 268
T N D+ + N DD N D+ DD
Sbjct: 508 DTGNTDTGNTDDMSNMNNGNDDTGNTNDDMGNSNDMGDD 546
Score = 37.0 bits (84), Expect = 0.005
Identities = 47/248 (18%), Positives = 98/248 (38%), Gaps = 43/248 (17%)
Query: 110 DEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLS---------------N 154
D+ +Q N + ++ ++ QT+ ++ H +D S
Sbjct: 260 DKSSQPANLMSFYRDPKFSKDIQTNRLNSALVNLDNSHMLKDNSLFHTKAMPTKSVDAIT 319
Query: 155 EEATEANHFENLLKESKESSDHHLDNPTETQTNFDGDKSEETQTQMDSEGNETSESSNGS 214
+A E NH +KE K+ D + + + +K+ E + ++D+ N+
Sbjct: 320 SQAKELNHLVGQIKEMKQ------DGASPNKIDSVVNKAMEVRDKLDNNLNQLDNDL--- 370
Query: 215 LADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQ-----EETQTDLIDDE 269
K +K + +++ K LD Q+L+ D N + D ++D
Sbjct: 371 -------KDQKGLSSEQQAQVDKALDS-VQQLSHSSDVVGNYLDGSLKIDGDDRDDLNDA 422
Query: 270 TSKKTQQHSPQD-LSNEEATEANHFEN-----LLKESKESSDHHLDNPTETQTNFDGDKS 323
+ QQ + Q ++N + T AN ++ L+ + ++D H D+ +T T + +
Sbjct: 423 INNPMQQPAQQTPINNMDNTHANDSKDQGGNALINPNNATNDDHNDDHMDTNTTDTSNAN 482
Query: 324 EEITDDSN 331
+ TDD +
Sbjct: 483 DTPTDDKD 490
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 45.1 bits (105), Expect = 2e-05
Identities = 55/218 (25%), Positives = 107/218 (48%), Gaps = 21/218 (9%)
Query: 905 EEXAKESVKA--YLDCVSQAKNEAEKKECEKLLTLESKKKLEEAKKSVKAYLDCVSQAKT 962
+E K+++K+ + + ++ E E K LT E K++LE K++ A + +++ KT
Sbjct: 10 QENPKDALKSTNFHEKHTKPTETTELVEENKALTTE-KERLERENKNLTADKENLTKEKT 68
Query: 963 EAEKKECEKLLTPEAKKLLEQQALDCLKNAKT-EADKKRCVKDLPKDLQK-KVLA--KES 1018
E +K+ E +K++LE + D L+ + D++ K+ + +K KVL KE
Sbjct: 69 ELQKQVNE---LKNSKQVLENEKADWLREKENLTKDRENLTKEKTELTEKNKVLTTEKER 125
Query: 1019 LKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEK 1078
L K+ ++K + E +K+ E +K++LE K + + KT+ +K +
Sbjct: 126 LATEKENLTKEKTESQKQVNE---LKNSKQVLENEKADLTNENTKLKTDKTDLTEK--NQ 180
Query: 1079 LLTPEARKL------LEEAKESVKAYKDCVSKARNEKE 1110
LT E +L L KE + A K+ ++K +++
Sbjct: 181 RLTTEKTELNNKITGLATEKERLAADKENLTKESRQRK 218
Score = 42.4 bits (98), Expect = 1e-04
Identities = 43/205 (20%), Positives = 92/205 (43%), Gaps = 11/205 (5%)
Query: 38 KESKESSDHHLDN--PTETQTHFDGDKSEETQTQMDSEGNE--TSESSNGSLADKLFKKA 93
K++ +S++ H + PTET + +K+ T+ + N+ T++ N + +K
Sbjct: 14 KDALKSTNFHEKHTKPTETTELVEENKALTTEKERLERENKNLTADKENLTKEKTELQKQ 73
Query: 94 RKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLS 153
+ N K + + D ++ N D+EN ++ T+ T++K + + ++
Sbjct: 74 VNELKNSKQVLENEKADWLREKENLTKDRENLTKEKTELTEKNKVLTTEKERLATEKENL 133
Query: 154 NEEATEANHFENLLKESKESSDHHLDNPTETQTNFDGDKSE--ETQTQMDSEGNETSESS 211
+E TE+ N LK SK+ ++ + T T DK++ E ++ +E E +
Sbjct: 134 TKEKTESQKQVNELKNSKQVLENEKADLTNENTKLKTDKTDLTEKNQRLTTEKTELNNKI 193
Query: 212 NGSLADKLFKKARKLVDNKKPFTQQ 236
G +K +L +K+ T++
Sbjct: 194 TGLATEK-----ERLAADKENLTKE 213
Score = 42.0 bits (97), Expect = 2e-04
Identities = 59/239 (24%), Positives = 106/239 (43%), Gaps = 40/239 (16%)
Query: 75 NETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQEET--Q 132
N+T E+ +L F + + KP T+ L EE + L E ++ E + T +
Sbjct: 7 NDTQENPKDALKSTNFHEK-----HTKP-TETTELVEENKALTTEKERLERENKNLTADK 60
Query: 133 TDLIDDETSKKTQ----QHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNF 188
+L ++T + Q ++S Q L NE+A ENL K+ + N
Sbjct: 61 ENLTKEKTELQKQVNELKNSKQVLENEKADWLREKENLTKD---------------RENL 105
Query: 189 DGDKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNE 248
+K+E T E N+ + LA + ++ +++K + KN + + NE
Sbjct: 106 TKEKTELT------EKNKVLTTEKERLATEKENLTKEKTESQKQVNELKNSKQVLE--NE 157
Query: 249 EDDQENNEYQEET-QTDLIDDE---TSKKTQQHSP-QDLSNEEATEANHFENLLKESKE 302
+ D N + +T +TDL + T++KT+ ++ L+ E+ A ENL KES++
Sbjct: 158 KADLTNENTKLKTDKTDLTEKNQRLTTEKTELNNKITGLATEKERLAADKENLTKESRQ 216
Score = 38.5 bits (88), Expect = 0.002
Identities = 35/161 (21%), Positives = 74/161 (45%), Gaps = 4/161 (2%)
Query: 168 KESKESSDHHLDN--PTETQTNFDGDKSEETQTQMDSEGNE--TSESSNGSLADKLFKKA 223
K++ +S++ H + PTET + +K+ T+ + N+ T++ N + +K
Sbjct: 14 KDALKSTNFHEKHTKPTETTELVEENKALTTEKERLERENKNLTADKENLTKEKTELQKQ 73
Query: 224 RKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLS 283
+ N K + + D ++ N D+EN ++ T+ T++K + + ++
Sbjct: 74 VNELKNSKQVLENEKADWLREKENLTKDRENLTKEKTELTEKNKVLTTEKERLATEKENL 133
Query: 284 NEEATEANHFENLLKESKESSDHHLDNPTETQTNFDGDKSE 324
+E TE+ N LK SK+ ++ + T T DK++
Sbjct: 134 TKEKTESQKQVNELKNSKQVLENEKADLTNENTKLKTDKTD 174
Score = 36.2 bits (82), Expect = 0.008
Identities = 42/177 (23%), Positives = 79/177 (43%), Gaps = 28/177 (15%)
Query: 1 MNEENDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDG 60
+ +E +L+ ++S Q L NE+A ENL K+ +N T+ +T
Sbjct: 63 LTKEKTELQKQVNELKNSKQVLENEKADWLREKENLTKDR--------ENLTKEKTEL-- 112
Query: 61 DKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEED 120
+E N+ + LA + ++ +++K + KN + + NE+
Sbjct: 113 -----------TEKNKVLTTEKERLATEKENLTKEKTESQKQVNELKNSKQVLE--NEKA 159
Query: 121 DQENNEYQEET-QTDLIDDE---TSKKTQQHSP-QDLSNEEATEANHFENLLKESKE 172
D N + +T +TDL + T++KT+ ++ L+ E+ A ENL KES++
Sbjct: 160 DLTNENTKLKTDKTDLTEKNQRLTTEKTELNNKITGLATEKERLAADKENLTKESRQ 216
Score = 30.8 bits (68), Expect = 0.35
Identities = 45/211 (21%), Positives = 83/211 (39%), Gaps = 30/211 (14%)
Query: 205 NETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQEET--Q 262
N+T E+ +L F + + KP T+ L EE + L E ++ E + T +
Sbjct: 7 NDTQENPKDALKSTNFHEK-----HTKP-TETTELVEENKALTTEKERLERENKNLTADK 60
Query: 263 TDLIDDETSKKTQ----QHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNF 318
+L ++T + Q ++S Q L NE+A ENL K+ +E+ TE
Sbjct: 61 ENLTKEKTELQKQVNELKNSKQVLENEKADWLREKENLTKD-RENLTKEKTELTEKNKVL 119
Query: 319 DGDKSEEITDDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFS 378
+K T+ N + S+K+ + + LE++ + +
Sbjct: 120 TTEKERLATEKENLTKEKTESQKQV-----------------NELKNSKQVLENEKADLT 162
Query: 379 KDRNLYVNDEIQIRQEYNRLLKERNEKGNMI 409
+ D+ + ++ RL E+ E N I
Sbjct: 163 NENTKLKTDKTDLTEKNQRLTTEKTELNNKI 193
Score = 29.6 bits (65), Expect = 0.78
Identities = 51/196 (26%), Positives = 81/196 (41%), Gaps = 36/196 (18%)
Query: 457 LIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCL 516
L DK+ + K L+ + +KN+K E K L + ENL K N K + L
Sbjct: 56 LTADKENLTKEKTELQKQVNELKNSKQVLENEKADWLREKENLTKDRENLTKEKTELTEK 115
Query: 517 KNAKTDEERNECLKLINDPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNKCLKGLSK 576
T E+ +L + E K ++ E QK++ E +KN+K E K L+
Sbjct: 116 NKVLTTEKE----RLATEKENLTK--EKTESQKQVNE----LKNSKQVLENEKA--DLTN 163
Query: 577 EAIERLKQQALDCLKNAKTD-EERNECLKNIPQDLQKELLADMSVKAYKDCVSKARNEKE 635
E + LK KTD E+N+ L +L + ++ EKE
Sbjct: 164 ENTK---------LKTDKTDLTEKNQRLTTEKTELNNK-------------ITGLATEKE 201
Query: 636 KQECEK-LLTPEARKK 650
+ +K LT E+R++
Sbjct: 202 RLAADKENLTKESRQR 217
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 44.7 bits (104), Expect = 2e-05
Identities = 134/576 (23%), Positives = 235/576 (40%), Gaps = 140/576 (24%)
Query: 921 QAKNEAEKKECEKLLTLESKKKLEEAKKSVKAYLDCVSQAKTEAEK-KECEKLLTPEAKK 979
+AK EA+ + ++ ES K+ K+ KA + +AKT+ K KE K P KK
Sbjct: 13 RAKQEAKTEATQENKAKESNKE----NKNNKAKEGKIKEAKTKESKVKETAKEPIP-VKK 67
Query: 980 LLEQQAL---------DCLK---------NAKTEADKKRCVKDLPKDLQKKVLAKESLKA 1021
L +AL DC+ T A K+ +K+L + QKK+++
Sbjct: 68 LSFNEALEELFANSLSDCVSYESIIQISAKVPTLAQIKK-IKELCQKYQKKLVSSSEYAK 126
Query: 1022 YKDCVSKARNEKEKKECEKLLTPE---------AKKLLEEAKKS--VKAYLDCVSQAKTE 1070
+ + K +N +EK +K+L E K LE ++ V+ YL + K
Sbjct: 127 KLNAIDKIKNTEEK---QKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLL 183
Query: 1071 AEKKECEKLLTPEAR---KLLEEAKESVK-------AYKDCVSKARNEKEKKECEKLLTP 1120
++ +E E L+ + R ++ +A SV AYKD + E+ KE +
Sbjct: 184 SKDEEIE--LSKQIRLGEDIILDAICSVPYLIDFIYAYKDAL--INRERRVKELFRSFDD 239
Query: 1121 EAKKLLEQQVLDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEK 1180
+ E V D K+ +E D++ + +KKV+ +EK+K
Sbjct: 240 DD----ENSVSDPKKDDDSEEDEE-------NEERKKVV----------------SEKDK 272
Query: 1181 KECEKLLTPEAKKLLEEA-KESLKAYKDCLSQARNE---------EERRACEKLLTPEAR 1230
K EK+ E+ K L++A KE LKA + + + +E + + ++L E
Sbjct: 273 KRVEKV--QESFKALDKAKKEWLKALEAPIDEKEDELVRSLTLAYKRQTLKDRLYDLEPT 330
Query: 1231 KLLEQEVKKSIKAYLDCVSRARNEKEKKECE-------KLLTPEARKFLAKQVLNCLEKA 1283
L E+ K+++ L S EKE K E L +K LA + N ++
Sbjct: 331 SKLINELVKTMETTLK--SGDGFEKELKRLEYKLPLFNDTLIANHKKILA-NITNMTKED 387
Query: 1284 GNEEERKACLKNLPKDLQENILAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQ 1343
+ +A + ++ DL++ L KE+ + D L P K + +
Sbjct: 388 IIAQVPEATMVSVYMDLKKLFLTKEASEEGFD-----------------LAPNKLKEILE 430
Query: 1344 EVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDR 1403
++K+ K D RA+N+ K +L+ A++F ++ L D
Sbjct: 431 QIKRG-KLISD---RAKNKMAKSNL-RLVVSIAKRFTSRGLPFLDLI---------QEGN 476
Query: 1404 AAIMKCLDGLSDEEKLKY-------LQEAREKAVAD 1432
+MK +D E+ K+ +++A +A+AD
Sbjct: 477 IGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAIAD 512
Score = 43.5 bits (101), Expect = 5e-05
Identities = 111/489 (22%), Positives = 188/489 (37%), Gaps = 86/489 (17%)
Query: 1051 EEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKES-VKAYKDCVSKARNE- 1108
E+A K K +AKTEA ++ K E + +AKE +K K SK +
Sbjct: 8 EKAPKRAK------QEAKTEATQENKAKESNKENKN--NKAKEGKIKEAKTKESKVKETA 59
Query: 1109 KEKKECEKLLTPEA-KKLLEQQVLDCLK---------NAKTEADKKRCVKDLPKDLQKKV 1158
KE +KL EA ++L + DC+ T A K+ +K+L + QKK+
Sbjct: 60 KEPIPVKKLSFNEALEELFANSLSDCVSYESIIQISAKVPTLAQIKK-IKELCQKYQKKL 118
Query: 1159 LAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEER 1218
++ L+ + + +N +EK +K+L E LE+ + LK KD L +R++
Sbjct: 119 VSSSEYAKKLNAIDKIKNTEEK---QKVLDEE----LEDGYDFLKE-KDFLEWSRSDSPV 170
Query: 1219 R------ACEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNEKEKKECEKLLTPEARKFL 1272
R KLL+ + L ++++ LD + +L
Sbjct: 171 RMYLREMGDIKLLSKDEEIELSKQIRLGEDIILDAICSV------------------PYL 212
Query: 1273 AKQVLNCLEKAGNEEERKACLKNLPKDLQENILAKESLKAYKDCLSQARNEEERRACEKL 1332
+ + N E R L D EN ++ K D NEE ++ +
Sbjct: 213 IDFIYAYKDALINRERRVKELFRSFDDDDENSVSDP--KKDDDSEEDEENEERKKVVSEK 270
Query: 1333 LTPEARKLLE--QEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAK---ELQQK 1387
K+ E + + K+ K +L + +EKE + L R+ L +L+
Sbjct: 271 DKKRVEKVQESFKALDKAKKEWLKALEAPIDEKEDELVRSLTLAYKRQTLKDRLYDLEPT 330
Query: 1388 DKAIKDCLKNADPNDRAAIMKCLDGLSDE-EKLKY--------LQEAREKAVADCLAMAK 1438
K I + +K + +K DG E ++L+Y L +K +A+ M K
Sbjct: 331 SKLINELVKTME-----TTLKSGDGFEKELKRLEYKLPLFNDTLIANHKKILANITNMTK 385
Query: 1439 TDEEKRKCQNLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCL 1498
D+I ++ + L K +ASE +L +E +EQ
Sbjct: 386 ------------EDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLAPNKLKEILEQIK 433
Query: 1499 EGLSDSERA 1507
G S+RA
Sbjct: 434 RGKLISDRA 442
Score = 38.5 bits (88), Expect = 0.002
Identities = 89/437 (20%), Positives = 178/437 (40%), Gaps = 75/437 (17%)
Query: 558 IKNAKTEAEKNK-------CLKGLS-KEAIERLKQQAL-DCLK-------NAKTDE-ERN 600
IK AKT+ K K +K LS EA+E L +L DC+ +AK +
Sbjct: 45 IKEAKTKESKVKETAKEPIPVKKLSFNEALEELFANSLSDCVSYESIIQISAKVPTLAQI 104
Query: 601 ECLKNIPQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLE-QQVLDCL 659
+ +K + Q QK+L++ + + K +N +EKQ K+L E + + D L
Sbjct: 105 KKIKELCQKYQKKLVSSSEYAKKLNAIDKIKNTEEKQ---KVLDEELEDGYDFLKEKDFL 161
Query: 660 KNAKTDEERKKCLKD------LPKD----------LQSDILAK---------ESLKAYKD 694
+ +++D + L++ L KD L DI+ + + AYKD
Sbjct: 162 EWSRSDSPVRMYLREMGDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKD 221
Query: 695 CVSQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPE 754
+ E KE + + + + + K+ ++ + E +E +K+++ +
Sbjct: 222 AL--INRERRVKELFRSFDDDDENSVSDPKKD---------DDSEEDEENEERKKVVSEK 270
Query: 755 AKKKLEEAKKSVKA-------YLDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKN 807
KK++E+ ++S KA +L + +EKE + L ++ L+ + D
Sbjct: 271 DKKRVEKVQESFKALDKAKKEWLKALEAPIDEKEDELVRSLTLAYKRQTLKDRLYDLEPT 330
Query: 808 AKTDKERKKCLKDLPK--DLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKL 865
+K E K ++ K D +K L + K L + KK + +
Sbjct: 331 SKLINELVKTMETTLKSGDGFEKELKRLEYK--LPLFNDTLIANHKKILANITNMTKEDI 388
Query: 866 LEEAKKS--VKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEXAKESVKAYLDCVSQAK 923
+ + ++ V Y+D T+ +E L + +++LE+ + + + +AK
Sbjct: 389 IAQVPEATMVSVYMDLKKLFLTKEASEEGFDLAPNKLKEILEQIKRGKLIS-----DRAK 443
Query: 924 NEAEKKECEKLLTLESK 940
N+ K ++++ +
Sbjct: 444 NKMAKSNLRLVVSIAKR 460
Score = 26.2 bits (56), Expect = 8.6
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 1582 KQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKAENNKI-DKDVAETAK 1638
K+ EK K EAK K+ +KE E K + K + V ETAK
Sbjct: 3 KKANEEKAPKRAKQEAKTEATQENKAKESNKENKNNKAKEGKIKEAKTKESKVKETAK 60
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 42.7 bits (99), Expect = 9e-05
Identities = 66/282 (23%), Positives = 129/282 (45%), Gaps = 42/282 (14%)
Query: 720 LEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLE-EAKKSVKAYLDCVS---R 775
LE+E KE+ K+ + + + E +K E E+ T +++ +LE E +K+ K+ ++ + +
Sbjct: 129 LEQEKKEANKSGI----KLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQIK 184
Query: 776 ARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTD--KERKKCLKDLPKDLQKK----V 829
A E++K E EK +++ LEQQ + N + D KE+K +K+ ++ Q+K
Sbjct: 185 AEQERQKTEQEKQKANKSEIELEQQKQKTI-NTQRDLIKEQKDFIKETEQNCQEKHGQLF 243
Query: 830 LAKESVKAYLDCVSQAKTEAE---KKECEKLLTPEARKLLEEAK----------KSVKAY 876
+ K +K + + EAE K + TP K L +K + + AY
Sbjct: 244 IKKARIKTGITTGIAIEIEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAY 303
Query: 877 LDCVSQAKTEAEKKECEKL------------LTPEARKLLEEXAKESVKAYLDCVSQAKN 924
L ++ ++K +++ L P K+ EE KE++K + +QAK
Sbjct: 304 LQKELESLPYSQKAIAKQVDFYKPSSIAYLELDPRDFKVTEEWQKENLK--IRSKAQAKM 361
Query: 925 EAEKKECEKLLTLESKKKLEEAKKSVKAYLDCVSQAKTEAEK 966
+ L T +S +++ + ++ V+ + + EK
Sbjct: 362 LEMRNPQAHLPTSQSLLFVQKIFADINKEIEAVANTEKKTEK 403
Score = 38.5 bits (88), Expect = 0.002
Identities = 70/309 (22%), Positives = 128/309 (40%), Gaps = 53/309 (17%)
Query: 1177 EKEKKECEKL---LTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACE----KLLTPEA 1229
E+EKKE K L E +K +E +++ K+ + L Q R + + E ++ +
Sbjct: 130 EQEKKEANKSGIKLEQERQKTEQERQKTNKSEIE-LEQERQKTNKSGIELANSQIKAEQE 188
Query: 1230 RKLLEQEVKKSIKAYLDCVSRARNEKEKK-ECEKLLTPEARKFLAKQVLNCLEKAGNEEE 1288
R+ EQE +K+ K+ ++ +K+K ++ L E + F+ + NC EK G
Sbjct: 189 RQKTEQEKQKANKSEIEL----EQQKQKTINTQRDLIKEQKDFIKETEQNCQEKHGQLFI 244
Query: 1289 RKACLKNLPKDLQENILAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKS 1348
+KA +K I +++ +C + + + + P +++ Q K+
Sbjct: 245 KKARIKT-------GITTGIAIEIEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKA 297
Query: 1349 VK--AYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQ-QKDKAIKDCLKNADPNDRAA 1405
+ AYL +KE E L P ++K +AK++ K +I DP D
Sbjct: 298 QELIAYL-----------QKELESL--PYSQKAIAKQVDFYKPSSI--AYLELDPRDFKV 342
Query: 1406 IMKCLDGLSDEEKLKYLQEAREKAVADCLAMAK------TDEEKRKCQNLYSDLIQEIQN 1459
EE K + R KA A L M T + Q +++D+ +EI+
Sbjct: 343 ---------TEEWQKENLKIRSKAQAKMLEMRNPQAHLPTSQSLLFVQKIFADINKEIEA 393
Query: 1460 KRTQNKQNQ 1468
K+ +
Sbjct: 394 VANTEKKTE 402
Score = 32.3 bits (72), Expect = 0.12
Identities = 33/117 (28%), Positives = 61/117 (51%), Gaps = 11/117 (9%)
Query: 904 LEEXAKESVKAYLDCVSQAKNEAEKKECEKLLTLESKKKLE-EAKKSVKAYLDCVS---Q 959
LE+ KE+ K+ + + + E +K E E+ T +S+ +LE E +K+ K+ ++ + +
Sbjct: 129 LEQEKKEANKSGI----KLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQIK 184
Query: 960 AKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAK 1016
A+ E +K E EK +++ LEQQ K T+ D + KD K+ ++ K
Sbjct: 185 AEQERQKTEQEKQKANKSEIELEQQK---QKTINTQRDLIKEQKDFIKETEQNCQEK 238
Score = 31.2 bits (69), Expect = 0.27
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 23/128 (17%)
Query: 1566 IASDNPIYASIEPDIAKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKAE 1625
IA+ + A DI KQ E E+ K+ N ++ + K + +++K+ KS E + E
Sbjct: 109 IAASLLLAACSTGDIDKQIELEQEKKEAN-KSGIKLEQERQKTEQERQKTNKSEIELEQE 167
Query: 1626 NNKIDKDVAETAK-------------------NISEIALKNKKEKSGEFVDENGNPIDDK 1666
K +K E A N SEI L+ +K+K+ ++ + I ++
Sbjct: 168 RQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSEIELEQQKQKT---INTQRDLIKEQ 224
Query: 1667 KKAEKQDE 1674
K K+ E
Sbjct: 225 KDFIKETE 232
Score = 30.8 bits (68), Expect = 0.35
Identities = 52/262 (19%), Positives = 105/262 (39%), Gaps = 23/262 (8%)
Query: 609 DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER 668
D+ K++ + K K E++K E E+ T ++ +LEQ ER
Sbjct: 122 DIDKQIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQ-------------ER 168
Query: 669 KKCLKDLPKDLQSDILAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEAKESV 728
+K K + S I A++ + Q K +A K E E L + +K + + ++ +
Sbjct: 169 QKTNKSGIELANSQIKAEQE----RQKTEQEKQKANKSEIE--LEQQKQKTINTQ-RDLI 221
Query: 729 KAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSRARNEKEKKECEKL 788
K D + + + ++K + + K +++ +C + + + +
Sbjct: 222 KEQKDFIKETEQNCQEKHGQLFIKKARIKTGITTGIAIEIEAECKTPKPAKTNQTPIQPK 281
Query: 789 LTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKV-LAKESVKAYLDCVSQ--A 845
P +K+ Q+ + ++ + L K + K+V K S AYL+ +
Sbjct: 282 HLPNSKQPRSQRGSKAQELIAYLQKELESLPYSQKAIAKQVDFYKPSSIAYLELDPRDFK 341
Query: 846 KTEAEKKECEKLLTPEARKLLE 867
TE +KE K+ + K+LE
Sbjct: 342 VTEEWQKENLKIRSKAQAKMLE 363
Score = 30.8 bits (68), Expect = 0.35
Identities = 25/116 (21%), Positives = 58/116 (49%), Gaps = 5/116 (4%)
Query: 1362 EKEKKECEK--LLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKL 1419
E+EKKE K + + R+ +E Q+ +K+ + + +++ I + E++
Sbjct: 130 EQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQIKAEQER 189
Query: 1420 KYLQEAREKAVADCLAMAKTDEEKRKCQNLYSDLIQEIQNKRTQNKQNQLSKTERL 1475
+ ++ ++KA + + +++K+K N DLI+E ++ + +QN K +L
Sbjct: 190 QKTEQEKQKANKSEIEL---EQQKQKTINTQRDLIKEQKDFIKETEQNCQEKHGQL 242
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 42.0 bits (97), Expect = 2e-04
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 13/162 (8%)
Query: 887 AEKKECEKLLTPEARKLLEEXAKESVKAYLDCVSQAKNEAEKKECEKLLTLESKKKLEEA 946
+EK++ ++L E +LL+E + K + + KN A K+E K L E KK+L+
Sbjct: 45 SEKEQSLRILQTENARLLDEKSDLLNKKEKEIDEKLKNLAAKEEAFKTLQTEEKKRLKNL 104
Query: 947 KKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE----QQALDCLKNAKTEADKKRCV 1002
+ + L + QAK + K+ ++ +LE Q AL+ L K + K
Sbjct: 105 IEENEGILREIKQAKDSKIGETYSKMKDSKSALILENLPTQNALEILMALKPQELGKILA 164
Query: 1003 KDLPKDLQKKVLAKESLKAYKDCVSKARNEKEKKECEKLLTP 1044
K P KK A L + KE KE +K P
Sbjct: 165 KMDP----KKAAALTEL-----WQKPPKENKENKESQKTTDP 197
Score = 38.9 bits (89), Expect = 0.001
Identities = 33/125 (26%), Positives = 60/125 (47%), Gaps = 4/125 (3%)
Query: 703 AEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEA 762
+EK++ ++L E +LL+E++ K + + K A K+E K L E KK+L+
Sbjct: 45 SEKEQSLRILQTENARLLDEKSDLLNKKEKEIDEKLKNLAAKEEAFKTLQTEEKKRLKNL 104
