BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644685|ref|NP_206855.1| adenine/cytosine DNA
methyltransferase [Helicobacter pylori 26695]
(823 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223153.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 82 4e-17
ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 64 2e-11
ref|NP_223767.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 48 9e-07
ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 44 2e-05
ref|NP_223645.1| putative [Helicobacter pylori J99] 41 1e-04
ref|NP_223564.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 40 2e-04
ref|NP_223405.1| putative [Helicobacter pylori J99] 36 0.003
ref|NP_223331.1| putative [Helicobacter pylori J99] 31 0.11
ref|NP_224044.1| putative [Helicobacter pylori J99] 30 0.25
ref|NP_223659.1| putative [Helicobacter pylori J99] 28 0.72
ref|NP_222801.1| putative [Helicobacter pylori J99] 28 0.72
ref|NP_223618.1| putative [Helicobacter pylori J99] 27 1.6
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 27 2.1
ref|NP_223656.1| putative [Helicobacter pylori J99] 27 2.1
ref|NP_223686.1| putative [Helicobacter pylori J99] 27 2.7
ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 27 2.7
ref|NP_224088.1| putative [Helicobacter pylori J99] 26 3.6
ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR ... 26 3.6
ref|NP_223191.1| cag island protein, DNA transfer protein [... 26 3.6
ref|NP_222768.1| putative TYPE II restriction enzyme [Helic... 26 3.6
ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 26 4.7
ref|NP_223874.1| putative [Helicobacter pylori J99] 26 4.7
ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacte... 26 4.7
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 26 4.7
ref|NP_224097.1| putative [Helicobacter pylori J99] 25 6.1
ref|NP_223990.1| putative [Helicobacter pylori J99] 25 6.1
ref|NP_223522.1| FLAGELLAR HOOK PROTEIN [Helicobacter pylor... 25 6.1
ref|NP_223076.1| putative RIBOSOMAL PROTEIN L11 METHYLTRANS... 25 6.1
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 25 6.1
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 25 7.9
ref|NP_222725.1| 3-deoxy-D-manno-octulosonic acid 8-phospha... 25 7.9
>ref|NP_223153.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 351
Score = 82.4 bits (202), Expect = 4e-17
Identities = 97/390 (24%), Positives = 158/390 (39%), Gaps = 62/390 (15%)
Query: 12 LFSGAGVGCYGLLEEG-FECVATNEILEKRLNIQRINRKCKLDESYISGDIKKPETKEKI 70
+F GAG YG FE + N+I + + + N K ET+ +
Sbjct: 7 IFCGAGGLSYGFSTHPYFELIWANDIDKDAILSYQANHK---------------ETQTIL 51
Query: 71 LKQIEFYSKKFGNDRVDLVVATPPCQGMSVANHKKKNDEIKRNSLVVESIDLIKQIKPRF 130
+ + +D+++ PPCQ S K+K DE + +L E + ++ +KP+
