BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645162|ref|NP_207332.1| cag pathogenicity island
protein (cag15) [Helicobacter pylori 26695]
(114 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223202.1| cag island protein [Helicobacter pylori J99] 228 3e-62
ref|NP_223019.1| putative [Helicobacter pylori J99] 27 0.15
ref|NP_223566.1| Outer membrane protein/porin [Helicobacter... 27 0.19
ref|NP_223433.1| putative [Helicobacter pylori J99] 25 0.43
ref|NP_223062.1| multi-drug resistance protein [Helicobacte... 25 0.56
ref|NP_223928.1| NICOTINAMIDE MONONUCLEOTIDE TRANSPORTER [H... 25 0.73
ref|NP_223398.1| putative ROD SHAPE-DETERMINING PROTEIN [He... 25 0.73
ref|NP_223104.1| putative [Helicobacter pylori J99] 24 0.95
ref|NP_222850.1| L-lactate permease [Helicobacter pylori J99] 24 1.2
ref|NP_223809.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223997.1| DNA transfer protein [Helicobacter pylori ... 22 3.6
ref|NP_224188.1| putative [Helicobacter pylori J99] 22 4.7
ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [He... 22 4.7
ref|NP_223135.1| putative [Helicobacter pylori J99] 22 6.2
ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter py... 22 6.2
ref|NP_222766.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 6.2
ref|NP_224018.1| putative [Helicobacter pylori J99] 21 8.0
ref|NP_223621.1| putative cation efflux system protein [Hel... 21 8.0
ref|NP_223030.1| putative tetraacyldisaccharide-1-P 4'-kina... 21 8.0
>ref|NP_223202.1| cag island protein [Helicobacter pylori J99]
Length = 114
Score = 228 bits (581), Expect = 3e-62
Identities = 112/114 (98%), Positives = 114/114 (99%)
Query: 1 MKRPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLVALFSYGAGVILVYPIL 60
MKRPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFL+ALFSYGAGVILVYPIL
Sbjct: 1 MKRPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIALFSYGAGVILVYPIL 60
Query: 61 FLFALIIKPSFFYYTTYLLLLVSLSIISKYYLLSHANFTMKLIILMTQWQNWFL 114
FLFALIIKPSFFYYTTYLLLLVSLSIISKYYLLSHANFTMKLI+LMTQWQNWFL
Sbjct: 61 FLFALIIKPSFFYYTTYLLLLVSLSIISKYYLLSHANFTMKLIMLMTQWQNWFL 114
>ref|NP_223019.1| putative [Helicobacter pylori J99]
Length = 251
Score = 26.9 bits (58), Expect = 0.15
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 31 RLFNISSIVIGF-----LVALFSYGAGVILVYPILFLFALIIKPSFFYYTTYLLLLVSLS 85
R+F ++GF L AL S V L Y + + L IK S FYY LL+
Sbjct: 156 RIFQNEQSILGFCNIINLYALMSCNVFVPLEY-LPNIGQLFIKTSIFYYLNQLLIKAFQG 214
Query: 86 IISKYYLLSHANFTMKLIIL 105
I + L + F + IIL
Sbjct: 215 IDTILVLATSTFFIIGGIIL 234
>ref|NP_223566.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 520
Score = 26.6 bits (57), Expect = 0.19
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 15 FKHSFNKHLDKYSLYYRLFNISSIVIGFL-----VALFSYGAGVILVYPI 59
+K F K + YY F+ + +GF V L++YG G ++Y I
Sbjct: 361 YKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNI 410
>ref|NP_223433.1| putative [Helicobacter pylori J99]