Query: 763 KKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLE----QQALDCLKNAKTDKERKKCL 818
+ + L + +A++ K + K+ ++ +LE Q AL+ L K + K
Sbjct: 105 IEENEGILREIKQAKDSKIGETYSKMKDSKSALILENLPTQNALEILMALKPQELGKILA 164
Query: 819 KDLPK 823
K PK
Sbjct: 165 KMDPK 169
Score = 28.5 bits (62), Expect = 1.7
Identities = 30/121 (24%), Positives = 55/121 (44%), Gaps = 8/121 (6%)
Query: 977 AKKLLEQQALDCLKNAKTEAD------KKRCVKDLPKDLQKKVLAKESL--KAYKDCVSK 1028
A++LL+ A+ K A+ + D K++ ++ L + + + K L K K+ K
Sbjct: 20 AQELLQCSAIFESKKAELKEDLRQLSEKEQSLRILQTENARLLDEKSDLLNKKEKEIDEK 79
Query: 1029 ARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLL 1088
+N K+E K L E KK L+ + + L + QAK + K+ ++ +L
Sbjct: 80 LKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKDSKIGETYSKMKDSKSALIL 139
Query: 1089 E 1089
E
Sbjct: 140 E 140
Score = 26.2 bits (56), Expect = 8.6
Identities = 49/181 (27%), Positives = 75/181 (41%), Gaps = 46/181 (25%)
Query: 1128 QQVLDCLKNAKTEADKKRCVKDL----PKDLQKKVLAKESVKAYLDCVSRARNEKEKKEC 1183
Q++L C +A E+ K +DL K+ ++L E+ + LD S N+KEK+
Sbjct: 21 QELLQC--SAIFESKKAELKEDLRQLSEKEQSLRILQTENARL-LDEKSDLLNKKEKEID 77
Query: 1184 EKL------------LTPEAKK----LLEEAKESLKAYK--------DCLSQARNEEERR 1219
EKL L E KK L+EE + L+ K + S+ ++ +
Sbjct: 78 EKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKDSKIGETYSKMKDSKSAL 137
Query: 1220 ACEKLLTPEARKLL----EQEVKKSIKAYLDCVSRA----------RNEKEKKECEKLLT 1265
E L T A ++L QE+ K I A +D A + KE KE +K
Sbjct: 138 ILENLPTQNALEILMALKPQELGK-ILAKMDPKKAAALTELWQKPPKENKENKESQKTTD 196
Query: 1266 P 1266
P
Sbjct: 197 P 197
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 40.0 bits (92), Expect = 6e-04
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 702 EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEK---LLTP--EAK 756
E KE EK+L KK +E+A + D S+ K E +K EK L P E K
Sbjct: 28 ERHNKEAEKILLDLNKK--DEQAIDLNLE--DLPSEKKNEKIEKVTEKQGDFLEPKEEPK 83
Query: 757 KKLEEAKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTDKERKK 816
++ EE+ + + + L+ ++ +K+ +K E ++L EQQ L K ++E ++
Sbjct: 84 EEPEESLEDIFSSLNDFQEKTDKNAQKDEQKNEQEEQRRLREQQRL------KQNQENQE 137
Query: 817 CLKDLPKDLQKKVLAKESVK 836
LK L ++L + ESVK
Sbjct: 138 MLKGLQQNLNQFTQKLESVK 157
Score = 33.9 bits (76), Expect = 0.041
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 14/139 (10%)
Query: 1032 EKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEK---LLTP--EARK 1086
E+ KE EK+L KK + +++ D S+ K E +K EK L P E ++
Sbjct: 28 ERHNKEAEKILLDLNKKDEQAIDLNLE---DLPSEKKNEKIEKVTEKQGDFLEPKEEPKE 84
Query: 1087 LLEEAKESVKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEQQVLDCLKNAKTEADKKRC 1146
EE+ E + + + + ++ +K+ +K E ++L EQQ L K + +
Sbjct: 85 EPEESLEDIFSSLNDFQEKTDKNAQKDEQKNEQEEQRRLREQQRL------KQNQENQEM 138
Query: 1147 VKDLPKDLQKKVLAKESVK 1165
+K L ++L + ESVK
Sbjct: 139 LKGLQQNLNQFTQKLESVK 157
Score = 33.5 bits (75), Expect = 0.054
Identities = 36/141 (25%), Positives = 65/141 (45%), Gaps = 17/141 (12%)
Query: 886 EAEKKECEKLLTPEARKLLEEXAKESVKAYL-DCVSQAKNEAEKKECEKLLTL-----ES 939
E KE EK+L L + ++++ L D S+ KNE +K EK E
Sbjct: 28 ERHNKEAEKILLD-----LNKKDEQAIDLNLEDLPSEKKNEKIEKVTEKQGDFLEPKEEP 82
Query: 940 KKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKK 999
K++ EE+ + + + L+ + + +K+ +K E ++L EQQ L K + +
Sbjct: 83 KEEPEESLEDIFSSLNDFQEKTDKNAQKDEQKNEQEEQRRLREQQRL------KQNQENQ 136
Query: 1000 RCVKDLPKDLQKKVLAKESLK 1020
+K L ++L + ES+K
Sbjct: 137 EMLKGLQQNLNQFTQKLESVK 157
Score = 28.9 bits (63), Expect = 1.3
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 566 EKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL-----QKELLADMSV 620
E K L L+K+ +QA+D E++NE ++ + + KE +
Sbjct: 33 EAEKILLDLNKK-----DEQAIDLNLEDLPSEKKNEKIEKVTEKQGDFLEPKEEPKEEPE 87
Query: 621 KAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQ 680
++ +D S + +EK + + ++ EQ+ L + K ++E ++ LK L ++L
Sbjct: 88 ESLEDIFSSLNDFQEKTDKNAQKDEQKNEQEEQRRLREQQRLKQNQENQEMLKGLQQNLN 147
Query: 681 SDILAKESLK 690
ES+K
Sbjct: 148 QFTQKLESVK 157
Score = 28.9 bits (63), Expect = 1.3
Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 18/152 (11%)
Query: 59 DGDKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQE--- 115
D +K +E ++ E + SE N +K+ K K D +P + K EE+ E
Sbjct: 40 DLNKKDEQAIDLNLE-DLPSEKKN----EKIEKVTEKQGDFLEPKEEPKEEPEESLEDIF 94
Query: 116 --LNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEA-----NHFENLLK 168
LN+ ++ + Q++ Q + +++ + QQ Q+ N+E + N F L+
Sbjct: 95 SSLNDFQEKTDKNAQKDEQKNEQEEQRRLREQQRLKQNQENQEMLKGLQQNLNQFTQKLE 154
Query: 169 ESKESSDHHLDNPTETQTNFDGDKSEETQTQM 200
K + LD Q D +E Q+
Sbjct: 155 SVKNKT---LDLQIPKQDGVDEKAYQEWYAQI 183
Score = 28.1 bits (61), Expect = 2.3
Identities = 29/140 (20%), Positives = 58/140 (40%), Gaps = 19/140 (13%)
Query: 165 NLLKESKESSDHHLDNPTETQTNFDGDKSEETQTQMDSEGNETSESSNGSLADKLFKKAR 224
+L K+ +++ D +L++ + N +K E Q E E SL D
Sbjct: 40 DLNKKDEQAIDLNLEDLPSEKKNEKIEKVTEKQGDFLEPKEEPKEEPEESLEDI------ 93
Query: 225 KLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLSN 284
F+ + E+T + ++D+Q+N ++E Q L + + K+ Q++ Q++
Sbjct: 94 --------FSSLNDFQEKTDKNAQKDEQKN---EQEEQRRLREQQRLKQNQEN--QEMLK 140
Query: 285 EEATEANHFENLLKESKESS 304
N F L+ K +
Sbjct: 141 GLQQNLNQFTQKLESVKNKT 160
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 38.9 bits (89), Expect = 0.001
Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 35/224 (15%)
Query: 967 KECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESLKAYKDCV 1026
KE KLL P + + L N + E V PK++ + + + KDC+
Sbjct: 674 KEALKLLHP-FMPFISESLYHKLSNTELENAHSIMVMPYPKEIAQDEKLEHEFEVIKDCI 732
Query: 1027 SKARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARK 1086
R K E ++ EA L E ++ + L +Q + EK ++T + K
Sbjct: 733 VSLRRLKIMLETPPIVLKEASVGLREKIENTER-LQNYAQKLAKLEK---VSVITYKPLK 788
Query: 1087 LLEEAKESVKAYKD--------CVSKARNEKEKKECEKLLTPEAKKLLEQQVLDCLKNAK 1138
+ + E + Y D +++ + + EK E EKL K
Sbjct: 789 SVSDVGEFCQTYADLENLDLSPLIARLKKQLEKLEKEKL--------------------K 828
Query: 1139 TEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKE 1182
+ VK+ PK + +K A+ES+K L+ + + E + E
Sbjct: 829 LNLHNENFVKNAPKSVLEK--ARESLKTLLEKEGKIQQELDLLE 870
Score = 34.7 bits (78), Expect = 0.024
Identities = 45/225 (20%), Positives = 89/225 (39%), Gaps = 36/225 (16%)
Query: 637 QECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCV 696
+E KLL P + + + L N + + + PK++ D + + KDC+
Sbjct: 674 KEALKLLHP-FMPFISESLYHKLSNTELENAHSIMVMPYPKEIAQDEKLEHEFEVIKDCI 732
Query: 697 SQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAK 756
+ E ++ EA L E+ + + + L +Q + EK ++T +
Sbjct: 733 VSLRRLKIMLETPPIVLKEASVGLREKIENTER--LQNYAQKLAKLEK---VSVITYKPL 787
Query: 757 KKLEEAKKSVKAYLD--------CVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNA 808
K + + + + Y D ++R + + EK E EKL
Sbjct: 788 KSVSDVGEFCQTYADLENLDLSPLIARLKKQLEKLEKEKL-------------------- 827
Query: 809 KTDKERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKE 853
K + + +K+ PK + +K A+ES+K L+ + + E + E
Sbjct: 828 KLNLHNENFVKNAPKSVLEK--ARESLKTLLEKEGKIQQELDLLE 870
Score = 32.3 bits (72), Expect = 0.12
Identities = 47/200 (23%), Positives = 79/200 (39%), Gaps = 17/200 (8%)
Query: 1112 KECEKLLTPEAKKLLEQQVLDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCV 1171
KE KLL P + + + L N + E V PK++ + + + DC+
Sbjct: 674 KEALKLLHP-FMPFISESLYHKLSNTELENAHSIMVMPYPKEIAQDEKLEHEFEVIKDCI 732
Query: 1172 SRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARK 1231
R K E ++ EA L E E+ + ++ + E+ ++T + K
Sbjct: 733 VSLRRLKIMLETPPIVLKEASVGLREKIENTERLQNYAQKLAKLEK----VSVITYKPLK 788
Query: 1232 LLEQEVKKSIKAYLD--------CVSRARNEKEKKECEKL-LTPEARKFLAKQVLNCLEK 1282
+ +V + + Y D ++R + + EK E EKL L F+ + LEK
Sbjct: 789 SV-SDVGEFCQTYADLENLDLSPLIARLKKQLEKLEKEKLKLNLHNENFVKNAPKSVLEK 847
Query: 1283 AGNEEERKACLKNLPKDLQE 1302
A E K L+ K QE
Sbjct: 848 A--RESLKTLLEKEGKIQQE 865
Score = 28.1 bits (61), Expect = 2.3
Identities = 35/178 (19%), Positives = 68/178 (37%), Gaps = 7/178 (3%)
Query: 1192 KKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSIKAYLDCVSRA 1251
K+ L E + +L Y +E R A + +A LL + + + S+
Sbjct: 602 KERLNEYQTALGRYAKSRLNLVTKEVRNALDNYRFNDATTLLYRFLWGEFCDWFIEFSKV 661
Query: 1252 RNE------KEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENIL 1305
NE KE KLL P F+++ + + L E + PK++ ++
Sbjct: 662 ENEAIDELGSVLKEALKLLHP-FMPFISESLYHKLSNTELENAHSIMVMPYPKEIAQDEK 720
Query: 1306 AKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEK 1363
+ + KDC+ R + ++ EA L ++++ + + A+ EK
Sbjct: 721 LEHEFEVIKDCIVSLRRLKIMLETPPIVLKEASVGLREKIENTERLQNYAQKLAKLEK 778
>ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter pylori J99]
Length = 803
Score = 38.1 bits (87), Expect = 0.002
Identities = 118/548 (21%), Positives = 214/548 (38%), Gaps = 79/548 (14%)
Query: 659 LKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKK 718
+KN TD + L + K L + K++++ YK + + K + L EA +
Sbjct: 261 IKNYPTDPNIPEALYYVAKALDENNNYKQAVRYYKRILLEYKNSRYAPLAQMRLAIEAAE 320
Query: 719 LLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAK-KSVKAYLDCVSRAR 777
+ + + + S AK +K+ ++ A+ ++ + K +D V ++
Sbjct: 321 --GSDLSNANMLFKEAFSNAK---DKESASEIALNWAEAEINYQNFNNAKYLIDKVVQSN 375
Query: 778 NEKEKKECEKLLTPEAKKLLEQQALD--------CLKNAKTD-KERKKCLKDLPKDLQKK 828
+ E L E KLL++ ++ L N D K +++ L DL L +
Sbjct: 376 PDYLSMHSELAL--ELLKLLKKNQMNESAIEIAHLLLNQDDDLKAKEQALYDLGA-LYAR 432
Query: 829 VLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKTEAE 888
+ ++ Y Q E E+ + +A +E + A+ D + Q
Sbjct: 433 IKDFKNAHLYNLQYLQDHAELERASVVRARDEKALFSMEGNTQEKIAHYDKIIQ--NFPN 490
Query: 889 KKECEKLLTPEARKLLEEXAKESVKAYLDCVSQAKN-EAEKKECEKLLTLESKKKLEEAK 947
E +K L +A+ L + K Y + + KN + +K L + +K LE+ +
Sbjct: 491 SNEAQKALELKAQLLFDN------KHYAEVLGMQKNLPKDSPLIQKTLNILAKTPLEDHR 544
Query: 948 -KSVKAYLDCVS----QAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCV 1002
K YL ++ + E + +C L K+ + AL+ LK AKT ++K +
Sbjct: 545 CKEALKYLSQITAFAFNPQEEIQAFDC--LYFASLKEKAQIIALNALKAAKTPSEKLTWL 602
Query: 1003 KDLPKDLQKKVLAKESLKAYKDCVSKARNEKEKK-------------------------- 1036
L ++ + K S A KD + A++ +K+
Sbjct: 603 YRLGRNYYRLGDFKNSTLASKDALILAQSLNKKEFYDIAFVLFSDYMQNNEKGLALNLYA 662
Query: 1037 ------ECEKLLTPEAKKLLEEAK--KSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLL 1088
+ +K + KLLE K KSVK Y S K + K+ TP L
Sbjct: 663 FLEKHFKDDKRMALVYFKLLENEKDPKSVKIY--ATSLLKLQDAYKDYS--YTPFGEFAL 718
Query: 1089 EEAKESVKAYKDCVSKARNEKEKKECEKLLTPEAKK--LLEQQVLDCL-KNAKTEADKKR 1145
+A + K Y SKA +K +L + +K L+ +LD + AK++A ++
Sbjct: 719 IDAYRTTKDY----SKALETLDKLLNRRLSLEDHQKALYLQSSLLDLTNQKAKSKASLEK 774
Query: 1146 CVKDLPKD 1153
CV+ KD
Sbjct: 775 CVQLKQKD 782
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 37.0 bits (84), Expect = 0.005
Identities = 50/247 (20%), Positives = 102/247 (41%), Gaps = 33/247 (13%)
Query: 59 DGDKSEETQTQMDSEGNETSESSNGSLAD----KLFKKARKLVDNKKPFTQQKNLDEETQ 114
D K E Q Q ++E + +G + K ++ +K K+ Q+K E+ +
Sbjct: 97 DQSKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEK 156
Query: 115 ELNEEDDQE------NNEYQEETQTDLIDDETSKKTQQHSPQDLSN--EEATEANHFENL 166
+ E++ Q+ NN+ + E + + E K+ ++ +DL N E+ + NH +
Sbjct: 157 QKTEQEKQKTSNIETNNQIKVEQEQQKTEQE--KQKTNNTQKDLVNKAEQNCQENHNQFF 214
Query: 167 LKESKESSDHHLDNPTETQTNFDGDKSEETQTQMDSEGN-ETSESSNGSLADKLFKKARK 225
+K+ + ++ E +T K+ +T Q N + S GS A +L +K
Sbjct: 215 IKKLGIKAGIAIEIEAECKTP-KPTKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQK 273
Query: 226 LVDNKKPFTQQK----------------NLDEETQELNEEDDQENNEYQEETQTDLIDDE 269
+++ P++Q+ LD EE +EN + + + Q +++
Sbjct: 274 ELES-LPYSQKAIAKQVDFYRPSSIAYLELDPRDFNATEEWQKENLKIRSKAQAKMLEMR 332
Query: 270 TSKKTQQ 276
+ K Q
Sbjct: 333 SLKPDPQ 339
Score = 33.5 bits (75), Expect = 0.054
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 921 QAKNEAEKKECEKLLTLESKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKL 980
+ + E +K E EK T + K+K E+ K+ + + KTE EK++ + T K+
Sbjct: 123 ELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQ-----EKQKTEQEKQKTSNIETNNQIKV 177
Query: 981 LEQQALDCLKNAKTEADKKRCVKDLPKDLQKK 1012
++Q KTE +K++ + KDL K
Sbjct: 178 EQEQ-------QKTEQEKQK-TNNTQKDLVNK 201
Score = 32.3 bits (72), Expect = 0.12
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 28/145 (19%)
Query: 629 KARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKES 688
K EK+K E EK T + ++K EQ+ KT++E++K S+I
Sbjct: 130 KTEQEKQKTEQEKQKTEQEKQKTEQE------KQKTEQEKQK---------TSNIETNNQ 174
Query: 689 LKAYKDCVSQAKTEAEKKE---CEKLLTPEAKKLLEEE------AKESVKAYLDCVSQAK 739
+K ++ Q KTE EK++ +K L +A++ +E K +KA + +A+
Sbjct: 175 IKVEQE---QQKTEQEKQKTNNTQKDLVNKAEQNCQENHNQFFIKKLGIKAGIAIEIEAE 231
Query: 740 TEAEKKECEKLLTPEAKKKLEEAKK 764
+ K + TP K L +K+
Sbjct: 232 CKT-PKPTKTNQTPIQPKHLPNSKQ 255
Score = 32.3 bits (72), Expect = 0.12
Identities = 49/224 (21%), Positives = 93/224 (40%), Gaps = 37/224 (16%)
Query: 1063 CVSQAKTEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSKARNEKEKKECEKLLTPEA 1122
C + +++ E + +K EA + A +S + K EK+K E EK T +
Sbjct: 93 CFADDQSKKEVAQAQK----EAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQE 148
Query: 1123 KKLLEQQVLDCLKNAKTEADKKRCVK-------DLPKDLQKKVLAKESV-KAYLDCVSRA 1174
K+ EQ+ KTE +K++ + ++ QK K+ D V++A
Sbjct: 149 KQKTEQE------KQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKA 202
Query: 1175 RNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLE 1234
++ + + KKL +A +++ +C + + + + P +++
Sbjct: 203 EQNCQENHNQFFI----KKLGIKAGIAIEIEAECKTPKPTKTNQTPIQPKHLPNSKQPHS 258
Query: 1235 QEVKKS--IKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQV 1276
Q K+ + AYL +KE E L P ++K +AKQV
Sbjct: 259 QRGSKAQELIAYL-----------QKELESL--PYSQKAIAKQV 289
Score = 32.3 bits (72), Expect = 0.12
Identities = 33/151 (21%), Positives = 66/151 (42%), Gaps = 13/151 (8%)
Query: 207 TSESSNGSLADKLFKK----ARKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQEETQ 262
T+ N AD KK A+K +N + + ++ E +E ++ +QE + ++E Q
Sbjct: 86 TAMLMNVCFADDQSKKEVAQAQKEAENARDRANKSGIELEQEE--QKTEQEKQKTEQEKQ 143
Query: 263 TDLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNFD-GD 321
++ +KT+Q + ++ T N +K +E + T D +
Sbjct: 144 K---TEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVN 200
Query: 322 KSEEITDDSNDQEIIKGSKKKYIIGGIVVAV 352
K+E+ ++++Q I KK I GI + +
Sbjct: 201 KAEQNCQENHNQFFI---KKLGIKAGIAIEI 228
Score = 32.0 bits (71), Expect = 0.16
Identities = 27/123 (21%), Positives = 56/123 (44%), Gaps = 14/123 (11%)
Query: 189 DGDKSEETQTQMDSEGNETSESSNGSLAD----KLFKKARKLVDNKKPFTQQKNLDEETQ 244
D K E Q Q ++E + +G + K ++ +K K+ Q+K E+ +
Sbjct: 97 DQSKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEK 156
Query: 245 ELNEEDDQE------NNEYQEETQTDLIDDETSKKTQQHSPQDLSN--EEATEANHFENL 296
+ E++ Q+ NN+ + E + + E K+ ++ +DL N E+ + NH +
Sbjct: 157 QKTEQEKQKTSNIETNNQIKVEQEQQKTEQE--KQKTNNTQKDLVNKAEQNCQENHNQFF 214
Query: 297 LKE 299
+K+
Sbjct: 215 IKK 217
Score = 29.6 bits (65), Expect = 0.78
Identities = 43/197 (21%), Positives = 78/197 (38%), Gaps = 38/197 (19%)
Query: 1272 LAKQVLNCLEKAGNEEERKACLKNLPKDLQENILAKESLKAY--KDCLSQARNEEERRAC 1329
+ KQ+ GN + LK P + + ++ A C + ++++E
Sbjct: 47 IKKQIKKSDWICGNVKTADDYLKTHPNSWFNSAIGVTAITAMLMNVCFADDQSKKEVAQA 106
Query: 1330 EKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDK 1389
+K EA ++ K ++ + + EK+K E EK T + ++ +E +QK +
Sbjct: 107 QK----EAENARDRANKSGIELEQE-EQKTEQEKQKTEQEKQKTEQEKQKTEQE-KQKTE 160
Query: 1390 AIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQNL 1449
K N + N++ +K QE + KT++EK+K N
Sbjct: 161 QEKQKTSNIETNNQ---------------IKVEQEQQ-----------KTEQEKQKTNNT 194
Query: 1450 YSDLIQEIQNKRTQNKQ 1466
DL+ NK QN Q
Sbjct: 195 QKDLV----NKAEQNCQ 207
Score = 29.3 bits (64), Expect = 1.0
Identities = 56/229 (24%), Positives = 101/229 (43%), Gaps = 42/229 (18%)
Query: 698 QAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLT----- 752
+ + E +K E EK T + K+ E+E +++ + + KTE EK++ + T
Sbjct: 123 ELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQ------EKQKTEQEKQKTSNIETNNQIK 176
Query: 753 --PEAKKKLEEAKKSVKAYLDCVSRARNEKEKKECE---KLLTPEAKKLLEQQALDCLKN 807
E +K +E +K+ D V++A ++ + K L +A +E +A +C K
Sbjct: 177 VEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQENHNQFFIKKLGIKAGIAIEIEA-EC-KT 234
Query: 808 AKTDKERKKCL--KDLPKDLQ---KKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEA 862
K K + + K LP Q ++ + + AYL +KE E L P +
Sbjct: 235 PKPTKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYL-----------QKELESL--PYS 281
Query: 863 RKLLEEA----KKSVKAYLDCVSQ--AKTEAEKKECEKLLTPEARKLLE 905
+K + + + S AYL+ + TE +KE K+ + K+LE
Sbjct: 282 QKAIAKQVDFYRPSSIAYLELDPRDFNATEEWQKENLKIRSKAQAKMLE 330
>ref|NP_223038.1| putative [Helicobacter pylori J99]
Length = 112
Score = 37.0 bits (84), Expect = 0.005
Identities = 29/105 (27%), Positives = 52/105 (48%), Gaps = 9/105 (8%)
Query: 1016 KESLKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKE 1075
K+ L K + K NE +K L +++K+ E+A K V+ L + ++ ++E
Sbjct: 8 KDFLDFCKQTIHKNSNEAFQKTKRALFKEKSQKIREQAVKIVEKRLIKENMQLSDFNEEE 67
Query: 1076 CEKLLTPEARKLLEE--AKE-------SVKAYKDCVSKARNEKEK 1111
+ + E ++LLE+ AKE + K +K+ K NE+EK
Sbjct: 68 LKIMFEAEEKRLLEQIHAKELKEKQEKTTKHFKEVWEKGDNEQEK 112
Score = 32.0 bits (71), Expect = 0.16
Identities = 34/128 (26%), Positives = 57/128 (43%), Gaps = 26/128 (20%)
Query: 912 VKAYLDCVSQA----KNEAEKKECEKLLTLESKKKLEEAKKSVKAYLDCVSQAKTEAEKK 967
VK +LD Q NEA +K L +S+K E+A K V+ L + ++ ++
Sbjct: 7 VKDFLDFCKQTIHKNSNEAFQKTKRALFKEKSQKIREQAVKIVEKRLIKENMQLSDFNEE 66
Query: 968 ECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESLKAYKDCVS 1027
E + + E K+LLEQ K+L++K +++ K +K+
Sbjct: 67 ELKIMFEAEEKRLLEQIH--------------------AKELKEK--QEKTTKHFKEVWE 104
Query: 1028 KARNEKEK 1035
K NE+EK
Sbjct: 105 KGDNEQEK 112
Score = 31.6 bits (70), Expect = 0.21
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 1147 VKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYK 1206
VKD D K+ + K S +A+ EK +K E+ + K+L++E + +
Sbjct: 7 VKDF-LDFCKQTIHKNSNEAFQKTKRALFKEKSQKIREQAVKIVEKRLIKENMQLSDFNE 65
Query: 1207 DCLSQARNEEERRACEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNEKEK 1257
+ L EE+R E++ E L+++ +K+ K + + + NE+EK
Sbjct: 66 EELKIMFEAEEKRLLEQIHAKE----LKEKQEKTTKHFKEVWEKGDNEQEK 112
Score = 30.4 bits (67), Expect = 0.46
Identities = 26/106 (24%), Positives = 49/106 (45%), Gaps = 12/106 (11%)
Query: 835 VKAYLDCVSQA----KTEAEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKTEAEKK 890
VK +LD Q EA +K L +++K+ E+A K V+ L + ++ ++
Sbjct: 7 VKDFLDFCKQTIHKNSNEAFQKTKRALFKEKSQKIREQAVKIVEKRLIKENMQLSDFNEE 66
Query: 891 ECEKLLTPEARKLLE--------EXAKESVKAYLDCVSQAKNEAEK 928
E + + E ++LLE E +++ K + + + NE EK
Sbjct: 67 ELKIMFEAEEKRLLEQIHAKELKEKQEKTTKHFKEVWEKGDNEQEK 112