Sbjct: 52 CDIAQLHCHNLPRVPIDILLGGPPCQSYSTLG-KRKMDE--KANLFKEYLRILDLVKPKI 108
Query: 131 FILENVPSFYKTGCIDKNDNLLEIGSMIEQNLSGDYMLYDEVINFKNFGANSSRTRTLVI 190
F+ ENV + K I + ++ Y+L ++N ++G R R +++
Sbjct: 109 FVFENVVGLMS---MQKGQLFQRICNAFKER---GYILEHAILNALDYGVPQVRERVILV 162
Query: 191 GVCKEFKDFISALEFFPD-FKQEKTLKEVIGSLKPLAWGEYDNTDFYHSFRTYPKHMQEW 249
G K FK +FP K +LK+ +G L P+ GE N D + E+
Sbjct: 163 GALKSFKQKF----YFPKPIKTHFSLKDALGDLPPIQSGE--NGDALGYLKNADNVFLEF 216
Query: 250 I---KDLKEGQSAFENTELNKKPHRIVG--SKIVLNVS---KNG--DKYKRQKYHSVAPC 299
+ K+L E S N +L K + SK L S K+G + Y + + AP
Sbjct: 217 VRNSKELSEHSSPKNNEKLIKIMQTLKDGQSKDDLPESLRPKSGYINTYAKMWWEKPAPT 276
Query: 300 IHTRNDQMASQNTIHPKDDRVFSIRELMLLMNIPSRFKWLDLELQELNALNQQEKEKISK 359
I +S IHP+D R SIRE L + P +K+ NA
Sbjct: 277 ITRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYG----SANAK---------- 322
Query: 360 QNEMNIRQSIGEAVPTIIFKQIAIKIKNFM 389
R IG AVP ++ +A + +F+
Sbjct: 323 ------RLQIGNAVPPLLSAALAHAVFDFL 346
>ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 545
Score = 63.5 bits (153), Expect = 2e-11
Identities = 66/276 (23%), Positives = 121/276 (42%), Gaps = 27/276 (9%)
Query: 418 ILENQNKIARASLVSLAEMSNSKRIEKSAYFTNPFIINEIAKLLPSFKQESVTIIEPSAG 477
+LEN + + E+SN+ R + Y+T I+ ++ L F +P+ G
Sbjct: 84 MLENSSDLENLGSYYEKELSNTTRNLEGIYYTPNRIVEQLFTLPKDFDTTQAIFCDPAVG 143
Query: 478 CGNFLSALFKKYTSVKKVY---LKCIDIDKNSLEILEILYKDCIPNNFEMELICKDFLAY 534
GNF+ K V+ +Y + I E DC PN ++ KDFL+
Sbjct: 144 SGNFVMHALKLGFKVENIYGYDTDAFAVALTKKRIKERYRLDC-PN-----IMQKDFLSL 197
Query: 535 E-CGKVDLIVGNPPFGKTH-----ERFK-DYSLRLT-HLAGIFLEKS---LKLANFTAMV 583
+ + D I NPP+GK + E FK ++L + A +F S LK + ++
Sbjct: 198 KHAPQFDCIFTNPPWGKKYNQNQKENFKQQFNLHQSLDSASLFFMASLNCLKENAYLGLL 257
Query: 584 MPKNLLNTKEYAETRTKLEKKGVGAILDFGELGFKGVLVETIAIVTQK--SKEVLARSLP 641
+P++ LN +++ R K + +++DF + FK ++ + + + +K +K+
Sbjct: 258 LPESCLNIDAFSKMREMALKFQMRSLIDF-DKPFKNLMTKAVGLALKKTHNKDQKISCFY 316
Query: 642 LNLSIKQKPSYIFDKQLPYWVIY----RNAFFDKVF 673
N K+ PS F+ + I+ +N D +F
Sbjct: 317 QNSEFKRSPSSFFNNPKKIFNIHCSHQKNKILDHLF 352
>ref|NP_223767.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 321
Score = 48.1 bits (113), Expect = 9e-07
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 25/191 (13%)
Query: 7 LTYISLFSGAGVGCYGLLEEGFECVATNEILEKRLNIQRINRKCKLDESYISGDIKKPET 66
LT++ SG G G GL +CV EI + + + K +++ GD+ +
Sbjct: 4 LTFMDFCSGIGGGRLGLERCHLKCVGHAEINHEAIRTYELFFK----DTHNFGDLMRINP 59
Query: 67 KEKILKQIEFYSKKFGNDRVDLVVATPPCQGMSVANHKKKNDEIKRNSLVVESIDLIKQI 126
+ D++V+ PCQ S+ N K+K E +R +++ I ++K
Sbjct: 60 NDL--------------PNFDVLVSGFPCQAFSI-NGKRKGLEDERGTIIYGLIRILKVK 104
Query: 127 KPRFFILENVPSFYKTGCIDKNDNLLEIGSMIEQNLSGDYMLYDEVINFKNFGANSSRTR 186
+P+ F+LENV K + ++I+ Y + +++N +F R R
