BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645161|ref|NP_207331.1| cag pathogenicity island
protein (cag14) [Helicobacter pylori 26695]
(126 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223201.1| cag island protein [Helicobacter pylori J99] 240 1e-65
ref|NP_222922.1| CDP-DIACYLGLYCEROL SYNTHASE [Helicobacter ... 28 0.10
ref|NP_223131.1| DIHYDROOROTATE DEHYDROGENASE [Helicobacter... 27 0.13
ref|NP_224000.1| putative histidine kinase sensor protein [... 26 0.39
ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori... 26 0.39
ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE P... 23 1.9
ref|NP_223694.1| HIT FAMILY PROTEIN [Helicobacter pylori J99] 23 2.5
ref|NP_223613.1| GLYCEROL-3-PHOSPHATE DEHYDROGENASE (NAD+) ... 23 2.5
ref|NP_223498.1| putative [Helicobacter pylori J99] 23 2.5
ref|NP_223446.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_223421.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_223265.1| putative secretion/efflux abc transporter,... 22 7.4
ref|NP_223035.1| putative [Helicobacter pylori J99] 22 7.4
ref|NP_222975.1| putative [Helicobacter pylori J99] 22 7.4
ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 21 9.6
ref|NP_223787.1| putative [Helicobacter pylori J99] 21 9.6
ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 21 9.6
ref|NP_223423.1| MOLYBDOPTERIN COFACTOR BIOSYNTHETIC PROTEI... 21 9.6
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 21 9.6
>ref|NP_223201.1| cag island protein [Helicobacter pylori J99]
Length = 126
Score = 240 bits (612), Expect = 1e-65
Identities = 122/126 (96%), Positives = 123/126 (96%)
Query: 1 MLPTKTRIRDPNKQELTQPKIKGLIMGKILASLLGGGTNLFTGLSSDLFSMILNFLFFLM 60
MLPTKTRIRDPNKQELTQPKIKGL MGKILASLLGGGTNLFTGLSSDLFSMILNFLFFLM
Sbjct: 1 MLPTKTRIRDPNKQELTQPKIKGLSMGKILASLLGGGTNLFTGLSSDLFSMILNFLFFLM 60
Query: 61 LMMGLNEILGKKFNLPMDNIKNFMAEVLKNGFDSIKNMGSALVGNGFGSNKSDKTTNKMS 120
LMMGLNE LGKKFNLPMDNIKNFMAEVLKNGFDSIKNMGSALVGNGFGS+KSDKTTNKMS
Sbjct: 61 LMMGLNEALGKKFNLPMDNIKNFMAEVLKNGFDSIKNMGSALVGNGFGSSKSDKTTNKMS 120
Query: 121 VSQVRL 126
V QVRL
Sbjct: 121 VPQVRL 126
>ref|NP_222922.1| CDP-DIACYLGLYCEROL SYNTHASE [Helicobacter pylori J99]
Length = 266
Score = 27.7 bits (60), Expect = 0.10
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 21 IKGLIMGKILASLLGGGTNLFTGLSSDLFSMILNFLFFLMLMMG 64
++G ++G +LAS+LG + L +++ +FL LM + G
Sbjct: 164 LEGALIGVVLASVLGSFVGMGKLSGGFLMALLFSFLIALMAVFG 207
>ref|NP_223131.1| DIHYDROOROTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 351
Score = 27.3 bits (59), Expect = 0.13
Identities = 19/52 (36%), Positives = 24/52 (45%), Gaps = 9/52 (17%)
Query: 66 NEILGKKFNLPMDNIKNFMAEVLKNGFDSIKNMGSALVGNGFGSNKSDKTTN 117
NEILG F P+ L GFD +M AL+ GFG ++ TN
Sbjct: 52 NEILGLNFPNPLG---------LAAGFDKNASMLRALIAFGFGYLEAGTLTN 94
>ref|NP_224000.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 344
Score = 25.8 bits (55), Expect = 0.39
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 50 SMILNFLFFLMLMMGLNEILGKKFNLPMDNIKNFMAEVLKNGFDSIKNMGSALV 103
+M+L F+ + ++G++ LG+ F P+ N + LKN + SALV
Sbjct: 104 NMVLVFVVAFLCVIGVSVFLGRLFLKPIRNEIIRIDHFLKNTTHELNTPMSALV 157
>ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori J99]
Length = 519
Score = 25.8 bits (55), Expect = 0.39
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 57 FFLMLMMGLNEILGKKFNLP--------MDNIKNFMAEVLK 89
FFL ++ LN IL K N P +D++K + +LK
Sbjct: 104 FFLNALLDLNTILAKHLNAPVVAVAQTSLDHLKAMHSHILK 144
>ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE PYROPHOSPHATASE
[Helicobacter pylori J99]
Length = 484
Score = 23.5 bits (49), Expect = 1.9
Identities = 8/26 (30%), Positives = 18/26 (68%)
Query: 65 LNEILGKKFNLPMDNIKNFMAEVLKN 90
L+++L K+F+ P+D++ + + KN
Sbjct: 207 LSKVLMKRFDYPIDSLHGYEIDAHKN 232
>ref|NP_223694.1| HIT FAMILY PROTEIN [Helicobacter pylori J99]
Length = 104
Score = 23.1 bits (48), Expect = 2.5
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 41 FTGLSSDLFSMILNFLFFLMLMMGLNEILGKKFNLPMDNIKNFMAEVL 88
F G++ +L + + +F+F ++ +G+ E K + L + KN EV+
Sbjct: 48 FNGITPELMAQMTSFIFEVVEKLGIKE---KGYKLLTNVGKNAGQEVM 92
>ref|NP_223613.1| GLYCEROL-3-PHOSPHATE DEHYDROGENASE (NAD+) [Helicobacter pylori J99]