Score = 28.1 bits (61), Expect = 2.3
Identities = 32/141 (22%), Positives = 53/141 (36%), Gaps = 37/141 (26%)
Query: 1193 KLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSIKAYLDCVSRAR 1252
K++ + K+ L K + + NE ++ L +++K+ EQ VK + R
Sbjct: 2 KIMHQVKDFLDFCKQTIHKNSNEAFQKTKRALFKEKSQKIREQAVK---------IVEKR 52
Query: 1253 NEKEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENILAKE---- 1308
KE + NEEE K + K L E I AKE
Sbjct: 53 LIKENMQLSDF---------------------NEEELKIMFEAEEKRLLEQIHAKELKEK 91
Query: 1309 ---SLKAYKDCLSQARNEEER 1326
+ K +K+ + NE+E+
Sbjct: 92 QEKTTKHFKEVWEKGDNEQEK 112
Score = 27.7 bits (60), Expect = 3.0
Identities = 28/95 (29%), Positives = 44/95 (45%), Gaps = 6/95 (6%)
Query: 728 VKAYLDCVSQA----KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSRARNEKEKK 783
VK +LD Q EA +K L +++K E+A K V+ L + ++ ++
Sbjct: 7 VKDFLDFCKQTIHKNSNEAFQKTKRALFKEKSQKIREQAVKIVEKRLIKENMQLSDFNEE 66
Query: 784 ECEKLLTPEAKKLLEQQALDCL--KNAKTDKERKK 816
E + + E K+LLEQ L K KT K K+
Sbjct: 67 ELKIMFEAEEKRLLEQIHAKELKEKQEKTTKHFKE 101
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 36.2 bits (82), Expect = 0.008
Identities = 45/218 (20%), Positives = 82/218 (36%), Gaps = 25/218 (11%)
Query: 3 EENDKLETSKKAQQDSPQDLSNEEATEANHF---ENLLKESKESSDHHL----------- 48
+EN+ E KK Q + Q+L + T + + KE+KE + +
Sbjct: 115 KENEIEEVVKKLQAITSQNLEGAKETSGTKEAPEKEVKKENKEKAKEEVKANKTPTTENL 174
Query: 49 --DNPTETQTHFD--GDKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFT 104
DNP + D +EE + +++ N+ E ADK + +K D KP
Sbjct: 175 TSDNPLADEPDLDYANMSAEEVEAEIERLLNKRQE------ADKERRAQKKQEDQAKP-K 227
Query: 105 QQKNLDEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFE 164
Q+ +ET + + + ET+ D K + + +H
Sbjct: 228 QEVAPAKETPKTETPKTETRKVPKAETKAKAKADTEENKAPSIGVEQTVRVDVRRLDHLM 287
Query: 165 NLLKESKESSDHHLDNPTETQTNFDGDKSEETQTQMDS 202
NL+ E + + ++ + +DG+K E Q+ S
Sbjct: 288 NLIGELVLGKNRLIRIYSDVEERYDGEKFLEELNQVVS 325
Score = 33.9 bits (76), Expect = 0.041
Identities = 40/198 (20%), Positives = 73/198 (36%), Gaps = 15/198 (7%)
Query: 138 DETSKKTQQHSPQDLSNEEATEANHF---ENLLKESKESSDHHLD-NPTETQTNFDGDKS 193
+E KK Q + Q+L + T + + KE+KE + + N T T N D
Sbjct: 120 EEVVKKLQAITSQNLEGAKETSGTKEAPEKEVKKENKEKAKEEVKANKTPTTENLTSDNP 179
Query: 194 EETQTQMDSEGNETSESSNGSL---------ADKLFKKARKLVDNKKPFTQQKNLDEETQ 244
+ +D N ++E + ADK + +K D KP Q+ +ET
Sbjct: 180 LADEPDLDY-ANMSAEEVEAEIERLLNKRQEADKERRAQKKQEDQAKP-KQEVAPAKETP 237
Query: 245 ELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESS 304
+ + + ET+ D K + + +H NL+ E
Sbjct: 238 KTETPKTETRKVPKAETKAKAKADTEENKAPSIGVEQTVRVDVRRLDHLMNLIGELVLGK 297
Query: 305 DHHLDNPTETQTNFDGDK 322
+ + ++ + +DG+K
Sbjct: 298 NRLIRIYSDVEERYDGEK 315
Score = 33.9 bits (76), Expect = 0.041
Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 18/159 (11%)
Query: 994 TEADKKRCVKDLPKDLQKKVLAKESLKAYKDC----------VSKARNEKEKKECEKLLT 1043
T K+ ++++ K LQ + ++L+ K+ V K EK K+E + T
Sbjct: 111 TNNGKENEIEEVVKKLQ--AITSQNLEGAKETSGTKEAPEKEVKKENKEKAKEEVKANKT 168
Query: 1044 PEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVS 1103
P + L + + + LD + + E E E E+LL +EA + +A K
Sbjct: 169 PTTENLTSDNPLADEPDLDYANMSAEEVE-AEIERLLNKR-----QEADKERRAQKKQED 222
Query: 1104 KARNEKEKKECEKLLTPEAKKLLEQQVLDCLKNAKTEAD 1142
+A+ ++E ++ E K ++V AK +AD
Sbjct: 223 QAKPKQEVAPAKETPKTETPKTETRKVPKAETKAKAKAD 261
Score = 32.0 bits (71), Expect = 0.16
Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 33/296 (11%)
Query: 833 ESVKAYLDCVSQAKTEAEKKECEKLLTPEA---RKLLEEAKKSVKAYLDCVSQAKTEAEK 889
E V L ++ E K+ PE ++ E+AK+ VKA E
Sbjct: 120 EEVVKKLQAITSQNLEGAKETSGTKEAPEKEVKKENKEKAKEEVKA------NKTPTTEN 173
Query: 890 KECEKLLTPEARKLLEEXAKESVKAYLDCVSQAKNEAEKKECEKLLTLESKKKLEEAKKS 949
+ L E + E V+A ++ + + EA+K+ ++KK E+ K
Sbjct: 174 LTSDNPLADEPDLDYANMSAEEVEAEIERLLNKRQEADKER-------RAQKKQEDQAKP 226
Query: 950 VKAYLDCVSQAKTEAEKKECEKLLTPE----AKKLLEQQALDCLKNAKTEADKKRCVKDL 1005
+ KTE K E K+ E AK E+ + +T R + L
Sbjct: 227 KQEVAPAKETPKTETPKTETRKVPKAETKAKAKADTEENKAPSIGVEQTVRVDVRRLDHL 286
Query: 1006 PKDLQKKVLAKESL-KAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCV 1064
+ + VL K L + Y D + EK +E L + S+ A +
Sbjct: 287 MNLIGELVLGKNRLIRIYSDVEERYDGEKFLEE------------LNQVVSSISAVTTDL 334
Query: 1065 SQAKTEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSKARNEKEKKECEKLLTP 1120
A + + K+ R + + ++E K+ + + E +K E++ P
Sbjct: 335 QLAVMKTRMQPVGKVFNKFPRMVRDLSRELGKSIELIIEGEETELDKSIVEEIGDP 390
Score = 30.4 bits (67), Expect = 0.46
Identities = 43/177 (24%), Positives = 71/177 (39%), Gaps = 5/177 (2%)
Query: 679 LQSDILAKESLKAYKDCVSQAKT--EAEKKECEKLLTPEAKKLLE--EEAKESVKAYLDC 734
L+S L K L +D S E E +E K L + LE +E + +A
Sbjct: 91 LRSIDLMKTLLVTIRDTGSDTNNGKENEIEEVVKKLQAITSQNLEGAKETSGTKEAPEKE 150
Query: 735 VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSRARNEKEKKECEKLLTPEAK 794
V + E K+E + TP + + + + LD + + E E E E+LL +
Sbjct: 151 VKKENKEKAKEEVKANKTPTTENLTSDNPLADEPDLDYANMSAEEVEA-EIERLLNKRQE 209
Query: 795 KLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEK 851
E++A ++ K+ K+ PK K ++ KA ++A TE K
Sbjct: 210 ADKERRAQKKQEDQAKPKQEVAPAKETPKTETPKTETRKVPKAETKAKAKADTEENK 266
Score = 26.6 bits (57), Expect = 6.6
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 1577 EPDIAKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKAENNKIDKDVAET 1636
E +I + + + I +NLE AK G K+ +KE K++ +AK E + + T
Sbjct: 116 ENEIEEVVKKLQAITSQNLEG--AKETSGTKEAPEKEVKKENKEKAKEE---VKANKTPT 170
Query: 1637 AKNI-SEIALKNKKE-----KSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTF 1690
+N+ S+ L ++ + S E V+ + +K++ ++ + KQ K
Sbjct: 171 TENLTSDNPLADEPDLDYANMSAEEVEAEIERLLNKRQEADKERRAQKKQEDQAKPKQEV 230
Query: 1691 VLAQYTP 1697
A+ TP
Sbjct: 231 APAKETP 237
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 36.2 bits (82), Expect = 0.008
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 428 NIAEIEDKNPLRAFYECISNGGNYEECLKLI--KDKKLQDQMKKTLEAYNDCIKNAKTEE 485
N E E+KNPL E + + +Y+E LI K+L++++K+ EA K+ +E
Sbjct: 1803 NAHETENKNPLDKAQELLESLSSYDEKGNLIAPSKKELENELKEK-EA-----KSVNLDE 1856
Query: 486 ERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIR 538
E K ++ + L+ Q + + +AKT+E++ + K +N +R
Sbjct: 1857 EIAKGCSFDVYSDVLRHLVQMGIPQNEIAFIHDAKTEEQKQDLFKKLNRGGVR 1909
Score = 33.5 bits (75), Expect = 0.054
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 234 TQQKNLDEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEEAT--EAN 291
TQ+ + + + ELN +Q E + QT + TQ+ + Q+ + +E T E +
Sbjct: 345 TQESKITDNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQD 404
Query: 292 HFENLLKESKESSDHHLDNPTETQTNFDGDKSEEITDDSNDQEIIKGSKKKY 343
EN K+ + P + +F SEE+ +IKG+K +Y
Sbjct: 405 TQENAPTTIKQETPITPAIPLNPKIDF--KPSEEV--------LIKGAKTRY 446
Score = 33.1 bits (74), Expect = 0.070
Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 23/153 (15%)
Query: 457 LIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKC----LDLIKDE-----NLKKSLLNQQ 507
+I++ KL+ ++K Y K EE +K LD +K E L++S++
Sbjct: 2030 IIEEVKLRAEIKSEESKYKAFNKEHYFNEESLKNNASKLDYLKQELKDLETLQRSVIIPT 2089
Query: 508 KVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELELQKELQEYKDCIKNAKTEAEK 567
++ L LKN E ++ +LI E+ E ++ + +EL K E+
Sbjct: 2090 HTEIKLYDLKN-----EESKDYELIKVKEV-EPLKENASMSEELTH--------KKLKEQ 2135
Query: 568 NKCLKGLSKEAIERLKQQALDCLKNAKTDEERN 600
NK + +KE ++ +K+Q L +EE +
Sbjct: 2136 NKQIAEQNKEKLDAIKKQFASNLNTLFVNEEED 2168
Score = 32.7 bits (73), Expect = 0.092
Identities = 56/288 (19%), Positives = 115/288 (39%), Gaps = 58/288 (20%)
Query: 38 KESKESSDHHLDNPTETQTHFDGDKS--EETQTQMDSEGNETSESSNGSLADKLFKKARK 95
+ ++ SD+ LD ++ + + +GDKS + +S +E + GS + A+
Sbjct: 147 ENQRKRSDNELDRRSD-KANENGDKSPRQNGSANQESARSERYGIAQGSSNQSVLLPAQS 205
Query: 96 LVDNKKPFTQ------QKNLDEETQELNEEDDQE-------NNEYQEETQ---------- 132
+ + Q ++N D+E + L+ D+ E NN E
Sbjct: 206 RLHHAGLSAQNGLRDLEENRDQEGRLLSNLDNLESLLNAIRNNTIASEPDFRSRLLEAIQ 265
Query: 133 -----------TDLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLD-- 179
L+ D T+K +S ++ E EN LK+S E+++ L+
Sbjct: 266 NNDPLKDSIVGAQLLKDPTTKIFYDKFQLKISPKKVLEI--LENRLKKSIETTNETLNAF 323
Query: 180 NPTETQTNFDGDKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNL 239
N ++Q +D S N + K+ + +L + ++ Q++
Sbjct: 324 NVLDSQA-------------IDLNAISNSVGLNPTQESKITDNSVELNNAQEQTAQEQTT 370
Query: 240 DEETQELNEEDDQENNEYQEETQTDLIDDETSKK--TQQHSPQDLSNE 285
E+T + E+ QE ++ TQ ++T+++ TQ+++P + E
Sbjct: 371 QEQTTQ--EQTTQEQTTQEQTTQEQTTQEQTTQEQDTQENAPTTIKQE 416
>ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helicobacter pylori J99]
Length = 258
Score = 35.8 bits (81), Expect = 0.011
Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 24/228 (10%)
Query: 11 SKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDGDKSEETQTQM 70
S + +PQ+ ++A E + + LLK++ E S H + + Q F+ EE++ +
Sbjct: 39 SASLETPNPQEPLEKKAIENDLIDCLLKKTDELSSHLV----KLQMQFE-KAQEESKVLI 93
Query: 71 DSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEDDQ----ENNE 126
++ N+ + FK+ + + N+ + + ++ + D++ EN+
Sbjct: 94 ENAKNDGYKIG--------FKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKSSENHL 145
Query: 127 YQEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHH-----LDNP 181
E + I + +K+ +D S + A E LLK +++D H LD P
Sbjct: 146 MALEKELSAIAIDIAKEVILKEVEDNSQKVALAL--AEELLKNVLDATDIHLKVNPLDYP 203
Query: 182 TETQTNFDGDKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDN 229
+ + K + + S+G SSNGSL L ++ + L ++
Sbjct: 204 YLNEHLQNASKIKLESNEAISKGGVMITSSNGSLDGNLMERFKTLKES 251
Score = 29.6 bits (65), Expect = 0.78
Identities = 45/213 (21%), Positives = 94/213 (44%), Gaps = 22/213 (10%)
Query: 106 QKNLDEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFEN 165
+KNL ++ LN+ D Q+ E++ + S + +PQ+ ++A E + +
Sbjct: 6 RKNLIQK-DHLNKHDIQKY-EFKSMANLPPKTNPNSASLETPNPQEPLEKKAIENDLIDC 63
Query: 166 LLKESKESSDHHLDNPTETQTNFDGDKSEETQTQMDSEGNETSESSNGSLADKLFKKARK 225
LLK++ E S H + + Q F+ EE++ +++ N+ + FK+ +
Sbjct: 64 LLKKTDELSSHLV----KLQMQFE-KAQEESKVLIENAKNDGYKIG--------FKEGEE 110
Query: 226 LVDNKKPFTQQKNLDEETQELNEEDDQ----ENNEYQEETQTDLIDDETSKKTQQHSPQD 281
+ N+ + + ++ + D++ EN+ E + I + +K+ +D
Sbjct: 111 KMRNELTHSVNEEKNQLLHAITALDEKMKSSENHLMALEKELSAIAIDIAKEVILKEVED 170
Query: 282 LSNEEATEANHFENLLKESKESSDHHLD-NPTE 313
S + A E LLK +++D HL NP +
Sbjct: 171 NSQKVALAL--AEELLKNVLDATDIHLKVNPLD 201
Score = 28.9 bits (63), Expect = 1.3
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 18/142 (12%)
Query: 513 LDCLKNAKTDEERNECLKLINDPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNKCLK 572
+DCL KTDE + +KL +++ +K +E K I+NAK + K +
Sbjct: 61 IDCLLK-KTDELSSHLVKL------------QMQFEKAQEESKVLIENAKNDGYKIGFKE 107
Query: 573 GLSK---EAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSK 629
G K E + ++ L +E+ + +N L+KEL A +++ K+ + K
Sbjct: 108 GEEKMRNELTHSVNEEKNQLLHAITALDEKMKSSENHLMALEKELSA-IAIDIAKEVILK 166
Query: 630 ARNEKEKQECEKLLTPEARKKL 651
E Q+ L E K +
Sbjct: 167 -EVEDNSQKVALALAEELLKNV 187
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 35.4 bits (80), Expect = 0.014
Identities = 34/127 (26%), Positives = 60/127 (46%), Gaps = 7/127 (5%)
Query: 1006 PKDLQKKVLAKESLKAYKDCVSKARNEKEKKECEKLLTPEAKK-----LLEEAKKSVKAY 1060
P LQ++ AKE+ + ++ K RN ++E K PE K + + K+ ++
Sbjct: 413 PIYLQERHKAKENKQPLEENKVKPRNSGFEEEEVKTRRPEPTKDQNNAIQQGETKNNESK 472
Query: 1061 LDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSKARNEKEKKECEKLLTP 1120
+S K A KKE K + E ++ L+E K+ KA + + +E +E ++
Sbjct: 473 NTPIS--KENAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELE 530
Query: 1121 EAKKLLE 1127
E +K LE
Sbjct: 531 ERRKALE 537
Score = 32.7 bits (73), Expect = 0.092
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 1/125 (0%)
Query: 640 EKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQA 699
E+ E ++ LE+ + + +EE K + KD + I E+ +
Sbjct: 418 ERHKAKENKQPLEENKVKPRNSGFEEEEVKTRRPEPTKDQNNAIQQGETKNNESKNTPIS 477
Query: 700 KTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKL 759
K A KKE K + E K+ L+EE K+ KA + E +E ++ E +K L
Sbjct: 478 KENAAKKEAPKPSSKEEKRRLKEE-KKKAKAEQRAREFEQRAREHQERDEKELEERRKAL 536
Query: 760 EEAKK 764
E KK
Sbjct: 537 EMNKK 541
>ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99]
Length = 620
Score = 35.4 bits (80), Expect = 0.014
Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 27/162 (16%)
Query: 113 TQELNEEDDQENNEYQEETQTDLIDDETSKKTQQ---HSPQDLSNEEATEA-NHFENLLK 168
T +++ ++ E + + L D E K + H +D +E EA NH ++L
Sbjct: 479 TVSAQDKNTGKSQEIKISGSSGLSDSEIEKMVKDAELHKEEDARKKEVIEARNHADSLAH 538
Query: 169 ESKESSDHHLDNPTETQTNFDGDKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVD 228
++++S D H +TN + + + E Q +++ + ++ N + A+ L D
Sbjct: 539 QTQKSLDEH-------KTNLNENDANEIQNAINAL-KDCIKNDNATKAE--------LED 582
Query: 229 NKKPFTQQKNLDEETQELNEEDDQENN-EYQEETQTDLIDDE 269
K TQ Q+L E +NN E ++ D+ID E
Sbjct: 583 KTKALTQ------AAQKLGEAMANKNNAEQPKKKDDDVIDAE 618
Score = 32.3 bits (72), Expect = 0.12
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 243 TQELNEEDDQENNEYQEETQTDLIDDETSKKTQQ---HSPQDLSNEEATEA-NHFENLLK 298
T +++ ++ E + + L D E K + H +D +E EA NH ++L
Sbjct: 479 TVSAQDKNTGKSQEIKISGSSGLSDSEIEKMVKDAELHKEEDARKKEVIEARNHADSLAH 538
Query: 299 ESKESSDHHLDNPTETQTN 317
++++S D H N E N
Sbjct: 539 QTQKSLDEHKTNLNENDAN 557
Score = 30.0 bits (66), Expect = 0.60
Identities = 32/130 (24%), Positives = 59/130 (44%), Gaps = 24/130 (18%)
Query: 12 KKAQQDSPQDLSNEEATEA-NHFENLLKESKESSDHHLDNPTETQTHFDGDKSEETQTQM 70
K A+ +D +E EA NH ++L ++++S D H +T+ + + + E Q +
Sbjct: 511 KDAELHKEEDARKKEVIEARNHADSLAHQTQKSLDEH-------KTNLNENDANEIQNAI 563
Query: 71 DSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEDDQENN-EYQE 129
++ + ++ N + A+ L D K TQ Q+L E +NN E +
Sbjct: 564 NAL-KDCIKNDNATKAE--------LEDKTKALTQ------AAQKLGEAMANKNNAEQPK 608
Query: 130 ETQTDLIDDE 139
+ D+ID E
Sbjct: 609 KKDDDVIDAE 618
Score = 29.3 bits (64), Expect = 1.0
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 21/118 (17%)
Query: 1340 LLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNAD 1399
L + E++K VK D + KKE EAR Q K++ + N +
Sbjct: 501 LSDSEIEKMVK---DAELHKEEDARKKE-----VIEARNHADSLAHQTQKSLDEHKTNLN 552
Query: 1400 PNDRAAIMKCLDGLSD------------EEKLKYLQEAREKAVADCLAMAKTDEEKRK 1445
ND I ++ L D E+K K L +A +K + + +A E+ +K
Sbjct: 553 ENDANEIQNAINALKDCIKNDNATKAELEDKTKALTQAAQK-LGEAMANKNNAEQPKK 609
Score = 27.3 bits (59), Expect = 3.9
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 106 QKNLDEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLSN--EEATEANHF 163
QK+LDE LNE D E + + +D +K + + L+ ++ EA
Sbjct: 541 QKSLDEHKTNLNENDANEIQNAINALKDCIKNDNATKAELEDKTKALTQAAQKLGEAMAN 600
Query: 164 ENLLKESKESSDHHLDNPTE 183
+N ++ K+ D +D E
Sbjct: 601 KNNAEQPKKKDDDVIDAEVE 620
Score = 26.6 bits (57), Expect = 6.6
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 485 EERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKE 544
E+ +K +L K+E+ +K + + + D L + +T + +E +N+ + E
Sbjct: 507 EKMVKDAELHKEEDARKKEVIEARNHA--DSLAH-QTQKSLDEHKTNLNENDANE----- 558
Query: 545 LELQKELQEYKDCIKNAK-TEAEKNKCLKGLSKEA 578
+Q + KDCIKN T+AE K L++ A
Sbjct: 559 --IQNAINALKDCIKNDNATKAELEDKTKALTQAA 591
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 34.7 bits (78), Expect = 0.024
Identities = 72/264 (27%), Positives = 101/264 (37%), Gaps = 50/264 (18%)
Query: 719 LLEEEAKESVKAY---LDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSR 775
LL+ + KA+ LD + T EK E E+ + LE+ K+ K D R
Sbjct: 141 LLDGYIQNKNKAFSPLLDALETKFTRLEKLERER-------RSLEDKKRFQK---DLEER 190
Query: 776 ARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESV 835
EK K E L E ++LLEQ+ L K DK D+ ++ K A ESV
Sbjct: 191 LNFEKMKLERLDLKEDEYERLLEQKKLLSSKEKLNDK--IALALDVLENTHKITHALESV 248
Query: 836 KAYLDCVSQA---------KTEAEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAK-- 884
+ + A K +A+ +ECE+L + + L +K Y ++ AK
Sbjct: 249 GHSAEFLKSALLEAGALLEKEQAKLEECERLDIEKVLEKLGMLSGIIKDY-GSIAHAKER 307
Query: 885 -----------------TEAEKKECEKLLTPEARKLLEEXAKESVKAYLDCVSQAKNEAE 927
E KE E+L T E KL EE + K YL N
Sbjct: 308 LGHVKNELHNLKEIDHHCETYHKEIERLKT-ECLKLCEEISGFR-KEYL----AGFNALL 361
Query: 928 KKECEKLLTLESKKKLEEAKKSVK 951
+ + LL LEEA S K
Sbjct: 362 SAKAKDLLLKSPSLVLEEAPMSEK 385
Score = 29.3 bits (64), Expect = 1.0
Identities = 89/370 (24%), Positives = 144/370 (38%), Gaps = 68/370 (18%)
Query: 909 KESVKAYLDCVSQAKN--EAEKKECEKLLTLESKKKLEEAKKSVKAYLDCVSQAKTEAEK 966
KE + +L+ S +KN +A K K L+ + + E + + LD Q K +A
Sbjct: 95 KEKTRYFLNQTSLSKNTLKALLKGLIKRLSNDRFSQNELNDILMLSLLDGYIQNKNKAFS 154
Query: 967 KECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESLKAYKDCV 1026
+ L T K + L+ + ++ DKKR KDL + L + + E L +D
Sbjct: 155 PLLDALET----KFTRLEKLE--RERRSLEDKKRFQKDLEERLNFEKMKLERLDLKED-- 206
Query: 1027 SKARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARK 1086
E E+LL E KKLL +K D ++ A E T +
Sbjct: 207 ----------EYERLL--EQKKLLSSKEK----LNDKIALALDVLEN-------THKITH 243
Query: 1087 LLEEAKESVKAYKDCVSKA-----RNEKEKKECEKLLTPEAKKLLEQ--QVLDCLKNAKT 1139
LE S + K + +A + + + +ECE+L + +K+LE+ + +K+ +
Sbjct: 244 ALESVGHSAEFLKSALLEAGALLEKEQAKLEECERL---DIEKVLEKLGMLSGIIKDYGS 300
Query: 1140 EADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEK-------------- 1185
A K + + +L + Y + R + E K CE+
Sbjct: 301 IAHAKERLGHVKNELHNLKEIDHHCETYHKEIERLKTEC-LKLCEEISGFRKEYLAGFNA 359
Query: 1186 LLTPEAKKL--------LEEAKESLKAYKDCLSQARNE--EERRACEKLLTPEARKLLEQ 1235
LL+ +AK L LEEA S K + + +N E + E A LLE
Sbjct: 360 LLSAKAKDLLLKSPSLVLEEAPMSEKGAQKLVLHLQNSQLETLSSGEYSRLRLAFMLLEM 419
Query: 1236 EVKKSIKAYL 1245
E K K L
Sbjct: 420 EFLKDFKGVL 429
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 34.7 bits (78), Expect = 0.024
Identities = 55/234 (23%), Positives = 95/234 (40%), Gaps = 36/234 (15%)
Query: 90 FKKARKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSP 149
F+ A++L + T K+ +++ L E D Y + +DLI K
Sbjct: 597 FRSAKEL----RKLTPLKDKNKKANYLEEPDFIVQKTYYK---SDLIPKHLIK------- 642
Query: 150 QDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNFDGDKSEET------------- 196
Q +E E EN L E + D ++ + + FDG K E+
Sbjct: 643 QRFFEKETKELEELENALNEKEALLDEFIEEHSNEEGLFDGLKINESVLKKELKNATDLE 702
Query: 197 QTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEDDQENNE 256
Q+ E E+ N +L K+ KA + ++ K F Q KNL E+NE D +
Sbjct: 703 DKQILKTALEWLEAKNKAL--KMKNKAYEELE-LKAFHQYKNL-----EINEIKDLIIKD 754
Query: 257 YQEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDN 310
+ + ++++ K+T + L+ ++ +N L KE KES L++
Sbjct: 755 KWLNSLKNALENKIQKRTNAFA-SALNEIISSYSNSLLELDKEVKESESKVLEH 807
Score = 32.0 bits (71), Expect = 0.16
Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 22/174 (12%)
Query: 20 QDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDGDKSEET------------- 66