Sbjct: 105 QPKCFLLENVKGLIH----HKQQETFK--TIIKALQEAGYTTHYQILNSADFQLAQKRER 158
Query: 187 TLVIGVCKEFK 197
++G K+ K
Sbjct: 159 LYIVGFRKDLK 169
>ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 543
Score = 43.9 bits (102), Expect = 2e-05
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 433 LAEMSNSKRIEKSAYFTNPFIINEIAKLLPSFKQESVTIIEPSAGCGNFLSALFKKYTSV 492
L + +N+ + Y+T I + IAKLL + +SV I +PSAG G L AL +
Sbjct: 195 LKDYNNNSGGTYAEYYTPLSIASIIAKLLVNKPTQSVKIYDPSAGTGTLLMALAHQ-IGT 253
Query: 493 KKVYLKCIDIDKNSLEILE--ILYKD---CIPNNFEMELICKDFLAYE-CGKVDLIVGNP 546
L DI + SL +L+ ++ D + + E + + + + GK+D IV NP
Sbjct: 254 DSCTLYAQDISQKSLRMLKLNLILNDLTHSLRHAIEGNTLTNPYHSKDHKGKMDFIVSNP 313
Query: 547 PF 548
PF
Sbjct: 314 PF 315
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 40.8 bits (94), Expect = 1e-04
Identities = 57/265 (21%), Positives = 104/265 (38%), Gaps = 31/265 (11%)
Query: 429 SLVSLAEMSNSKRIEKSAYFTNPFIINEIAKLLPSF----KQESVTIIEPSAGCGNFLSA 484
+L++ E + + AY+T +I+ I + L I EPS G G F++
Sbjct: 507 ALLTKDEFRRAYLSARDAYYTPKLVIDSIYQGLDQLGFNNDNHPKEIFEPSLGTGKFIAH 566
Query: 485 LFKKYTSVKKVYLKCIDIDKNSLEILEILYKDCIPNNFEMELICKDFLAYECGKVDLIVG 544
S K ++D S + + LY + + N +E ++ Y+ + D VG
Sbjct: 567 A----PSDKNYRFIGTELDPISANLSKFLYPNQVIQNTALE----NYQFYQ--EYDAFVG 616
Query: 545 NPPFGKTHERF--KDYSLRLTHLAGIFLEKS---LKLANFTAMVMPKNLLNTKEYAETRT 599
NPP+G H+ + D L + FL K+ LK A V+ ++ K + R
Sbjct: 617 NPPYG-NHKIYSSNDKELSNESIHNYFLGKAIKELKDDGIGAFVVSSWFMDAKN-PKMRE 674
Query: 600 KLEKKGVGAILDFGELGFKGVLVETIAIVTQKSKEVLARSLPLNLSIKQKPSYIFDKQLP 659
+ K F G + ++ EV + + +++ + F K +P
Sbjct: 675 HIAKNAT----------FLGAIRLPNSVFKATGAEVTSDIVFFKKGVEKATNQSFTKAMP 724
Query: 660 YWVIYRNAFFDKVFHSMQFGLFEVF 684
Y+ N+ D ++Q F+ F
Sbjct: 725 YYDKILNSLDDDTLFALQNNRFDSF 749
>ref|NP_223564.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 381
Score = 40.0 bits (92), Expect = 2e-04
Identities = 82/372 (22%), Positives = 143/372 (38%), Gaps = 64/372 (17%)
Query: 452 FIINEIAKLLPSFKQESVTIIEPSAGCGNFLSALFKKYTSVKKVYLKCIDIDKNSLEILE 511
F I + K +++EPSAG G+FL L K +E
Sbjct: 17 FTPKNIVDFMLILKHNHGSVLEPSAGDGSFLKRLKKAVG-------------------IE 57
Query: 512 ILYKDCIPNNFEMELICKDFLAYEC-GKVDLIVGNPPFGK-------THERFKDYSL--R 561
I K C N +C DF Y + + I+GNPP+ K T E+ YSL
Sbjct: 58 IDPKICPKN-----ALCMDFFDYPLENQFNTIIGNPPYVKHKDIAPSTKEKL-HYSLFDE 111
Query: 562 LTHLAGIFLEKS---LKLANFTAMVMPKNLLNTKEYAETRTKLEKKGVGAILDFGELGFK 618
++L F+EK+ LK + P++ L + + + K+ G I F ELG +
Sbjct: 112 RSNLYLFFIEKAIKHLKPKGELIFITPRDFLKSTSSVKLNEWIYKE--GTITHFFELGDQ 169
Query: 619 GVLVETI--AIVTQKSKEVLARSLPLNLSIKQKPSYIFDKQLPYWVIYRNAFFDKVFHSM 676
+ + ++ + K +R L K ++ Y F KV
Sbjct: 170 KIFPNAMPNCVIFRFCKGDFSRITNDGLQFVCKKGILYFLNQSYTQKLSEVF--KVKVGA 227