Length = 312
Score = 23.1 bits (48), Expect = 2.5
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 22 KGLIMGKILASLLGGGTNLFTGLS--SDLFSMILNFLFFLMLMMGLNEILGKKFNLPMDN 79
+GL+ + + GG T F GLS DLF + N + +G LG N P++
Sbjct: 203 RGLVEMQRFGAFFGGKTETFLGLSGAGDLF-LTANSILSRNYRVG----LGLAQNKPLEV 257
Query: 80 IKNFMAEV 87
+ + EV
Sbjct: 258 VLEELGEV 265
>ref|NP_223498.1| putative [Helicobacter pylori J99]
Length = 245
Score = 23.1 bits (48), Expect = 2.5
Identities = 13/40 (32%), Positives = 20/40 (49%)
Query: 62 MMGLNEILGKKFNLPMDNIKNFMAEVLKNGFDSIKNMGSA 101
M L EIL K N P+ K ++E L + S + + +A
Sbjct: 100 MKKLKEILSAKDNTPLKEYKELLSEKLIHAKSSQEFLNTA 139
>ref|NP_223446.1| putative [Helicobacter pylori J99]
Length = 506
Score = 22.7 bits (47), Expect = 3.3
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 20 KIKGLIMGKILASLLGGGTN--LFTGLSSDLFSMILNFLFFLMLMMGLNEIL 69
++KG + K A + G + + G SMI+N + +++ + LNEIL
Sbjct: 203 EVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINRMRYILPPLSLNEIL 254
>ref|NP_223421.1| putative [Helicobacter pylori J99]
Length = 286
Score = 22.7 bits (47), Expect = 3.3
Identities = 11/52 (21%), Positives = 24/52 (46%)
Query: 59 LMLMMGLNEILGKKFNLPMDNIKNFMAEVLKNGFDSIKNMGSALVGNGFGSN 110
L + +G+ +I + + N +N + ++ NG D +G G G++
Sbjct: 194 LRITIGIKDIDMQDLRKQISNARNLLNQLNTNGIDGDSALGVIAGCGGLGAS 245
>ref|NP_223265.1| putative secretion/efflux abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 589
Score = 21.6 bits (44), Expect = 7.4
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 40 LFTGLSSDLFSMILNFLFFLMLMMGLNEILG 70
+FT + L + + LFFLM+ + L++++G
Sbjct: 255 IFTIYADVLITTLSIALFFLMVFIILSKLIG 285
>ref|NP_223035.1| putative [Helicobacter pylori J99]
Length = 266
Score = 21.6 bits (44), Expect = 7.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 64 GLNEILGKKFNLPMDNIKNFMAEVLKN 90
G NE+L K + NI+NF+ +LK+
Sbjct: 187 GTNELLEKGQAQGIFNIQNFINTLLKD 213
>ref|NP_222975.1| putative [Helicobacter pylori J99]
Length = 437
Score = 21.6 bits (44), Expect = 7.4
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 70 GKKFNLPMDNIKNFMAEVLKNGFDSIKNMGSALVGNGFG 108
GK+ ++PMD I ++ NG + +G + N +G
Sbjct: 162 GKEISIPMDLILKEAEKLANNGTKELMLLGQNV--NNYG 198
>ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 624
Score = 21.2 bits (43), Expect = 9.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 69 LGKKFNLPMDNIKNFMAEVLKNGFDSIKNMGSALV 103
LG L D N E+LKN +KN+ A++
Sbjct: 19 LGDILELLTDYHANGSYEILKNNVTLLKNVDFAIM 53
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 21.2 bits (43), Expect = 9.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 69 LGKKFNLPMDNIKNFMAEVLKNGFDSIKNMGSALV 103
LGKK N ++ I++ + K IKN S V
Sbjct: 112 LGKKTNENLEKIESKKESINKENEKKIKNEASLQV 146
>ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 358
Score = 21.2 bits (43), Expect = 9.6
Identities = 9/22 (40%), Positives = 13/22 (58%)
Query: 4 TKTRIRDPNKQELTQPKIKGLI 25
TK ++D KQ+ P+IK I
Sbjct: 219 TKQEVKDEYKQQEGNPEIKAKI 240
>ref|NP_223423.1| MOLYBDOPTERIN COFACTOR BIOSYNTHETIC PROTEIN [Helicobacter pylori
J99]
Length = 321
Score = 21.2 bits (43), Expect = 9.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 75 LPMDNIKNFMAEVLKNGFDSIKNMG 99
LP+DN+ F+ + G I+ G
Sbjct: 43 LPLDNVLEFLKIAIDEGVKKIRITG 67
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 21.2 bits (43), Expect = 9.6
Identities = 18/59 (30%), Positives = 25/59 (41%), Gaps = 10/59 (16%)
Query: 66 NEILGKKFNLPMDNIKNFMAEVLKNGFDSIKNMGSALVGNGFGSNKSDKTTNKMSVSQV 124
N+ILG+ N+P KN DSIK + + F K TNK V ++
Sbjct: 1748 NQILGQLMNIP--------PSFYKNEGDSIKIL--TMDDIDFSGVYDVKITNKSVVDEI 1796
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.139 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,785
Number of Sequences: 1491
Number of extensions: 5960
Number of successful extensions: 28
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 19
length of query: 126
length of database: 494,079
effective HSP length: 68
effective length of query: 58
effective length of database: 392,691
effective search space: 22776078
effective search space used: 22776078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)