Q +E E EN L E + D ++ + + FDG K E+
Sbjct: 643 QRFFEKETKELEELENALNEKEALLDEFIEEHSNEEGLFDGLKINESVLKKELKNATDLE 702
Query: 67 QTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEDDQENNE 126
Q+ E E+ N +L K+ KA + ++ K F Q KNL E+NE D +
Sbjct: 703 DKQILKTALEWLEAKNKAL--KMKNKAYEELE-LKAFHQYKNL-----EINEIKDLIIKD 754
Query: 127 YQEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDN 180
+ + ++++ K+T + L+ ++ +N L KE KES L++
Sbjct: 755 KWLNSLKNALENKIQKRTNAFA-SALNEIISSYSNSLLELDKEVKESESKVLEH 807
Score = 27.7 bits (60), Expect = 3.0
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 22/126 (17%)
Query: 220 FKKARKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSP 279
F+ A++L + T K+ +++ L E D Y + +DLI K
Sbjct: 597 FRSAKEL----RKLTPLKDKNKKANYLEEPDFIVQKTYYK---SDLIPKHLIK------- 642
Query: 280 QDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNFDGDKSEEI--------TDDSN 331
Q +E E EN L E + D ++ + + FDG K E D
Sbjct: 643 QRFFEKETKELEELENALNEKEALLDEFIEEHSNEEGLFDGLKINESVLKKELKNATDLE 702
Query: 332 DQEIIK 337
D++I+K
Sbjct: 703 DKQILK 708
>ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99]
Length = 688
Score = 34.7 bits (78), Expect = 0.024
Identities = 46/193 (23%), Positives = 80/193 (40%), Gaps = 23/193 (11%)
Query: 820 DLPKDLQKKVLAKESVKAYLDCVSQAKTEAE----KKECEKLLTPEARKL----LEEAKK 871
D+ DLQ L S +L ++ K+ + + + E ++ P A L L+
Sbjct: 117 DIENDLQVSALNAASATLFLAHIAPIKSVSACRIARVDNEFIINPSASLLNQSSLDLFVS 176
Query: 872 SVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEXAKESVKAYLDCVSQAKNEAEKKE- 930
K L+ + + E+ L EA +L ++ KE+ Y + + +NE KE
Sbjct: 177 GTKESLNMIEMRSLGQKLNALEEPLMLEALELAQKSLKETCALYEEAFTPYQNELLFKEG 236
Query: 931 -----CEKLLTLESKKKLEEAKKSVKAYLDCVSQAKTEAE---KKECEKLLTPEAKKLLE 982
E+LL L + +E K ++ S A +E E K+ +K+ ++ LE
Sbjct: 237 EGIVLNERLLDLLKNQYFDEIIKGIE------SSALSERENVFKEVAKKISEAHSEFSLE 290
Query: 983 QQALDCLKNAKTE 995
+ L K KTE
Sbjct: 291 EIELSLEKVKKTE 303
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 34.7 bits (78), Expect = 0.024
Identities = 49/214 (22%), Positives = 99/214 (45%), Gaps = 38/214 (17%)
Query: 1215 EEERRACEKLLTPEARKLLEQ-----EVKKSIKAYLDCVSRARNEKEKKECEKLLTPEAR 1269
EE RA + +A L +Q +++ I A + + +K+ KE +LLT ++
Sbjct: 86 EESLRALKASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQL--DKQNKEMSELLTKLSQ 143
Query: 1270 KFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENILAKES--LKAYKDCLSQARNEEERR 1327
+++ L ++KA E+E KA K L+ + A ++ LKA + +E++
Sbjct: 144 DLVSQIAL--IQKALKEQEEKA-----EKPLKSSTPANKNPPLKA------ETPKNQEKK 190
Query: 1328 ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAR-------KFL 1380
EK A+ ++++ K + + + +S RN+ + E+LL EA +++
Sbjct: 191 TQEK-----AKVEFDKDLSKQKEIFQEALSFFRNKSYAEAKERLLWLEANSYRLYYVRYV 245
Query: 1381 AKELQQKDKAIKDCLK----NADPNDRAAIMKCL 1410
E+ +K ++ +K +A N +A+ M L
Sbjct: 246 LGEVAYGEKRYREAIKYYKESALLNQKASYMPVL 279
Score = 32.0 bits (71), Expect = 0.16
Identities = 37/173 (21%), Positives = 78/173 (44%), Gaps = 8/173 (4%)
Query: 1125 LLEQQVLDCLK-NAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKEC 1183
L +++ L LK + + +A+ + +DL+ ++ A + LD ++ +E K
Sbjct: 83 LSQEESLRALKASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSELLTKLS 142
Query: 1184 EKLLTPEA---KKLLEEAKESLKAYKDCLSQARNE----EERRACEKLLTPEARKLLEQE 1236
+ L++ A K L E+ +++ K K +N E + EK +A+ +++
Sbjct: 143 QDLVSQIALIQKALKEQEEKAEKPLKSSTPANKNPPLKAETPKNQEKKTQEKAKVEFDKD 202
Query: 1237 VKKSIKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEER 1289
+ K + + + +S RN+ + E+LL EA + V L + E+R
Sbjct: 203 LSKQKEIFQEALSFFRNKSYAEAKERLLWLEANSYRLYYVRYVLGEVAYGEKR 255
Score = 31.6 bits (70), Expect = 0.21
Identities = 56/249 (22%), Positives = 93/249 (36%), Gaps = 43/249 (17%)
Query: 678 DLQSDILAKE--SLKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEAKESVK----AY 731
DLQS KE L+ S T+ + L+ E + + E +K A
Sbjct: 23 DLQSGATKKELKQLQVNSKNFSNILTKIHSQVEANTLSQEGLRSVYEGQANKIKDLNNAI 82
Query: 732 LDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSRARNEKEKKECEKLLTP 791
L + +E + + + LE+ + + A + + +K+ KE +LLT
Sbjct: 83 LSQEESLRALKASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQL--DKQNKEMSELLTK 140
Query: 792 EAKKLLEQQALDCLKNAKTDKERKKCLK-------------DLPKDLQKKVLAKESVKAY 838
++ L+ Q AL + +++ +K LK + PK+ +KK K V+
Sbjct: 141 LSQDLVSQIALIQKALKEQEEKAEKPLKSSTPANKNPPLKAETPKNQEKKTQEKAKVEFD 200
Query: 839 LDCVSQA------------KTEAEKKECEKLLTPEA--------RKLLEEAKKSVKAYLD 878
D Q K+ AE K E+LL EA R +L E K Y +
Sbjct: 201 KDLSKQKEIFQEALSFFRNKSYAEAK--ERLLWLEANSYRLYYVRYVLGEVAYGEKRYRE 258
Query: 879 CVSQAKTEA 887
+ K A
Sbjct: 259 AIKYYKESA 267
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter pylori
J99]
Length = 991
Score = 34.3 bits (77), Expect = 0.032
Identities = 66/345 (19%), Positives = 135/345 (39%), Gaps = 52/345 (15%)
Query: 913 KAYLDCVSQAKNEAEKKECEKLLTLES---KKKLEEAKKSVKAYLDCVSQAKTEAEKKEC 969
+A+ D + A E+++ + L++ +S KKKLEE + +K+ + V + K E
Sbjct: 663 EAHSDYTNGAFENYEREDIQGLISDKSQKIKKKLEETRDQLKSLCESVKEPKDEE----- 717
Query: 970 EKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLP----------KDLQKKVLAKESL 1019
+ A C N + A K+R L +L+K + +KE
Sbjct: 718 ------------DYIAYFCGDNLEKNAQKRRLFYQLVGAFLRMFVELNNLEKPIYSKEET 765
Query: 1020 KAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKL 1079
+ K R+ ++ + + K E+ ++ + AY+ + + E L
Sbjct: 766 QQIKQEAGFYRHLQKVVGLSSGDSVDLKSYNEDMRRILDAYI----------KTTDSEVL 815
Query: 1080 LTPEARKLLEE-AKESVKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEQQVLDCLKNAK 1138
E + L E A+ + + +S+ + E E + K+++E++ D K
Sbjct: 816 FQIEDQGLCEVLAQMDINDFNKALSQV-FKNESSMAESIANNTRKRIIEKEASD----PK 870
Query: 1139 TEADKKRCVKDLPKDL-QKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLE- 1196
+ DL +KK+ E ++ D + +++++ +K+ T K L +
Sbjct: 871 YYEKLSSLLNDLILQFREKKLTYLEYLQQIQDLAKKVIDKEDRNYPKKINTKALKTLYDN 930
Query: 1197 -EAKESLKAYKDCLSQARNEE---ERRACEKLLTPEARKLLEQEV 1237
+ E+L D + ++ EK L RK++ EV
Sbjct: 931 LDENEALALETDACIRGNKKDGWVGHNQKEKNLKIALRKIINDEV 975
Score = 31.6 bits (70), Expect = 0.21
Identities = 84/421 (19%), Positives = 172/421 (39%), Gaps = 86/421 (20%)
Query: 624 KDCVSKARNEKEKQECE-KLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSD 682
KDC S E K K+L +K E++ L+ +K + +EE KK + P ++
Sbjct: 545 KDCGSNESEESYKYRAYCKMLQNFFNEKDEKKALNKIK--EFEEEVKKRFINEPARMKLL 602
Query: 683 ILAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKL--LEEEAKES------------- 727
I+ + L + D S +K+ + L ++ L+ E K+
Sbjct: 603 IVVDKLLTGF-DAPSLTYLYIDKRMQDHGLFQAVCRVNRLDGEDKDFGCIIDYSDLFDSL 661
Query: 728 VKAYLDCVSQAKTEAEKKECEKLLTPEA---KKKLEEAKKSVKAYLDCVSRARNEKEKKE 784
+A+ D + A E+++ + L++ ++ KKKLEE + +K+ + V ++E+
Sbjct: 662 QEAHSDYTNGAFENYEREDIQGLISDKSQKIKKKLEETRDQLKSLCESVKEPKDEE---- 717
Query: 785 CEKLLTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLP----------KDLQKKVLAKES 834
+ A C N + + ++++ L +L+K + +KE
Sbjct: 718 -------------DYIAYFCGDNLEKNAQKRRLFYQLVGAFLRMFVELNNLEKPIYSKEE 764
Query: 835 VKAYLDCVSQAKTEAE-KKECEKLL------TPEARKLLEEAKKSVKAYLDCVSQAKTEA 887
+ Q K EA + +K++ + + + E+ ++ + AY+
Sbjct: 765 TQ-------QIKQEAGFYRHLQKVVGLSSGDSVDLKSYNEDMRRILDAYI---------- 807
Query: 888 EKKECEKLLTPEARKLLEEXAKESVKAYLDCVSQA-KNEAEKKECEKLLTLESKKKLEEA 946
+ + E L E + L E A+ + + +SQ KNE+ E + ++K++ E
Sbjct: 808 KTTDSEVLFQIEDQGLCEVLAQMDINDFNKALSQVFKNESSMAES---IANNTRKRIIEK 864
Query: 947 KKSVKAYLDCVSQAKTEAEKKECEKLLT---------PEAKKLLEQQALDCLKNAKTEAD 997
+ S Y + +S + + EK LT AKK+++++ + K T+A
Sbjct: 865 EASDPKYYEKLSSLLNDLILQFREKKLTYLEYLQQIQDLAKKVIDKEDRNYPKKINTKAL 924
Query: 998 K 998
K
Sbjct: 925 K 925
Score = 27.3 bits (59), Expect = 3.9
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 1086 KLLEEAKESVKAYKDCVSKARNEKEKKECEKL-------LTPEAKKLLEQQVLDCLKNAK 1138
+++E K AY ++K+ NE KE K + PE +EQ++ LKN
Sbjct: 10 QVIETFKAMGYAYLGDLTKSDNENINKESLKAWLIKNQKIEPERWHKIEQEIHTALKNDL 69
Query: 1139 TEADKK 1144
EA++K
Sbjct: 70 YEANQK 75
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 34.3 bits (77), Expect = 0.032
Identities = 42/179 (23%), Positives = 71/179 (39%), Gaps = 9/179 (5%)
Query: 5 NDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDN----PTETQTHFDG 60
ND T + ++ + + N+E + + ++ ++SD DN P ET HF
Sbjct: 335 NDNAPTPLEKEEKTKEISDNKEKAKETNSSAQSVQNTQASDKTSDNKSTTPKETIRHFTQ 394
Query: 61 DKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEED 120
+E Q + + L K+ +K+ N K N +T N++D
Sbjct: 395 QLKQEIQEYKPPMSKISMDLFPKELG-KVEVTIQKVGKNLKVSVISHNNSLQTFLDNQQD 453
Query: 121 DQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHF---ENLLKESKESSDH 176
+ + DL + S K QQ +P+D E E EN LK +E++DH
Sbjct: 454 LKNSLNALGFEGVDLSFSQDSSKEQQ-APKDQPKEPFKEQELTPLKENALKSYQENTDH 511
Score = 33.1 bits (74), Expect = 0.070
Identities = 61/334 (18%), Positives = 122/334 (36%), Gaps = 37/334 (11%)
Query: 11 SKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDGDKSEETQTQM 70
+K Q + +D N T E+ E+++ + P ET + K+E+ ++
Sbjct: 90 AKDQQAPTLKDWLNHPKTHPTAPHEAQHETHEANETNPKTPNETLS-----KNEKKPNEV 144
Query: 71 DSEGNETSESSNGSL----ADKLFKKARKLVDNKKPFTQQKNLDEETQ--ELNEEDDQEN 124
S ++T+ + + A+ K N K K++ +Q +LN + Q
Sbjct: 145 ASNAHQTNLPNKNPITPNHANNAIKNPTTPTHNVKDPKTLKDIQTLSQKHDLNASNIQAA 204
Query: 125 NEYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFENLLK--ESKESSDHHLDNPT 182
+ + + D K TQ L+ +A + ++L+ E KE + NP
Sbjct: 205 TTPENKNPLNASDHLALKTTQASINHTLTKNDAKNTANLSSVLQSLEKKEPQNKEHANPP 264
Query: 183 ETQTNFDGDKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEE 242
+ K QM++ + + S + K + + + P K + +
Sbjct: 265 NNEKKTPPLKEA---LQMNAIKRDKTLSKKKPEKTPIHAKTQTIAPSATPENAPK-IPLK 320
Query: 243 TQELNE--------EDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFE 294
T L D+ +EE ++ D++ K S Q + N +A++
Sbjct: 321 TLPLMPLIGANPPPNDNAPTPLEKEEKTKEISDNKEKAKETNSSAQSVQNTQASD----- 375
Query: 295 NLLKESKESSDHHLDNPTETQTNFDGDKSEEITD 328
++SD+ P ET +F +EI +
Sbjct: 376 -------KTSDNKSTTPKETIRHFTQQLKQEIQE 402
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 34.3 bits (77), Expect = 0.032
Identities = 40/154 (25%), Positives = 73/154 (46%), Gaps = 28/154 (18%)
Query: 1113 ECEKLLTPEAKKLLEQQVLDCLKNAKTEADKKRC-VKDLPKDLQKKVLAKESVKAYLDCV 1171
E E++ + L+QQ + +T DKK +K L + Q K ++ K YL
Sbjct: 58 EAEEMRMKSQECKLQQQYENKNLQLQTHFDKKEAHLKHL--EAQHKEFVRDE-KRYL--- 111
Query: 1172 SRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLT----- 1226
EKEKKE EK +++LE+ +E+ K + +A + +A + +L
Sbjct: 112 -----EKEKKELEK-----ERQILEQERENFKKQRAICKEA----QAKALDAMLNYMAYT 157
Query: 1227 -PEARKLLEQEVKKSIKAYLDCVSRARNEKEKKE 1259
E + ++ +++++ ++A + R R EKE KE
Sbjct: 158 KDEIKSMILEQLEEELEAQKSALIR-RYEKEAKE 190
Score = 30.0 bits (66), Expect = 0.60
Identities = 35/150 (23%), Positives = 66/150 (43%), Gaps = 7/150 (4%)
Query: 1370 KLLTPEARKFL-AKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREK 1428
KL+ +A+ F+ A+E++ K + K L+ N + D E LK+L+ ++
Sbjct: 47 KLMEFQAKSFVEAEEMRMKSQECK--LQQQYENKNLQLQTHFD--KKEAHLKHLEAQHKE 102
Query: 1429 AVADCLAMAKTDEEKRKCQNLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDP 1488
V D ++EK++ + L QE +N + Q + ++ + L + D
Sbjct: 103 FVRD--EKRYLEKEKKELEKERQILEQERENFKKQRAICKEAQAKALDAMLNYMAYTKDE 160
Query: 1489 TDQEAIEQCLEGLSDSERALILGIKRQADE 1518
+EQ E L + ALI +++A E
Sbjct: 161 IKSMILEQLEEELEAQKSALIRRYEKEAKE 190
Score = 30.0 bits (66), Expect = 0.60
Identities = 37/148 (25%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Query: 971 KLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESLKAYKDCVSK-- 1028
KL+ +AK +E + + +K+ + + ++ K+L LQ KE+ + + K
Sbjct: 47 KLMEFQAKSFVEAEEMR-MKSQECKLQQQYENKNL--QLQTHFDKKEAHLKHLEAQHKEF 103
Query: 1029 ARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKL-LTPEARK- 1086
R+EK E EK + +++LE+ +++ K +A+ +A + T + K
Sbjct: 104 VRDEKRYLEKEKKELEKERQILEQERENFKKQRAICKEAQAKALDAMLNYMAYTKDEIKS 163
Query: 1087 -LLEEAKESVKAYKDCVSKARNEKEKKE 1113
+LE+ +E ++A K + + R EKE KE
Sbjct: 164 MILEQLEEELEAQKSALIR-RYEKEAKE 190
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 33.9 bits (76), Expect = 0.041
Identities = 50/217 (23%), Positives = 86/217 (39%), Gaps = 33/217 (15%)
Query: 615 LADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKD 674
L DM +K+Y +NEK + EK E + ++ + LK +K + + ++
Sbjct: 170 LKDM-IKSYNKGSRWEKNEKANADAEKYYE-EIQDRIRR-----LKESKIFDSQSSNDQE 222
Query: 675 LPKDLQSDILAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDC 734
L K S++ A ++Q TE +K + EK EA+ +E KE+
Sbjct: 223 LQKSANSNLDLDPIGNAMPQTLAQ--TETQKSQIEKSQIEEAQTQKSQEMKEA------- 273
Query: 735 VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSRARNEKEKKECEKLLTPEAK 794
A +A KK EK E+ K A ++ A +K K+ K +
Sbjct: 274 ---ASEQAIKKPLEK----------EKDKPMYLAQINSADFAPAKKSPKKPAK----ASP 316
Query: 795 KLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVLA 831
K + + N KT + K+ K+ + +LA
Sbjct: 317 KRSSKNNISVKSNTKTASKNKEVCKNCSPGQRNAILA 353
Score = 29.6 bits (65), Expect = 0.78
Identities = 45/181 (24%), Positives = 71/181 (38%), Gaps = 43/181 (23%)
Query: 832 KESVKAYLDCVSQAKTEAEKKECEKL---LTPEARKLLE------------EAKKSVKAY 876
K+ +K+Y K E + EK + R+L E E +KS +
Sbjct: 171 KDMIKSYNKGSRWEKNEKANADAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSN 230
Query: 877 LDC--------VSQAKTEAEKKECEKLLTPEARKLLEEXAKESVKAYLDCVSQAKNEAEK 928
LD + A+TE +K + EK EA+ + KE+ QA + +
Sbjct: 231 LDLDPIGNAMPQTLAQTETQKSQIEKSQIEEAQTQKSQEMKEAAS------EQAIKKPLE 284
Query: 929 KECEKLLTL------------ESKKKLEEA--KKSVKAYLDCVSQAKTEAEKKECEKLLT 974
KE +K + L +S KK +A K+S K + S KT ++ KE K +
Sbjct: 285 KEKDKPMYLAQINSADFAPAKKSPKKPAKASPKRSSKNNISVKSNTKTASKNKEVCKNCS 344
Query: 975 P 975
P
Sbjct: 345 P 345
Score = 29.3 bits (64), Expect = 1.0
Identities = 47/197 (23%), Positives = 81/197 (40%), Gaps = 10/197 (5%)
Query: 80 SSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQEETQTDLIDDE 139
+S +L + L+ K R DN K + N ++ NE+ + + +Y EE Q + +
Sbjct: 151 ASEVALKELLYWKTR-YHDNLKDMIKSYNKGSRWEK-NEKANADAEKYYEEIQDRIRRLK 208
Query: 140 TSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQ-TNFDGDKSEETQT 198
SK S SN++ + + NL + ++ TETQ + + + EE QT
Sbjct: 209 ESKIFDSQS----SNDQELQKSANSNLDLDPIGNAMPQTLAQTETQKSQIEKSQIEEAQT 264
Query: 199 QMDSEGNE-TSESSNGSLADKLFKKARKLVD-NKKPFTQQKNLDEETQELNEEDDQENN- 255
Q E E SE + +K K L N F K ++ + + + +NN
Sbjct: 265 QKSQEMKEAASEQAIKKPLEKEKDKPMYLAQINSADFAPAKKSPKKPAKASPKRSSKNNI 324
Query: 256 EYQEETQTDLIDDETSK 272
+ T+T + E K
Sbjct: 325 SVKSNTKTASKNKEVCK 341
Score = 26.2 bits (56), Expect = 8.6
Identities = 32/142 (22%), Positives = 60/142 (41%), Gaps = 15/142 (10%)
Query: 210 SSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQEETQTDLIDDE 269
+S +L + L+ K R DN K + N ++ NE+ + + +Y EE Q + +
Sbjct: 151 ASEVALKELLYWKTR-YHDNLKDMIKSYNKGSRWEK-NEKANADAEKYYEEIQDRIRRLK 208
Query: 270 TSKKTQQHSPQDLSNEEATEAN---------HFENLLKESKESSDHHLDNPTETQTNFDG 320
SK S D +++ +N + L + + S E QT
Sbjct: 209 ESKIFDSQSSNDQELQKSANSNLDLDPIGNAMPQTLAQTETQKSQIEKSQIEEAQT---- 264
Query: 321 DKSEEITDDSNDQEIIKGSKKK 342
KS+E+ + +++Q I K +K+
Sbjct: 265 QKSQEMKEAASEQAIKKPLEKE 286
>ref|NP_224063.1| putative thiophene/furan oxidation protein [Helicobacter pylori
J99]
Length = 461
Score = 33.5 bits (75), Expect = 0.054
Identities = 56/232 (24%), Positives = 97/232 (41%), Gaps = 45/232 (19%)
Query: 491 LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLI---------NDPEIREKF 541
L L +DE++ +L Q K ++ + +E RN LKL+ ++ +I F
Sbjct: 140 LILCEDESVLNALARQLKGELKIFI------EEARNNLLKLLASSEVLIDYSEEDIPSDF 193
Query: 542 RKELE--LQKELQEYKDCI--KNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDE 597
KE+ L+K++ +KD + NA+ + K L + K L NA E
Sbjct: 194 LKEVSFNLEKQIASFKDLLDFSNAQKQRNKGHALSIVGK------PNAGKSSLLNAMLLE 247
Query: 598 ERN--ECLKNIPQDLQKELLADMSVKAYK-DCVSKARNEKEKQECEKLLTPEARKKLEQ- 653
ER +K +D +E++ +K +K + A + E E+L ++ K LE
Sbjct: 248 ERALVSDIKGTTRDTIEEVI---ELKGHKVRLIDTAGIRESADEIERLGIEKSLKSLENC 304
Query: 654 ----QVLDCLKNAKTDE---------ERKKCLKDLPKDLQSDILAKESLKAY 692
V D K + ++ +K C+ L K+ + L E LK+Y
Sbjct: 305 DIILGVFDLSKPLEKEDFNLMDTLNRTKKPCIVVLNKNDLAPKLELEILKSY 356
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 33.5 bits (75), Expect = 0.054
Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 19/148 (12%)
Query: 523 EERNECLKLINDPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNKCLKGLSKEAIERL 582
E+R + K +ND E + K LE +++L KN +T + N + + K+ E
Sbjct: 27 EKRKDLDKALNDKEAKNKAILNLE-EEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK 85
Query: 583 KQQALDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKL 642
++ L L NI +D+ KE ++ + + ++ ++ +++ EKQE K
Sbjct: 86 SERELRSL--------------NIEEDIAKE-RSNQANREIENLQNEIKHKSEKQEVLKK 130
Query: 643 LTPEARK---KLEQQVLDCLKNAKTDEE 667
E K +LE V + +KN K ++
Sbjct: 131 EMLELEKLALELENLVENEVKNIKETQQ 158
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 33.5 bits (75), Expect = 0.054
Identities = 64/284 (22%), Positives = 112/284 (38%), Gaps = 27/284 (9%)
Query: 962 TEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKD-LPKDLQKKVLAKESLK 1020
+E E + E L E + D + + DK KD L K+ + ESL
Sbjct: 23 SELEDENTELLREREYLAAETSELKDANDQLRQKNDKLFITKDKLTKENTELFAENESLS 82
Query: 1021 AYKDCVSKAR------NEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTE--AE 1072
+ + N K KE +L T K +L + + A D +++ K E E
Sbjct: 83 VKISGLEHSNDQLWQNNNKLTKEKAELKTE--KDILAKENTRLLAARDRLTEEKRELTTE 140
Query: 1073 KKECEKLLTPEARKLLEEAKESVKAYKDC------VSKARNEKEKKECEKLLTPEAKKLL 1126
K+ ++ T K+ E KE+ + V+ NE++ E E+ +A L
Sbjct: 141 KERLKRENTELTHKITELTKENKALTTENDKLNHQVTALTNERDSLEQERARLQDAHGFL 200
Query: 1127 EQQVLDCLKNAKTEADKKRCVKDLPKDLQ------KKVLAKESVKAYLDCVSRARNEKEK 1180
E++ + K + DK + ++ K L+ ++ L +V+ ++ + EK
Sbjct: 201 EKRCTNLEKENQRLTDKLKQLESAQKSLENTNNQLRQALENSNVQL---AQAKEKIAIEK 257
Query: 1181 KECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKL 1224
E E+ + EAK L + L+ A NE+ +R KL
Sbjct: 258 SELEREIARLKSLEGMEAKSDLDLHNRRLASA-NEDLKRQNRKL 300
>ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 576
Score = 33.1 bits (74), Expect = 0.070
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 17/100 (17%)
Query: 919 VSQAKNEAEKKECEKLLTLESKKKLEEAKKSVKAYLDCVSQAKTEAEKKECE----KLLT 974
VS K+EA+KK L E ++L +K V A LD A+ A+ ++ E +L
Sbjct: 484 VSNLKDEAQKK-----LAFEVYERL--LQKGVDALLDD-RDARFGAKMRDFELIGERLAL 535
Query: 975 PEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVL 1014
K+ LE + +C+K A E K+ +KD+ +L++K+L
Sbjct: 536 IVGKQTLESKEFECIKRANLE---KQTIKDI--ELEEKIL 570
Score = 32.7 bits (73), Expect = 0.092
Identities = 27/96 (28%), Positives = 49/96 (50%), Gaps = 9/96 (9%)
Query: 1064 VSQAKTEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSKARNEKEKKECEKLLTPEAK 1123
VS K EA+KK L +LL++ +++ +D A+ + E+L K