Query: 677 QFGLFEVFRDRQITNSVLVKNGIRVIKSRNIDENGKIISIENYDSYI--QKEVLSPFKIA 734
G ++F++ N V + + K N+ E K++ + + Y+ K+ L KI
Sbjct: 228 VSGCDKIFKNETYGNLEFVTS---ITKRTNVLE--KMVFVNKPNDYLLQHKDSLMQRKIK 282
Query: 735 SFLDRD--DVYLTPNMTYKPRILKKEKGYVVN-----------GSVAILIPKNPISLSKK 781
F + + + +++ K RI K + N GS+ L P N +
Sbjct: 283 KFNENNWFEWGRMHHISPKKRIYVNAKTHQKNPFFIHQCPNYDGSILALFPYNQNLDLQN 342
Query: 782 QCDYISSVEFRD 793
CD ++++ +++
Sbjct: 343 LCDKLNAINWQE 354
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 36.2 bits (82), Expect = 0.003
Identities = 45/151 (29%), Positives = 67/151 (43%), Gaps = 9/151 (5%)
Query: 257 QSAFENTELN--KKPHRIVGSKIVLNVSKNGDKYKRQKYHSVAPCIHTRNDQMASQNTIH 314
Q AFEN + K ++ + LNV K QK SV TR + S T
Sbjct: 139 QVAFENLHQSTLSKMSQLSQEEKKLNVQALEVKSSIQKISSVIDEQKTRESTLKSLQTEQ 198
Query: 315 PKDDRVFSIRELMLLMNIPSRFKWLDLELQELNALNQQEKEKISKQNEMNI-RQSIGEAV 373
K + S+++ + N R L+ E Q LNAL ++ I KQN N R S+ ++
Sbjct: 199 NK--LILSMQKDYAIYN--QRLSLLEKERQNLNAL--LKRLNIIKQNRENEERVSLKKSS 252
Query: 374 PTIIFKQIAIKIKNFMSQTHLEPKEIIRLID 404
+ KQ+A +N + ++ PK I L D
Sbjct: 253 QALEVKQVASSYQNINTTSYNGPKTIAPLND 283
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 31.2 bits (69), Expect = 0.11
Identities = 96/440 (21%), Positives = 167/440 (37%), Gaps = 83/440 (18%)
Query: 98 MSVANHKKKNDEIKRNSLVVESIDLIKQIKPRFFILENVPSFYKTGCIDKNDNLLEIGSM 157
M + + K K + ++ +D K R LEN+ +F C +L
Sbjct: 72 MECYDEELKKKSFKNLKISIDHVDGTMNCKERLDKLENLNTFEPNIC-----KVLSNARC 126
Query: 158 IEQNLSGDYMLYDEVINFKNFGANSSRTRTLVIGVCKEFKDFISALEFFPDFKQEKTLKE 217
+ + + D D VI F A + V V ++ K+ P +E +K
Sbjct: 127 LSEGV--DVPALDSVIFFDGRSAMVDIIQA-VGRVMRKAKNKKRGYIILPIALRESEIKN 183
Query: 218 VIGSLKPLAWGEYDNTDFYHSFRTYPKHMQEWIKDLKEGQSAFENTELNKKPHRIVGSKI 277
+ ++K NT+F + ++ +K L+ S+ + + K+ +I GS
Sbjct: 184 LDEAVK--------NTNFQNIWKV--------LKALRSHDSSLVDEAIFKEKIKIFGSD- 226
Query: 278 VLNVSKNGDKYKRQKYHSVAPCIHTRNDQMASQNTIHPK---DDRVFSIRELMLLMNIPS 334
+ S D+ + QK + + ND +Q T+ D ++ +M +
Sbjct: 227 --DASNPDDEEELQKDKTE----QSSNDPKEAQKTLFDAILLQDLANAVYNVMPT-KLGD 279
Query: 335 RFKWLDLELQELN---ALNQQEKEKISKQNEM----------NIRQSIGEA------VPT 375
R W + + N LN++ KE K E+ NI QSI E +
Sbjct: 280 RNYWENFAKKTGNIARTLNERLKELFGKNPEIFDNFLTSLRGNIHQSIKEEEALDMIISH 339
Query: 376 IIFKQI-----AIKIKNFMSQTHLEPKEIIRLIDVHHLLEPQNLKRFILENQNKIARA-S 429
II K I IKN +++ K +++L D+ E ++LK + + ARA S
Sbjct: 340 IITKPIFDAIFGDNIKNPIAKAL--DKMVLKLSDLGLEGETKDLKNLYESVKTEAARAKS 397
Query: 430 LVSLAEMSNS-----------KRIEKSAYFTNP-----FIINEIAKLLPS-----FKQES 468
S E+ + K+ EK P FI+ +L F +S
Sbjct: 398 QKSQQELIKNLYNTFFKEAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQS 457
Query: 469 VTIIEPSAGCGNFLSALFKK 488
+TI +P G G+F++ L K
Sbjct: 458 ITIFDPFMGTGSFIARLLSK 477