Length = 227
Score = 25.4 bits (54), Expect = 0.43
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 10 QNFLQFKHSFNKHLDKYSLYYRL-FNISSIVIGFLVALFSYGAGVILVYPIL 60
+ FL+ K ++ L++ L+ R+ S + G+ AL SY G++ +L
Sbjct: 28 KQFLRLKKTYPSKLNESFLFRRIDAGFISSIAGYPFALCSYSLGIVAYKEVL 79
>ref|NP_223062.1| multi-drug resistance protein [Helicobacter pylori J99]
Length = 551
Score = 25.0 bits (53), Expect = 0.56
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 15 FKHSFNKHLDKYSLYYRLFNISSIVIGFLVALFSY-------------GAGVILVYPILF 61
F ++K+L ++ + + SS+V+ A +Y ++ + P L
Sbjct: 4 FFRRYSKYLKEHYKSFIVVLFSSLVVALSTAWGTYLVKPTLDEIFINKDTHMLKILPFLV 63
Query: 62 LFALIIKPSFFYYTTYLLLLVSLSIISK 89
+ A + K Y TY + L I+ K
Sbjct: 64 ILAYLGKSGGMYVGTYFTNFIGLDIVKK 91
>ref|NP_223928.1| NICOTINAMIDE MONONUCLEOTIDE TRANSPORTER [Helicobacter pylori J99]
Length = 220
Score = 24.6 bits (52), Expect = 0.73
Identities = 22/70 (31%), Positives = 35/70 (49%), Gaps = 15/70 (21%)
Query: 7 KLKQNFLQFKHSFN-------------KHLDKYSLYYRLFNISSIVIGFLVALFSYGAGV 53
++K NFL + SFN ++++ Y+L L NI SI++ F + S + V
Sbjct: 138 EIKTNFL-WAESFNFVIFIIAFILQVLRYVENYALV-TLGNIVSIIVWFCIFQISTESLV 195
Query: 54 ILVYPILFLF 63
L IL+LF
Sbjct: 196 QLFTTILYLF 205
>ref|NP_223398.1| putative ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99]
Length = 381
Score = 24.6 bits (52), Expect = 0.73
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 39 VIGFLVALFSYGAGVILVYPILF 61
V+G + LFSYG + + ILF
Sbjct: 323 VVGIPLPLFSYGGSSFITFMILF 345
>ref|NP_223104.1| putative [Helicobacter pylori J99]
Length = 429
Score = 24.3 bits (51), Expect = 0.95
Identities = 23/78 (29%), Positives = 37/78 (46%), Gaps = 8/78 (10%)
Query: 26 YSLYY-----RLFNISSIVIGFLVALFS--YGAGVILVYPILFLFALIIKPSFFYYTTYL 78
Y+LY +LF S+ +GFLV + S A + V L L I+
Sbjct: 175 YALYSQNQKEKLFFTLSVFVGFLVVILSATRSATIAFVATFLILSCFILYAKKSLKPLGY 234
Query: 79 LLLVSLSIISKYYLLSHA 96
+++VSL ++S Y+ S+A
Sbjct: 235 MVVVSL-VLSALYVGSNA 251
>ref|NP_222850.1| L-lactate permease [Helicobacter pylori J99]
Length = 551
Score = 23.9 bits (50), Expect = 1.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 32 LFNISSIVIGFLVALFSYGAGVILVYPILFLFALIIKPSFFYYTTYL 78
LF +S +V F+V L G+ +P +F+ A + F + YL
Sbjct: 199 LFFVSLLVPFFIVFLMDGFKGIKETFPAVFIAAFSFAGAQFLSSNYL 245
>ref|NP_223809.1| putative [Helicobacter pylori J99]
Length = 386
Score = 22.7 bits (47), Expect = 2.8
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 28 LYYRLFNISSIVIGFLVA------------LFSYGAGVILV--YPILFLFALIIKPSFFY 73
++Y F + SI+I FL A L G +L+ P F+ + +FF
Sbjct: 250 VFYIAFQVISILIHFLKAKNYSQKIALSSLLVLLGVSPLLLSNIPYCFIGVYALMVAFFA 309
Query: 74 YTTYLLLLVSLSIISK 89
Y +Y L +SK
Sbjct: 310 YMSYCLGYQFSKFVSK 325
>ref|NP_223997.1| DNA transfer protein [Helicobacter pylori J99]
Length = 409
Score = 22.3 bits (46), Expect = 3.6
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 36 SSIVIGFLVALFSYGAGVILVYPILFLFALIIKPSFFYYTTYLLLLVSLSIISKYYLLSH 95
+++ I L+A+ + G IL + FLF+L P Y Y + ++ +LL +