Sbjct: 484 VSNLKDEAQKK----LAFEVYERLLQKGVDALLDDRDARFGAKMRDFELIGERLALIVGK 539
Query: 1124 KLLEQQVLDCLKNAKTEADKKRCVKDLPKDLQKKVL 1159
+ LE + +C+K A E K+ +KD+ +L++K+L
Sbjct: 540 QTLESKEFECIKRANLE---KQTIKDI--ELEEKIL 570
Score = 28.5 bits (62), Expect = 1.7
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 735 VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSRARNEKEKKE---CEKLLTP 791
VS K EA+KK L E ++L +K V A LD K + E+L
Sbjct: 484 VSNLKDEAQKK-----LAFEVYERL--LQKGVDALLDDRDARFGAKMRDFELIGERLALI 536
Query: 792 EAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVL 830
K+ LE + +C+K A +K+ +KD+ +L++K+L
Sbjct: 537 VGKQTLESKEFECIKRANLEKQ---TIKDI--ELEEKIL 570
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 33.1 bits (74), Expect = 0.070
Identities = 23/106 (21%), Positives = 48/106 (44%), Gaps = 2/106 (1%)
Query: 237 KNLDEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFENL 296
K ++E+ ++ + Q+ + + E+ TD + +S KTQ S DL + T AN +
Sbjct: 181 KKMEEQAEKDTKAAFQKRSSGELESHTDSPEFISSSKTQNSSNPDL--DPMTNANTLKET 238
Query: 297 LKESKESSDHHLDNPTETQTNFDGDKSEEITDDSNDQEIIKGSKKK 342
+ E+S P + + +K ++ +++I SK +
Sbjct: 239 ASKEPETSSKKEKKPKKKRRLSKKEKQQQALQQEFEKQISDSSKSE 284
Score = 31.6 bits (70), Expect = 0.21
Identities = 23/105 (21%), Positives = 51/105 (47%), Gaps = 3/105 (2%)
Query: 107 KNLDEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFENL 166
K ++E+ ++ + Q+ + + E+ TD + +S KTQ S DL + T AN +
Sbjct: 181 KKMEEQAEKDTKAAFQKRSSGELESHTDSPEFISSSKTQNSSNPDL--DPMTNANTLKET 238
Query: 167 LKESKESSDHHLDNPTETQTNFDGDKSEET-QTQMDSEGNETSES 210
+ E+S P + + +K ++ Q + + + +++S+S
Sbjct: 239 ASKEPETSSKKEKKPKKKRRLSKKEKQQQALQQEFEKQISDSSKS 283
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 32.7 bits (73), Expect = 0.092
Identities = 85/404 (21%), Positives = 157/404 (38%), Gaps = 48/404 (11%)
Query: 939 SKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADK 998
SKK E K+ A C+++ A+ + + + ++LE +K AK A K
Sbjct: 53 SKKPPESVLKNTLALDFCLNKFTKNAKILQANVI---DNDRILE------IKGAKDLAYK 103
Query: 999 KRC----VKDLPKDLQKKVLAKESLKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEAK 1054
++ +PK +L +E CV +A ++ +L + E +
Sbjct: 104 SETFILRLEMIPKKANLMILDQEK------CVIEAFRFNDRVAKNDILGALPPNIYEHQE 157
Query: 1055 KSV--KAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSKARNEKEKK 1112
+ + K LD + + + KE E + K L KE +K + EK
Sbjct: 158 EDLDFKGLLDILEKDFLSYQHKELEHKKN-QIIKRLNAQKERLK----------EKLEKL 206
Query: 1113 ECEKLLTPEAKKLLEQ-QVLDCLKNAKTEADKKRCVKDLP-KDLQKKVLAKESVKAYLDC 1170
E K L EAK+L Q +L ++ + + +KD K+ ++ + A+++
Sbjct: 207 EDPKTLQLEAKELQTQASLLLTYQHLINRRENRVILKDFEDKECMIEIDKSMPLNAFIN- 265
Query: 1171 VSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEAR 1230
+ K+KK+ + L E + L KE + ++ ++ R+ E E + +
Sbjct: 266 -KKFTLSKKKKQKSQFLYLEEENL----KEKIAFKENQINYVRDAAEESVLEMFMPVKNS 320
Query: 1231 KLLEQEVKKSIKAYLDC-VSRARNEKEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEER 1289
K+ + Y D + +N+KE + L +AR A + +
Sbjct: 321 KIKRPMNGYEVLYYKDFKIGLGKNQKENIK----LLQDAR---ANDLWMHVRDIPGSHLI 373
Query: 1290 KACLKNLPKDLQENILAKESLKAYKDCLSQARNEEERRACEKLL 1333
C KN PKD LAK +K KD + + +R K++
Sbjct: 374 VFCQKNTPKDEVIMELAKMLIKMQKDAFNGYEIDYTQRKFVKII 417
Score = 32.3 bits (72), Expect = 0.12
Identities = 61/275 (22%), Positives = 108/275 (39%), Gaps = 14/275 (5%)
Query: 442 YECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDENLKK 501
YE +++ L +++ L Q K+ N IK ++ER+K L K E+ K
Sbjct: 153 YEHQEEDLDFKGLLDILEKDFLSYQHKELEHKKNQIIKRLNAQKERLK-EKLEKLEDPKT 211
Query: 502 SLLNQQKVQVALDCL---KNAKTDEERNECLKLINDPEIREKFRKELELQKELQEYKDCI 558
L +++Q L ++ E LK D E + K + L + +
Sbjct: 212 LQLEAKELQTQASLLLTYQHLINRRENRVILKDFEDKECMIEIDKSMPLNAFINKKFTLS 271
Query: 559 KNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM 618
K K +++ + KE I K+ ++ +++A +E E + K +
Sbjct: 272 KKKKQKSQFLYLEEENLKEKIA-FKENQINYVRDA-AEESVLEMFMPVKNSKIKRPMNGY 329
Query: 619 SVKAYKDC-VSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPK 677
V YKD + +N+KE KLL L V D + C K+ PK
Sbjct: 330 EVLYYKDFKIGLGKNQKENI---KLLQDARANDLWMHVRDIPGSHLI----VFCQKNTPK 382
Query: 678 DLQSDILAKESLKAYKDCVSQAKTEAEKKECEKLL 712
D LAK +K KD + + + +++ K++
Sbjct: 383 DEVIMELAKMLIKMQKDAFNGYEIDYTQRKFVKII 417
Score = 27.7 bits (60), Expect = 3.0
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 1359 ARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEK 1418
A+ E+ K++ EKL P+ + AKELQ + + + + I+K D+E
Sbjct: 194 AQKERLKEKLEKLEDPKTLQLEAKELQTQASLLLTYQHLINRRENRVILK---DFEDKEC 250
Query: 1419 LKYLQEAREKAVADCLAMAKTDEEKRKCQNLYSDLIQEIQNKRTQNKQNQLS 1470
+ + ++ + ++K+K Q LY L +E ++ K+NQ++
Sbjct: 251 MIEIDKSMPLNAFINKKFTLSKKKKQKSQFLY--LEEENLKEKIAFKENQIN 300
Score = 26.6 bits (57), Expect = 6.6
Identities = 59/295 (20%), Positives = 116/295 (39%), Gaps = 53/295 (17%)
Query: 599 RNECLKNIPQDLQKELLADMSVKAYKDCVSK----------------------ARNEKEK 636
+N+ L +P ++ + D+ K D + K A+ E+ K
Sbjct: 141 KNDILGALPPNIYEHQEEDLDFKGLLDILEKDFLSYQHKELEHKKNQIIKRLNAQKERLK 200
Query: 637 QECEKLLTPEA----RKKLEQQ--VLDCLKNAKTDEERKKCLKDLP-KDLQSDILAKESL 689
++ EKL P+ K+L+ Q +L ++ E + LKD K+ +I L
Sbjct: 201 EKLEKLEDPKTLQLEAKELQTQASLLLTYQHLINRRENRVILKDFEDKECMIEIDKSMPL 260
Query: 690 KAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEK 749
A+ +++ T ++KK+ + + L EE KE + + ++ + AE+ E
Sbjct: 261 NAF---INKKFTLSKKKKQKS----QFLYLEEENLKEKIAFKENQINYVRDAAEESVLEM 313
Query: 750 LLTPEAKKKLEEAKKSVKA--YLDC-VSRARNEKEKKECEKLLTPEAKKLLEQQALDCLK 806
+ P K++ + Y D + +N+KE K L + +A D
Sbjct: 314 FM-PVKNSKIKRPMNGYEVLYYKDFKIGLGKNQKEN----------IKLLQDARANDLWM 362
Query: 807 NAKTDKERKK---CLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL 858
+ + C K+ PKD LAK +K D + + + +++ K++
Sbjct: 363 HVRDIPGSHLIVFCQKNTPKDEVIMELAKMLIKMQKDAFNGYEIDYTQRKFVKII 417
>ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 920
Score = 32.7 bits (73), Expect = 0.092
Identities = 60/240 (25%), Positives = 96/240 (40%), Gaps = 32/240 (13%)
Query: 551 LQEYKDCIK-NAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQD 609
++EYKD + N T + K K + +QQA ++N K D + L + P
Sbjct: 1 MKEYKDTLNLNETTFSMKGNLSVNEPKTYAKWQEQQAFKRMQNRK-DNHGDFTLHDGPPY 59
Query: 610 LQKEL-LADMSVKAYKDCVSKARNEKEKQ-------ECEKLLTPEARKKLEQQVLDCLKN 661
L L K KD V K K K+ +C L +EQQ+L+ L+
Sbjct: 60 ANGHLHLGHALNKILKDIVIKREYFKGKKIYYTPGWDCHGL-------PIEQQILEQLEK 112
Query: 662 AKTDEE-----RKKCLKDLPKDLQ---SDILAKESLKAYKDCVSQAKTEAEKKECEKLLT 713
KT E R+KC K L+ ++ L L ++D + E L+
Sbjct: 113 EKTSLENPTLFREKCRDHAKKFLEIQKNEFLQLGVLGDFEDPYKTMDFKFEASIYRALVG 172
Query: 714 PEAKKLLEEEAKESVKAYL--DCVSQAKTEAEKKECEKL-----LTPEAKKKLEEAKKSV 766
K LL+E K +Y +++A+ E + K+ + L E +KL+ K S+
Sbjct: 173 VAKKGLLKERHKPIYWSYACESALAEAEVEYKMKKSPSIFVAFDLKKEGLEKLKVKKASL 232
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 32.7 bits (73), Expect = 0.092
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Query: 453 ECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLD---LIKDENLKKSLLN--QQ 507
+ K ++ KK++++++ ++A D +K E+R++ L L ENL KS N QQ
Sbjct: 211 QAYKAMRLKKIKNKLQSQIQAKEDALKTFLPLEKRLETLKSRFLCDKENL-KSCANQLQQ 269
Query: 508 KVQVAL----DCLKNAKTDEERN 526
+ Q AL LKNAK ++E++
Sbjct: 270 RYQNALIERDKELKNAKNNKEKH 292
Score = 30.0 bits (66), Expect = 0.60
Identities = 66/287 (22%), Positives = 115/287 (39%), Gaps = 38/287 (13%)
Query: 991 NAKTEADKKRCVKDLPKDLQKKVLAKESLKAYKDCVSKARNE-KEKKECEKLLTPEAK-- 1047
+++T A R + L L K ESL+ Y++ +S +++ KE K+ LT + +
Sbjct: 23 DSQTNAKLSRSNEQLSDMLYK---LNESLRIYQNVLSNNQDQLKEIKKANSTLTSQRRFF 79
Query: 1048 -----KLLEE---AKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESVKAYK 1099
+L++ K+S + K E E E+L+ L+E + K
Sbjct: 80 NASQIRLMDTDALLKQSALELEKLQALEKHLKESMEHERLIKESQALFLQEHCPYLSGVK 139
Query: 1100 DC--VSKARNEKEKKECEKLLT-PEAKKLLEQQVLDCLKNAKTEADKKRCVKDLP---KD 1153
+ S A +EK LL P+ LL + L NA + + ++D K
Sbjct: 140 NLEEASNALEVQEKNNALFLLKEPKLFHLLSRLDLMSALNALCDQVLENEIQDQQSHNKT 199
Query: 1154 LQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKL---LEEAKESLKAYKDCLS 1210
L+ L +AY R + K K + + +A K LE+ E+LK+ C
Sbjct: 200 LEYNALMNHDFQAYK--AMRLKKIKNKLQSQIQAKEDALKTFLPLEKRLETLKSRFLC-- 255
Query: 1211 QARNEEERRACEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNEKEK 1257
++E ++C L + L + K+ + A+N KEK
Sbjct: 256 ---DKENLKSCANQLQQRYQNALIERDKE--------LKNAKNNKEK 291
>ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobacter pylori J99]
Length = 352
Score = 32.3 bits (72), Expect = 0.12
Identities = 26/95 (27%), Positives = 41/95 (42%), Gaps = 2/95 (2%)
Query: 1310 LKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECE 1369
LK Y + + + E +KL + +E+ + K YL + + KE E +
Sbjct: 12 LKRYDELTALLSSVEVVSDIKKLTELSKEQSSIEEISVASKEYLSVLEGIKENKELLEDK 71
Query: 1370 KL--LTPEARKFLAKELQQKDKAIKDCLKNADPND 1402
+L L E K L + + + AIK L DPND
Sbjct: 72 ELSELAKEELKILEIQKSELETAIKQLLIPKDPND 106
Score = 27.3 bits (59), Expect = 3.9
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Query: 1194 LLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSIKAYLDCVSRARN 1253
L E+ LK Y + + + E +KL + +E+ + K YL + +
Sbjct: 4 LAEKLSSILKRYDELTALLSSVEVVSDIKKLTELSKEQSSIEEISVASKEYLSVLEGIKE 63
Query: 1254 EKEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKD 1299
KE LL + LAK+ L LE +E E +PKD
Sbjct: 64 NKE------LLEDKELSELAKEELKILEIQKSELETAIKQLLIPKD 103
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 32.0 bits (71), Expect = 0.16
Identities = 20/91 (21%), Positives = 44/91 (47%), Gaps = 1/91 (1%)
Query: 663 KTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEE 722
K++ ER+ ++ + A E KD V T +K+E ++ + E K+ +++
Sbjct: 50 KSETERQNSTFSPKEEANATTTATEQ-NPTKDTVPPLDTATQKQEIKQEIKQEIKQEIKQ 108
Query: 723 EAKESVKAYLDCVSQAKTEAEKKECEKLLTP 753
E K+ +K + ++ + E E K + ++P
Sbjct: 109 EIKQEIKQEIKQETKQEQEKENKPKQNSVSP 139
Score = 29.3 bits (64), Expect = 1.0
Identities = 22/93 (23%), Positives = 45/93 (47%), Gaps = 7/93 (7%)
Query: 1179 EKKECEKLLTPEAKKLLEEAKESLKAY-----KDCLSQARNEEERRACEKLLTPEARKLL 1233
EK E E+ + + K EEA + A KD + +++ ++ + E ++ +
Sbjct: 49 EKSETERQNSTFSPK--EEANATTTATEQNPTKDTVPPLDTATQKQEIKQEIKQEIKQEI 106
Query: 1234 EQEVKKSIKAYLDCVSRARNEKEKKECEKLLTP 1266
+QE+K+ IK + ++ EKE K + ++P
Sbjct: 107 KQEIKQEIKQEIKQETKQEQEKENKPKQNSVSP 139
Score = 27.7 bits (60), Expect = 3.0
Identities = 12/61 (19%), Positives = 32/61 (51%)
Query: 1314 KDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLT 1373
KD + +++ ++ + E ++ ++QE+K+ +K + ++ EKE K + ++
Sbjct: 79 KDTVPPLDTATQKQEIKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVS 138
Query: 1374 P 1374
P
Sbjct: 139 P 139
>ref|NP_223159.1| putative [Helicobacter pylori J99]
Length = 181
Score = 31.6 bits (70), Expect = 0.21
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 1323 EEERRACEKLLTPEARKLLEQEVKKSVKAY 1352
+ E + E L E R LLEQE +KSVKAY
Sbjct: 125 KSEIKKLENQLIEETRMLLEQETQKSVKAY 154
Score = 31.6 bits (70), Expect = 0.21
Identities = 22/69 (31%), Positives = 32/69 (45%), Gaps = 6/69 (8%)
Query: 1182 ECEKLLTPEAKKLLEEAKESLKAYKDCLSQARN------EEERRACEKLLTPEARKLLEQ 1235
E K E ++ E S+ A + ++ N + E + E L E R LLEQ
Sbjct: 86 ESLKTKMKEYERFFSEFNTSMHANEQEVTATLNANTENIKSEIKKLENQLIEETRMLLEQ 145
Query: 1236 EVKKSIKAY 1244
E +KS+KAY
Sbjct: 146 ETQKSVKAY 154
Score = 30.8 bits (68), Expect = 0.35
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 699 AKTEAEKKECEKL---LTPEAKKLLEEEAKESVKAY 731
A TE K E +KL L E + LLE+E ++SVKAY
Sbjct: 119 ANTENIKSEIKKLENQLIEETRMLLEQETQKSVKAY 154
Score = 30.0 bits (66), Expect = 0.60
Identities = 21/68 (30%), Positives = 37/68 (53%), Gaps = 2/68 (2%)
Query: 848 EAEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEX 907
+ + KE E+ + E + ++ V A L+ ++ ++E K+ E L E R LLE+
Sbjct: 89 KTKMKEYERFFS-EFNTSMHANEQEVTATLNANTE-NIKSEIKKLENQLIEETRMLLEQE 146
Query: 908 AKESVKAY 915
++SVKAY
Sbjct: 147 TQKSVKAY 154
Score = 28.1 bits (61), Expect = 2.3
Identities = 20/36 (55%), Positives = 22/36 (60%), Gaps = 4/36 (11%)
Query: 845 AKTEAEKKECEKL---LTPEARKLLE-EAKKSVKAY 876
A TE K E +KL L E R LLE E +KSVKAY
Sbjct: 119 ANTENIKSEIKKLENQLIEETRMLLEQETQKSVKAY 154
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 31.6 bits (70), Expect = 0.21
Identities = 24/111 (21%), Positives = 49/111 (43%), Gaps = 1/111 (0%)
Query: 823 KDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQ 882
K + K L +++ K V + +TE K+ E + E +K + KK++ L +SQ
Sbjct: 25 KSMDNKQLLEQAGKVAPSEVPEFRTEVNKR-LEAMKEEERQKYKADFKKAMDKNLASLSQ 83
Query: 883 AKTEAEKKECEKLLTPEARKLLEEXAKESVKAYLDCVSQAKNEAEKKECEK 933
KKE +++ + + + + +E DC + +K+ +K
Sbjct: 84 EDRNKRKKEILEVIANKKKTMTMKEYREEGLDLHDCACEGPFHDHEKKGQK 134
Score = 30.8 bits (68), Expect = 0.35
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 1007 KDLQKKVLAKESLKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQ 1066
K + K L +++ K V + R E K+ E + E +K + KK++ L +SQ
Sbjct: 25 KSMDNKQLLEQAGKVAPSEVPEFRTEVNKR-LEAMKEEERQKYKADFKKAMDKNLASLSQ 83
Query: 1067 AKTEAEKKECEKLLTPEARKL-LEEAKESVKAYKDCVSKARNEKEKKECEKLLTPEAKK 1124
KKE +++ + + + ++E +E DC + +K+ +K P K
Sbjct: 84 EDRNKRKKEILEVIANKKKTMTMKEYREEGLDLHDCACEGPFHDHEKKGQKGKKPSHHK 142
Score = 30.4 bits (67), Expect = 0.46
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 1400 PNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQNLYSDLIQEIQN 1459
P R + K L+ + +EE+ KY + ++ + ++++ D KRK ++++ I N
Sbjct: 45 PEFRTEVNKRLEAMKEEERQKYKADFKKAMDKNLASLSQEDRNKRK-----KEILEVIAN 99
Query: 1460 KR 1461
K+
Sbjct: 100 KK 101
Score = 30.4 bits (67), Expect = 0.46
Identities = 20/97 (20%), Positives = 45/97 (45%), Gaps = 2/97 (2%)
Query: 1298 KDLQENILAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVS 1357
K + L +++ K + + R E +R + + E R+ + + KK++ L +S
Sbjct: 25 KSMDNKQLLEQAGKVAPSEVPEFRTEVNKRL--EAMKEEERQKYKADFKKAMDKNLASLS 82
Query: 1358 RARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDC 1394
+ K KKE +++ + + KE +++ + DC
Sbjct: 83 QEDRNKRKKEILEVIANKKKTMTMKEYREEGLDLHDC 119
Score = 28.1 bits (61), Expect = 2.3
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 15/113 (13%)
Query: 645 PEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKTEAE 704
PE R ++ +++ A +EER+K D K + ++ + +SQ
Sbjct: 45 PEFRTEVNKRL-----EAMKEEERQKYKADFKKAMDKNLAS----------LSQEDRNKR 89
Query: 705 KKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKK 757
KKE +++ + K + +E +E DC + +K+ +K P K
Sbjct: 90 KKEILEVIANKKKTMTMKEYREEGLDLHDCACEGPFHDHEKKGQKGKKPSHHK 142
Score = 26.9 bits (58), Expect = 5.1
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 717 KKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSRA 776
K+LLE+ K + V + +TE K+ E + E +K + KK++ L +S+
Sbjct: 30 KQLLEQAGKVAPSE----VPEFRTEVNKR-LEAMKEEERQKYKADFKKAMDKNLASLSQE 84
Query: 777 RNEKEKKECEKLLTPEAKKL 796
K KKE +++ + K +
Sbjct: 85 DRNKRKKEILEVIANKKKTM 104
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 31.2 bits (69), Expect = 0.27
Identities = 79/367 (21%), Positives = 140/367 (37%), Gaps = 45/367 (12%)
Query: 1047 KKLLEE-AKKSVKAYLDCVSQAK-TEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSK 1104
K ++EE AK K+ D +S+ ++ KK E L+ + L ++++ A D +
Sbjct: 881 KNIIEERAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICD 940
Query: 1105 ARNEKEKKECEKLLTPEAKKLLEQQVLDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESV 1164
A K+K A ++++ + L A K++ V D+ L +
Sbjct: 941 AGRAKDK----------ANEMMQGG--NSLFGAMEGGIKEQVVLDMVD------LGEHDA 982
Query: 1165 KAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKL 1224
K L+C E E L + L+E KE +K +K+ + EE +
Sbjct: 983 KTLLEC-----------EYETLGIHVSGNPLDEFKEEIKGFKNLVKSIDIEELEIGSQAY 1031
Query: 1225 LTPEARKLLEQEVKKSIKAY-----LDCVSRARNEKEKKECEKLLTPEARKFLAKQVLNC 1279
L + ++ ++ K+S K Y LD + +K+ L + K L V C
Sbjct: 1032 LLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLFEKQLNALEELDINKPL---VFKC 1088
Query: 1280 LEKAGNEEERKACLKNLPKDLQENILAKESLKAYKDCLSQARNEEERRACEKLLTPEARK 1339
+ E R + L DL+ K YKD Q + E E L +
Sbjct: 1089 KIEEQEEVARLRLFEIL--DLESAREVKIPKARYKDPEKQKEDVREIPPMEMLASSSCSL 1146
Query: 1340 --LLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKN 1397
+LE +VKK + A + K+ ++ + ++F + ++ IKD K
Sbjct: 1147 AIVLENDVKKEFLRQIK--ESALKHQGKRPLYLIIKDKDKQFKIQSDLMVNEKIKDDFKG 1204
Query: 1398 ADPNDRA 1404
+ D A
Sbjct: 1205 LEWRDLA 1211
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 31.2 bits (69), Expect = 0.27
Identities = 34/170 (20%), Positives = 73/170 (42%), Gaps = 26/170 (15%)
Query: 108 NLDEETQELNEEDDQENNEYQEETQ-TDLIDDETSKKTQQHSPQDLSNEEATEANHFENL 166
N + T ++N +D+ + ++ T + D+ ++ QQ +D++N + N
Sbjct: 409 NTYDVTFDINGQDETLQETFSNQSIITQFLGDDLQQQAQQTYQEDVANSQ--------NA 460
Query: 167 LKESKESSDHHLDNPTETQTNFDGDKSEETQTQMDSEGNETSESSNGSLADKLFKKARKL 226
L +K +SD+ + N + T +S D++G E + ++ K
Sbjct: 461 L--NKVASDNTIANNDTSYT-----QSSNPTILKDAQGLENTNQQ--------IQQDEKA 505
Query: 227 VDNKKPFTQQKNLDEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQ 276
++ K Q K L T NE+ + + +++ + L +DE + T+Q
Sbjct: 506 LE--KDLAQIKQLANSTTGFNEQAFTQAQKQEQQDEQALQNDENAFNTEQ 553
>ref|NP_223388.1| putative [Helicobacter pylori J99]
Length = 192
Score = 31.2 bits (69), Expect = 0.27
Identities = 15/54 (27%), Positives = 32/54 (58%)
Query: 545 LELQKELQEYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEE 598
L+++K +++ + KNA EK K + E ++L++++L L++ K +EE
Sbjct: 10 LDVEKSIKDLQSIFKNADGRDEKLKRFNQEALEVFQKLERESLKELESLKNNEE 63
>ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99]
Length = 402
Score = 31.2 bits (69), Expect = 0.27
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 16/160 (10%)
Query: 1238 KKSIKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQVLNCLEKAGNEE-ERKACLKNL 1296
K+++ A D + E+ + E KLL + +AK+ LE E+ E LKN
Sbjct: 181 KRAVFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVTQEKIENLGFLKNA 240
Query: 1297 PKDLQENILAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCV 1356
P +L+ +L + +++ E L P+ +L + K+ KA+L+
Sbjct: 241 PLNLELRLLG---------------FFKHQKSLENLRYPKKTCVLFAQAKECHKAFLNIH 285
Query: 1357 SRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLK 1396
S+ + K+ + A F A E ++ IK LK
Sbjct: 286 SKTELKFLLKDHDLEPFNLALDFYALENPKRALKIKGLLK 325
Score = 26.9 bits (58), Expect = 5.1
Identities = 47/206 (22%), Positives = 79/206 (37%), Gaps = 37/206 (17%)
Query: 792 EAKKLLEQQALDCLKNAKTD--KERKKCLKDL--PKDLQKKVLA--KESVKAYLDCVSQA 845
+ + +E Q ++C+ A+ ++ + L+ L L K+ A K +V A D +
Sbjct: 135 KGQNAIENQTIECVGEARLRFFEDALRILRALRFSATLGFKIAASTKRAVFACKDLLKHL 194
Query: 846 KTEAEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKTE------------------- 886
E + E KLL K E K + L+ V+Q K E
Sbjct: 195 SKERLQSELNKLLMG---KNAYEVAKEYQEILELVTQEKIENLGFLKNAPLNLELRLLGF 251