>ref|NP_224044.1| putative [Helicobacter pylori J99]
Length = 792
Score = 30.0 bits (66), Expect = 0.25
Identities = 37/133 (27%), Positives = 55/133 (40%), Gaps = 30/133 (22%)
Query: 441 RIEKSAYFTNPFIINE----IAKLLPSFKQESVTIIEPSAGCGNFLSALFKKYTSVKKVY 496
R K AYFT + + +AK L QE I + + G GN L L K +Y
Sbjct: 265 RERKGAYFTPKIWVEKSQEYLAKALGQDYQEDYIIWDCAGGTGNLLRGLLNK----ANLY 320
Query: 497 LKCID----------IDKNSLEILE--ILYKDCIPNNF-------EMELICKDFLAYECG 537
L +D KN L++LE + D + ++F ++ I KD E
Sbjct: 321 LSTLDHNDVAIIKDLASKNHLKMLENQVFQFDFLNDDFFSDKTPKSLQEILKD---EEKR 377
Query: 538 KVDLIVGNPPFGK 550
K +I NPP+ +
Sbjct: 378 KKLIIYINPPYAE 390
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 28.5 bits (62), Expect = 0.72
Identities = 18/56 (32%), Positives = 28/56 (49%), Gaps = 3/56 (5%)
Query: 685 RDRQITNSVLVKNGIRVIKSRNIDENGKIISIENYDSYIQKEVLSPFKIASFLDRD 740
+D N L K ++ +K +N K + I+N S K+ +S FKIA F +D
Sbjct: 258 QDEWDLNKALQKEYLQELKDKN---KAKALDIQNNHSTPLKQKISKFKIALFNHKD 310
>ref|NP_222801.1| putative [Helicobacter pylori J99]
Length = 450
Score = 28.5 bits (62), Expect = 0.72
Identities = 20/91 (21%), Positives = 41/91 (44%), Gaps = 4/91 (4%)
Query: 421 NQNKIARASLVSLAEMSNSKRIEKSAYFTNPFIINEIAKLLPSFKQESVTIIEPSAGCGN 480
N I S+ + +K++ SAY T + +N+ + F+ + + I C
Sbjct: 51 NSQTIHDGSIETNYTPEKAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEEC-- 108
Query: 481 FLSALFKKYTSVKKVYLKCIDIDKNSLEILE 511
+ K+Y S K++++ + DK ++ LE
Sbjct: 109 --EFMKKRYESFKEIFVGLEEFDKQKIKELE 137
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 27.3 bits (59), Expect = 1.6
Identities = 21/74 (28%), Positives = 37/74 (49%), Gaps = 10/74 (13%)
Query: 101 ANHKKKNDEIKRNSLVVESIDLIKQIKPRFFILENVPSFYKTGCIDKNDNLLEIGSMIEQ 160
AN +++ + NS+V + I+ ++ KP L N P+ + + EI S+++Q
Sbjct: 101 ANLEEEYSSVAVNSVVKKVIEEVRDQKPYLASLINKPNEFNS----------EIESIMQQ 150
Query: 161 NLSGDYMLYDEVIN 174
NL + L E IN
Sbjct: 151 NLIKNAKLEIEKIN 164
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 26.9 bits (58), Expect = 2.1
Identities = 43/202 (21%), Positives = 73/202 (35%), Gaps = 31/202 (15%)
Query: 60 DIKKPETKEKILKQIEFYSKKFGNDRVDLVVATPPCQGMSVANHKKKNDEIKRNSLVVES 119
D++K LK+I +YSK + + L ND N +
Sbjct: 408 DVQKMIDTFNALKEIPYYSKMVSLEEISL------------------ND---YNLNIPRY 446
Query: 120 IDLIKQIKPRFFILENVPSFYKTGCIDKNDNLLEIGSMIEQNL------SGDYMLYDEVI 173
I ++++ F L N PS+ I D ++ ++ L G Y L E
Sbjct: 447 IAAKQELEKDLFALINSPSYLPKNEIKAYDPYFQVFKELKNTLFKKSDKEGYYALKTECE 506
Query: 174 NFKNFGANSSRTRTLVIGVCKEFKD---FISALEFFPDFKQEKTLKEVIGSLKPLAWGEY 230
N K+ S +T V F+ F + + P F KTL E + S + +
Sbjct: 507 NIKDLITQSLEYQTFHASVLSAFESLDLFTTFNDLEPGF-NPKTLIESVCSKVLKEFEKV 565
Query: 231 DNTDFYHSFRTYPKHMQEWIKD 252
D Y ++ + + E ++D
Sbjct: 566 GILDKYGVYQLFKDYYNEVLQD 587