Sbjct: 141 NALGINHLLAISGFHLG-ILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGY 199
>ref|NP_224188.1| putative [Helicobacter pylori J99]
Length = 333
Score = 21.9 bits (45), Expect = 4.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 38 IVIGFLVALFSYGAGVILVYPIL 60
++ F AL SY GV+LV +L
Sbjct: 2 LIARFKKALISYSLGVLLVSSLL 24
>ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 331
Score = 21.9 bits (45), Expect = 4.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 31 RLFNISSIVIGFLVALFSYGAGVILVYPILFLFAL 65
RL ++ F LF++ + +YP+ FLF L
Sbjct: 157 RLLTSRGLLNRFFKPLFNFVSKSWHIYPVGFLFGL 191
>ref|NP_223135.1| putative [Helicobacter pylori J99]
Length = 631
Score = 21.6 bits (44), Expect = 6.2
Identities = 7/22 (31%), Positives = 14/22 (62%)
Query: 3 RPISKLKQNFLQFKHSFNKHLD 24
+ + L++N ++FK F HL+
Sbjct: 524 KDLKNLQKNLIRFKEDFFTHLN 545
>ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter pylori J99]
Length = 445
Score = 21.6 bits (44), Expect = 6.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 16 KHSFNKHLDKYSLYYRLFNISSIVIGFLVALFS-YGAGVILV 56
KHSF KHL+ L L + +FS GA V+++
Sbjct: 164 KHSFPKHLNLQKLRIVLDTANGAAYKVAPVVFSELGADVLVI 205
>ref|NP_222766.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 185
Score = 21.6 bits (44), Expect = 6.2
Identities = 11/31 (35%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Query: 5 ISKLKQNFLQFKHSFNKHLDKYSLYYRLFNI 35
++K+K F+ F + HLD+ S Y +L N+
Sbjct: 71 VTKVKGTFV-FILENDLHLDENSFYKKLLNL 100
>ref|NP_224018.1| putative [Helicobacter pylori J99]
Length = 178
Score = 21.2 bits (43), Expect = 8.0
Identities = 15/55 (27%), Positives = 27/55 (48%), Gaps = 2/55 (3%)
Query: 55 LVYPILFLFA--LIIKPSFFYYTTYLLLLVSLSIISKYYLLSHANFTMKLIILMT 107
L++ ++LF + P F + L LL++L + LL T+ L +L+T
Sbjct: 52 LIFITIYLFTKTYLKIPYFLLFPLLLTLLLTLLLTLLLTLLLTLLLTLLLTLLLT 106
>ref|NP_223621.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 1019
Score = 21.2 bits (43), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (62%)
Query: 32 LFNISSIVIGFLVALFSYG 50
L NI V G L+ALF+ G
Sbjct: 886 LLNIPFAVTGGLIALFAVG 904
>ref|NP_223030.1| putative tetraacyldisaccharide-1-P 4'-kinase [Helicobacter pylori
J99]
Length = 312
Score = 21.2 bits (43), Expect = 8.0
Identities = 7/18 (38%), Positives = 11/18 (60%)
Query: 86 IISKYYLLSHANFTMKLI 103
++ K Y HA F +KL+
Sbjct: 234 VVKKLYFRDHAPFDLKLL 251
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.335 0.147 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,284
Number of Sequences: 1491
Number of extensions: 5169
Number of successful extensions: 37
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 19
length of query: 114
length of database: 494,079
effective HSP length: 66
effective length of query: 48
effective length of database: 395,673
effective search space: 18992304
effective search space used: 18992304
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 43 (21.2 bits)