Query: 887 -AEKKECEKLLTPEARKLLEEXAKESVKAYLDCVSQAKNEAEKKECE--------KLLTL 937
+K E L P+ +L AKE KA+L+ S+ + + K+ + L
Sbjct: 252 FKHQKSLENLRYPKKTCVLFAQAKECHKAFLNIHSKTELKFLLKDHDLEPFNLALDFYAL 311
Query: 938 ESKKKLEEAKKSVKAYLDCVSQAKTE 963
E+ K+ + K +K D K E
Sbjct: 312 ENPKRALKIKGLLKEIFDSNEPFKKE 337
Score = 26.2 bits (56), Expect = 8.6
Identities = 29/122 (23%), Positives = 55/122 (44%), Gaps = 16/122 (13%)
Query: 619 SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDE-ERKKCLKDLPK 677
+V A KD + E+ + E KLL + ++ ++ + L+ ++ E LK+ P
Sbjct: 183 AVFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVTQEKIENLGFLKNAPL 242
Query: 678 DLQSDILAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQ 737
+L+ +L +K +K E L P+ +L +AKE KA+L+ S+
Sbjct: 243 NLELRLLG-----FFK----------HQKSLENLRYPKKTCVLFAQAKECHKAFLNIHSK 287
Query: 738 AK 739
+
Sbjct: 288 TE 289
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 31.2 bits (69), Expect = 0.27
Identities = 37/156 (23%), Positives = 68/156 (42%), Gaps = 11/156 (7%)
Query: 449 GNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQK 508
G+ E + I +K L TL YN N +E+R D+ ++ K+S L K
Sbjct: 462 GDLGENFEAIHEKYLHTIGNLTLTGYNAKYSNKSFQEKR----DM--EKGFKQSSLKLNK 515
Query: 509 VQVALDCLKNAKTDEERNE----CLKLINDPEIREKFRKELELQKELQEYKDCIKNAKTE 564
L+ + ++ ++ LK+ P + + +E + +KE +E K+ + + +
Sbjct: 516 NLKDLEPFGEKEIEKRASDLVDWALKIWTYPILEAETLEEYKPKKEKKEKKEKKEKEEYK 575
Query: 565 AEKNKCLKGLSKEAIERLKQQALDCL-KNAKTDEER 599
+K K + LS ++ D L K KT +ER
Sbjct: 576 LKKEKKVYDLSSYKFSPHSRELFDILRKEIKTLDER 611
Score = 26.2 bits (56), Expect = 8.6
Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 36/192 (18%)
Query: 710 KLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAY 769
K L P +K +E+ A + V L + EAE E K P+ +KK ++ KK + Y
Sbjct: 518 KDLEPFGEKEIEKRASDLVDWALKIWTYPILEAETLEEYK---PKKEKKEKKEKKEKEEY 574
Query: 770 LDCVSRARNEKEKKECE---KLLTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQ 826
+ +KEKK + +P +++L D L+ KE K + + ++
Sbjct: 575 -------KLKKEKKVYDLSSYKFSPHSREL-----FDILR-----KEIKTLDERVTENFN 617
Query: 827 KKVLAKESVKA-YLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKKSVKAY------LDC 879
K +A + K ++D V Q K + L E +L +E K+ +K C
Sbjct: 618 SKYIAYKFFKINFVDIVVQ------NKVLKLYLKMEFNELQDEIKEKLKIRDVSNIGCPC 671
Query: 880 VSQAKTEAEKKE 891
+ E E KE
Sbjct: 672 SEDMEVELETKE 683
>ref|NP_223639.1| putative [Helicobacter pylori J99]
Length = 328
Score = 30.8 bits (68), Expect = 0.35
Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 24/207 (11%)
Query: 1290 KACLK--NLPKDLQENILAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKK 1347
K C+ LPK L+E + K K ++A NEEE E+ + +A++ + + +K
Sbjct: 3 KVCVSAWGLPKILEERLKEKYGDDWEKHVKAKAINEEE---LEEQVKAKAKEQQKTQREK 59
Query: 1348 SVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKN------ADPN 1401
++ +L V + + + +L E ++ A L Q ++ I D + + A
Sbjct: 60 TLNGFLKKVGLKKRDMLQ---STMLFDEVKE--ADVLFQAERKIGDWIFSSAVFFFALAL 114
Query: 1402 DRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQNLYSDLIQEIQNKR 1461
A I+ CL L +EK+ YL A + + + D+ R Q L L+ N R
Sbjct: 115 IEAIIIVCL--LPLKEKVPYL-VTFSNATQNFAIVQRADKSIRANQALVRQLVASYVNNR 171
Query: 1462 TQ----NKQNQLS-KTERLHQASECLD 1483
+QN+++ +T RL A E D
Sbjct: 172 ENISSIKEQNEIAHETIRLQSAFEVWD 198
Score = 26.6 bits (57), Expect = 6.6
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 998 KKRCVK--DLPKDLQKKVLAKESLKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEAKK 1055
+K CV LPK L++++ K K +KA NE+E +E K E +K E K
Sbjct: 2 EKVCVSAWGLPKILEERLKEKYGDDWEKHVKAKAINEEELEEQVKAKAKEQQKTQRE--K 59
Query: 1056 SVKAYLDCVSQAKTEA--------EKKECEKLLTPEAR 1085
++ +L V K + E KE + L E +
Sbjct: 60 TLNGFLKKVGLKKRDMLQSTMLFDEVKEADVLFQAERK 97
>ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobacter pylori J99]
Length = 712
Score = 30.8 bits (68), Expect = 0.35
Identities = 18/49 (36%), Positives = 29/49 (58%), Gaps = 7/49 (14%)
Query: 1885 IDFSGVYDVKITN-----KSVVD--EIIKQSTKTLSREHEEITTSPKGG 1926
+ + G+ D++IT+ KSV D EI+K+ KT +R + E SP+ G
Sbjct: 566 MQYMGIDDLEITSPVSKAKSVADWEEIVKEYEKTYARVYSESACSPEAG 614
>ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter pylori J99]
Length = 171
Score = 30.4 bits (67), Expect = 0.46
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 23/131 (17%)
Query: 754 EAKKKLEEAKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTDKE 813
E K+LEE + +K VS+ +K KE E +AK+ E D K A T +
Sbjct: 61 EISKRLEEIQAQLK-----VSKEHKKKLLKELE-----QAKEKAELIISDANKEAYTITQ 110
Query: 814 RKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKKSV 873
+ +LQ K+ + +K S+A + E K+ ++ L K L E+KK
Sbjct: 111 KY--------ELQTKMDVENLIKN-----SKALMDLEVKKIKRELVESVFKDLRESKKVS 157
Query: 874 KAYLDCVSQAK 884
DCV+ K
Sbjct: 158 FNAQDCVNILK 168
Score = 29.6 bits (65), Expect = 0.78
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 23/133 (17%)
Query: 936 TLESKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTE 995
+LE K+LEE + +K VS+ + KE E +AK+ E D K A T
Sbjct: 59 SLEISKRLEEIQAQLK-----VSKEHKKKLLKELE-----QAKEKAELIISDANKEAYTI 108
Query: 996 ADKKRCVKDLPKDLQKKVLAKESLKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEAKK 1055
K +LQ K+ + +K SKA + E K+ ++ L K L E+KK
Sbjct: 109 TQKY--------ELQTKMDVENLIKN-----SKALMDLEVKKIKRELVESVFKDLRESKK 155
Query: 1056 SVKAYLDCVSQAK 1068
DCV+ K
Sbjct: 156 VSFNAQDCVNILK 168
Score = 26.6 bits (57), Expect = 6.6
Identities = 34/119 (28%), Positives = 53/119 (43%), Gaps = 21/119 (17%)
Query: 844 QAKTEAEKKECEKLLTPEARKLLEEAKKSVKAYL-DCVSQAKTEAEKKECEKLLTPEARK 902
QA+ + K+ +KLL K LE+AK+ + + D +A T +K E + +
Sbjct: 70 QAQLKVSKEHKKKLL-----KELEQAKEKAELIISDANKEAYTITQKYELQTKMD----- 119
Query: 903 LLEEXAKESVKAYLDCVSQAKNEAEKKECEKLLTLESKKKLEEAKKSVKAYLDCVSQAK 961
+E K S KA +D E K+ ++ L K L E+KK DCV+ K
Sbjct: 120 -VENLIKNS-KALMDL--------EVKKIKRELVESVFKDLRESKKVSFNAQDCVNILK 168
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE [Helicobacter
pylori J99]
Length = 469
Score = 30.4 bits (67), Expect = 0.46
Identities = 47/193 (24%), Positives = 71/193 (36%), Gaps = 29/193 (15%)
Query: 1074 KECEKLLTPEARKLLEEAKESVKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEQQVLDC 1133
K K + EA+K E+ + + K S KKE K P KK + ++ +
Sbjct: 141 KPTPKPIKKEAKKAKEKTTKHAHS-KHAHSPLNERSAKKEIPKKEIP--KKEIPKKEIPK 197
Query: 1134 LKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKK 1193
+ K E KK K K++ KK ES K K++ K + +A
Sbjct: 198 KEIPKKEIPKKEIPK---KEIPKKEAENESKNQIFIAEKNDTWIKTKRKKHKKIVLDAGH 254
Query: 1194 LLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKK---------SIKAY 1244
KDC + + N CEK + E K L +E+KK Y
Sbjct: 255 ----------GGKDCGAMSAN----LVCEKDIVLEVVKFLHKELKKRGYSVLLTRDKDIY 300
Query: 1245 LDCVSRARNEKEK 1257
+D V+R +K
Sbjct: 301 IDLVARTELANKK 313
Score = 26.9 bits (58), Expect = 5.1
Identities = 32/149 (21%), Positives = 66/149 (43%), Gaps = 16/149 (10%)
Query: 1254 EKEKKECEKLLTPEARKFLAKQVLNCLEKAGNEE-------ERKACLKNLPK-DLQENIL 1305
+KE K+ ++ T A A LN E++ +E +++ K +PK ++ + +
Sbjct: 148 KKEAKKAKEKTTKHAHSKHAHSPLN--ERSAKKEIPKKEIPKKEIPKKEIPKKEIPKKEI 205
Query: 1306 AKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARN---E 1362
K+ + + +A NE + + + + ++ + KK K LD ++
Sbjct: 206 PKKEIPKKEIPKKEAENESKNQI---FIAEKNDTWIKTKRKKHKKIVLDAGHGGKDCGAM 262
Query: 1363 KEKKECEKLLTPEARKFLAKELQQKDKAI 1391
CEK + E KFL KEL+++ ++
Sbjct: 263 SANLVCEKDIVLEVVKFLHKELKKRGYSV 291
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 30.4 bits (67), Expect = 0.46
Identities = 32/127 (25%), Positives = 56/127 (43%), Gaps = 16/127 (12%)
Query: 398 LLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKN------PLRAFYECISNGGNY 451
LL+ K +I ++ FND + ++ E+ KN P + YE + G+Y
Sbjct: 260 LLENSVVKATLIKPSVVFNDGLSPIK---MDKTELIFKNKQLLIQPQKITYETMELTGSY 316
Query: 452 EECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQV 511
L++ KL+ +K T Y D IK+ + + + LD K S+ + +++
Sbjct: 317 ATFSNLLEAPKLEVFLKTTPNYYGDSIKDLLSAYKVVLPLD-------KISMPSSADLKL 369
Query: 512 ALDCLKN 518
L LKN
Sbjct: 370 TLQFLKN 376
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 30.4 bits (67), Expect = 0.46
Identities = 41/183 (22%), Positives = 74/183 (40%), Gaps = 42/183 (22%)
Query: 422 TLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDC---- 477
TL Y E +D R F + N + E L++++ +K+TLE +++
Sbjct: 312 TLKEYRKYFE-KDMALQRRFQPILLNEPSINEALQILRG------LKETLETHHNITIND 364
Query: 478 ---IKNAKTEEERI-------KCLDLIKD----------------ENLKKSLLNQQKVQV 511
I +AK I K +DLI + ++K+S+ + +
Sbjct: 365 SALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKMQMESEPAKLSSVKRSIQRLEMEKQ 424
Query: 512 ALDCLKNAKTDEERNECLKLINDP-----EIREKFRKELELQKELQEYKDCIKNAKTEAE 566
AL+ + E LK ++D ++ +F E E+ KE+ K ++ K EAE
Sbjct: 425 ALEMENKESNHKRMQEILKELSDLKEEKIQLEAQFENEKEVFKEISRLKMEMEGLKKEAE 484
Query: 567 KNK 569
+ K
Sbjct: 485 RFK 487
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 30.4 bits (67), Expect = 0.46
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 18/166 (10%)
Query: 904 LEEXAKESVKAY---LDCVSQAKNEAEKKECEKLLTLESKKKLEEAKKSVKAYLDCVSQA 960
LEE + + K Y + + AKNE KK + + ++ ++ L +
Sbjct: 37 LEEAIEYNKKGYGHFIGTMVVAKNEDNKKLYDII-------DGQQRTTTIFMLLHVLVSK 89
Query: 961 KTEAEKKECEKLLTPEAKKLLE-----QQALDCLKNAKTEADKKRCVKDLPKDLQKKVLA 1015
+ E +K+E K L + + LE Q L + + C KD D + K
Sbjct: 90 QYEEDKRETRKYLYQKGELKLEVASQNQSFFKTLLEVAEKGNISHCEKDA--DTEGKQNL 147
Query: 1016 KESLKAYKDCVSKARNEKEKKECEKLLTPEAKKLLE-EAKKSVKAY 1060
E LKA D +SK E+ + E LL +L E + K+++ +
Sbjct: 148 FEVLKAILDKISKLSEEEVNERLEVLLKMVLMRLEEPDPGKAIRTF 193
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 30.0 bits (66), Expect = 0.60
Identities = 79/351 (22%), Positives = 141/351 (39%), Gaps = 52/351 (14%)
Query: 450 NYEECLKLIKD-KKLQDQMKKTLEAYNDCIKNA-------------KTEEERIKCLDLIK 495
N E LK + +KL+D+ E D +K+ KTE+ +I + K
Sbjct: 608 NQNEFLKKEPELEKLKDEKYLDFEKLKDFLKDRLIGHFRVRNKNERKTEKIKINKENFKK 667
Query: 496 DENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELELQKELQEYK 555
E L L +Q ++ A+D ++ +E +K IN + K+++
Sbjct: 668 FETLWAGLNHQARIAYAID------SESLIDEIVKNINSSFNVSSKIVSVTTHKKVETMG 721
Query: 556 DCIKNAKTEA--EKNKCLKGLSKEAIERLKQQALDCLKNA-----KTDEER-NECLKNIP 607
+ NAKTE K+ C+ L E I L + K+ DE + NE KN
Sbjct: 722 N---NAKTEIFERKSACVWSLH-EFISALSNKVKLSFKSVAKVLENIDENKFNEIKKNEQ 777
Query: 608 QDLQK--ELLADMSVKAYKDCVSKARNE----KEKQECEKLLTPEARKKLEQQVLDCLKN 661
+ L++ EL ++ + KD +S E K + E R+ L+ +
Sbjct: 778 EGLKRLEELFLEIIYQNIKDKISYQMRETTIKNRKNDAFYDEKGEIREFLDGSLGADKYE 837
Query: 662 AKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKTEAEKKEC----EKLLTPEAK 717
K ++KCL + + S+I K++++ D + + + + +P+
Sbjct: 838 IKNSSAQEKCLYENFMQVDSEI-EKDTIEESNDTKIIVFGKLPRVKIPIGLNQTYSPDFG 896
Query: 718 KLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKA 768
++E K+ + V + K +K E L PE K+K+ AKK +A
Sbjct: 897 YVVENNDKKVL-----LVVETKGVDKKSE----LRPEEKRKISTAKKFFEA 938
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 280
Score = 30.0 bits (66), Expect = 0.60
Identities = 38/133 (28%), Positives = 50/133 (37%), Gaps = 17/133 (12%)
Query: 938 ESKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAK-----KLLEQQALDCLKNA 992
ES K EE K+ K + K E KKE + P+ K K +
Sbjct: 69 ESAKPKEEPKEKPKK-----EEPKKEEPKKETKPKPKPKPKPKPKPKPKPKPEPKPKPEP 123
Query: 993 KTEADKKRCVKDLPKDLQKKVLAKESLKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEE 1052
K E KK K+ PK + K AKE + EK+K+E E+ K E
Sbjct: 124 KVEEPKKEEPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQE-------ESNKTSEG 176
Query: 1053 AKKSVKAYLDCVS 1065
A +AY VS
Sbjct: 177 ATSEAQAYNPGVS 189
Score = 29.3 bits (64), Expect = 1.0
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 1607 KKDDDKEKSKKSTAEAKAENNKIDKDVAETAKNISEIALKNKKEKSGE 1654
KK++ KE+ KK A+ +A+ + K V T K+I + K+K+E+S +
Sbjct: 129 KKEEPKEEPKKEEAKEEAKEKSVPKQV--TTKDI--VKEKDKQEESNK 172
Score = 29.3 bits (64), Expect = 1.0
Identities = 36/137 (26%), Positives = 62/137 (44%), Gaps = 12/137 (8%)
Query: 978 KKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESLKAYKDCVSKARNE----- 1032
K + +++ N KT A+ + K+ PK+ KK K+ + K+ K + +
Sbjct: 50 KVTMSLASINTNSNTKTNAESAK-PKEEPKEKPKKEEPKKE-EPKKETKPKPKPKPKPKP 107
Query: 1033 --KEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEK-LLTPEARKLLE 1089
K K + E PE K +EE KK +AK EA++K K + T + K +
Sbjct: 108 KPKPKPKPEPKPKPEPK--VEEPKKEEPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEKD 165
Query: 1090 EAKESVKAYKDCVSKAR 1106
+ +ES K + S+A+
Sbjct: 166 KQEESNKTSEGATSEAQ 182
Score = 27.7 bits (60), Expect = 3.0
Identities = 34/115 (29%), Positives = 50/115 (42%), Gaps = 8/115 (6%)
Query: 687 ESLKAYKDCVSQAKTEAEKKECEKLLT---PEAKKLLEEEAKESVKAYLDCVSQAKTEAE 743
ES K ++ + K E KKE K T P+ K + + K K + K E
Sbjct: 69 ESAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPKPEPKPKPEPKVEEP 128
Query: 744 KKECEKLLTPEAKKKLEEAK-KSVKAYL---DCVSRARNEKEKKECEKLLTPEAK 794
KKE E P+ ++ EEAK KSV + D V ++E + + T EA+
Sbjct: 129 KKE-EPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQEESNKTSEGATSEAQ 182
Score = 26.6 bits (57), Expect = 6.6
Identities = 42/174 (24%), Positives = 65/174 (37%), Gaps = 25/174 (14%)
Query: 750 LLTPEAKKKLEEAKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAK 809
LL +A + L +A + K + S N K E E K E+ + K +
Sbjct: 34 LLREDAPEPLAQAG-TTKVTMSLASINTNSNTKTNAESAKPKEEPK--EKPKKEEPKKEE 90
Query: 810 TDKERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEA 869
KE K K PK K + K E + K K+ P+ + EE
Sbjct: 91 PKKETKPKPKPKPKPKPKPK-------------PKPKPEPKPKPEPKVEEPKKEEPKEEP 137
Query: 870 KKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEXAKESVKAYLDCVSQAK 923
KK +AK EA++K K +T + ++ +ES K S+A+
Sbjct: 138 KKE---------EAKEEAKEKSVPKQVTTKDIVKEKDKQEESNKTSEGATSEAQ 182
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 30.0 bits (66), Expect = 0.60
Identities = 30/126 (23%), Positives = 53/126 (41%), Gaps = 15/126 (11%)
Query: 191 DKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNK-KPFTQQKNLDEETQELNEE 249
++ E QT D + + ++ ++ L D L K P +QK E+ N E
Sbjct: 72 EQLEFYQTNRDYDPSLDNDENSSELLDAFTSSLENLEKQKINPIREQKR---ESGWQNNE 128
Query: 250 DDQENNEYQEETQTDLI----------DDETSKKTQQHSPQDLSNEEATEANHFENLLKE 299
D++EN+E ++ + DL ETSK+ ++ + +E E F +
Sbjct: 129 DNKENSELEKAFKKDLSFSQSNPIPLDKKETSKEEKEEELES-KEKEPKETLGFAHSFSS 187
Query: 300 SKESSD 305
S+ S D
Sbjct: 188 SRFSLD 193
Score = 28.9 bits (63), Expect = 1.3
Identities = 28/169 (16%), Positives = 60/169 (34%)
Query: 69 QMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQ 128
+M +++ + + D F K + V + K +E L+ ++ E +
Sbjct: 21 EMFGSNDKSKDMMKAFMKDLAFAKDKNEVIKAQDNELVKEFMQELSSLSFKEQLEFYQTN 80
Query: 129 EETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNF 188
+ L +DE S + L N E + N +ES ++ +E + F
Sbjct: 81 RDYDPSLDNDENSSELLDAFTSSLENLEKQKINPIREQKRESGWQNNEDNKENSELEKAF 140
Query: 189 DGDKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQK 237
D S + + ETS+ + K+ ++ + F+ +
Sbjct: 141 KKDLSFSQSNPIPLDKKETSKEEKEEELESKEKEPKETLGFAHSFSSSR 189
>ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicobacter pylori J99]
Length = 500
Score = 29.6 bits (65), Expect = 0.78
Identities = 21/64 (32%), Positives = 36/64 (55%), Gaps = 2/64 (3%)
Query: 672 LKDLPKDLQSDILAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAY 731
LK+L K+++SD + K++ ++ + VS +E EKK L E KK +A S Y
Sbjct: 201 LKELVKNIKSDFIPKKAKQSIEVSVSCDDSEFEKKVL--FLQEEIKKGEIFQAVLSRSFY 258
Query: 732 LDCV 735
++C+
Sbjct: 259 MECL 262
Score = 26.2 bits (56), Expect = 8.6
Identities = 14/39 (35%), Positives = 24/39 (60%), Gaps = 5/39 (12%)
Query: 542 RKELELQKELQEYKDCIKNAKTEAEKNKCLKGLSKEAIE 580
R + E+ KELQ+ K+ +KN K++ K +K++IE
Sbjct: 189 RFKTEIAKELQDLKELVKNIKSDFIPKK-----AKQSIE 222
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 29.6 bits (65), Expect = 0.78
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 10/151 (6%)
Query: 100 KKPFTQQKNLDEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEEATE 159
+KP T Q++L ++T+ LNE + + E K + S Q S +E +
Sbjct: 280 QKPLTSQEDLLKDTENLNETTPKPTHLSPLELA------NAEKLAKLESEQLQSEQEFLK 333
Query: 160 ANHFENLLKES-KESSDHHLDNPTETQTNFDGDKSEETQTQMDSEGNETSESSNGSLADK 218
A E KE+ K+ +H N ++ + E+ TQ+ ++ ++ N
Sbjct: 334 AKEQELKRKEALKKKLEHERGNAGHIESQTKIEVGEDIPTQVQAQIPKSRVRLNEREIYD 393
Query: 219 LFKKARKLVDNKKPFT---QQKNLDEETQEL 246
L K D K FT QK D +++
Sbjct: 394 LDYAIVKAKDLKPSFTTGGTQKRTDMNEEQI 424
Score = 26.6 bits (57), Expect = 6.6
Identities = 21/68 (30%), Positives = 31/68 (44%), Gaps = 12/68 (17%)
Query: 541 FRKELELQKELQEYKDCIKNAKTEAEKNKCLKGLS---KEAIERLKQQALDCLKNAKTDE 597
F K LEL KN+K K ++ L+ K+A E +K++A D T+E
Sbjct: 33 FSKNLELSA---------KNSKFTNNTLKIIEELNNGVKQASEEIKEKAFDFSNEKLTNE 83
Query: 598 ERNECLKN 605
+ E L N
Sbjct: 84 QIKELLNN 91
Score = 26.2 bits (56), Expect = 8.6
Identities = 25/93 (26%), Positives = 41/93 (43%), Gaps = 9/93 (9%)
Query: 230 KKPFTQQKNLDEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEEATE 289
+KP T Q++L ++T+ LNE + + E K + S Q S +E +
Sbjct: 280 QKPLTSQEDLLKDTENLNETTPKPTHLSPLELA------NAEKLAKLESEQLQSEQEFLK 333
Query: 290 ANHFENLLKES-KESSDHHLDNP--TETQTNFD 319
A E KE+ K+ +H N E+QT +
Sbjct: 334 AKEQELKRKEALKKKLEHERGNAGHIESQTKIE 366
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 29.6 bits (65), Expect = 0.78
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 377 FSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAE----- 431
F D L ++DE QI+Q N L NE N + K + + +++Y + E
Sbjct: 134 FFNDLILLLDDEGQIKQGANATLDALNESLNRLKK------ESTKIIHHYAHSKELAPYL 187
Query: 432 IEDKNPLRAFYECISNGGNYEECLK 456
++ ++ L+ YEC+ + +K
Sbjct: 188 VDTQSHLKHGYECLLLKSGFSSAIK 212
Score = 28.9 bits (63), Expect = 1.3
Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 14/123 (11%)
Query: 439 RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN 498
+AFY G + E+ LI++ +++ L+ N+ ++NA E+E +K L++ E
Sbjct: 506 KAFY-----GEDKEKLNVLIENSST---LERELKQKNEHLENALKEQEDLKNAWLLEMEK 557
Query: 499 LK-----KSLLNQQKVQVALDCLKNAKTDEERNECLKLIND-PEIREKFRKELELQKELQ 552
K K L ++ Q AL+ LK+ ++ + K I+ EI K + + E+ + +
Sbjct: 558 QKEIFHHKKLELEKSYQQALNILKSEVASKDTSSMHKEIHKASEILNKHKTDQEIPQIIT 617
Query: 553 EYK 555
++
Sbjct: 618 SFQ 620
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 29.6 bits (65), Expect = 0.78
Identities = 44/181 (24%), Positives = 70/181 (38%), Gaps = 33/181 (18%)
Query: 1177 EKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQE 1236
EK K E + PE KK + K L + EE++ E+ E +K++EQ+
Sbjct: 111 EKPKPEPKPKPKPEPKKPNHKHK--------ALKKVEKVEEKKVVEE--KKEEKKVVEQK 160
Query: 1237 VKKSIKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNL 1296
V++ + +EKK +K P FL K+V +E K
Sbjct: 161 VEQ------------KKIEEKKPVKKEFDPNQLSFLPKEV-----APPRQENNKGLDNQT 203