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 26.9 bits (58), Expect = 2.1
Identities = 21/67 (31%), Positives = 39/67 (57%), Gaps = 9/67 (13%)
Query: 25 EEGFECVATNEILEKRLNIQRINRKCKLDESYISGDIKKPETKEKILKQ------IEFYS 78
E+ FECV E ++ LN+ IN++ D+ ++ IK+ + K K+L+Q ++ +S
Sbjct: 81 EKIFECVE-EEKHKQALNL--INKEDTEDKEELAKKIKEIKEKAKVLRQKFMAFEMKEHS 137
Query: 79 KKFGNDR 85
K+F N +
Sbjct: 138 KEFPNKK 144
>ref|NP_223686.1| putative [Helicobacter pylori J99]
Length = 623
Score = 26.6 bits (57), Expect = 2.7
Identities = 30/104 (28%), Positives = 43/104 (40%), Gaps = 22/104 (21%)
Query: 503 DKNSLEIL---EILYK---------DCIPNNFEMELICKDFLAYECGKVDLI-----VGN 545
D+ SL+IL E LY+ D ++E I FL G+ L +GN
Sbjct: 116 DRLSLDILLIDETLYRFIDKIRSSIDIFSEQKDVESISDAFLL-RLGQFKLYTFPKNLGN 174
Query: 546 PPFGKTHERFKDYSLRLTHLAGIFLEKSLKLANFTAMVMPKNLL 589
+ + F DY LRL + E + N V+PKNL+
Sbjct: 175 VKMHELEQMFSDYELRL----NTYTEVLRYIKNHPKEVLPKNLI 214
>ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 463
Score = 26.6 bits (57), Expect = 2.7
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 28/95 (29%)
Query: 316 KDDRVFSIRELMLLMN------IPSRFKWLDLELQELNALNQQEKEKISKQNEMNIRQSI 369
+D VFS++EL+ N PS F W L + L Q +++ K
Sbjct: 273 QDKEVFSMQELLEWFNPKDLNSSPSCFSWHKLNWLNAHYLKNQSVQELLK---------- 322
Query: 370 GEAVPTIIFKQIAIKIKNFMSQTHLEPKEIIRLID 404
+K +F +HL P ++ RL+D
Sbjct: 323 ------------LLKPFSFSDLSHLNPAQLDRLLD 345
>ref|NP_224088.1| putative [Helicobacter pylori J99]
Length = 218
Score = 26.2 bits (56), Expect = 3.6
Identities = 15/47 (31%), Positives = 25/47 (52%), Gaps = 3/47 (6%)
Query: 330 MNIPSRFKWLDLELQELNALNQQEKEKI---SKQNEMNIRQSIGEAV 373
+ IP RF + ELNA N+ +K+ + +NE N+R + +V
Sbjct: 46 LEIPERFSHASILSYELNASNKLKKDGVVFLRLENEPNLRLPVRYSV 92
>ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori
J99]
Length = 619
Score = 26.2 bits (56), Expect = 3.6
Identities = 19/64 (29%), Positives = 29/64 (44%), Gaps = 11/64 (17%)
Query: 529 KDFLAYECGKVDLIVGNPPFG---------KTHERFKDYSLRLTHLAGIFLEKSLKLANF 579
+DFL YE + + PPF K E+ + SL + + LEK + L+NF
Sbjct: 511 EDFLQYELQERCELY--PPFSRLCLLEFKHKNEEKAQQLSLEASQTLSLCLEKGVTLSNF 568
Query: 580 TAMV 583
A +
Sbjct: 569 KAPI 572
>ref|NP_223191.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 748
Score = 26.2 bits (56), Expect = 3.6
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 413 NLKRFILENQNKIARAS-LVSLAEMSNSKRIEKSAYFTNPFIINEIAKLLPSFKQE 467
N +RF++ + L+ L + K+ Y+ +PF +E+ K+ PS ++
Sbjct: 654 NKERFLMTPDELMTMGDELIILENTLKPIKCHKALYYDDPFFTDELIKVSPSLSKK 709
>ref|NP_222768.1| putative TYPE II restriction enzyme [Helicobacter pylori J99]
Length = 260
Score = 26.2 bits (56), Expect = 3.6