Query: 1297 PKDLQENILAKESL----KAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAY 1352
+D+ E L E A KD + + R + L P+ L Q+ +V+ Y
Sbjct: 204 RRDIDE--LYGEEFGDLGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFY 261
Query: 1353 L 1353
L
Sbjct: 262 L 262
Score = 29.3 bits (64), Expect = 1.0
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 1176 NEKEK--KECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLL 1233
N K K K+ EK+ E KK++EE KE K + + Q + EE++ +K P L
Sbjct: 129 NHKHKALKKVEKV---EEKKVVEEKKEEKKVVEQKVEQ-KKIEEKKPVKKEFDPNQLSFL 184
Query: 1234 EQEV 1237
+EV
Sbjct: 185 PKEV 188
Score = 28.5 bits (62), Expect = 1.7
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 1028 KARNEKEK--KECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAR 1085
K N K K K+ EK+ E KK++EE K+ K V Q K E EKK +K P
Sbjct: 126 KKPNHKHKALKKVEKV---EEKKVVEEKKEEKKVVEQKVEQKKIE-EKKPVKKEFDPNQL 181
Query: 1086 KLL 1088
L
Sbjct: 182 SFL 184
Score = 28.1 bits (61), Expect = 2.3
Identities = 19/60 (31%), Positives = 27/60 (44%)
Query: 819 KDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKKSVKAYLD 878
K PK KK K ++ V + K EKKE +K++ + + E KK VK D
Sbjct: 118 KPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVVEQKVEQKKIEEKKPVKKEFD 177
Score = 27.3 bits (59), Expect = 3.9
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 1325 ERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKEL 1384
+ +A +K+ E +K++E+ KK K ++ + +EKK +K P FL KE+
Sbjct: 131 KHKALKKVEKVEEKKVVEE--KKEEKKVVEQKVEQKKIEEKKPVKKEFDPNQLSFLPKEV 188
>ref|NP_222894.1| putative [Helicobacter pylori J99]
Length = 268
Score = 29.6 bits (65), Expect = 0.78
Identities = 32/150 (21%), Positives = 66/150 (43%), Gaps = 16/150 (10%)
Query: 459 KDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDENLKKSL-LNQQKVQVALDCLK 517
KD+K D+ E+ N + + K E++ K +D IK + + S+ + + Q+ +
Sbjct: 68 KDEKKDDEF----ESLN--MDSPKQEDKLDKVVDNIKKQESENSMPIQTDQAQMEM---- 117
Query: 518 NAKTDEERNEC---LKLINDPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNKCLKGL 574
KT EE+ E LK + + + + +KE K + EA K+K
Sbjct: 118 --KTTEEKQESQKELKAVEPIPMSTQKESQAVAKKETPHKKPKVAPKDKEAHKDKAKHAA 175
Query: 575 SKEAIERLKQQALDCLKNAKTDEERNECLK 604
+ +++ ++ + N+KT+ + L+
Sbjct: 176 KEPKVKKEARKEVSKKANSKTNLTKGHYLQ 205
Score = 27.3 bits (59), Expect = 3.9
Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 9/188 (4%)
Query: 760 EEAKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTDKERKKCLK 819
+E K L+ S + +K K + + E++ + Q KT +E+++
Sbjct: 69 DEKKDDEFESLNMDSPKQEDKLDKVVDNIKKQESENSMPIQTDQAQMEMKTTEEKQES-- 126
Query: 820 DLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKKSVKAYLDC 879
QK++ A E + SQA + E + + P+ ++ ++ K
Sbjct: 127 ------QKELKAVEPIPMSTQKESQAVAKKETPHKKPKVAPKDKEAHKDKAKHAAKEPKV 180
Query: 880 VSQAKTEAEKKECEKL-LTPEARKLLEEXAKESVKAYLDCVSQAKNEAEKKECEKLLTLE 938
+A+ E KK K LT + A KA+L +Q ++ E + K +
Sbjct: 181 KKEARKEVSKKANSKTNLTKGHYLQVGVFAHTPNKAFLQEFNQFPHKIEDRGATKRYLIG 240
Query: 939 SKKKLEEA 946
K +EA
Sbjct: 241 PYKSKQEA 248
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 29.3 bits (64), Expect = 1.0
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 111 EETQELNEEDDQENNEYQEETQTDLID--DETSKKTQQHSPQDLSNEEATEANHFENLLK 168
EET L + ++N E +E +L+ E K HS D NE A + ++ EN K
Sbjct: 469 EETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPTHSLLDFLNESALDVHNTENAQK 528
Query: 169 ES 170
S
Sbjct: 529 VS 530
Score = 29.3 bits (64), Expect = 1.0
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 241 EETQELNEEDDQENNEYQEETQTDLID--DETSKKTQQHSPQDLSNEEATEANHFENLLK 298
EET L + ++N E +E +L+ E K HS D NE A + ++ EN K
Sbjct: 469 EETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPTHSLLDFLNESALDVHNTENAQK 528
Query: 299 ES 300
S
Sbjct: 529 VS 530
>ref|NP_223917.1| TRYPTOPHAN SYNTHASE BETA CHAIN [Helicobacter pylori J99]
Length = 393
Score = 29.3 bits (64), Expect = 1.0
Identities = 21/59 (35%), Positives = 32/59 (53%), Gaps = 8/59 (13%)
Query: 787 KLLTPEAKKLLEQQALD-CLKNAKTDKERKKCLKDL-----PKDLQKKVLAKESVKAYL 839
+LL P ++L +QA D CLK+ + KE + LKD P L + +++ VK YL
Sbjct: 17 ELLVPALREL--EQAFDTCLKDEEFQKEYFRLLKDFVGRPSPLTLCQNIVSNPKVKLYL 73
Score = 26.6 bits (57), Expect = 6.6
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 641 KLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDL-----PKDLQSDILAKESLKAY 692
+LL P A ++LEQ CLK+ + +E + LKD P L +I++ +K Y
Sbjct: 17 ELLVP-ALRELEQAFDTCLKDEEFQKEYFRLLKDFVGRPSPLTLCQNIVSNPKVKLY 72
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 29.3 bits (64), Expect = 1.0
Identities = 88/475 (18%), Positives = 171/475 (35%), Gaps = 88/475 (18%)
Query: 1185 KLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQ-----EVKK 1239
K +P K + + K S ++ L+ A E E L + + +LE ++ K
Sbjct: 65 KTASPVLIKNIGQMKRS--HLENALNYALENSETAYNEMFLECDKQFILESWLNDFDLTK 122
Query: 1240 SIKAYLDCVSRARNEKEKKECEKLL--TPEARKF-LAKQVLNCLEKAGNEEERKACLKNL 1296
+ V +++ +++ + LL T E+ K L + + A + C N
Sbjct: 123 DYNETMHLVFSIKDKPDEETMQGLLHSTWESLKIRLPEYKFALVPHAHQDHAHIHCFINK 182
Query: 1297 PKDLQENILAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKK--SVKAYLD 1354
L L + + K+ ++ R+E R E LL+ E + E ++K+ ++K L
Sbjct: 183 TNQLTRRRLRFKGREDCKEFFNELRSEFAYRLNEHLLSEEYLYVNEPKLKELDNIKLQLQ 242
Query: 1355 CVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLS 1414
+ EKE+K E++ +P+ L K LQ++
Sbjct: 243 DL-----EKEEKALEQIKSPQDEWDLNKALQKE--------------------------- 270
Query: 1415 DEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQNLYSDLIQEIQNKRTQNKQNQLSKTER 1474
YLQE ++K A L + K Q + I +K T + + + +R
Sbjct: 271 ------YLQELKDKNKAKALDIQNNHSTPLK-QKISKFKIALFNHKDTSDDEKESLSIDR 323
Query: 1475 LHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDN 1534
+ + ++ + + L+ +S E +LG ++ E+D +N F N
Sbjct: 324 IDK-------------RKPVSEHLKNMSKHELYELLGFYQK--ELD----KKQNHSAFKN 364
Query: 1535 MAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDIAKQYETEKTIKDKN 1594
A +N + D ++ + E + K +K + DKN
Sbjct: 365 FAI------------------LNGLDRDFERETKGYSVLKKKEMLLNKLKHLDKRLLDKN 406
Query: 1595 LEAKLAKALGGNKKDDDKEKSKKSTAEAKAENNKIDKDVAETAKNISEIALKNKK 1649
LA+ K + + + + A+ ++ KD T K +K
Sbjct: 407 SHLLLAQLRNEVKTKQNTQYNTLTNPILLAKALELSKDKRPTLKTFKNAYFSARK 461
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 29.3 bits (64), Expect = 1.0
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 917 DCVSQAKNEAEKKECEKLLTLESKKKLEEAKKSVKAYLDCVSQAKTEAEK 966
+ ++Q KN+ KEC + L E K LEE K +K K A+K
Sbjct: 413 ELLAQIKNQTPSKEC-RALNEEEVKTLEEVKNIIKTPKPLQKDLKKNAKK 461
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 28.9 bits (63), Expect = 1.3
Identities = 53/235 (22%), Positives = 94/235 (39%), Gaps = 26/235 (11%)
Query: 1068 KTEAEKKECEKLLTPEARKLLEEAKESVKAYKDCV----SKARNEKEKKECEKLLTPEAK 1123
KT EK + L+ + + + V+ + V S +N E EK+LT K
Sbjct: 36 KTHEEKNQLNSRLSSLGEAIRSKELQKVEIERQMVALKKSLEKNRNESLVQEKVLTNYRK 95
Query: 1124 KLLEQQVLDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEK-EKKE 1182
L D L+ ++ K+ L L + L +++ + D + + E +
Sbjct: 96 SL------DHLQKQRSFLQKRVFDTLLEDFLFSQALKGQNLASSNDVILQVAFENLHQST 149
Query: 1183 CEKL--LTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKS 1240
K+ L+ E KKL +A E + + S ++ R + K L E KL+ ++K
Sbjct: 150 LSKMSQLSQEEKKLNVQALEVKSSIQKISSVIDEQKTRESTLKSLQTEQNKLI-LSMQKD 208
Query: 1241 IKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKN 1295
Y +S EKE++ LL + LN +++ EER + K+
Sbjct: 209 YAIYNQRLSLL--EKERQNLNALL----------KRLNIIKQNRENEERVSLKKS 251
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 28.5 bits (62), Expect = 1.7
Identities = 33/129 (25%), Positives = 52/129 (39%), Gaps = 15/129 (11%)
Query: 905 EEXAKESVKAYLDCVSQAKNEAEKKECEKLLTLESKKKLEEAKKSVKAYLDCVSQAKTEA 964
+E +KE++ Y DC +N E K ESK++ + S+K +L S TE
Sbjct: 222 DEESKENLLNYKDCWDNGENYVILDEAHKGNKTESKRQAIFSLLSLKGFLFNFSATFTEE 281
Query: 965 EK----------KECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVL 1014
E KL + LL++ L+ K K D+++ + L K +L
Sbjct: 282 SDLITAVYNLSVGEWVKLGYGKESVLLKKNNLNAFKELKDLNDREKEIA-----LLKALL 336
Query: 1015 AKESLKAYK 1023
K YK
Sbjct: 337 LLGMQKRYK 345
Score = 28.1 bits (61), Expect = 2.3
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 10/120 (8%)
Query: 957 VSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKT-EADKKRCVKDLP-----KDLQ 1010
+ Q + E EK K + K ++ + L +KN A K +K++ DL
Sbjct: 165 IKQFEKEIEKYNRNK----DYSKQIDFKNLKSVKNKDFYRAPKDSLMKEIALFYYRADLM 220
Query: 1011 KKVLAKESLKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTE 1070
+KE+L YKDC N E K E+K+ + S+K +L S TE
Sbjct: 221 SDEESKENLLNYKDCWDNGENYVILDEAHKGNKTESKRQAIFSLLSLKGFLFNFSATFTE 280
Score = 27.3 bits (59), Expect = 3.9
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 716 AKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSR 775
A + +EE+KE++ Y DC + E K E+K++ + S+K +L S
Sbjct: 217 ADLMSDEESKENLLNYKDCWDNGENYVILDEAHKGNKTESKRQAIFSLLSLKGFLFNFSA 276
Query: 776 ARNEKEK----------KECEKLLTPEAKKLLEQQALDCLKNAKTDKERKK 816
E+ E KL + LL++ L+ K K +R+K
Sbjct: 277 TFTEESDLITAVYNLSVGEWVKLGYGKESVLLKKNNLNAFKELKDLNDREK 327
Score = 26.9 bits (58), Expect = 5.1
Identities = 23/81 (28%), Positives = 31/81 (37%), Gaps = 4/81 (4%)
Query: 1134 LKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKK 1193
+K + E +K KD K + K L K + RA + KE
Sbjct: 165 IKQFEKEIEKYNRNKDYSKQIDFKNLKSVKNKDFY----RAPKDSLMKEIALFYYRADLM 220
Query: 1194 LLEEAKESLKAYKDCLSQARN 1214
EE+KE+L YKDC N
Sbjct: 221 SDEESKENLLNYKDCWDNGEN 241
Score = 26.6 bits (57), Expect = 6.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 678 DLQSDILAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKK 718
DL SD +KE+L YKDC + E K E+K+
Sbjct: 218 DLMSDEESKENLLNYKDCWDNGENYVILDEAHKGNKTESKR 258
>ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter pylori J99]
Length = 459
Score = 28.5 bits (62), Expect = 1.7
Identities = 18/63 (28%), Positives = 31/63 (48%), Gaps = 1/63 (1%)
Query: 213 GSLADKLFKKARKLVDNKKPFTQQ-KNLDEETQELNEEDDQENNEYQEETQTDLIDDETS 271
G + + K + K D K Q+ K LD++T E D + +E ++E +I+D+
Sbjct: 374 GKVPENENKFSLKEADLKHHLEQELKKLDDKTPISKEADKDKKSEEEKEVTPKMINDDIQ 433
Query: 272 KKT 274
KT
Sbjct: 434 LKT 436
Score = 28.5 bits (62), Expect = 1.7
Identities = 18/63 (28%), Positives = 31/63 (48%), Gaps = 1/63 (1%)
Query: 83 GSLADKLFKKARKLVDNKKPFTQQ-KNLDEETQELNEEDDQENNEYQEETQTDLIDDETS 141
G + + K + K D K Q+ K LD++T E D + +E ++E +I+D+
Sbjct: 374 GKVPENENKFSLKEADLKHHLEQELKKLDDKTPISKEADKDKKSEEEKEVTPKMINDDIQ 433
Query: 142 KKT 144
KT
Sbjct: 434 LKT 436
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 28.5 bits (62), Expect = 1.7
Identities = 28/114 (24%), Positives = 47/114 (40%), Gaps = 6/114 (5%)
Query: 478 IKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEI 537
+ AK +ER K + + L +++ L+ LKN E K+I
Sbjct: 8 VTGAKAAQERKK-----EQPTIANGLDKNAFMKLFLEQLKNQDPTAPM-ETDKIITQTAQ 61
Query: 538 REKFRKELELQKELQEYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLK 591
+ + E +K +QE +K+ K E K +G K+ +E L + D LK
Sbjct: 62 LTQVEMQEENKKTMQEVASAMKSNKETNESLKDFQGALKDTMENLNKGMDDSLK 115
>ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99]
Length = 451
Score = 28.5 bits (62), Expect = 1.7
Identities = 62/265 (23%), Positives = 102/265 (38%), Gaps = 36/265 (13%)
Query: 514 DCLKNAKTDEERNECLKLINDPEIREKFRKELELQKE----------LQEYKDCIKNAKT 563
+ LKNA E E LI P + +K+ + E L + ++C+ +
Sbjct: 73 EVLKNA-LKELGVETKDLIGSPNFTKFEKKDTHFEIEADIGLKPTIVLDKIQECVPSVGV 131
Query: 564 EAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKAY 623
E + + ERLKQ A D K TD +R K D +
Sbjct: 132 EVPNEEKVN-------ERLKQLAKDYAKFVDTDSQR------------KAQNDDKLTIDF 172
Query: 624 KDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDI 683
+ + A E K E L+ K++ + L + EE++ L P ++
Sbjct: 173 EGFIDNAPFEGGKAENFSLIL--GSKQMLEDFEKALLGMQASEEKEFPL-TFPSGYHAEH 229
Query: 684 LA-KESLKAYKDCVSQAKTEAE-KKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTE 741
LA KE+L K Q + E E K++ + E KE VK L ++A+
Sbjct: 230 LAGKEALFKVKLRQIQVREALEINDELAKIVLANEENATLELLKERVKGQLFLENKARLY 289
Query: 742 AEKKECEKLLTPEAKKKLEEAKKSV 766
E+ + EKL+ +K L + K++
Sbjct: 290 NEELK-EKLIENLDEKILFDLPKTI 313
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 28.5 bits (62), Expect = 1.7
Identities = 37/184 (20%), Positives = 76/184 (41%), Gaps = 13/184 (7%)
Query: 780 KEKKECEKLLTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYL 839
K+ K E L K L+E A + LKN++ + C K L + + K +++ +
Sbjct: 43 KDFKAGELLYQSHFKPLVEFIAEELLKNSRAKIIQSNCNKALKVVEELQNTIKTTIEKQI 102
Query: 840 DCVSQAKTEAEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLL--- 896
D +T+ ++E L K + + +KS ++Q + K+ E++
Sbjct: 103 D-PGIKETQEHQQEARFNLDRSTDKFISDLEKSA---FSKINQFEFNFRKEMHERIERGI 158
Query: 897 -TPEARKLLEEXAKESVKAYLDCVSQAKNEAEKKECEKLLTLESKKKLEEAKKSVKAYLD 955
E +++ K+ ++ + E KECE+ K +E+ ++ VK L
Sbjct: 159 GNNECKEIFGNELKQRKTKLIEDI-----ERRFKECEEQFRGSVGKNIEQLEERVKDSLA 213
Query: 956 CVSQ 959
+ +
Sbjct: 214 IIKR 217
Score = 27.7 bits (60), Expect = 3.0
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 1055 KSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESVKAYKD 1100
KS+ ++ D S K ++KE +K L K++++ K +++YK+
Sbjct: 274 KSIWSFFD--SDYKKSQQRKEVDKNLHQICEKIVQDVKSRIESYKN 317
Score = 27.3 bits (59), Expect = 3.9
Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 5/154 (3%)
Query: 1109 KEKKECEKLLTPEAKKLLEQQVLDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYL 1168
K+ K E L K L+E + LKN++ + + C K L + + K +++ +
Sbjct: 43 KDFKAGELLYQSHFKPLVEFIAEELLKNSRAKIIQSNCNKALKVVEELQNTIKTTIEKQI 102
Query: 1169 DCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPE 1228
D + E +++ L K + + K + R E R + E
Sbjct: 103 DPGIKETQEHQQEARFNLDRSTDKFISDLEKSAFSKINQFEFNFRKEMHERIERGIGNNE 162
Query: 1229 ARKLLEQEVKKSIKAYLDCVSRARNEKEKKECEK 1262
+++ E+K+ ++ + E+ KECE+
Sbjct: 163 CKEIFGNELKQRKTKLIEDI-----ERRFKECEE 191
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 28.1 bits (61), Expect = 2.3
Identities = 34/163 (20%), Positives = 69/163 (41%), Gaps = 8/163 (4%)
Query: 995 EADKKRCVKDLPKDLQKKVLAKESLKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEAK 1054
E + ++++P+ ++ E K K+ N EK + + E + L+E
Sbjct: 29 EKEINSLLENVPRQDDEEFQKNEINKFLKNAYGYDCNTYEKVDSVIYVDKEVRVLIEV-- 86
Query: 1055 KSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEA-KESVKAYKDCVSKARNEKEKKE 1113
K++ + + K C+ +L LEE KE + K + +E +
Sbjct: 87 KALNNKTEFPKNRENPLSKAFCQMVLY-----FLEEIEKEKNNSLKHTIICNAHEFFLFD 141
Query: 1114 CEKLLTPEAKKLLEQQVLDCLKNAKTEADKKRCVKDLPKDLQK 1156
C+ LL+ + K +++ + K T++ K + KDL + LQ+
Sbjct: 142 CKDLLSLKEDKRIKKFYKNYAKKEGTDSSKPKFYKDLEQFLQE 184
Score = 28.1 bits (61), Expect = 2.3
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 638 ECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSD 682
+C+ LL+ + K++++ + K TD + K KDL + LQ D
Sbjct: 141 DCKDLLSLKEDKRIKKFYKNYAKKEGTDSSKPKFYKDLEQFLQED 185
Score = 27.7 bits (60), Expect = 3.0
Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 11/165 (6%)
Query: 665 DEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEA 724
++E L+++P+ + E K K+ EK + + E + L+E +A
Sbjct: 29 EKEINSLLENVPRQDDEEFQKNEINKFLKNAYGYDCNTYEKVDSVIYVDKEVRVLIEVKA 88
Query: 725 KESVKAYLDCVSQAKTEAEKKECEKLL--TPEAKKKLEEAKKSVKAYLDCVSRARNEKEK 782
+ + + K C+ +L E +K E S+K + C + +E
Sbjct: 89 LNNKTEF---PKNRENPLSKAFCQMVLYFLEEIEK---EKNNSLKHTIICNA---HEFFL 139
Query: 783 KECEKLLTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQK 827
+C+ LL+ + K +++ + K TD + K KDL + LQ+
Sbjct: 140 FDCKDLLSLKEDKRIKKFYKNYAKKEGTDSSKPKFYKDLEQFLQE 184
Score = 26.9 bits (58), Expect = 5.1
Identities = 40/181 (22%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 832 KESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKTEAEKKE 891
KE+++ + ++ +++ E+ E K L+ A DC + EK +
Sbjct: 22 KETIENFEKEINSLLENVPRQDDEEFQKNEINKFLKNAYG-----YDCNTY-----EKVD 71
Query: 892 CEKLLTPEARKLLEEXAKESVKAYLDCVSQAKNEAEKKECEKLLT-LESKKKLEEAKKSV 950
+ E R L+E A + + +N K C+ +L LE +K E S+
Sbjct: 72 SVIYVDKEVRVLIEVKALNNKTEF---PKNRENPLSKAFCQMVLYFLEEIEK--EKNNSL 126
Query: 951 KAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQ 1010
K + C + E +C+ LL+ + K +++ + K T++ K + KDL + LQ
Sbjct: 127 KHTIICNAH---EFFLFDCKDLLSLKEDKRIKKFYKNYAKKEGTDSSKPKFYKDLEQFLQ 183
Query: 1011 K 1011
+
Sbjct: 184 E 184
Score = 26.6 bits (57), Expect = 6.6
Identities = 19/74 (25%), Positives = 33/74 (43%)
Query: 531 LINDPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCL 590
LI+ + + +K ++K++QEYKD + K K I+ LK L
Sbjct: 655 LISRFNLNDDLKKIPNIKKKIQEYKDLVAQYKDPNPLYPLNKADLINKIQDLKNTFSLTL 714
Query: 591 KNAKTDEERNECLK 604
K+ KT E + ++
Sbjct: 715 KDPKTKAELEKTIE 728
>ref|NP_224114.1| putative component of cation transport for cbb3-type oxidase
[Helicobacter pylori J99]
Length = 788
Score = 28.1 bits (61), Expect = 2.3
Identities = 32/131 (24%), Positives = 47/131 (35%), Gaps = 33/131 (25%)
Query: 1255 KEKKECEKLLTPEARKFLAKQVLNCLEKAG---------NEEERKACLKNL--------- 1296
K K C + E K AK+V+ L+ G NE K C K L
Sbjct: 606 KNKTLCALFILEERLKANAKEVIQALQNQGLELEILSGDNESSVKECAKKLGISKYHAHL 665
Query: 1297 -PKDLQENILAKE--------------SLKAYKDCLSQARNEEERRACEKLLTPEARKLL 1341
P+D + I + + +LK L ++ + AC+ LL E LL
Sbjct: 666 TPEDKAQIISSYKGVCAMVGDGNNDALALKQASVSLGFEKSALSKSACDILLLEEDLSLL 725
Query: 1342 EQEVKKSVKAY 1352
E+ + K Y
Sbjct: 726 EKAFHNAQKVY 736
Score = 28.1 bits (61), Expect = 2.3
Identities = 72/305 (23%), Positives = 108/305 (34%), Gaps = 58/305 (19%)
Query: 435 KNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLI 494
KNPL F E + L K KK+ TL +K EE
Sbjct: 482 KNPLIVFKEALF-------LETLAKVKKIFIDKTGTLTQKEVLLKEKIIHEEF------- 527
Query: 495 KDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELELQKELQEY 554
DE L KSLL ++ LK DE E ++ ++ ++ E L L+
Sbjct: 528 -DERLLKSLLKTREHLAHNAILKTLDGDEVDLEKIEFFAHG-LKASYQNETLLVGSLKFL 585
Query: 555 KDCIKNAKTEAEKNKCLKGLSKEAI--------ERLKQQALDCLKNAKTDEERNECLKNI 606
+ K + N + G +K ERLK A + + + L+N
Sbjct: 586 NAMGVDLKVKESAN-IMVGFAKNKTLCALFILEERLKANAKEVI----------QALQN- 633
Query: 607 PQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDE 666
Q L+ E+L+ + + K+C K K LTPE + Q++ K
Sbjct: 634 -QGLELEILSGDNESSVKECAKKLGISKYHAH----LTPEDKA----QIISSYKGVCA-- 682
Query: 667 ERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEAKE 726
+ D +D LA LK + K+ K C+ LL E LLE+
Sbjct: 683 --------MVGDGNNDALA---LKQASVSLGFEKSALSKSACDILLLEEDLSLLEKAFHN 731
Query: 727 SVKAY 731
+ K Y
Sbjct: 732 AQKVY 736
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 28.1 bits (61), Expect = 2.3
Identities = 30/104 (28%), Positives = 46/104 (43%), Gaps = 14/104 (13%)
Query: 1230 RKLLEQEVKKSIK-AYLDCVSRARNE-----KEKKECEKLLTPEA-------RKFLAKQ- 1275