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 409 LEPQNLKRFILENQNKIARASLVSLAEMSNS-------KRIEKSAYFTNPFIINEIAKLL 461
+EP +L FI + I +AS +AE + S K ++ A F +II E AK L
Sbjct: 133 VEPVDLNDFIANENDAILKASDNVMAEFAKSHLNYHHHKGLDFVARFNKKYIIGE-AKFL 191
Query: 462 PSF 464
F
Sbjct: 192 TDF 194
>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 649
Score = 25.8 bits (55), Expect = 4.7
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 33 TNEILEKRLNIQRINRKCKLDESYISGDIKKPETKEKILKQIEFYSKK----FGNDRVDL 88
TNEIL+ + N+ KLDE +KK K K ++++ K F +++DL
Sbjct: 70 TNEILK-----ECSNQGVKLDEEI----LKKAFVKFKKQGSMDYFIHKNAQGFLKEQLDL 120
Query: 89 VVATPPCQGMSVANHKKKNDEIKRNSLVVESIDLIKQIKPRFFILENVP 137
+ + M+ +HK+ N + +E I L+ + + + N P
Sbjct: 121 YLFEYLFKEMTAFDHKRLNGINTIKEVALEVIALVSEFENELCKIWNKP 169
>ref|NP_223874.1| putative [Helicobacter pylori J99]
Length = 415
Score = 25.8 bits (55), Expect = 4.7
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 632 SKEVLARSLPLNLSIKQKPSYIFDKQLPYWVIYRNAFFDKVFHSMQFGLF 681
+K VL SL L +S YI +++PY + AF D F + G+F
Sbjct: 136 AKSVLVLSLGLLISYL----YIKTQKIPYLTLSACAFLDGAFIPLLLGVF 181
>ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacter pylori J99]
Length = 560
Score = 25.8 bits (55), Expect = 4.7
Identities = 31/162 (19%), Positives = 69/162 (42%), Gaps = 10/162 (6%)
Query: 336 FKWLDLELQELNALNQQEKEKISKQNEMNIRQSIGEAVPTIIFKQIAIKIKNFMSQTHLE 395
FK L +++E + +E E + +N V + +F ++ + K + + H+
Sbjct: 132 FKPLQEKIKEAYPILYEELEILQSKNVSASLFKANAQVFSALFNHLSYEKKLQIFEKHIP 191
Query: 396 PKEIIRLIDVHHLLEPQNLKRFILENQNKIARASLVSLAEMSNSKRIEKSAYF---TNPF 452
KE+ RL+D + + + + IL+ + + +L SN+ + +F N
Sbjct: 192 IKELNRLLDEDYPAFNRLIYQVILDPKLDHFKDALAK----SNATQSNAQTFFILGINEI 247
Query: 453 IINEIAKLLPSFKQESVTIIEPSAGCGNFLSALFKKYTSVKK 494
+ + +K L F++ + + A+F +Y + KK
Sbjct: 248 LHKKTSKALKYFERSEAVVKDDDFSKDR---AIFWQYLASKK 286
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 25.8 bits (55), Expect = 4.7
Identities = 20/87 (22%), Positives = 38/87 (42%), Gaps = 2/87 (2%)
Query: 440 KRIEKSAYFTNPFIINEIAKLLPSFKQESVTIIEPSAGCGNFLSALFKKYTSVKKVYLKC 499
+++E +A+ T P A L+ ES+ I PS + Y V+K +
Sbjct: 439 EKLESNAHVTEPPARYSEASLIKVL--ESLGIGRPSTYAPTISLLQNRDYIKVEKKQISA 496
Query: 500 IDIDKNSLEILEILYKDCIPNNFEMEL 526
++ +EILE +++ + + F L
Sbjct: 497 LESAFKVIEILEKHFEEIVDSKFSASL 523
>ref|NP_224097.1| putative [Helicobacter pylori J99]
Length = 376
Score = 25.4 bits (54), Expect = 6.1
Identities = 13/57 (22%), Positives = 32/57 (55%), Gaps = 2/57 (3%)
Query: 705 RNIDENGKIISIENYDSYIQKEVLSPFKIASFLDRDDVYLTPNMTYKPRILKKEKGY 761
++I KI ++ +S++ +++ F + S + + + +P+M ++LK+EK Y
Sbjct: 41 KDIVTQQKIALVDEDNSFLSRQLA--FMVQSSNELEIAFFSPSMLEAKKLLKEEKIY 95
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 25.4 bits (54), Expect = 6.1
Identities = 20/70 (28%), Positives = 33/70 (46%), Gaps = 16/70 (22%)
Query: 441 RIEKSAYFTNP----FIINEIAKLLPS-FKQ-----------ESVTIIEPSAGCGNFLSA 484
R +K Y+T FIIN + LL + FK +++ +++ + G G FL
Sbjct: 310 REKKGVYYTPDSVVEFIINALDSLLKTHFKDAPLGLKSALDNKNIKLLDFATGTGTFLLE 369
Query: 485 LFKKYTSVKK 494
F+K V+K
Sbjct: 370 AFRKALEVRK 379
>ref|NP_223522.1| FLAGELLAR HOOK PROTEIN [Helicobacter pylori J99]
Length = 718
Score = 25.4 bits (54), Expect = 6.1
Identities = 18/82 (21%), Positives = 34/82 (40%), Gaps = 2/82 (2%)
Query: 689 ITNSVLVKNGIRVIKSRNIDENGKIISIENYDSYIQKEVLSPFKI--ASFLDRDDVYLTP 746
+TN+VL KN ++ + + ++ E G S + + R + Y +
Sbjct: 447 VTNNVLFKNAMKGLNTASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSG 506
Query: 747 NMTYKPRILKKEKGYVVNGSVA 768
+ R++ E G +V GS A
Sbjct: 507 GAEWNFRVIVPEPGELVGGSAA 528
>ref|NP_223076.1| putative RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE [Helicobacter
pylori J99]
Length = 329
Score = 25.4 bits (54), Expect = 6.1
Identities = 12/31 (38%), Positives = 18/31 (57%)
Query: 623 ETIAIVTQKSKEVLARSLPLNLSIKQKPSYI 653
ETI V+Q S A PL ++K+KP ++
Sbjct: 47 ETIEFVSQSSWRYFATHDPLKENLKEKPPHL 77
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 25.4 bits (54), Expect = 6.1
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 15/62 (24%)
Query: 65 ETKEKILKQIEFYSKKFGNDRVDLVVATPPCQGMSVANHKKKNDEIKRN--SLVVESIDL 122
E KEK+L+ + FYSK G + +S+ +K+ E +++ L+ E++DL
Sbjct: 395 ENKEKLLELLRFYSKDKG-------------EWISLKEYKENLKENQKSIYYLLGENLDL 441
Query: 123 IK 124
+K
Sbjct: 442 LK 443
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 25.0 bits (53), Expect = 7.9
Identities = 12/28 (42%), Positives = 18/28 (63%), Gaps = 6/28 (21%)
Query: 530 DFLAYECGKVDLIVGNPPFGKTHERFKD 557
DFL ++C I+GNPP+ + E+ KD
Sbjct: 811 DFLGFDC-----IIGNPPYIR-QEQIKD 832
>ref|NP_222725.1| 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase [Helicobacter
pylori J99]
Length = 276
Score = 25.0 bits (53), Expect = 7.9
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 382 AIKIKNFMSQTHLEPKEIIRLIDVHHLLEPQNLKRFILE 420
A+ I ++TH++PK L D ++L+P L+ + +
Sbjct: 232 AVGIDGLFAETHIDPKN--ALSDGANMLKPDELEHLVTD 268
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.138 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 922,252
Number of Sequences: 1491
Number of extensions: 46874
Number of successful extensions: 189
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 171
Number of HSP's gapped (non-prelim): 37
length of query: 823
length of database: 494,079
effective HSP length: 85
effective length of query: 738
effective length of database: 367,344
effective search space: 271099872
effective search space used: 271099872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)