+ LL+++ KKS A+ CV + NE KE EA RK +Q
Sbjct: 44 KSLLDEDKKKSFNIAFSPCVIKELNEFLLEFGSFKETRSTFIEEALIRHLKHRKNTQEQK 103
Query: 1276 VLNCLEKAGNEEERKACLKNLPKDLQENILAKESLKAYKDCLSQ 1319
+L LE+ N+E+ NL + I+ K++ +KD L Q
Sbjct: 104 LLKQLERLQNKEKGIMKTMNLNEFFTHKIIYKDTPLKFKDTLEQ 147
>ref|NP_222979.1| putative [Helicobacter pylori J99]
Length = 179
Score = 27.7 bits (60), Expect = 3.0
Identities = 25/84 (29%), Positives = 45/84 (52%), Gaps = 11/84 (13%)
Query: 1182 ECEKLLTPEAKK--LLEEAKESLKAYKDCLSQARNEEERRACEKLLT----PEARKLLEQ 1235
E +K+L E +K +LE A+ + ++ L+ RN++E E LL E+R++LE+
Sbjct: 48 ELKKILLEENRKKSVLEYAQ---RHFETALANYRNQKE--TSESLLKIFNDEESRRILEK 102
Query: 1236 EVKKSIKAYLDCVSRARNEKEKKE 1259
+KK AY ++N +K +
Sbjct: 103 ILKKCFDAYKIKPLLSQNPSQKTQ 126
>ref|NP_222926.1| putative [Helicobacter pylori J99]
Length = 161
Score = 27.7 bits (60), Expect = 3.0
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 18/127 (14%)
Query: 712 LTPEAKKLLEEEAK--ESVKAYLDCVSQAKTEAEKKECEKL-----LTPEAKKKLEEAKK 764
L+ + LLE++ K ++ YL S + EA K + + L PE ++ EE +
Sbjct: 15 LSAKIDALLEQQKKVISLLETYLSVYSTPQ-EASNKLFKGISQGMELAPEIAQEDEEKRL 73
Query: 765 SVKAYLDCVSRARNEKE---KKEC-EKLLTPEAKKLLEQQALDCLKNAKTDKERKKCLKD 820
V YL V +N+++ KK+C E + K + AL LK K K K+
Sbjct: 74 YVLQYLSHVDITKNKQDSQLKKDCLEFIQRFNIPKPIIVTALYNLKGIKPTK------KE 127
Query: 821 LPKDLQK 827
+ K LQK
Sbjct: 128 VAKQLQK 134
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 27.3 bits (59), Expect = 3.9
Identities = 23/73 (31%), Positives = 36/73 (48%), Gaps = 11/73 (15%)
Query: 710 KLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAY 769
++LT K E KE + YL + + E+EK++ + +L K+LEE K +
Sbjct: 38 EILTLTFTKKATAEMKERILDYLKILQKENLESEKEKSQNIL-----KELEE-----KYH 87
Query: 770 LDCVSRARNEKEK 782
LD S RN +K
Sbjct: 88 LD-PSLVRNNAQK 99
Score = 27.3 bits (59), Expect = 3.9
Identities = 15/56 (26%), Positives = 26/56 (45%)
Query: 441 FYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKD 496
F + G N E L L KK +MK+ + Y ++ E E+ K +++K+
Sbjct: 26 FLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQKENLESEKEKSQNILKE 81
Score = 26.9 bits (58), Expect = 5.1
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 933 KLLTLE-SKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALD 987
++LTL +KK E K+ + YL + + E+EK++ + +L K+L E+ LD
Sbjct: 38 EILTLTFTKKATAEMKERILDYLKILQKENLESEKEKSQNIL----KELEEKYHLD 89
>ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 623
Score = 27.3 bits (59), Expect = 3.9
Identities = 34/158 (21%), Positives = 64/158 (39%), Gaps = 14/158 (8%)
Query: 531 LINDPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCL 590
+IN P+I +F K + K+++ +K +N + K KE + RL +
Sbjct: 109 IINTPKILTEFGKISLIFKKVKNHKKIQENLQKLLSLENLKKEGVKENVARLLLEIFFPT 168
Query: 591 KNAKTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSKARN--EKEKQECEKLLTPEAR 648
+ D E N KN P ++ Y + + +N K+ Q K+ P
Sbjct: 169 PHFVKDFETN---KNFPSQ-------HLNALKYIEMLFYMKNLERKKLQFNAKIACPNNS 218
Query: 649 KKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAK 686
++L+ + K +++ +K++ DL S I K
Sbjct: 219 ERLKAFIASL--PFKLTRDQQNAIKEIQSDLTSPIACK 254
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 27.3 bits (59), Expect = 3.9
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 982 EQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESLKAYKDCVSKARNEKEKKECEKL 1041
E Q ++ KN K + +K++ K QK+ +K +LK K+ SK + +KEK K
Sbjct: 506 EFQTIEIEKNVKLTDKIQTLLKNVQK--QKESGSKNALKELKNLHSKYKLQKEKN--PKW 561
Query: 1042 LTPEAKKLLEEAKKSVK 1058
L + K + A+ ++
Sbjct: 562 LLDDYVKFMRFAQNKIE 578
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 27.3 bits (59), Expect = 3.9
Identities = 34/162 (20%), Positives = 69/162 (41%), Gaps = 31/162 (19%)
Query: 792 EAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEK 851
+ +++L++ L+ + + +++K LK L +++ +K L KE+ ++ E +
Sbjct: 14 DTREVLKKIRLELKQVQEILRKKKSVLKGLKQEICQKKLEKENFRS--------NKETQN 65
Query: 852 KECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEXAKES 911
E E ++ P+A LEE E K+ + ++ ++L E
Sbjct: 66 TE-EDVIFPKA---LEEV----------------EVYAKDNQVIMAKPCKRLFNEGLYLQ 105
Query: 912 VKAYLDCVSQAKNEAEKKECEKLLTLESKKKLEEAKKSVKAY 953
++ L KN KK+ E L K +L + K +K Y
Sbjct: 106 YRSVLRENRLLKNHLSKKDFENSLL---KIELRDLHKEIKLY 144
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 27.3 bits (59), Expect = 3.9
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 15/118 (12%)
Query: 1375 EARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCL 1434
E K L E+Q+ + A ++ LKN D A +K + LS EK+ +R A A L
Sbjct: 20 EFLKTLQTEVQEFENAYQNNLKNLDAAKFANTLKHYENLS--EKI-----SRAMAYAQLL 72
Query: 1435 AMAKTDEEK------RKCQNLYSDLI-QEIQNKRTQNKQNQLSKTERLHQASECLDNL 1485
T E K C N+ L+ EI+ K K+ QL+ ++ + L+NL
Sbjct: 73 FAKNTKEAKFYSQCEMACANIQQHLLFFEIEFKNLDAKK-QLAFIKKCKDHAFYLNNL 129
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 27.3 bits (59), Expect = 3.9
Identities = 23/91 (25%), Positives = 42/91 (45%), Gaps = 9/91 (9%)
Query: 938 ESKKKLEEAKKSVKAYLDCVSQAKTEAEK------KECEKLLTPEAKKLLEQQALDCLKN 991
E K L+ AKK + + ++ KT+ E+ + EK+ K LE+ + L+N
Sbjct: 482 EQAKNLKIAKKKCEEIIKYANEKKTQVEEAFLKVAEFLEKVEKLHEKNKLEELDFEELEN 541
Query: 992 AKTEADKKRCVKDLPKDLQKKVLAKESLKAY 1022
E D VK+L D + +++++Y
Sbjct: 542 LSAEIDN---VKELFDDKRFNSYFMDAIQSY 569
Score = 26.2 bits (56), Expect = 8.6
Identities = 23/90 (25%), Positives = 39/90 (42%), Gaps = 5/90 (5%)
Query: 966 KKECEKLLTPEAK---KLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESLKAY 1022
K+ CEK+ + K L+ + KN K KK+C + + +KK +E+
Sbjct: 458 KEVCEKIDKSKPKPPINLIYPTQSEQAKNLKIA--KKKCEEIIKYANEKKTQVEEAFLKV 515
Query: 1023 KDCVSKARNEKEKKECEKLLTPEAKKLLEE 1052
+ + K EK + E+L E + L E
Sbjct: 516 AEFLEKVEKLHEKNKLEELDFEELENLSAE 545
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 26.9 bits (58), Expect = 5.1
Identities = 24/106 (22%), Positives = 49/106 (45%), Gaps = 9/106 (8%)
Query: 1447 QNLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSER 1506
QN +L+ +QNK ++ Q + + L ++ L++L+D + + + ++ L++
Sbjct: 290 QNHTPNLVALLQNKFKESVQINTNNEKELEKSMLLLNSLEDRDNPKRVIFSVDKLNEGWD 349
Query: 1507 AL----ILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFK 1548
L I+ +K +A++ D I A+ YP DFK
Sbjct: 350 VLNLFDIVRLKNKANQKDTI-----KDAQLIGRGARYYPFSYNDFK 390
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 26.9 bits (58), Expect = 5.1
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 1570 NPIYASIEPDIAKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKAENNKI 1629
N I+ + + E E ++D E K+AKAL +K K +E + ++
Sbjct: 581 NKIHNITPKTVTRALEEELKLRDD--EIKIAKAL---------KKDKMPKSEREKIIKEL 629
Query: 1630 DKDVAETAKNIS-EIALKNKKE 1650
DK + E AKN+ E A++ + E
Sbjct: 630 DKKMRERAKNLDFEEAMRLRDE 651
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 26.9 bits (58), Expect = 5.1
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Query: 686 KESLKAYKDCVSQAKTEAEKKECE------KLLTPEAKKLLEEEAKESVKAYLDCVSQAK 739
K +LK + + S + E KE + KL T ++ E+E KE+V L
Sbjct: 474 KIALKHHLENKSAPEETKEVKEFKFPPLKPKLTTETTAEMQEKETKEAVGKALQTKENDT 533
Query: 740 TEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSRARNEKEKKECEKL 788
E ++ E ++ + K+ ++ + + + + ++E E K E L
Sbjct: 534 KEVQENETKETKEAQPKEAPTALQEFMANHSNLIEEIKSEFEIKSVELL 582
Score = 26.9 bits (58), Expect = 5.1
Identities = 59/256 (23%), Positives = 97/256 (37%), Gaps = 59/256 (23%)
Query: 90 FKKARKLVDNKKPFTQQKNLDEETQELNEEDDQE------NNEYQEETQTDLID--DETS 141
FK+A KL K LD+ EL + + N QE T+ I+ ++
Sbjct: 331 FKEALKL----------KALDDAIVELEQTPFNQSPSISYNAPKQEPKSTERIEGREKLE 380
Query: 142 KKTQQHSPQD--LSNEEATEANHFENLLKESKE---SSDHHLDNPTETQTNF-DGDKSEE 195
K+ + +PQ LS ++ F NL K+ + ++ L E F D D +
Sbjct: 381 KRERIETPQTPMLSAKDRI----FHNLFKQVQTLVYERNYELGAVFEKNIRFIDFDSQTK 436
Query: 196 T------QTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNE- 248
T T D E S+ D +F K + K + K+ EET+E+ E
Sbjct: 437 TLTWESLATDKDKELLRERFKIVKSIVDGVFGKGENIKIALKHHLENKSAPEETKEVKEF 496
Query: 249 -----------EDDQENNEYQ-----------EETQTDLIDDETSKKTQQHSPQDLSNE- 285
E E E + +E T + + +K+T++ P++
Sbjct: 497 KFPPLKPKLTTETTAEMQEKETKEAVGKALQTKENDTKEVQENETKETKEAQPKEAPTAL 556
Query: 286 EATEANHFENLLKESK 301
+ ANH NL++E K
Sbjct: 557 QEFMANH-SNLIEEIK 571
>ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [Helicobacter pylori J99]
Length = 255
Score = 26.9 bits (58), Expect = 5.1
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 266 IDDETSKKTQQHSPQDLSNEEATEANHFENL--LKESKESSDHHLDNPTETQTNFDGDKS 323
ID E +K +H + S+E EA EN+ ++E+K +SD + P + Q F+ +
Sbjct: 125 IDIEITKYLNEHGKEP-SDEHLAEALG-ENIEKIREAKTASDIYALVPIDEQ--FNAIEQ 180
Query: 324 EEITDDSNDQEIIKGSKK 341
+EIT +E+++ +K
Sbjct: 181 DEITQKIEAEELLEHIQK 198
>ref|NP_223039.1| putative [Helicobacter pylori J99]
Length = 186
Score = 26.9 bits (58), Expect = 5.1
Identities = 23/64 (35%), Positives = 30/64 (45%), Gaps = 4/64 (6%)
Query: 1253 NEKEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENILAK-ESLK 1311
N K+ K EKL KQ + ++ N+E K L N+ +E IL K E LK
Sbjct: 123 NRKDAKNFEKLSNIAEEIISKKQEESHHKEDSNDENHKDKLSNI---TEEMILKKQEELK 179
Query: 1312 AYKD 1315
A KD
Sbjct: 180 ARKD 183
>ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori J99]
Length = 742
Score = 26.9 bits (58), Expect = 5.1
Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 23/152 (15%)
Query: 1206 KDCLS--QARNEEERRACEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNEKEKKECEKL 1263
KD L +N + RA ++LLTPE R ++ V + + D E +K + L
Sbjct: 601 KDTLGFFSTKNAKYDRAVKELLTPELRSRIDAIVPFNALSLEDFERIVSVELDKLKALAL 660
Query: 1264 LTPEARKFLAKQVLNCLEKAGNE-----EERKACLKNLPKDLQENILAKESLKAYKDCLS 1318
KF K+V+ C+ + + E K + N K +IL +S K
Sbjct: 661 EQGVILKF-HKEVVKCIAQKSYQTTLGAREIKKIIHNEIKTQLSDILLLQSFK------- 712
Query: 1319 QARNEEERRACEKLLTPEARKLLEQEVKKSVK 1350
+ C+ E +L+ +E+K++ K
Sbjct: 713 --------KPCKIACLLEKNQLVLKEIKRAQK 736
>ref|NP_222743.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 690
Score = 26.9 bits (58), Expect = 5.1
Identities = 15/65 (23%), Positives = 26/65 (39%)
Query: 108 NLDEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFENLL 167
N + Q+L E D + + SKKT +SPQ + + ++N +
Sbjct: 431 NFSSQYQKLGEHYDSITAAISSLPDAQSLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQ 490
Query: 168 KESKE 172
S+E
Sbjct: 491 SRSQE 495
Score = 26.9 bits (58), Expect = 5.1
Identities = 15/65 (23%), Positives = 26/65 (39%)
Query: 238 NLDEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFENLL 297
N + Q+L E D + + SKKT +SPQ + + ++N +
Sbjct: 431 NFSSQYQKLGEHYDSITAAISSLPDAQSLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQ 490
Query: 298 KESKE 302
S+E
Sbjct: 491 SRSQE 495
>ref|NP_223991.1| NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [Helicobacter pylori J99]
Length = 273
Score = 26.6 bits (57), Expect = 6.6
Identities = 20/66 (30%), Positives = 33/66 (49%), Gaps = 7/66 (10%)
Query: 555 KDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKEL 614
KD A A++ G K A+E L+ ++C++N K D+ER + P+D E+
Sbjct: 27 KDFKATAFVRAKQEGVFSG-EKYALELLQMTGIECVQNIK-DKERFK-----PKDTLMEI 79
Query: 615 LADMSV 620
D S+
Sbjct: 80 RGDFSM 85
>ref|NP_223614.1| putative [Helicobacter pylori J99]
Length = 230
Score = 26.6 bits (57), Expect = 6.6
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 544 ELELQKELQEYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERN--- 600
EL +K +EY+DCI + + L+ L + + LK++A + + + DE+
Sbjct: 68 ELSQEKIQEEYRDCIDYDNKLLQLHYSLENL--QTLRELKEEADNNYQESLNDEKLQNNL 125
Query: 601 ---ECLKNIPQD 609
LKN P++
Sbjct: 126 REWRDLKNTPEE 137
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 26.6 bits (57), Expect = 6.6
Identities = 26/97 (26%), Positives = 45/97 (45%), Gaps = 13/97 (13%)
Query: 550 ELQEYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQD 609
++QE ++ K +K +A + + + IERLK D K D+E + D
Sbjct: 174 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDD----DKLDQEMAMMAQQQGMD 229
Query: 610 L---QKELLADMSVKAYKDCVSKARNEKEKQECEKLL 643
L ++ L+A+ K Y+D + KE E ++LL
Sbjct: 230 LDHFKQMLMAEGHYKLYRDQL------KEHLEMQELL 260
>ref|NP_223290.1| putative [Helicobacter pylori J99]
Length = 683
Score = 26.6 bits (57), Expect = 6.6
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 17/75 (22%)
Query: 1148 KDLPKDLQKKVLAK-----------ESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLE 1196
KDLPK+ + + L K +SVK D A N KE L + LLE
Sbjct: 555 KDLPKEYRARELHKTLDDNLTNHNLQSVKLPNDQRRMAGNAKE------LASVVIDYLLE 608
Query: 1197 EAKESLKAYKDCLSQ 1211
A+E+ ++Y D SQ
Sbjct: 609 NAREAFESYTDDESQ 623
Score = 26.2 bits (56), Expect = 8.6
Identities = 31/120 (25%), Positives = 52/120 (42%), Gaps = 26/120 (21%)
Query: 965 EKKECEKLLTPEAKKLLEQQALDCLKNAKTE-----------ADKKRCVKDLPK----DL 1009
E++ CEKLL Q ++ +N KT D ++ ++ L + D
Sbjct: 31 EEENCEKLL---------QDIVNISQNKKTHFMGSITYILHLIDDEKSLRQLQEFVIIDG 81
Query: 1010 QKKVLAKESLKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKT 1069
Q+++ L K +K +NE KKE + LL ++L + KS K D V Q ++
Sbjct: 82 QQRITTIMLL--LKAIETKIQNEGIKKEIDGLLNLSGQRLRLKPIKSDKEAFDLVMQNRS 139
>ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Helicobacter pylori J99]
Length = 621
Score = 26.6 bits (57), Expect = 6.6
Identities = 25/90 (27%), Positives = 42/90 (45%), Gaps = 7/90 (7%)
Query: 737 QAKTEAEKKECEKLLTP--EAKKKLEE-AKKSVKAYLDCVSRAR----NEKEKKECEKLL 789
QA E K+ E +LTP E K+L E + + +D VS N ++ + L
Sbjct: 468 QAIQENLKRLKECVLTPSKEVLKRLNELGENPINDKMDGVSLLARDSFNLEKMRSFFSFL 527
Query: 790 TPEAKKLLEQQALDCLKNAKTDKERKKCLK 819
P +++LEQ ++C N +K+ + K
Sbjct: 528 VPLNERVLEQIKIECKYNIYIEKQHENIAK 557
>ref|NP_222890.1| putative [Helicobacter pylori J99]
Length = 236
Score = 26.6 bits (57), Expect = 6.6
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 544 ELELQKELQEYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKN 592
E L+ L+E D +KN + + + + +E LK++A D KN
Sbjct: 164 EKNLKDNLEEMSDEVKNKGSIDNAKESFNKATDKGVEALKEKAKDLPKN 212
>ref|NP_224212.1| putative [Helicobacter pylori J99]
Length = 253
Score = 26.2 bits (56), Expect = 8.6
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 251 DQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDN 310
D+ Y ++T+T LI+ K + S +++ +EE E E +K + + L
Sbjct: 93 DKLKVNYNKKTETTLIEQNMLSKILERSLEEMDDEEVKEMCD-ELSIKNTDNLNRQALSA 151
Query: 311 PTETQTNFDGDKSEEI 326
T T G KS ++
Sbjct: 152 ATLTLFKMGGFKSYQL 167
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 26.2 bits (56), Expect = 8.6
Identities = 78/372 (20%), Positives = 138/372 (36%), Gaps = 76/372 (20%)
Query: 902 KLLEEXAKESVKAYLDCVSQAKNEAEKKECEKL-----LTLESKKKLEEAKKSVKAYLDC 956
+ +E K ++ D + + KNE K + L L + SKK+LE D
Sbjct: 376 RTIESQGKNAIYDKQDLLFKIKNEYFKCSVKGLKSAGFLAMFSKKELEN---------DE 426
Query: 957 VSQAKTEAEKKECEKL-LTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLA 1015
+ K EK++ + L + L L +K A K+ D K L+ K +
Sbjct: 427 SNDDKDNKEKEQNAQFNLKIDDVLSLNDLVLSTIKRNAPSAYKEA---DFVKLLENKGIG 483
Query: 1016 KESLKA-YKDCVSKARNEKEKKECEKLLTP--EAKKLLEEAKKSVKAYLDCVSQAKTEAE 1072
+ S A Y + K ++ + ++TP + K+++E + + + +D
Sbjct: 484 RPSTYASYLPTLVKREYISISQDKKHIITPTHKGKRVVEVFENAYQFIIDLT-------- 535
Query: 1073 KKECEKLLTPEARKLLEEAKESVKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEQQVLD 1132
T + ++L+E E+ +Y D +S ++ K E + E K E Q+
Sbjct: 536 -------YTKQMEEVLDEIVENKSSYVDFISNLNSKCPKIEKLERNDDEIKPSSEGQI-- 586
Query: 1133 CLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAK 1192
++++ +DLQ L+ +N KE K
Sbjct: 587 ------------TYIENILRDLQ------------LNLSEEFKNYKEDNRVAKAFLDRYI 622
Query: 1193 KLLEEAKESLKAYKDCLSQARNEEERRACEK------LLTPEARKLLEQEVKKSIKAYLD 1246
K E K++ K S + N+E R A K +L + L + K S+K D
Sbjct: 623 KEHEFFKKNNKK----ASSSNNDENRPATPKQISFAEILAKKHNVKLPKGFKYSMKVCGD 678
Query: 1247 CVSRARNEKEKK 1258
+ NE KK
Sbjct: 679 FI----NEYHKK 686
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 26.2 bits (56), Expect = 8.6
Identities = 82/408 (20%), Positives = 149/408 (36%), Gaps = 78/408 (19%)
Query: 1102 VSKARNEKEKKECE--KLLTPEAKKLLEQQVLDCLKNAKTEADKKRCVKDLPKDLQKKVL 1159
+++ NE EK E E +++ E KK E+Q L N E + K L ++ + +
Sbjct: 114 IAELENEHEKYEREFNRIVEEEVKKQKEKQ---SLSNRAKEGIRNVGNKMLGRNKSDEEI 170
Query: 1160 AKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERR 1219
K + + A+NE EK KL+ + K K +N + R
Sbjct: 171 EKRAERI-------AKNELEKD----------TKLVSSHDQYEKIKKSGSLNTKNLDPRI 213
Query: 1220 ACEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQVLNC 1279
L + L Y V + N K+ E + TP +A +
Sbjct: 214 QANSLQELNQKLLQFVGADGKYMPYTKAVRISLNNPNLKDLEVIDTPGVNDPIASR---- 269
Query: 1280 LEKAGNEEERKACLKNL----------------PKDLQENILAKESLKAYKDCLSQARN- 1322
EE KA LK+ L + + KE L+ SQA +
Sbjct: 270 ------EERTKALLKDCDVVFIVSPSGQFLTDSDMSLFDRVSHKEGLQEIYFVASQADSA 323
Query: 1323 ----EEERRACEKLLT--PEARKLLEQEVKKSVKAYLDCVSRARNEKEK-KECEKLLTPE 1375
E ++ L T A+K L ++ + A ++ R EK K+ +LT
Sbjct: 324 VGSMSEVEKSNHHLPTAFENAQKSLSSQLNNIMGALIEKYPNQREVFEKAKQNGVILTSG 383
Query: 1376 ARKFLAKELQ--------QKDKAIKDCLKN----------ADPNDRAAIMKCLDGLSDEE 1417
+ K+ + QK + + L+N +D + + + ++ + EE
Sbjct: 384 VCFSMHKDFENQASWERNQKTEEYHNALRNLRDSYPDAFSSDDKSKESSLFLINMGAIEE 443
Query: 1418 KLKYLQEAREKAVADCLAMAKTDEEKRKCQNLYSDLIQEIQNKRTQNK 1465
+LK + +EK ++ L + + + NL+S + Q +Q+ + +
Sbjct: 444 RLKKAAQEKEKIMSQKL----QNYAESQANNLHSFITQLLQDLEEEKR 487
>ref|NP_223445.1| putative HEAVY-METAL CATION-TRANSPORTING P-TYPE ATPASE [Helicobacter
pylori J99]
Length = 686
Score = 26.2 bits (56), Expect = 8.6
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 1855 SNQILGQLMNIPPSF-YKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEII 1905
S + L L+++ P+ Y +GD++ + +D+ + + VK+ K VD ++
Sbjct: 176 SKKSLKALVDVAPNLAYLKKGDTLVSVAPEDLRINDIVVVKVGEKVPVDGVV 227
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 26.2 bits (56), Expect = 8.6
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 25/89 (28%)
Query: 1821 KLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKIL 1880
+L+G G ++ N LG+ + + MSNQ+LGQ++N KI+
Sbjct: 2350 ELLGAISGMGQKV--LNDLLGEGVVNKI-----MSNQVLGQMIN-------------KII 2389
Query: 1881 TMDDIDFSGVYDV---KITNKSVVDEIIK 1906
D F GVY I KS+ DE+ K
Sbjct: 2390 A--DKGFGGVYHQGLGSILPKSLQDELKK 2416
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.307 0.126 0.335
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,071,212
Number of Sequences: 1491
Number of extensions: 107041
Number of successful extensions: 1450
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 429
length of query: 1927
length of database: 494,079
effective HSP length: 92
effective length of query: 1835
effective length of database: 356,907
effective search space: 654924345
effective search space used: 654924345
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.2 bits)